Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 30 of 172
Found at i:7262813 original size:41 final size:41
Alignment explanation
Indices: 7262711--7262831 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
7262701 GTGATCGAAT
* * * *
7262711 GTAATACAGACTTTACGTCTAGCAGGCTTGATGCCGATGAA
1 GTAATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGAA
*
7262752 GTAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTG-A
1 GTAATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGAA
* * * *
7262792 -TACATTTCGGACTATAGGTCTAGCAGGCTAAAAGCCGGTG
1 GTA-A-TTCAGACTATACGTCTAGCAGGCTTAATGCCGGTG
7262832 TACTGAATCA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.03
40 2 0.03
41 66 0.94
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (41 bp):
GTAATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGAA
Found at i:7263196 original size:18 final size:18
Alignment explanation
Indices: 7263173--7263238 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
7263163 TATGATGAAT
7263173 ATGTATATATATATTCGA
1 ATGTATATATATATTCGA
7263191 ATGTATGTATTAGTTATGTATTCGA
1 ATGTA--TA-TA--TA--TATTCGA
* *
7263216 ATATGTATATATATTCGA
1 ATGTATATATATATTCGA
7263234 ATGTA
1 ATGTA
7263239 GGTATTAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
18 15 0.41
20 4 0.11
21 2 0.05
22 2 0.05
23 4 0.11
25 10 0.27
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (18 bp):
ATGTATATATATATTCGA
Found at i:7263215 original size:25 final size:24
Alignment explanation
Indices: 7263172--7263255 Score: 76
Period size: 25 Copynumber: 3.8 Consensus size: 24
7263162 ATATGATGAA
*
7263172 TATGTA-TA-TATATATTCGAATG
1 TATGTATTAGTATGTATTCGAATG
7263194 TATGTATTAGTTATGTATTCGAA--
1 TATGTATTAG-TATGTATTCGAATG
7263217 TATGTA-TA-TA--TATTCGAATG
1 TATGTATTAGTATGTATTCGAATG
*
7263237 TAGGTATTAGCTATGTATT
1 TATGTATTAG-TATGTATT
7263256 TAGGTATAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
18 8 0.16
20 7 0.14
21 2 0.04
22 8 0.16
23 10 0.20
25 15 0.30
ACGTcount: A:0.32, C:0.05, G:0.17, T:0.46
Consensus pattern (24 bp):
TATGTATTAGTATGTATTCGAATG
Found at i:7263225 original size:43 final size:44
Alignment explanation
Indices: 7263169--7263255 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
7263159 TGTATATGAT
* *
7263169 GAATATGTATATATATATTCGAATGTATGTATTAGTTATGTATTC
1 GAATATG-ATATATATATTCGAATGTAGGTATTAGCTATGTATTC
7263214 GAATATG-TATATATATTCGAATGTAGGTATTAGCTATGTATT
1 GAATATGATATATATATTCGAATGTAGGTATTAGCTATGTATT
7263256 TAGGTATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 33 0.82
45 7 0.17
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (44 bp):
GAATATGATATATATATTCGAATGTAGGTATTAGCTATGTATTC
Found at i:7264835 original size:3 final size:3
Alignment explanation
Indices: 7264827--7264866 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
7264817 ATATGTAGGT
*
7264827 ATA ATA ATA A-A AT- ATA AT- ATA ATA ATA AAA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7264867 CAAAATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.19
3 26 0.81
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7264849 original size:18 final size:18
Alignment explanation
Indices: 7264826--7264882 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
7264816 TATATGTAGG
7264826 TATAATAATAAAATATAA
1 TATAATAATAAAATATAA
7264844 TATAATAATAAAA-AT-A
1 TATAATAATAAAATATAA
*
7264860 -ATAATAACAAAAT-TAA
1 TATAATAATAAAATATAA
*
7264876 TAAAATA
1 TATAATA
7264883 GACTAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
15 12 0.35
16 2 0.06
17 7 0.21
18 13 0.38
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
TATAATAATAAAATATAA
Found at i:7265125 original size:19 final size:21
Alignment explanation
Indices: 7265087--7265125 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
7265077 CCTTTTTTAA
*
7265087 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
7265108 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
7265126 CAGTAAGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:7265189 original size:44 final size:45
Alignment explanation
Indices: 7265141--7265225 Score: 147
Period size: 44 Copynumber: 1.9 Consensus size: 45
7265131 AGCCACCTTT
7265141 AAAAAACTG-CCAATCGTTCTCCCTTTTTTATTGATT-TTTTAAAA
1 AAAAAACTGTCC-ATCGTTCTCCCTTTTTTATTGATTCTTTTAAAA
7265185 AAAAAACTGTCCATCGTTCTCCCTTTTTTATTGATTCTTTT
1 AAAAAACTGTCCATCGTTCTCCCTTTTTTATTGATTCTTTT
7265226 TTTCTACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
44 33 0.85
45 6 0.15
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.46
Consensus pattern (45 bp):
AAAAAACTGTCCATCGTTCTCCCTTTTTTATTGATTCTTTTAAAA
Found at i:7265365 original size:23 final size:22
Alignment explanation
Indices: 7265322--7265379 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
7265312 AAAGGGTATC
* *
7265322 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7265343 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
7265366 TACATATCATATCT
1 TACAAATCATATCT
7265380 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7265382 original size:19 final size:19
Alignment explanation
Indices: 7265335--7265453 Score: 112
Period size: 21 Copynumber: 5.8 Consensus size: 19
7265325 AAATTAAATC
*
7265335 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
7265355 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
7265377 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
7265398 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
* *
7265419 TATAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
7265438 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
7265454 CTCGAAGGTT
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
19 32 0.36
21 38 0.43
22 7 0.08
23 11 0.12
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:7265395 original size:21 final size:21
Alignment explanation
Indices: 7265369--7265452 Score: 145
Period size: 21 Copynumber: 4.1 Consensus size: 21
7265359 CTAAGATTAC
7265369 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
7265390 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
*
7265411 ATATCATATATAAGATTGC--
1 ATATCATATCTAAGATTGCAT
7265430 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
7265451 AT
1 AT
7265453 CCTCGAAGGT
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
19 18 0.31
21 41 0.69
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:7265406 original size:40 final size:38
Alignment explanation
Indices: 7265351--7265453 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 38
7265341 ATTACAAAAT
*
7265351 CATATC-T-TCTAAGATTACATATCATATCTAAGATTG
1 CATATCATATCTAAGATTACATATCATATATAAGATTG
*
7265387 CATATATCATATCTAAGATTGCATATATCATATATAAGATTG
1 C--ATATCATATCTAAGATT--ACATATCATATATAAGATTG
*
7265429 CATATCATATCTAAGATTGCATATC
1 CATATCATATCTAAGATTACATATC
7265454 CTCGAAGGTT
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
36 1 0.02
38 10 0.18
39 1 0.02
40 26 0.46
42 19 0.33
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTACATATCATATATAAGATTG
Found at i:7265899 original size:128 final size:129
Alignment explanation
Indices: 7265737--7265988 Score: 301
Period size: 128 Copynumber: 2.0 Consensus size: 129
7265727 AGATGAATTT
* * * *
7265737 GATGCGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * ** * * *
7265802 ACTTTAGGGAGATAGGATTTAT-TTATTTAGTCTGCTCCACTGCTACTTTAGGGAGATAAGACTA
66 ACTTCAGGGAGATAAGA-TTATCGGATTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* * ** * * * *
7265866 GATGCGTTCTGCTCT-CTGCAACTTCAGATAGATAAGATCCAAGGTTTTAATCCGCTTCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
*
7265930 ACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
66 ACTTCAGGGAGATAAGATTATCGGATTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
7265989 AATTTGCCAT
Statistics
Matches: 102, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
127 4 0.04
128 84 0.82
129 14 0.14
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (129 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
ACTTCAGGGAGATAAGATTATCGGATTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:7265932 original size:44 final size:44
Alignment explanation
Indices: 7265881--7265988 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
7265871 GTTCTGCTCT
* * *
7265881 CTGCAACTTCAGATAGATAAGATCCA-AGGTTTTAATCCGCTTCA
1 CTGCAACTTCAGAGAGATAAGAT-CATAGGCTTTAATCCGCTCCA
* * * *
7265925 CTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCATAGGCTTTAATCCGCTCCA
*
7265969 CTGCAACTTCAGGGAGATAA
1 CTGCAACTTCAGAGAGATAA
7265989 AATTTGCCAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 1 0.02
44 55 0.98
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCATAGGCTTTAATCCGCTCCA
Found at i:7266555 original size:88 final size:88
Alignment explanation
Indices: 7266429--7266999 Score: 926
Period size: 88 Copynumber: 6.5 Consensus size: 88
7266419 GTTGGGGTCA
* * **
7266429 TCGATCTGCTTCACTATCGGTAAAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
*
7266494 CCAGGAAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * *
7266517 TCGATCTACTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
7266582 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
*
7266605 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGTAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
7266670 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * * *
7266693 TTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCAGCTATTTTTAACCTGCTCCGCTGTAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
* *
7266758 CCAAGGAGGCAAGGTTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* *
7266781 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
*
7266846 CCAGGGAGGCAAGGCTAGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* *
7266869 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGTTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
* * *
7266934 CCAGAGAGACAAGGTTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
*
7266957 TCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAGATCTGTTAT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTAT
7267000 CTTCACTGAT
Statistics
Matches: 454, Mismatches: 29, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 454 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAAC
CCAGGGAGGCAAGGCTGGTGTCT
Found at i:7270094 original size:32 final size:32
Alignment explanation
Indices: 7270053--7270116 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
7270043 AACGAAGCAA
7270053 AGTTGCGTAGTCATCCCTTAGACCATAATCTT
1 AGTTGCGTAGTCATCCCTTAGACCATAATCTT
7270085 AGTTGCGTAGTCATCCCTTAGACCATAATCTT
1 AGTTGCGTAGTCATCCCTTAGACCATAATCTT
7270117 TCTCTCGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (32 bp):
AGTTGCGTAGTCATCCCTTAGACCATAATCTT
Found at i:7272296 original size:51 final size:52
Alignment explanation
Indices: 7272241--7272357 Score: 134
Period size: 51 Copynumber: 2.3 Consensus size: 52
7272231 TATAAAACTT
* *
7272241 ATATATATATATAAAATACA-TAATGCATTTATGAAAACAAGGAAA-ATATAA
1 ATATATATATATAAAATACATTAATGCATTTA-CAAAAAAAGGAAATATATAA
* * * *
7272292 ATATATACATATAAAATATATTCATGCATTTACAAAAAAATGAAATATATAA
1 ATATATATATATAAAATACATTAATGCATTTACAAAAAAAGGAAATATATAA
*
7272344 GTATA-ATATA-AAAA
1 ATATATATATATAAAA
7272358 CGTGGAAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 4 0.07
51 32 0.57
52 20 0.36
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (52 bp):
ATATATATATATAAAATACATTAATGCATTTACAAAAAAAGGAAATATATAA
Found at i:7272624 original size:3 final size:3
Alignment explanation
Indices: 7272616--7272677 Score: 71
Period size: 3 Copynumber: 22.0 Consensus size: 3
7272606 ATATGTAGGT
*
7272616 ATA ATA ATA A-A AT- ATA AT- ATA ATA ATA AAA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7272661 ATA A-A ATTA ATA A-A ATA
1 ATA ATA A-TA ATA ATA ATA
7272678 GACTAAAAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
2 10 0.20
3 39 0.76
4 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7272638 original size:18 final size:18
Alignment explanation
Indices: 7272615--7272677 Score: 83
Period size: 18 Copynumber: 3.4 Consensus size: 18
7272605 TATATGTAGG
7272615 TATAATAATAAAATATAA
1 TATAATAATAAAATATAA
7272633 TATAATAATAAAAATAATAA
1 TATAATAAT-AAAAT-ATAA
7272653 TAATAATAATAAAAT-TAA
1 T-ATAATAATAAAATATAA
*
7272671 TAAAATA
1 TATAATA
7272678 GACTAAAAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
17 5 0.12
18 13 0.32
19 5 0.12
20 10 0.24
21 8 0.20
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TATAATAATAAAATATAA
Found at i:7272639 original size:15 final size:15
Alignment explanation
Indices: 7272619--7272677 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 15
7272609 TGTAGGTATA
7272619 ATAATAAAATATAAT
1 ATAATAAAATATAAT
*
7272634 ATAATAATAAAAATAAT
1 ATAAT-A-AAATATAAT
*
7272651 AATAATAATAATAAAAT
1 -ATAATAA-AATATAAT
7272668 -TAATAAAATA
1 ATAATAAAATA
7272678 GACTAAAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 4 0.11
15 11 0.30
16 2 0.05
17 15 0.41
18 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAATAAAATATAAT
Found at i:7273006 original size:43 final size:44
Alignment explanation
Indices: 7272947--7273033 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 44
7272937 TCACCTTTAA
7272947 AAAACTGCCAATCGTTCTCCCTTTTTTATTGATTCTTTTTTTTT
1 AAAACTGCCAATCGTTCTCCCTTTTTTATTGATTCTTTTTTTTT
*
7272991 AAAACTG-CAATCGTTCTCTCTTTTTTATTGATTCTTTTTTTTT
1 AAAACTGCCAATCGTTCTCCCTTTTTTATTGATTCTTTTTTTTT
7273034 CTACAATGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 35 0.83
44 7 0.17
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.56
Consensus pattern (44 bp):
AAAACTGCCAATCGTTCTCCCTTTTTTATTGATTCTTTTTTTTT
Found at i:7273163 original size:22 final size:21
Alignment explanation
Indices: 7273128--7273185 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
7273118 AAAGGGTATC
* *
7273128 TACAAATTAAATCTCTAAAAT
1 TACAAATCATATCTCTAAAAT
**
7273149 TACAAAATCATATCTTCTACGAT
1 TAC-AAATCATATC-TCTAAAAT
*
7273172 TACATATCATATCT
1 TACAAATCATATCT
7273186 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:7273191 original size:19 final size:19
Alignment explanation
Indices: 7273164--7273237 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
7273154 AATCATATCT
*
7273164 TCTACGATTACATATCATA
1 TCTAAGATTACATATCATA
*
7273183 TCTAAGATTGTATATATCATA
1 TCTAAGA-T-TACATATCATA
*
7273204 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
7273223 TCTAAGATTGCATAT
1 TCTAAGATTACATAT
7273238 TCTCGTAGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 30 0.61
20 2 0.04
21 17 0.35
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:7273201 original size:21 final size:20
Alignment explanation
Indices: 7273175--7273237 Score: 92
Period size: 21 Copynumber: 3.1 Consensus size: 20
7273165 CTACGATTAC
7273175 ATATCATATCTAAGATTGTAT
1 ATATCATATCTAAGATTG-AT
*
7273196 ATATCATATCTAAGATTG-C
1 ATATCATATCTAAGATTGAT
7273215 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTG-AT
7273236 AT
1 AT
7273238 TCTCGTAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.47
21 20 0.53
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.40
Consensus pattern (20 bp):
ATATCATATCTAAGATTGAT
Found at i:7275022 original size:19 final size:18
Alignment explanation
Indices: 7274987--7275023 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
7274977 ATGATAATCT
*
7274987 TTTAAAAAATATTTAAAA
1 TTTAAAAAATATATAAAA
7275005 TTTAAAAAATCATATAAAA
1 TTTAAAAAAT-ATATAAAA
7275024 AGTTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
TTTAAAAAATATATAAAA
Found at i:7275029 original size:21 final size:18
Alignment explanation
Indices: 7274987--7275031 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
7274977 ATGATAATCT
*
7274987 TTTAAAAAATATTTAAAA
1 TTTAAAAAATATTAAAAA
7275005 TTTAAAAAATCATATAAAAA
1 TTTAAAAAAT-AT-TAAAAA
7275025 GTTTAAA
1 -TTTAAA
7275032 CATTTCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 10 0.43
19 2 0.09
20 5 0.22
21 6 0.26
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
TTTAAAAAATATTAAAAA
Found at i:7275272 original size:16 final size:16
Alignment explanation
Indices: 7275251--7275309 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 16
7275241 AACGTTCTAT
7275251 TTTTTTAAAATTATAA
1 TTTTTTAAAATTATAA
*
7275267 TTTTTTAAAATTTTAAGA
1 TTTTTTAAAATTAT-A-A
7275285 TTTTTTATTGAAATTATAA
1 TTTTTTA---AAATTATAA
7275304 TTTTTT
1 TTTTTT
7275310 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
16 13 0.36
17 1 0.03
18 8 0.22
19 7 0.19
20 1 0.03
21 6 0.17
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTTTTAAAATTATAA
Found at i:7290434 original size:12 final size:12
Alignment explanation
Indices: 7290417--7290444 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7290407 ATGTGGGTCT
7290417 TGTCTGATGTAC
1 TGTCTGATGTAC
7290429 TGTCTGATGTAC
1 TGTCTGATGTAC
7290441 TGTC
1 TGTC
7290445 AGTTTAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.43
Consensus pattern (12 bp):
TGTCTGATGTAC
Found at i:7293518 original size:20 final size:20
Alignment explanation
Indices: 7293493--7293530 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7293483 AGTGAAAAAA
7293493 ATTAAAAAATATATATATAT
1 ATTAAAAAATATATATATAT
* *
7293513 ATTAAAATATTTATATAT
1 ATTAAAAAATATATATAT
7293531 TTTTAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAAAAATATATATATAT
Found at i:7297331 original size:26 final size:25
Alignment explanation
Indices: 7297273--7297331 Score: 59
Period size: 26 Copynumber: 2.2 Consensus size: 25
7297263 GCAAAAATAT
7297273 AAATAATATTAATAAAAAATTACGAA
1 AAAT-ATATTAATAAAAAATTACGAA
7297299 AACATATATTAAATCAATAAAA-TAC-AA
1 AA-ATATATT-AAT-AA-AAAATTACGAA
7297326 AAATAT
1 AAATAT
7297332 TAGTAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
26 11 0.38
27 9 0.31
28 5 0.17
29 4 0.14
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (25 bp):
AAATATATTAATAAAAAATTACGAA
Found at i:7298794 original size:23 final size:25
Alignment explanation
Indices: 7298768--7298813 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7298758 AAGTACATTT
*
7298768 TATTAAT-TTATTT-TTATAAAAAA
1 TATTAATATTATTTATTACAAAAAA
*
7298791 TATTATTATTATTTATTACAAAA
1 TATTAATATTATTTATTACAAAA
7298814 TGAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 6 0.32
25 7 0.37
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTAATATTATTTATTACAAAAAA
Found at i:7301562 original size:23 final size:23
Alignment explanation
Indices: 7301532--7301578 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7301522 GGATGTTTGG
7301532 CCAACAGAGAGAATATATACATA
1 CCAACAGAGAGAATATATACATA
7301555 CCAACAGAGAGAATATATACATA
1 CCAACAGAGAGAATATATACATA
7301578 C
1 C
7301579 ACTTCTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.19, G:0.13, T:0.17
Consensus pattern (23 bp):
CCAACAGAGAGAATATATACATA
Found at i:7302082 original size:43 final size:41
Alignment explanation
Indices: 7301971--7302084 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 41
7301961 GGCGTTTTTT
* * *
7301971 TTCTTTAGCGGCACTTCA-AAAAAACGCCGCTAAAAATCATG
1 TTCTTTAGCGGCGCTTTATAAAAAACGCCGCTAAAAA-CATA
* *
7302012 TTCTTTAGCGGCGCTTTATTCACAAACGCCGCTGAAAGAA-ATA
1 TTCTTTAGCGGCGCTTTA-TAAAAAACGCCGCT-AAA-AACATA
7302055 TTCTTTAGCGGCGCTTTTATAAAAAACGCC
1 TTCTTTAGCGGCGC-TTTATAAAAAACGCC
7302085 ACTATTTTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
41 16 0.26
43 36 0.59
44 7 0.11
45 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (41 bp):
TTCTTTAGCGGCGCTTTATAAAAAACGCCGCTAAAAACATA
Found at i:7302420 original size:21 final size:21
Alignment explanation
Indices: 7302394--7302438 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7302384 TGCTCTGCTT
* * *
7302394 TGCTTCTCTCGCTGTAGCCTC
1 TGCTTCCCTCGCTGCAGCCGC
7302415 TGCTTCCCTCGCTGCAGCCGC
1 TGCTTCCCTCGCTGCAGCCGC
7302436 TGC
1 TGC
7302439 AGCTGCTGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.42, G:0.22, T:0.31
Consensus pattern (21 bp):
TGCTTCCCTCGCTGCAGCCGC
Found at i:7306127 original size:27 final size:27
Alignment explanation
Indices: 7306069--7306121 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7306059 CGTATAATCC
*
7306069 AAATAATAAACATTAACCACTAACCTA
1 AAATAATAAACATTAACCACTAAACTA
*
7306096 AAATACTAAACATTAAACC-CTAAACT
1 AAATAATAAACATT-AACCACTAAACT
7306122 CTAATATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (27 bp):
AAATAATAAACATTAACCACTAAACTA
Found at i:7306996 original size:114 final size:113
Alignment explanation
Indices: 7306794--7307183 Score: 414
Period size: 114 Copynumber: 3.4 Consensus size: 113
7306784 GCACTAGTTA
*
7306794 AAAAACGCCGCTAAAT-CCCGCAATGCTCAGTAAAACGACATCGTTGGGCTTAGGTTT-TCTGCG
1 AAAAACGCCGCTAAATCCCCG-AATGCTCAG-AAAACGACATCGTTGGGCTTAGGTTTCTTTGCG
* *
7306857 GCGCTTTCC-CAAAAACGCCGCTAAAGCCTTTAGCATTAGCAGCGCTTCTCC
64 GCGC-TTCCTCAAAAACGCCGCTAAAGCC-TGAGCATTAGCGGCGCTTCTCC
* * *
7306908 ATAAACGCCGCTAAATCCCCGAATACTCAGAGAACGACATCGTTGGGCTTAGGTTTCTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGACATCGTTGGGCTTAGGTTTCTTTGCGGC
* * * * * *
7306973 GCTTCCTCAGAAATGCCGCTAAAGCACTGATCATTGGCGGTGCTAC-CTC
66 GCTTCCTCAAAAACGCCGCTAAAGC-CTGAGCATTAGCGGCGCTTCTC-C
* * * * * *
7307022 AAAAACACCGCTAAGTCACCGAATGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTCTTTGCGGT
1 AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGACATCGTTGGGCTTAGGTTTCTTTGCGGC
* * * *
7307087 GAATT-CTCAAAAACGCCGCTAAATCCCTGAGCTTTAGCGGCGCTTCAT-A
66 G-CTTCCTCAAAAACGCCGCTAAA-GCCTGAGCATTAGCGGCGCTTC-TCC
* * * * *
7307136 AAAAACGCTGCTAAATCCTCGAATGCGCGGAAAACGACGTCGTTGGGC
1 AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGACATCGTTGGGC
7307184 CGAAGTTTTT
Statistics
Matches: 228, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
113 30 0.13
114 190 0.83
115 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (113 bp):
AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGACATCGTTGGGCTTAGGTTTCTTTGCGGC
GCTTCCTCAAAAACGCCGCTAAAGCCTGAGCATTAGCGGCGCTTCTCC
Found at i:7321653 original size:92 final size:93
Alignment explanation
Indices: 7321546--7321732 Score: 340
Period size: 93 Copynumber: 2.0 Consensus size: 93
7321536 AATTAGAATT
* *
7321546 ACAAAATTTCCATTAGCTGTTTCATTTCTAATTTAAAAG-AAAAAAAATTATTTACCTACCATCC
1 ACAAAATTGCCATTAGCTGTTTCATTTCTAATTTAAAAGAAAAAAAAATTATTTACCTACAATCC
7321610 ACTACTTAATAACTAAGGTCAAATTGCC
66 ACTACTTAATAACTAAGGTCAAATTGCC
*
7321638 ACAAAATTGCCATTAGTTGTTTCATTTCTAATTTAAAAGAAAAAAAAATTATTTACCTACAATCC
1 ACAAAATTGCCATTAGCTGTTTCATTTCTAATTTAAAAGAAAAAAAAATTATTTACCTACAATCC
7321703 ACTACTTAATAACTAAGGTCAAATTGCC
66 ACTACTTAATAACTAAGGTCAAATTGCC
7321731 AC
1 AC
7321733 TTAAAGCCCT
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 37 0.41
93 54 0.59
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (93 bp):
ACAAAATTGCCATTAGCTGTTTCATTTCTAATTTAAAAGAAAAAAAAATTATTTACCTACAATCC
ACTACTTAATAACTAAGGTCAAATTGCC
Found at i:7325571 original size:24 final size:24
Alignment explanation
Indices: 7325539--7325591 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
7325529 CAACTTTGCT
7325539 AACATGCCAAATAATTAGGCTTGA
1 AACATGCCAAATAATTAGGCTTGA
7325563 AACATGCCAAATAATTAGGCTTGA
1 AACATGCCAAATAATTAGGCTTGA
7325587 AACAT
1 AACAT
7325592 ACCTGGTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (24 bp):
AACATGCCAAATAATTAGGCTTGA
Found at i:7326590 original size:5 final size:5
Alignment explanation
Indices: 7326580--7326609 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
7326570 ATCTTTTGAA
7326580 AAAAG AAAAG AAAAG AAAAG AAAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAAA
7326610 AGATGGTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7328714 original size:19 final size:19
Alignment explanation
Indices: 7328677--7328716 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7328667 TTTTTGTCAA
7328677 TAATCATAGTTATCTTCAG
1 TAATCATAGTTATCTTCAG
7328696 TAATCATAGTTATCTTCAG
1 TAATCATAGTTATCTTCAG
7328715 TA
1 TA
7328717 TATATTCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (19 bp):
TAATCATAGTTATCTTCAG
Found at i:7333863 original size:29 final size:28
Alignment explanation
Indices: 7333798--7333856 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
7333788 AGTATAACTA
7333798 TAATATAAATAATTTTAGTAATTTAATTT
1 TAATATAAATAATTTTAGTAATTT-ATTT
7333827 TAATATAAATATAGTTTTAGT-ATTT-TTT
1 TAATATAAATA-A-TTTTAGTAATTTATTT
7333855 TA
1 TA
7333857 GTTATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
28 5 0.18
29 11 0.39
30 5 0.18
31 7 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (28 bp):
TAATATAAATAATTTTAGTAATTTATTT
Found at i:7337377 original size:141 final size:140
Alignment explanation
Indices: 7337123--7337397 Score: 351
Period size: 141 Copynumber: 1.9 Consensus size: 140
7337113 TCCAATTAAG
* * *
7337123 AGAGTAAGGGTTTTTAGCATTCTAATTAGCATGTTTCTTGAACAGCAAACGAGGAGTAGAAGAGA
1 AGAGTAAGGGTTTTTAGCACTCTAATTAGCAAGTTTCTTGAACA-CAAAAGAGGAGTAGAAGAGA
* *
7337188 GTATGGAAGGTGAAGCTATGTTGAGTGAGTGATGCTGGTTATTAAATTGTTGAAGCT-TTGATTG
65 GTATAGAAGGTGAAGCTATGTTGAGTAAGTGATGCTGGTTATTAAATTGTTGAAGCTCTT-ATTG
7337252 TTGTTGGTCAAA
129 TTGTTGGTCAAA
* * *
7337264 AGAGTAAGGGGTTTTTGGCACTCTGATT-GACAAGTTTTTTGAACA-AAAAGAGGGAGTAGAAGA
1 AGAGTAA-GGGTTTTTAGCACTCTAATTAG-CAAGTTTCTTGAACACAAAAGA-GGAGTAGAAGA
* * * * *
7337327 GAGTATAGAAGTTGAAGTTGTGTTGAGTAAGTGAT-CTTGGTTGTTGAATTGTTGAAGCTCTTAT
63 GAGTATAGAAGGTGAAGCTATGTTGAGTAAGTGATGC-TGGTTATTAAATTGTTGAAGCTCTTAT
7337391 TGTTGTT
127 TGTTGTT
7337398 ATTTTCCAAT
Statistics
Matches: 116, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
140 6 0.05
141 78 0.67
142 32 0.28
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.35
Consensus pattern (140 bp):
AGAGTAAGGGTTTTTAGCACTCTAATTAGCAAGTTTCTTGAACACAAAAGAGGAGTAGAAGAGAG
TATAGAAGGTGAAGCTATGTTGAGTAAGTGATGCTGGTTATTAAATTGTTGAAGCTCTTATTGTT
GTTGGTCAAA
Found at i:7341665 original size:17 final size:17
Alignment explanation
Indices: 7341643--7341678 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7341633 TACATGCCAT
7341643 AATCAAAATTAAGTTTC
1 AATCAAAATTAAGTTTC
7341660 AATCAAAATTAAGTTTC
1 AATCAAAATTAAGTTTC
7341677 AA
1 AA
7341679 CTTATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (17 bp):
AATCAAAATTAAGTTTC
Found at i:7349284 original size:36 final size:37
Alignment explanation
Indices: 7349239--7349310 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
7349229 GTCATGTCAA
* * *
7349239 CAAATAATTTTAAAA-TT-ATAAAATTATTAAAAAATT
1 CAAAGAATTTAAAAAGTTCATAAAATT-TAAAAAAATT
7349275 CAAAGAATTTAAAAAGTTCATAAAATTTAAAAAAAT
1 CAAAGAATTTAAAAAGTTCATAAAATTTAAAAAAAT
7349311 CATGAAGTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 13 0.42
37 10 0.32
38 8 0.26
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (37 bp):
CAAAGAATTTAAAAAGTTCATAAAATTTAAAAAAATT
Found at i:7349286 original size:18 final size:18
Alignment explanation
Indices: 7349250--7349313 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
7349240 AAATAATTTT
7349250 AAAATT-ATAAAATTATTAA
1 AAAATTCATAAAA-T-TTAA
7349269 AAAATTCA-AAGAATTTAA
1 AAAATTCATAA-AATTTAA
*
7349287 AAAGTTCATAAAATTTAA
1 AAAATTCATAAAATTTAA
*
7349305 AAAAATCAT
1 AAAATTCAT
7349314 GAAGTACACT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 25 0.64
19 11 0.28
20 3 0.08
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (18 bp):
AAAATTCATAAAATTTAA
Found at i:7357644 original size:34 final size:34
Alignment explanation
Indices: 7357600--7357708 Score: 93
Period size: 34 Copynumber: 3.3 Consensus size: 34
7357590 CCAACGGGAC
7357600 ACATTACATATCCTGTAATTCATTTTCCGATATG
1 ACATTACATATCCTGTAATTCATTTTCCGATATG
* * * *** * *
7357634 ACATTTCATATAC-ATAA-TCA---TGAAATTTAC
1 ACATTACATATCCTGTAATTCATTTTCCGATAT-G
7357664 ACATTACATATCCTGTAATTCATTTTCCGATATG
1 ACATTACATATCCTGTAATTCATTTTCCGATATG
*
7357698 ACATTTCATAT
1 ACATTACATAT
7357709 ACATAATCAT
Statistics
Matches: 52, Mismatches: 17, Indels: 12
0.64 0.21 0.15
Matches are distributed among these distances:
29 4 0.08
30 11 0.21
31 3 0.06
32 6 0.12
33 3 0.06
34 21 0.40
35 4 0.08
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.40
Consensus pattern (34 bp):
ACATTACATATCCTGTAATTCATTTTCCGATATG
Found at i:7357661 original size:22 final size:22
Alignment explanation
Indices: 7357631--7357725 Score: 63
Period size: 22 Copynumber: 4.4 Consensus size: 22
7357621 ATTTTCCGAT
*
7357631 ATGACATTTCATATACATAATC
1 ATGAAATTTCATATACATAATC
*
7357653 ATGAAATTTACACATTACAT-ATC
1 ATGAAATTT-CATA-TACATAATC
* * * * **
7357676 CTGTAA-TTCATTTTC-CGAT-
1 ATGAAATTTCATATACATAATC
*
7357695 ATGACATTTCATATACATAATC
1 ATGAAATTTCATATACATAATC
7357717 ATGAAATTT
1 ATGAAATTT
7357726 ACATTTTCCA
Statistics
Matches: 51, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
19 3 0.06
20 11 0.22
21 4 0.08
22 18 0.35
23 10 0.20
24 5 0.10
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.39
Consensus pattern (22 bp):
ATGAAATTTCATATACATAATC
Found at i:7357672 original size:64 final size:64
Alignment explanation
Indices: 7357598--7357728 Score: 262
Period size: 64 Copynumber: 2.0 Consensus size: 64
7357588 TTCCAACGGG
7357598 ACACATTACATATCCTGTAATTCATTTTCCGATATGACATTTCATATACATAATCATGAAATTT
1 ACACATTACATATCCTGTAATTCATTTTCCGATATGACATTTCATATACATAATCATGAAATTT
7357662 ACACATTACATATCCTGTAATTCATTTTCCGATATGACATTTCATATACATAATCATGAAATTT
1 ACACATTACATATCCTGTAATTCATTTTCCGATATGACATTTCATATACATAATCATGAAATTT
7357726 ACA
1 ACA
7357729 TTTTCCACAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (64 bp):
ACACATTACATATCCTGTAATTCATTTTCCGATATGACATTTCATATACATAATCATGAAATTT
Found at i:7364059 original size:6 final size:6
Alignment explanation
Indices: 7364048--7364084 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
7364038 GCATTGATGT
7364048 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA A
7364085 TGATTTTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:7379153 original size:19 final size:21
Alignment explanation
Indices: 7379120--7379158 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7379110 CTCTCAAAAA
*
7379120 ATTTCATTTTTTTAA-ATTTG
1 ATTTCATTTTATTAAGATTTG
7379140 ATTTC-TTTTATTAAGATTT
1 ATTTCATTTTATTAAGATTT
7379159 ATAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTTCATTTTATTAAGATTTG
Found at i:7379393 original size:41 final size:38
Alignment explanation
Indices: 7379348--7379438 Score: 92
Period size: 40 Copynumber: 2.3 Consensus size: 38
7379338 GCGGCATTTT
*
7379348 TAGCGGCGTTTGGACAAAAAACGCCACTAAAAATCGAGCAC
1 TAGCGGCGTTT-GA-AAAAAACGCCACTAAAAAT-AAGCAC
* * * *
7379389 TAGCGGCGCTTTTATAAAAACGCCGCTAAAAATAAGCAT
1 TAGCGGCG-TTTGAAAAAAACGCCACTAAAAATAAGCAC
*
7379428 TAGTGGCGTTT
1 TAGCGGCGTTT
7379439 TTTGAAAAGC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
38 3 0.07
39 11 0.26
40 17 0.40
41 9 0.21
42 3 0.07
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (38 bp):
TAGCGGCGTTTGAAAAAAACGCCACTAAAAATAAGCAC
Found at i:7379549 original size:41 final size:41
Alignment explanation
Indices: 7379495--7379817 Score: 395
Period size: 41 Copynumber: 7.9 Consensus size: 41
7379485 GAGTTTTTGG
*
7379495 GGCCTTTAGCGTCGTTTTTGAAGAAGCGCCGCTAATGCTTT
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTT
* **
7379536 GGCCTTTAGCGTCGTTTTTGAAGAAGCGCCGCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTT
* *
7379577 GGCCTTTAGGGGCGTTTTTGAAGAAGCGCCGCTAATGC-TC
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTT
* * *
7379617 GGTCCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTA
1 GG-CCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCT-TT
* * * *
7379660 GG-CTTTAGCGGCATTTTTGATGTAGCGCCGCTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTT
*
7379700 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC-TC
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTT
* * *
7379740 GGATCTTTAGTGGCGTTTTTG-AGAAAGCGCCGCTAATGCTCT
1 GG-CCTTTAGCGGCGTTTTTGAAG-AAGCGCCGCTAATGCTTT
* *
7379782 GGCCTTTAGCAGCG-TTTTGAAAAAAGCGCCGCTAAT
1 GGCCTTTAGCGGCGTTTTTG-AAGAAGCGCCGCTAAT
7379818 AATAATAAAA
Statistics
Matches: 243, Mismatches: 30, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
40 13 0.05
41 224 0.92
42 3 0.01
43 3 0.01
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.31
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTT
Found at i:7379634 original size:82 final size:82
Alignment explanation
Indices: 7379494--7379817 Score: 449
Period size: 82 Copynumber: 4.0 Consensus size: 82
7379484 TGAGTTTTTG
* * * *
7379494 GGGCCTTTAGCGTCGTTTTTGAAGAAGCGCCGCTAATGCTTTGGCCTTTAGCGTCGTTTTTGAAG
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAA
7379559 AAGCGCCGCTAATGCTC
66 AAGCGCCGCTAATGCTC
* *
7379576 GGGCCTTTAGGGGCGTTTTTGAAGAAGCGCCGCTAATGCTC-GGTCCTTTAGCGGCGTTTTTTAA
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGG-CCTTTAGCGGCGTTTTTGAA
7379640 AAAGCGCCGCTAATGCTC
65 AAAGCGCCGCTAATGCTC
* * * *
7379658 TAGG-CTTTAGCGGCATTTTTGATGTAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAA
1 -GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAA
*
7379722 GAAGCGCCGCTAATGCTC
65 AAAGCGCCGCTAATGCTC
** * *
7379740 GGATCTTTAGTGGCGTTTTTG-AGAAAGCGCCGCTAATGCTCTGGCCTTTAGCAGCG-TTTTGAA
1 GGGCCTTTAGCGGCGTTTTTGAAG-AAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTG-A
7379803 AAAAGCGCCGCTAAT
64 AAAAGCGCCGCTAAT
7379818 AATAATAAAA
Statistics
Matches: 215, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
81 9 0.04
82 202 0.94
83 4 0.02
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.31
Consensus pattern (82 bp):
GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAA
AAGCGCCGCTAATGCTC
Found at i:7379716 original size:123 final size:124
Alignment explanation
Indices: 7379497--7379817 Score: 461
Period size: 123 Copynumber: 2.6 Consensus size: 124
7379487 GTTTTTGGGG
* * * * *
7379497 CCTTTAGCGTCGTTTTTGAAGAAGCGCCGCTAATGCTTTGGCCTTTAGCGTCGTTTTTGAAGAAG
1 CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCATTTTTGAAGAAG
*
7379562 CGCCGCTAATGCTCGGGCCTTTAGGGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGG-T
66 CGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGAT
* * *
7379620 CCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTAGG-CTTTAGCGGCATTTTTGATGTA
1 CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT-GGCCTTTAGCGGCATTTTTGAAGAA
*
7379684 GCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGAT
65 GCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGAT
* * * * *
7379744 -CTTTAGTGGCGTTTTTGAGAAAGCGCCGCTAATGCTCTGGCCTTTAGCAGC-GTTTTGAAAAAA
1 CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCATTTTTG-AAGAA
7379807 GCGCCGCTAAT
65 GCGCCGCTAAT
7379818 AATAATAAAA
Statistics
Matches: 176, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
122 7 0.04
123 166 0.94
124 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (124 bp):
CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCATTTTTGAAGAAG
CGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGAT
Found at i:7380580 original size:7 final size:7
Alignment explanation
Indices: 7380558--7380596 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
7380548 AGGTTTATGT
7380558 GTTAGGG
1 GTTAGGG
*
7380565 GCTAGGG
1 GTTAGGG
7380572 GTTAGGG
1 GTTAGGG
*
7380579 GTTAGAG
1 GTTAGGG
*
7380586 GTTAGAG
1 GTTAGGG
7380593 GTTA
1 GTTA
7380597 AGATCAGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.28
Consensus pattern (7 bp):
GTTAGGG
Found at i:7380920 original size:15 final size:15
Alignment explanation
Indices: 7380895--7380932 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7380885 GTTCATATTT
7380895 TATGG-TTTAGGGAG
1 TATGGATTTAGGGAG
*
7380909 TATGGATTTAGGGAT
1 TATGGATTTAGGGAG
7380924 TAT-GATTTA
1 TATGGATTTA
7380933 AGGGTTGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAG
Found at i:7380936 original size:15 final size:14
Alignment explanation
Indices: 7380894--7380932 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
7380884 AGTTCATATT
*
7380894 TTATGGTTTAGGGA
1 TTATGATTTAGGGA
*
7380908 GTATGGATTTAGGGA
1 TTAT-GATTTAGGGA
7380923 TTATGATTTA
1 TTATGATTTA
7380933 AGGGTTGGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.44
Consensus pattern (14 bp):
TTATGATTTAGGGA
Found at i:7380958 original size:21 final size:22
Alignment explanation
Indices: 7380944--7380999 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
7380934 GGGTTGGGAT
7380944 TTAAGGTTTAGGGGTTAGGG-T
1 TTAAGGTTTAGGGGTTAGGGAT
* * **
7380965 TTAGGGGTTAGATGTTAGGGAT
1 TTAAGGTTTAGGGGTTAGGGAT
7380987 TTAAGGTTTAGGG
1 TTAAGGTTTAGGG
7381000 ATTCAGGGGT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (22 bp):
TTAAGGTTTAGGGGTTAGGGAT
Found at i:7380984 original size:14 final size:14
Alignment explanation
Indices: 7380948--7380975 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7380938 TGGGATTTAA
7380948 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
7380962 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
7380976 ATGTTAGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (14 bp):
GGTTTAGGGGTTAG
Found at i:7381574 original size:15 final size:15
Alignment explanation
Indices: 7381554--7381584 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7381544 ACTTTTTATT
7381554 TTAATTTATAAAAAA
1 TTAATTTATAAAAAA
7381569 TTAATTTATAAAAAA
1 TTAATTTATAAAAAA
7381584 T
1 T
7381585 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAATTTATAAAAAA
Found at i:7381916 original size:136 final size:138
Alignment explanation
Indices: 7381566--7381917 Score: 518
Period size: 136 Copynumber: 2.5 Consensus size: 138
7381556 AATTTATAAA
*
7381566 AAATTAATTTATAAAAAATAAAATAAAAAAATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCA
1 AAATCAATTTATAAAAAATAAAAT-AAAAAATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCA
7381631 AAATGAAAAAAAATTTTGCGGCGTTTTTATCCGCTAAAGGTAAGCAATAGCGACGTTTTTTATAA
65 AAATG-AAAAAAATTTTGCGGCGTTTTTAT-C-C--AAGGTAAGCAATAGCGACGTTTTTTATAA
7381696 AAACGCCGCAAAAT
125 AAACGCCGCAAAAT
*
7381710 AAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAA
1 AAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAA
7381775 AATGAAAAAAATTTTGCGGCG-TTTT-T-C-AGGTAAGCAATAGCGACG-TTTTTATAAAAAACG
66 AATGAAAAAAATTTTGCGGCGTTTTTATCCAAGGTAAGCAATAGCGACGTTTTTTAT-AAAAACG
7381835 CCGCAAAAAAT
130 CCGC--AAAAT
** * *
7381846 AAATCAATTTATAAAAAATAAAATAAAAAATTTTTA-ACATAATAAAACGGTGTCATTTTGTTCA
1 AAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGA-ATAGCAAAACGGCGTCGTTTTGTTCA
7381910 AAATGAAA
65 AAATGAAA
7381918 TAGCGGCGTT
Statistics
Matches: 197, Mismatches: 7, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
133 7 0.04
134 29 0.15
135 1 0.01
136 70 0.36
137 1 0.01
140 1 0.01
141 4 0.02
142 17 0.09
143 45 0.23
144 22 0.11
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (138 bp):
AAATCAATTTATAAAAAATAAAATAAAAAATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAA
AATGAAAAAAATTTTGCGGCGTTTTTATCCAAGGTAAGCAATAGCGACGTTTTTTATAAAAACGC
CGCAAAAT
Found at i:7381928 original size:106 final size:104
Alignment explanation
Indices: 7381810--7381999 Score: 285
Period size: 104 Copynumber: 1.8 Consensus size: 104
7381800 TCAGGTAAGC
*
7381810 AATAGCGACGTTTTT-ATAAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAATAAAATAAAA
1 AATAGCGACGTTTTTCAT-AAAAACGCCG-AAAAAATAAATCAATTTAT-AAAAACAAAATAAAA
7381874 AATTTTTA-ACATAATAAAACGGTGTCATTTTGTTCAAAATGA
63 AATTTTTAGA-ATAATAAAACGGTGTCATTTTGTTCAAAATGA
* * *
7381916 AATAGCGGCGTTTTTCATAAAAACGCCGTAAAAATAAATCAATTTATAAAAACAAAATAAAAATT
1 AATAGCGACGTTTTTCATAAAAACGCCGAAAAAATAAATCAATTTATAAAAACAAAATAAAAAAT
*
7381981 TTTTAGAATAGTAAAACGG
66 TTTTAGAATAATAAAACGG
7382000 CATGTTTTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
104 32 0.42
105 19 0.25
106 24 0.31
107 2 0.03
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.28
Consensus pattern (104 bp):
AATAGCGACGTTTTTCATAAAAACGCCGAAAAAATAAATCAATTTATAAAAACAAAATAAAAAAT
TTTTAGAATAATAAAACGGTGTCATTTTGTTCAAAATGA
Found at i:7382098 original size:22 final size:24
Alignment explanation
Indices: 7382071--7382119 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
7382061 TAGCGGTCCG
*
7382071 CAAAAAA-ATTAATTTATAAAAAA
1 CAAAAAATATCAATTTATAAAAAA
7382094 CAAAAAATAAATCAATTTATAAAAAA
1 CAAAAAAT--ATCAATTTATAAAAAA
7382120 ACAATAGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
26 15 0.68
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (24 bp):
CAAAAAATATCAATTTATAAAAAA
Found at i:7385732 original size:23 final size:23
Alignment explanation
Indices: 7385698--7386151 Score: 228
Period size: 23 Copynumber: 19.9 Consensus size: 23
7385688 AAATTGAAGT
*
7385698 GTTGCTGCAAATTGAAGTATTTA
1 GTTGCTGCAAATTGAAGTGTTTA
*
7385721 GTTGCTGGAAATTG-AGATGTTTTA
1 GTTGCTGCAAATTGAAG-TG-TTTA
* * * *
7385745 -TCGCTG-TAATTGAGGTGTATA
1 GTTGCTGCAAATTGAAGTGTTTA
** * **
7385766 AATGTTGTTAATTGATA-TGTTTA
1 GTTGCTGCAAATTGA-AGTGTTTA
** *
7385789 ACTGCTGCAAATTTAAGTGTTTA
1 GTTGCTGCAAATTGAAGTGTTTA
** *
7385812 AATGCTGTAAATTGAAGTGTTTAA
1 GTTGCTGCAAATTGAAGTGTTT-A
7385836 G-TGCTGCAAATTGAAGTGTTTA
1 GTTGCTGCAAATTGAAGTGTTTA
7385858 GTTGCTAG-AAATTG-AGATGTTTTA
1 GTTGCT-GCAAATTGAAG-TG-TTTA
* * *
7385882 -TTGCTG-TAATTGAGGTGTATA
1 GTTGCTGCAAATTGAAGTGTTTA
** * ** *
7385903 AATGTTGTTAATTGATA-TGTTAA
1 GTTGCTGCAAATTGA-AGTGTTTA
*
7385926 G-TGCTGCAAATTTAAGTGTTTA
1 GTTGCTGCAAATTGAAGTGTTTA
** *
7385948 AATGCTGTAAATTGAAGTGTTTAA
1 GTTGCTGCAAATTGAAGTGTTT-A
*
7385972 G-TGCTGCAAATTGAAGTATTTA
1 GTTGCTGCAAATTGAAGTGTTTA
*
7385994 GTTGCTGGAAATTG-AGATGTTTTA
1 GTTGCTGCAAATTGAAG-TG-TTTA
* * * *
7386018 -TCGCTG-TAATTGAGGTGTATA
1 GTTGCTGCAAATTGAAGTGTTTA
** * **
7386039 AATGTTGTTAATTGATA-TGTTTAA
1 GTTGCTGCAAATTGA-AGTGTTT-A
7386063 G-TGCTGCAAATTGAAGTGTTTAA
1 GTTGCTGCAAATTGAAGTGTTT-A
7386086 G-TGCTGCAAATTGAAGTGTTTA
1 GTTGCTGCAAATTGAAGTGTTTA
*
7386108 GTTGTTGCAAATTG-AGATGTTTTA
1 GTTGCTGCAAATTGAAG-TG-TTTA
* *
7386132 -TCGCTGTAAATTGAAGTGTT
1 GTTGCTGCAAATTGAAGTGTT
7386152 AAAGTGCTAC
Statistics
Matches: 339, Mismatches: 60, Indels: 65
0.73 0.13 0.14
Matches are distributed among these distances:
21 10 0.03
22 64 0.19
23 243 0.72
24 22 0.06
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (23 bp):
GTTGCTGCAAATTGAAGTGTTTA
Found at i:7385860 original size:137 final size:137
Alignment explanation
Indices: 7385700--7386122 Score: 751
Period size: 137 Copynumber: 3.1 Consensus size: 137
7385690 ATTGAAGTGT
7385700 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
1 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
*
7385765 AAATGTTGTTAATTGATATGTTTAACTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGT
66 AAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGT
7385830 GTTTAAG
131 GTTTAAG
* * *
7385837 TGCTGCAAATTGAAGTGTTTAGTTGCTAGAAATTGAGATGTTTTATTGCTGTAATTGAGGTGTAT
1 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
7385902 AAATGTTGTTAATTGATATG-TTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGT
66 AAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGT
7385966 GTTTAAG
131 GTTTAAG
7385973 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
1 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
* * *
7386038 AAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGT
66 AAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGT
7386103 GTTT-AG
131 GTTTAAG
*
7386109 TTGTTGCAAATTGA
1 -TGCTGCAAATTGA
7386123 GATGTTTTAT
Statistics
Matches: 273, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
136 134 0.49
137 139 0.51
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.41
Consensus pattern (137 bp):
TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
AAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGT
GTTTAAG
Found at i:7386117 original size:46 final size:45
Alignment explanation
Indices: 7385700--7386151 Score: 329
Period size: 46 Copynumber: 9.9 Consensus size: 45
7385690 ATTGAAGTGT
* ** *
7385700 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTG-AGATGTTTTA-
1 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TG-TTTAG
* * * * * *
7385745 TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATA-TGTTTAAC
1 T-GCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGTTT-AG
*
7385791 TGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAG
1 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTT-AG
** *
7385837 TGCTGCAAATTGAAGTGTTTAGTTGCTAG-AAATTG-AGATGTTTTAT
1 TGCTGCAAATTGAAGTGTTTAAATGCT-GTAAATTGAAG-TG-TTTAG
* * * * * *
7385883 TGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATA-TGTTAAG
1 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGTTTAG
*
7385927 TGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAG
1 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTT-AG
* ** *
7385973 TGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTG-AGATGTTTTA-
1 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TG-TTTAG
* * * * *
7386018 TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATA-TGTTTAAG
1 T-GCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGTTT-AG
* *
7386064 TGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAG
1 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAG
* *
7386109 TTGTTGCAAATTG-AGATGTTT-TATCGCTGTAAATTGAAGTGTT
1 -TGCTGCAAATTGAAG-TGTTTAAAT-GCTGTAAATTGAAGTGTT
7386152 AAAGTGCTAC
Statistics
Matches: 318, Mismatches: 61, Indels: 55
0.73 0.14 0.13
Matches are distributed among these distances:
44 16 0.05
45 117 0.37
46 175 0.55
47 10 0.03
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (45 bp):
TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAG
Found at i:7387169 original size:84 final size:86
Alignment explanation
Indices: 7387042--7387203 Score: 249
Period size: 84 Copynumber: 1.9 Consensus size: 86
7387032 TTTTCGTGAC
* * *
7387042 TTTTAGTGGCATTTTTGGAGAAAGCGTCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAA
1 TTTTAGTGGCATTTTGGGAGAAAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGGGAAA
7387107 AGCACCGCTAAAGGTTTTGGT
66 AGCACCGCTAAAGGTTTTGGT
*
7387128 TTTTAGTGGCATTTGTGGGA-AAAGCG-C-CTAAAGGTCATGGTCTTTAGCAGTGTTTGTGGGAA
1 TTTTAGTGGCATTT-TGGGAGAAAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGGGAA
*
7387190 AAGCGCCGCTAAAG
65 AAGCACCGCTAAAG
7387204 TTAGCGACAC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
84 45 0.64
85 1 0.01
86 20 0.29
87 4 0.06
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (86 bp):
TTTTAGTGGCATTTTGGGAGAAAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGGGAAA
AGCACCGCTAAAGGTTTTGGT
Found at i:7387174 original size:41 final size:42
Alignment explanation
Indices: 7387043--7387203 Score: 164
Period size: 43 Copynumber: 3.8 Consensus size: 42
7387033 TTTCGTGACT
* * *
7387043 TTTAGTGGCATTT-TTGGAGAAAGCGTCGCTAAAGGTCCTGGTC
1 TTTAGCGGCATTTGTGGGA-AAAGCG-CGCTAAAGGTCATGGTC
* * ** *
7387086 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTTTTGGTT
1 TTTAGCGGCATTTGTGGGAAAAGC-GCGCTAAAGGTCATGGTC
*
7387129 TTTAGTGGCATTTGTGGGAAAAGCGC-CTAAAGGTCATGGTC
1 TTTAGCGGCATTTGTGGGAAAAGCGCGCTAAAGGTCATGGTC
* **
7387170 TTTAGCAGTGTTTGTGGGAAAAGCGCCGCTAAAG
1 TTTAGCGGCATTTGTGGGAAAAGCG-CGCTAAAG
7387204 TTAGCGACAC
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
41 33 0.34
42 2 0.02
43 58 0.60
44 4 0.04
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (42 bp):
TTTAGCGGCATTTGTGGGAAAAGCGCGCTAAAGGTCATGGTC
Found at i:7387302 original size:22 final size:22
Alignment explanation
Indices: 7387274--7387317 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7387264 TTAGCGGCGC
* *
7387274 TAAAAAGCGCCGCTAAAGGCCT
1 TAAAAAGCGCCACTAAAAGCCT
7387296 TAAAAAGCGCCACTAAAAGCCT
1 TAAAAAGCGCCACTAAAAGCCT
7387318 GTTTCGGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14
Consensus pattern (22 bp):
TAAAAAGCGCCACTAAAAGCCT
Found at i:7392927 original size:9 final size:9
Alignment explanation
Indices: 7392913--7392976 Score: 94
Period size: 9 Copynumber: 7.2 Consensus size: 9
7392903 TTTGGTTAAA
7392913 AATTACCCG
1 AATTACCCG
7392922 AATTACCCG
1 AATTACCCG
7392931 AATTACCCG
1 AATTACCCG
*
7392940 -ATTAACCG
1 AATTACCCG
*
7392948 AATTAACCG
1 AATTACCCG
7392957 AATTACCCG
1 AATTACCCG
*
7392966 AATTATCCG
1 AATTACCCG
7392975 AA
1 AA
7392977 AATTACCCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
8 7 0.14
9 44 0.86
ACGTcount: A:0.38, C:0.28, G:0.11, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:7395011 original size:220 final size:219
Alignment explanation
Indices: 7394621--7395021 Score: 615
Period size: 220 Copynumber: 1.8 Consensus size: 219
7394611 GTTAAACGAG
* *
7394621 AAATCGAAACCCAGCACCTTAGGGTACATTCCTCAAATTTCCAAACGCAAAACATTGCCTTATTT
1 AAATCGAAACCCAGCAACTTAGGGCACATTCCTCAAATTTCCAAACGCAAAACATTGCCTTATTT
** * *
7394686 TGAAATTTTTTTAGAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTT
66 TGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTT
* * * *
7394751 AGGGCATGTTTTCTCGAATTTCCAAATGCAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATA
131 AGGGCACGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTCATTTAGAAATTTTTAAAAGGATA
7394816 TTTAGCCATTTGGTTGAATGAGAA
196 TTTAGCCATTTGGTTGAATGAGAA
* ** * *
7394840 AAATCGACACCCAGCAACTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTGCCTTAT
1 AAATCGAAACCCAGCAACTTAGGGCA-CATTCCTCAAATTT-CCAAACGCAAAACATTGCCTTAT
*
7394905 TTT-AAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCTAGCACC
64 TTTGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACC
* *
7394969 TTAGGGCACGTTTTCTCGAATTTCCAAAAGCTAAATATTGCCTCATTTAGAAA
129 TTAGGGCACGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTCATTTAGAAA
7395022 AATTTTCTTT
Statistics
Matches: 162, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
219 23 0.14
220 113 0.70
221 26 0.16
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (219 bp):
AAATCGAAACCCAGCAACTTAGGGCACATTCCTCAAATTTCCAAACGCAAAACATTGCCTTATTT
TGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTT
AGGGCACGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTCATTTAGAAATTTTTAAAAGGATA
TTTAGCCATTTGGTTGAATGAGAA
Found at i:7395023 original size:111 final size:111
Alignment explanation
Indices: 7394621--7395027 Score: 588
Period size: 111 Copynumber: 3.7 Consensus size: 111
7394611 GTTAAACGAG
* * * * *
7394621 AAATCGAAACCCAGCACCTTAGGGTAC-ATTCCTCAAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
** *
7394685 TTGAAATTTTTTTAGAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* *
7394731 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAATGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
* *
7394796 TTG--AAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGAGAA
66 TTGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* *
7394840 AAATCGACACCCAGCAACTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTGCCTTAT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTT-CCAAACGCAAAACATTGCCTTAT
7394905 TTT-AAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
65 TTTGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * * * *
7394951 AAATCAACACCTAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAAAGCTAAATATTGCCTCATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
7395016 TAGAAAAATTTT
66 TTGAAAAATTTT
7395028 CTTTTTTTGA
Statistics
Matches: 267, Mismatches: 25, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
109 76 0.28
110 70 0.26
111 121 0.45
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (111 bp):
AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:7395169 original size:4 final size:4
Alignment explanation
Indices: 7395160--7395267 Score: 96
Period size: 4 Copynumber: 26.8 Consensus size: 4
7395150 ATACAATAAC
* * ** * *
7395160 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAAA AAAT GGAC ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7395208 AAAT AAAT AAAT AAAT AAAT GAACAT AAAGT -AA- AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT -AA-AT AAA-T AAAT AAAT AAAT AAAT AAAT
*
7395257 AAAA AAAT AAA
1 AAAT AAAT AAA
7395268 ATAATAATAA
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
3 4 0.05
4 69 0.82
5 9 0.11
6 2 0.02
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:7395268 original size:8 final size:8
Alignment explanation
Indices: 7395160--7395284 Score: 54
Period size: 8 Copynumber: 14.9 Consensus size: 8
7395150 ATACAATAAC
*
7395160 AAATAAAT
1 AAATAAAA
7395168 AAATAAATA
1 AAATAAA-A
*
7395177 AACT-AAA
1 AAATAAAA
*
7395184 ACATAAAA
1 AAATAAAA
** *
7395192 AAATGGAC
1 AAATAAAA
* *
7395200 ATATAAAT
1 AAATAAAA
*
7395208 AAATAAAT
1 AAATAAAA
*
7395216 AAATAAAT
1 AAATAAAA
7395224 AAATGAACATA
1 AAAT-AA-A-A
*
7395235 AAGTAAAAA
1 AAAT-AAAA
*
7395244 TAAATAAAT
1 -AAATAAAA
7395253 AAATAAAA
1 AAATAAAA
7395261 AAATAAAA
1 AAATAAAA
*
7395269 TAATAATAA
1 AAATAA-AA
*
7395278 CAATAAA
1 AAATAAA
7395285 GGAAAATAGA
Statistics
Matches: 89, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
7 3 0.03
8 60 0.67
9 16 0.18
10 5 0.06
11 5 0.06
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (8 bp):
AAATAAAA
Found at i:7395282 original size:17 final size:17
Alignment explanation
Indices: 7395202--7395284 Score: 64
Period size: 16 Copynumber: 4.8 Consensus size: 17
7395192 AAATGGACAT
*
7395202 ATAAATAAAT-AAATAA
1 ATAAAAAAATAAAATAA
* *
7395218 ATAAATAAATGAACATAA
1 ATAAAAAAAT-AAAATAA
7395236 AGTAAAAATAA-ATAAATAA
1 A-TAAAAA-AATA-AAATAA
7395255 ATAAAAAAATAAAAT-A
1 ATAAAAAAATAAAATAA
*
7395271 ATAATAACAATAAA
1 ATAA-AAAAATAAA
7395285 GGAAAATAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
16 15 0.27
17 14 0.25
18 14 0.25
19 11 0.20
20 2 0.04
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
ATAAAAAAATAAAATAA
Found at i:7397426 original size:44 final size:45
Alignment explanation
Indices: 7397311--7397530 Score: 177
Period size: 45 Copynumber: 4.9 Consensus size: 45
7397301 AAATTTGCCA
*
7397311 TCTTCGATCTGC-TCTGCTGTCAGTACAAAAAGGCAAGATCT-GTT
1 TCTTCGATCTGCTTC-GCTGTCAGTACAAGAAGGCAAGATCTGGTT
* *
7397355 ATCTT-TAGTCTGCTCCGCTGTCAGTACAAGAAGGCAAGA-CTGGTT
1 -TCTTCGA-TCTGCTTCGCTGTCAGTACAAGAAGGCAAGATCTGGTT
** * * *
7397400 TCTTCGATCTGCTTCGCCATCAGTACAGGAAGGCATA-ATCTGCTA
1 TCTTCGATCTGCTTCGCTGTCAGTACAAGAAGGCA-AGATCTGGTT
* * *
7397445 CCTT-TAGTCTG-TTCCGCTGTCAGTACAGGAAGGCAAGA-CTGGTT
1 TCTTCGA-TCTGCTT-CGCTGTCAGTACAAGAAGGCAAGATCTGGTT
* * * * * *
7397489 TCTTCGATCTGTTTCACTGTTAATGCAGGAAGGCAAGATCTG
1 TCTTCGATCTGCTTCGCTGTCAGTACAAGAAGGCAAGATCTG
7397531 CTATCTTTGA
Statistics
Matches: 141, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 67 0.48
45 73 0.52
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (45 bp):
TCTTCGATCTGCTTCGCTGTCAGTACAAGAAGGCAAGATCTGGTT
Found at i:7397462 original size:89 final size:89
Alignment explanation
Indices: 7397311--7397499 Score: 274
Period size: 89 Copynumber: 2.1 Consensus size: 89
7397301 AAATTTGCCA
** * *
7397311 TCTTCGATCTGCTCTGCTGTCAGTACAAAAAGGCAAGATCTGTTATCTTTAGTCTGCTCCGCTGT
1 TCTTCGATCTGCTCTGCCATCAGTACAAAAAGGCAAGATCTGCTACCTTTAGTCTGCTCCGCTGT
7397376 CAGTACAAGAAGGCAAGACTGGTT
66 CAGTACAAGAAGGCAAGACTGGTT
** *
7397400 TCTTCGATCTGCT-TCGCCATCAGTACAGGAAGGCATA-ATCTGCTACCTTTAGTCTGTTCCGCT
1 TCTTCGATCTGCTCT-GCCATCAGTACAAAAAGGCA-AGATCTGCTACCTTTAGTCTGCTCCGCT
*
7397463 GTCAGTACAGGAAGGCAAGACTGGTT
64 GTCAGTACAAGAAGGCAAGACTGGTT
7397489 TCTTCGATCTG
1 TCTTCGATCTG
7397500 TTTCACTGTT
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
88 1 0.01
89 88 0.98
90 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (89 bp):
TCTTCGATCTGCTCTGCCATCAGTACAAAAAGGCAAGATCTGCTACCTTTAGTCTGCTCCGCTGT
CAGTACAAGAAGGCAAGACTGGTT
Found at i:7397518 original size:89 final size:89
Alignment explanation
Indices: 7397340--7397538 Score: 283
Period size: 89 Copynumber: 2.2 Consensus size: 89
7397330 TCAGTACAAA
*
7397340 AAGGCAAGATCTGTTATCTTTAGTCTGCTCCGCTGTCAGTACAAGAAGGCAAGACTGGTTTCTTC
1 AAGGCAAGATCTGCTATCTTTAGTCTGCTCCGCTGTCAGTACAAGAAGGCAAGACTGGTTTCTTC
* *
7397405 GATCTGCTTCGCCATCAGTACAGG
66 GATCTGCTTCACCATCAATACAGG
* * *
7397429 AAGGCATA-ATCTGCTACCTTTAGTCTGTTCCGCTGTCAGTACAGGAAGGCAAGACTGGTTTCTT
1 AAGGCA-AGATCTGCTATCTTTAGTCTGCTCCGCTGTCAGTACAAGAAGGCAAGACTGGTTTCTT
* ** * *
7397493 CGATCTGTTTCACTGTTAATGCAGG
65 CGATCTGCTTCACCATCAATACAGG
7397518 AAGGCAAGATCTGCTATCTTT
1 AAGGCAAGATCTGCTATCTTT
7397539 GACCTACTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
88 1 0.01
89 94 0.98
90 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (89 bp):
AAGGCAAGATCTGCTATCTTTAGTCTGCTCCGCTGTCAGTACAAGAAGGCAAGACTGGTTTCTTC
GATCTGCTTCACCATCAATACAGG
Found at i:7397611 original size:44 final size:44
Alignment explanation
Indices: 7397563--7398273 Score: 350
Period size: 44 Copynumber: 16.2 Consensus size: 44
7397553 CAACCGAGAG
* * *
7397563 AGGCAACGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGTAGGA
1 AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* *
7397607 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTATCAATGCAGGA
1 AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * *
7397651 AGGCAAGATCTGTTATCTTCAACCAGCTTCGCT-ACAA--CAGAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCTTCGCTGTCAATGCAG-GA
* *
7397694 GAGGCAAGGTTTGTATCTTCGACCTGCTTAGCTGTCAATACAGGA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * * * ** *
7397739 AGGCAAGATCTGCTATCTTCAACCAGCTCCACCAT-AA--CCGAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCTTCGCTGTCAATGCAG-GA
* *
7397782 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
7397827 AGACAAGATCTGTTATCTTCAACCAGCTCCGCT-ACAA--CCGAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCTTCGCTGTCAATGCAG-GA
* *
7397870 GAGGCAAGGTTTGTATCTTCGACCTACTTCGCTGTCAATACAGGA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * * *
7397915 AGGCAAGATTTGCTGTCTTCAACCAGCTCTAC-C--ACAA--CCGAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCT-T-CGCTGTCAATGCAG-GA
* * *
7397958 GAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGCCAATGCAGGA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * * * *
7398003 AGGCAAGATCTGTTATCTTCTACCAGCTCCGCT-ACAA--CCGAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCTTCGCTGTCAATGCAG-GA
* ** *
7398046 GAGGCAAGGTTTGTATCTTCGACCTGCTTCACTGTCAATATAGAA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
** * * * * * * * *
7398091 AGATAAGATCTGTTGTCTTCAACCAGCTCCGCT-ACAA--CCGAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCTTCGCTGTCAATGCAG-GA
* * **
7398134 GAGGCAAGGTTTGTGTCTTTGACCTGCTTCATTGTCAATGCAGGA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * * ** * *
7398179 AGGCAAGATCTGTTATCTTCAACCAGCTCCGC-CACAA-CCAAGA
1 AGGCAAGGTTTG-TATCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * *
7398222 GAGGCAAGGTTTTTGTTTTCGACCTGCTTCGCTGTAAATGCAGGA
1 -AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
7398267 AGGCAAG
1 AGGCAAG
7398274 ATCTGTTGTC
Statistics
Matches: 485, Mismatches: 138, Indels: 88
0.68 0.19 0.12
Matches are distributed among these distances:
41 1 0.00
42 14 0.03
43 118 0.24
44 222 0.46
45 115 0.24
46 14 0.03
47 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (44 bp):
AGGCAAGGTTTGTATCTTCGACCTGCTTCGCTGTCAATGCAGGA
Found at i:7397655 original size:88 final size:88
Alignment explanation
Indices: 7397607--7398505 Score: 1124
Period size: 88 Copynumber: 10.2 Consensus size: 88
7397597 CAATGTAGGA
*
7397607 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTGTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
* *
7397672 ACCAGCTTCGCTACAACAGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* * * *
7397695 AGGCAAGGTTTGTATCTTCGACCTGCTTAGCTGTCAATACAGGAAGGCAAGATCTGCTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
* * *
7397760 ACCAGCTCCACCATAACCGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* *
7397783 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGACAAGATCTGTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
7397848 ACCAGCTCCGCTACAACCGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* * * * * *
7397871 AGGCAAGGTTTGTATCTTCGACCTACTTCGCTGTCAATACAGGAAGGCAAGATTTGCTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
** *
7397936 ACCAGCTCTACCACAACCGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* * *
7397959 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGCCAATGCAGGAAGGCAAGATCTGTTATCTTCT
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
7398024 ACCAGCTCCGCTACAACCGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* * ** * ** *
7398047 AGGCAAGGTTTGTATCTTCGACCTGCTTCACTGTCAATATAGAAAGATAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
7398112 ACCAGCTCCGCTACAACCGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* **
7398135 AGGCAAGGTTTGTGTCTTTGACCTGCTTCATTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
* *
7398200 ACCAGCTCCGCCACAACCAAGAG
66 ACCAGCTCCGCTACAACCGAGAG
* * * *
7398223 AGGCAAGGTTTTTGTTTTCGACCTGCTTCGCTGTAAATGCAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
*
7398288 ACCAGCTCCACTACAACCGAGAG
66 ACCAGCTCCGCTACAACCGAGAG
** * * *** * *
7398311 AGGCAAGGTTTGTGTCTTTTATCTGCTTCGCTGTTAACATAGGAAGGCAAGATCTGCTATCTTTA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
**
7398376 ACCAGCTCCAATACAACCGATG-G
66 ACCAGCTCCGCTACAACCGA-GAG
* * * * * * * ** * *
7398399 AGGCAACGCTT-TGT-TTCTGATCTGCTTCGTTGTCAATGCAGAAAAGTAAGATCTACTATTTTT
1 AGGCAAGGTTTGTGTCTTC-GACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTC
* *
7398462 AACCAGCTCCACTGCAACCGATG-G
65 AACCAGCTCCGCTACAACCGA-GAG
* *
7398486 AGACAAGGTTT-TGTTTTCGA
1 AGGCAAGGTTTGTGTCTTCGA
7398506 TCTTCACTGA
Statistics
Matches: 702, Mismatches: 106, Indels: 7
0.86 0.13 0.01
Matches are distributed among these distances:
86 2 0.00
87 72 0.10
88 627 0.89
89 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (88 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCA
ACCAGCTCCGCTACAACCGAGAG
Found at i:7399749 original size:13 final size:15
Alignment explanation
Indices: 7399726--7399764 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
7399716 TCTTGGCCGC
7399726 CTCTCCTTTTTCTTTT
1 CTCT-CTTTTTCTTTT
7399742 -T-TCTTTTTCTTTT
1 CTCTCTTTTTCTTTT
7399755 CTCTCTTTTT
1 CTCTCTTTTT
7399765 TTGAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 11 0.52
14 2 0.10
15 8 0.38
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
CTCTCTTTTTCTTTT
Found at i:7404241 original size:109 final size:109
Alignment explanation
Indices: 7404008--7404418 Score: 576
Period size: 111 Copynumber: 3.8 Consensus size: 109
7403998 ATATTTGGCT
* * * * * * * *
7404008 ATTTGGTTAAACGAG--AAATCGAAACCCAACATCTTAGGGTACG-TTCCTCAAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
7404070 CAAAACATTGCCTTATTTTGAAATTTTTTTAAAAGGATATTAAGCC
66 CAAAACATTGCCTTATTTTGAAA--TTTTTAAAAGGATATTAAGCC
* *
7404116 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATATTTTCTCGAATATCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
* *
7404181 CAAAACATTGTCTTATTTTGAAATTTTTAAAAGGATATTTAGCC
66 CAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTAAGCC
*
7404225 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTT-CCAAAC
* *
7404290 GCAAAACATTGCCTTATTTTAAAAAATTTTAAAAGGATATTAAGCC
65 GCAAAACATTGCCTTATTTT-GAAATTTTTAAAAGGATATTAAGCC
* * *
7404336 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGAGCACGTTTTCTCGAATTTCCAAAAG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
* * *
7404401 CTAAATATTGCCTCATTT
66 CAAAACATTGCCTTATTT
7404419 ACAAAAATTT
Statistics
Matches: 272, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
108 14 0.05
109 75 0.28
110 68 0.25
111 115 0.42
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (109 bp):
ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
CAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTAAGCC
Found at i:7404569 original size:4 final size:4
Alignment explanation
Indices: 7404560--7404650 Score: 73
Period size: 4 Copynumber: 22.8 Consensus size: 4
7404550 ATACAACAAC
* ** * *
7404560 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAA- AAAT GGAC ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7404607 AAAT AAAT AAAT GAACAT AAAGT -AA- AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT -AA-AT AAA-T AAAT AAAT AAAT AAAT AAAT AAA
7404651 ATAATAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
3 7 0.10
4 52 0.74
5 9 0.13
6 2 0.03
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:7404665 original size:29 final size:29
Alignment explanation
Indices: 7404603--7404667 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
7404593 ATGGACATAT
* *
7404603 AAATAAATAAATAAATGAACATAAAGTAA
1 AAATAAATAAATAAATGAAAATAAAATAA
7404632 AAATAAATAAATAAAT-AAAATAATAATAA
1 AAATAAATAAATAAATGAAAATAA-AATAA
*
7404661 CAATAAA
1 AAATAAA
7404668 GGAAAATAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (29 bp):
AAATAAATAAATAAATGAAAATAAAATAA
Found at i:7404667 original size:25 final size:25
Alignment explanation
Indices: 7404560--7404660 Score: 99
Period size: 23 Copynumber: 4.2 Consensus size: 25
7404550 ATACAACAAC
*
7404560 AAATAAATAAAT-AA-ATAAACTAA
1 AAATAAATAAATGAACATAAAATAA
*
7404583 AACATAAA-AAATGGACATATAAAT--
1 AA-ATAAATAAATGAACATA-AAATAA
*
7404607 AAATAAATAAATGAACATAAAGTAA
1 AAATAAATAAATGAACATAAAATAA
7404632 AAATAAATAAAT-AA-ATAAAATAA
1 AAATAAATAAATGAACATAAAATAA
*
7404655 TAATAA
1 AAATAA
7404661 CAATAAAGGA
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
23 27 0.42
24 20 0.31
25 15 0.23
26 3 0.05
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (25 bp):
AAATAAATAAATGAACATAAAATAA
Found at i:7406065 original size:31 final size:31
Alignment explanation
Indices: 7406027--7406088 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7406017 AGGCAAATTA
7406027 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
7406058 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
7406089 AAAATTACCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:7416249 original size:20 final size:20
Alignment explanation
Indices: 7416203--7416251 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
7416193 TGGAGTAGGA
* *
7416203 ATATCGATACCTTAGGAAAT
1 ATATTGATACCTTAAGAAAT
*
7416223 ATTTTGATACCTTAAGAAA-
1 ATATTGATACCTTAAGAAAT
7416242 AGTATTGATA
1 A-TATTGATA
7416252 TTGGATCAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (20 bp):
ATATTGATACCTTAAGAAAT
Found at i:7428822 original size:31 final size:31
Alignment explanation
Indices: 7428784--7428842 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
7428774 CATTGACATG
* *
7428784 GTTCTCCATTTTCATCGTTCGTGTATTATAT
1 GTTCTCCATTTTCACCATTCGTGTATTATAT
7428815 GTTCTCCATTTTCACCATTCGTGTATTA
1 GTTCTCCATTTTCACCATTCGTGTATTA
7428843 GCATATCTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.17, C:0.22, G:0.12, T:0.49
Consensus pattern (31 bp):
GTTCTCCATTTTCACCATTCGTGTATTATAT
Found at i:7429343 original size:28 final size:28
Alignment explanation
Indices: 7429295--7429370 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
7429285 TAGTTGATGC
* * *
7429295 AGACTCTTGCTT-CAAGAATAGTCCCTGT
1 AGACTCTTTCTTGAAAG-ATAGTCCATGT
* *
7429323 GGACTCTTTCTTGAAAGATAGTTCATGT
1 AGACTCTTTCTTGAAAGATAGTCCATGT
7429351 AGACTCTTTCTTGAAAGATA
1 AGACTCTTTCTTGAAAGATA
7429371 ATTTATGCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 38 0.93
29 3 0.07
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (28 bp):
AGACTCTTTCTTGAAAGATAGTCCATGT
Found at i:7429440 original size:28 final size:28
Alignment explanation
Indices: 7429324--7429442 Score: 91
Period size: 28 Copynumber: 4.2 Consensus size: 28
7429314 AGTCCCTGTG
* *
7429324 GACTCTTTCTTGAAAGATAGTTCATGTA
1 GACTCTTGCTTGAAAGATAATTCATGTA
* * *
7429352 GACTCTTTCTTGAAAGATAATTTATGCA
1 GACTCTTGCTTGAAAGATAATTCATGTA
* * * *
7429380 -AGCTCTTGATTGAAA-ACAAATCCCTGTA
1 GA-CTCTTGCTTGAAAGA-TAATTCATGTA
* *
7429408 AACTCTTGCTTGAAAG-TAAATTCATGTG
1 GACTCTTGCTTGAAAGAT-AATTCATGTA
7429436 GACTCTT
1 GACTCTT
7429443 ACTTAAATGA
Statistics
Matches: 70, Mismatches: 16, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
27 2 0.03
28 67 0.96
29 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (28 bp):
GACTCTTGCTTGAAAGATAATTCATGTA
Found at i:7431825 original size:625 final size:625
Alignment explanation
Indices: 7430629--7431857 Score: 2242
Period size: 625 Copynumber: 2.0 Consensus size: 625
7430619 GCCACTCTCA
7430629 TATTGATCATTCACCACTTTCCATACAAGCACTAACCCAAATTAAGATAAAATATTAAAAATAAC
1 TATTGATCATTCACCACTTTCCATACAAGCACTAACCCAAATTAAGATAAAATATTAAAAATAAC
7430694 CTTTTAGAAAAATTGACAATCATCATTAATGCCCAATTCATCCCCCAAATTTTACAATTCGGTAC
66 CTTTTAGAAAAATTGACAATCATCATTAATGCCCAATTCATCCCCCAAATTTTACAATTCGGTAC
7430759 AAATAGGATGTCGTAAGATCTAATTAAAACATATAAAATAACTAAGGGTCGTCAATTCAATATGG
131 AAATAGGATGTCGTAAGATCTAATTAAAACATATAAAATAACTAAGGGTCGTCAATTCAATATGG
* *
7430824 CCAAGTTTTGACCAAAATTTTGGGTGTGACAAAATTGATGTGAAATTATTAGAAATTAAGCTTAG
196 CCAAGTTTTGACCAAAATTTTGGGTGAGACAAAATTGATATGAAATTATTAGAAATTAAGCTTAG
7430889 ATTAAGAAAAAGACTAGATTCTAAAGCTTAGTTGTTAGTTTCGTACATTAGGGGCCAAATTGAAT
261 ATTAAGAAAAAGACTAGATTCTAAAGCTTAGTTGTTAGTTTCGTACATTAGGGGCCAAATTGAAT
7430954 AAAATGGAAAAAAATTGAAAAAATTTTGGTAAAAATAGCAAGTAGGATGTCCCTAATGAATATTT
326 AAAATGGAAAAAAATTGAAAAAATTTTGGTAAAAATAGCAAGTAGGATGTCCCTAATGAATATTT
*
7431019 ATGAAATCAAATTTTAATCCGAAGTTTTAAATTGAAAGTTATTATTGTCCCGTATTTAAGGATTA
391 ATGAAATCAAATTTTAATCCGAAGTTTTAAATTGAAAGTTATTATTGTCCCGGATTTAAGGATTA
*
7431084 ATTTGAATAAATTGTAAAATATGCTTGATCTTGTAAATGATTTCGATTTTAATGGAATTTGATAG
456 ATTTGAATAAATTGTAAAATATGCTTGATCTTGTAAATGATTTCGATTTGAATGGAATTTGATAG
* * *
7431149 CATTATTTATTTGTGATTCTATTTAGCTAACATTGACATGAAACGGTTGAGAGGGAAAGGATGTT
521 CATTATTTATTTCTGATTCTATTTAGCTAACATTGACACGAAACAGTTGAGAGGGAAAGGATGTT
7431214 GGAACGCCGGCACCCTTACGGCGATCCTAACAATTATCAT
586 GGAACGCCGGCACCCTTACGGCGATCCTAACAATTATCAT
* * *
7431254 TATTGATCGTTCACCACTTTCGATACAAGCACTAACCCAAATTAAGATAAAATATTAGAAATAAC
1 TATTGATCATTCACCACTTTCCATACAAGCACTAACCCAAATTAAGATAAAATATTAAAAATAAC
7431319 CTTTTAGAAAAATTGACAATCATCATTAATGCCCAATTCATCCCCCAAATTTTACAATTCGGTAC
66 CTTTTAGAAAAATTGACAATCATCATTAATGCCCAATTCATCCCCCAAATTTTACAATTCGGTAC
* *
7431384 AAATAGGATGTCGTACGATCTAATTAAAACATATAAAATAACTAAGGGTCGTCGATTCAATATGG
131 AAATAGGATGTCGTAAGATCTAATTAAAACATATAAAATAACTAAGGGTCGTCAATTCAATATGG
* *
7431449 CCAAGTTTTGACCAAAATTTTGGGTGAGACAAAGTTGATATGAAATTGTTAGAAATTAAGCTTAG
196 CCAAGTTTTGACCAAAATTTTGGGTGAGACAAAATTGATATGAAATTATTAGAAATTAAGCTTAG
* *
7431514 ATTAAGAAAAAGACTTGATTCTAAAGCTTAGTTGTTAGTTTCGTATATTAGGGGCCAAATTGAAT
261 ATTAAGAAAAAGACTAGATTCTAAAGCTTAGTTGTTAGTTTCGTACATTAGGGGCCAAATTGAAT
*
7431579 AAAATGGAAAAAAATTGTAAAAATTTTGGTAAAAATAGCAAGTAGGATGTCCCTAATGAATATTT
326 AAAATGGAAAAAAATTGAAAAAATTTTGGTAAAAATAGCAAGTAGGATGTCCCTAATGAATATTT
** * *
7431644 ATGAAATCAAATTTTAATTTGAAGTTTTAAATTGAAAGTTATTATTGTCCCGGGTTTAGGGATTA
391 ATGAAATCAAATTTTAATCCGAAGTTTTAAATTGAAAGTTATTATTGTCCCGGATTTAAGGATTA
*
7431709 ATTTGAATAAATTGTAAAATATGTTTGATCTTGTAAATGATTTCGATTTGAATGGAATTTGATAG
456 ATTTGAATAAATTGTAAAATATGCTTGATCTTGTAAATGATTTCGATTTGAATGGAATTTGATAG
* *
7431774 CATTATTTATTTCTGATTCTGTTTAGCTAACATTGACACGGAACAGTTGAGAGGGAAAGGATGTT
521 CATTATTTATTTCTGATTCTATTTAGCTAACATTGACACGAAACAGTTGAGAGGGAAAGGATGTT
7431839 GGAACGCCGGCACCCTTAC
586 GGAACGCCGGCACCCTTAC
7431858 ACCGCAGCGG
Statistics
Matches: 580, Mismatches: 24, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
625 580 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (625 bp):
TATTGATCATTCACCACTTTCCATACAAGCACTAACCCAAATTAAGATAAAATATTAAAAATAAC
CTTTTAGAAAAATTGACAATCATCATTAATGCCCAATTCATCCCCCAAATTTTACAATTCGGTAC
AAATAGGATGTCGTAAGATCTAATTAAAACATATAAAATAACTAAGGGTCGTCAATTCAATATGG
CCAAGTTTTGACCAAAATTTTGGGTGAGACAAAATTGATATGAAATTATTAGAAATTAAGCTTAG
ATTAAGAAAAAGACTAGATTCTAAAGCTTAGTTGTTAGTTTCGTACATTAGGGGCCAAATTGAAT
AAAATGGAAAAAAATTGAAAAAATTTTGGTAAAAATAGCAAGTAGGATGTCCCTAATGAATATTT
ATGAAATCAAATTTTAATCCGAAGTTTTAAATTGAAAGTTATTATTGTCCCGGATTTAAGGATTA
ATTTGAATAAATTGTAAAATATGCTTGATCTTGTAAATGATTTCGATTTGAATGGAATTTGATAG
CATTATTTATTTCTGATTCTATTTAGCTAACATTGACACGAAACAGTTGAGAGGGAAAGGATGTT
GGAACGCCGGCACCCTTACGGCGATCCTAACAATTATCAT
Found at i:7457886 original size:20 final size:19
Alignment explanation
Indices: 7457861--7457898 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
7457851 TAAAATCTTA
7457861 ATTTTTTATATATTTTTTAG
1 ATTTTTTATA-ATTTTTTAG
7457881 ATTTTTTATAATTTTTTA
1 ATTTTTTATAATTTTTTA
7457899 AAAATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (19 bp):
ATTTTTTATAATTTTTTAG
Found at i:7457898 original size:10 final size:10
Alignment explanation
Indices: 7457859--7457898 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
7457849 TTTAAAATCT
7457859 TAATTTTTTA
1 TAATTTTTTA
7457869 TATATTTTTTA
1 TA-ATTTTTTA
*
7457880 -GATTTTTTA
1 TAATTTTTTA
7457889 TAATTTTTTA
1 TAATTTTTTA
7457899 AAAATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 8 0.31
10 10 0.38
11 8 0.31
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:7458121 original size:33 final size:30
Alignment explanation
Indices: 7458084--7458145 Score: 70
Period size: 33 Copynumber: 2.0 Consensus size: 30
7458074 TCGAACTCGA
* *
7458084 AACTCGACTCGAGTTGACTTGAATAATTCGAAT
1 AACTCAACTCGA-TTAACTTG-A-AATTCGAAT
*
7458117 AACTCAATTCGATTAACTTGAAATTCGAA
1 AACTCAACTCGATTAACTTGAAATTCGAA
7458146 ATTTTTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 8 0.31
31 1 0.04
32 7 0.27
33 10 0.38
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (30 bp):
AACTCAACTCGATTAACTTGAAATTCGAAT
Found at i:7461071 original size:11 final size:10
Alignment explanation
Indices: 7461057--7461127 Score: 67
Period size: 9 Copynumber: 7.3 Consensus size: 10
7461047 TAATTTTTTT
7461057 AAAATTATTGA
1 AAAATTATT-A
7461068 AAAATTATTA
1 AAAATTATTA
*
7461078 AATATTA-TA
1 AAAATTATTA
7461087 AAAATT-TTA
1 AAAATTATTA
* *
7461096 GAAATGATTA
1 AAAATTATTA
*
7461106 AAAATTAAT-
1 AAAATTATTA
*
7461115 AAAATTAATA
1 AAAATTATTA
7461125 AAA
1 AAA
7461128 TTTTATAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
9 22 0.44
10 19 0.38
11 9 0.18
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (10 bp):
AAAATTATTA
Found at i:7461084 original size:10 final size:9
Alignment explanation
Indices: 7461055--7461156 Score: 64
Period size: 9 Copynumber: 10.9 Consensus size: 9
7461045 CTTAATTTTT
7461055 TTAAAATTA
1 TTAAAATTA
7461064 TTGAAAAATTA
1 TT--AAAATTA
7461075 TTAAATATTA
1 TTAAA-ATTA
*
7461085 TAAAAATT-
1 TTAAAATTA
*
7461093 TTAGAAATGA
1 TTA-AAATTA
7461103 TTAAAAATTA
1 TT-AAAATTA
*
7461113 ATAAAATTA
1 TTAAAATTA
* *
7461122 ATAAAATTT
1 TTAAAATTA
*
7461131 TATAAAAATA
1 T-TAAAATTA
* *
7461141 -AAAAATTC
1 TTAAAATTA
7461149 TTAAAATT
1 TTAAAATT
7461157 TTATTTAAAA
Statistics
Matches: 72, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
8 7 0.10
9 33 0.46
10 22 0.31
11 10 0.14
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (9 bp):
TTAAAATTA
Found at i:7461089 original size:19 final size:18
Alignment explanation
Indices: 7461055--7461156 Score: 75
Period size: 19 Copynumber: 5.4 Consensus size: 18
7461045 CTTAATTTTT
7461055 TTAAAATTATTGAAAAATTA
1 TTAAAATTA-T-AAAAATTA
7461075 TTAAATATTATAAAAATT-
1 TTAAA-ATTATAAAAATTA
*
7461093 TTAGAAATGATTAAAAATTA
1 TTA-AAATTA-TAAAAATTA
* *
7461113 ATAAAATTA-ATAAAATTT
1 TTAAAATTATA-AAAATTA
* *
7461131 TATAAAAATA-AAAAATTC
1 T-TAAAATTATAAAAATTA
7461149 TTAAAATT
1 TTAAAATT
7461157 TTATTTAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.10
18 19 0.28
19 30 0.44
20 8 0.12
21 4 0.06
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (18 bp):
TTAAAATTATAAAAATTA
Found at i:7461109 original size:38 final size:37
Alignment explanation
Indices: 7461053--7461132 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 37
7461043 AGCTTAATTT
* *
7461053 TTTTAAAATTATTGAAAAATTATTAAATATT-ATAAAAA
1 TTTTAAAATGATTGAAAAATTAATAAA-ATTAAT-AAAA
7461091 TTTTAGAAATGATT-AAAAATTAATAAAATTAATAAAA
1 TTTTA-AAATGATTGAAAAATTAATAAAATTAATAAAA
7461128 TTTTA
1 TTTTA
7461133 TAAAAATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
37 12 0.32
38 19 0.50
39 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (37 bp):
TTTTAAAATGATTGAAAAATTAATAAAATTAATAAAA
Found at i:7463542 original size:20 final size:21
Alignment explanation
Indices: 7463517--7463558 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7463507 CTGGCGTCAT
7463517 ATTCGA-TTCCCCCAACAATG
1 ATTCGATTTCCCCCAACAATG
* *
7463537 ATTCGATTTCTCCGAACAATG
1 ATTCGATTTCCCCCAACAATG
7463558 A
1 A
7463559 ATGAGAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.29
Consensus pattern (21 bp):
ATTCGATTTCCCCCAACAATG
Found at i:7466233 original size:284 final size:285
Alignment explanation
Indices: 7465691--7466259 Score: 917
Period size: 284 Copynumber: 2.0 Consensus size: 285
7465681 AATCCAACTA
* * * *
7465691 AAAATGTTAAAAACTAGGAGAAAAAAATCTAATTTGTCATTCTTCTATTAGAAAGGGTAAGGAGG
1 AAAATGCTAAAAACTAGGAGAAAAAAAGCTAATTTGTCATTCTCCTATTAGAAAGGGTAAGGAGA
* *
7465756 ACGTAGAATCACAGTTTCATACAATCCCTTTTCATGGATTCATATAGAGATGTGATAAGATGTGA
66 ACGTAGAATCACAGTTTCATACAATCCCTTCTCATGAATTCATATAGAGATGTGATAAGATGTGA
*
7465821 TTTGAGTATGCTTTGTAGAGTCAACCACAAAGTAATGGGAGATTTATGGGATACGACACGAAAAA
131 TTTGAGTATGCTTTGTAGAGTCAACCACAAAGTAATGGGAGATTTATAGGATACGACACGAAAAA
* * *
7465886 TTTTTATGTGAACTTTGATGGGATTAGGTAGCGGCCTACCTGAGAAAGAAATGAAAGCATTTAGT
196 TTTTTAAGTGAAATTTGATGGGATTAGGTAGCGGCCTACCTGAGAAAGAAATGAAAACATTTAGT
7465951 TGGGTGAACATTTTTACAGGCAAAC
261 TGGGTGAACATTTTTACAGGCAAAC
* * * *
7465976 AAAATGCTAAAAATTAGGAG-AAAAAAGCTTATTTGTCATTCTCCTATT-GAAAAGGGTAGGGAT
1 AAAATGCTAAAAACTAGGAGAAAAAAAGCTAATTTGTCATTCTCCTATTAG-AAAGGGTAAGGAG
* ** * *
7466039 AATGTAGAATCATGGTTTCATACAATCCCTTCTCATGAATTCATATAGATATGTGATAAGATGTT
65 AACGTAGAATCACAGTTTCATACAATCCCTTCTCATGAATTCATATAGAGATGTGATAAGATGTG
*
7466104 ATTTGAGTATGCTTTGTAGAGTCAACCACAAAGTAATGGGAGATTTATAGGATGCGACACGAAAA
130 ATTTGAGTATGCTTTGTAGAGTCAACCACAAAGTAATGGGAGATTTATAGGATACGACACGAAAA
*
7466169 TTTTTTAAGTGAAATTTGATGGGATTAGGTAGCGGCCTACCTGAGAAAGAAATGAAAACATTTAG
195 ATTTTTAAGTGAAATTTGATGGGATTAGGTAGCGGCCTACCTGAGAAAGAAATGAAAACATTTAG
*
7466234 TTGGGTGAGCATTTTTACAGGCAAAC
260 TTGGGTGAACATTTTTACAGGCAAAC
7466260 TCCTCTTTGG
Statistics
Matches: 261, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
283 1 0.00
284 242 0.93
285 18 0.07
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (285 bp):
AAAATGCTAAAAACTAGGAGAAAAAAAGCTAATTTGTCATTCTCCTATTAGAAAGGGTAAGGAGA
ACGTAGAATCACAGTTTCATACAATCCCTTCTCATGAATTCATATAGAGATGTGATAAGATGTGA
TTTGAGTATGCTTTGTAGAGTCAACCACAAAGTAATGGGAGATTTATAGGATACGACACGAAAAA
TTTTTAAGTGAAATTTGATGGGATTAGGTAGCGGCCTACCTGAGAAAGAAATGAAAACATTTAGT
TGGGTGAACATTTTTACAGGCAAAC
Found at i:7472427 original size:16 final size:16
Alignment explanation
Indices: 7472405--7472442 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7472395 AACTTTACCA
7472405 TTTTATTTA-AATTTT
1 TTTTATTTATAATTTT
7472420 TATTTATTTATAATTTT
1 T-TTTATTTATAATTTT
7472437 TTTTAT
1 TTTTAT
7472443 AAATATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 13 0.62
17 7 0.33
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTATTTATAATTTT
Found at i:7472565 original size:2 final size:2
Alignment explanation
Indices: 7472558--7472584 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7472548 TTTTCAATTG
7472558 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7472585 AGTCTAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7478673 original size:25 final size:27
Alignment explanation
Indices: 7478645--7478697 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
7478635 TTTAGCTATA
*
7478645 TTATTTTAAATTT-TAATAT-AATTTT
1 TTATTATAAATTTATAATATCAATTTT
* *
7478670 TTATTATATATTTATTATATCAATTTT
1 TTATTATAAATTTATAATATCAATTTT
7478697 T
1 T
7478698 AAGTTGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 11 0.48
26 5 0.22
27 7 0.30
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (27 bp):
TTATTATAAATTTATAATATCAATTTT
Found at i:7482118 original size:9 final size:9
Alignment explanation
Indices: 7482101--7482132 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7482091 GTTTAGGGTA
7482101 TAATTTAAT
1 TAATTTAAT
*
7482110 TAGTTTAAT
1 TAATTTAAT
7482119 TAATTTAAT
1 TAATTTAAT
7482128 TAATT
1 TAATT
7482133 AAATGAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (9 bp):
TAATTTAAT
Found at i:7482462 original size:15 final size:15
Alignment explanation
Indices: 7482439--7482472 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7482429 GAATCGAAAA
7482439 TTTTCGATTTTAGAT
1 TTTTCGATTTTAGAT
*
7482454 TTTTGGATTTTAGAT
1 TTTTCGATTTTAGAT
7482469 TTTT
1 TTTT
7482473 TTGAGTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.03, G:0.15, T:0.65
Consensus pattern (15 bp):
TTTTCGATTTTAGAT
Found at i:7482511 original size:17 final size:17
Alignment explanation
Indices: 7482489--7482522 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7482479 TGGAAAAAGA
7482489 AATTTTAATTT-ACTTAT
1 AATTTT-ATTTCACTTAT
7482506 AATTTTATTTCACTTAT
1 AATTTTATTTCACTTAT
7482523 TTTTTTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTTATTTCACTTAT
Found at i:7482951 original size:36 final size:35
Alignment explanation
Indices: 7482888--7482957 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 35
7482878 CCTCTCTCTT
*
7482888 TTCCCTTTTCCATTCTCCTTCCTTTCTTTTCTTTCA
1 TTCCCTTTTCCATTCTACTTCCTTTCTTTT-TTTCA
* *
7482924 TTCCCTTTTTCATTCTTATTTCC-TTCTTTTTTTC
1 TTCCCTTTTCCATTC-TACTTCCTTTCTTTTTTTC
7482958 TTTTTGATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 4 0.13
36 21 0.70
37 5 0.17
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (35 bp):
TTCCCTTTTCCATTCTACTTCCTTTCTTTTTTTCA
Found at i:7488814 original size:16 final size:16
Alignment explanation
Indices: 7488793--7488834 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7488783 TTATTAAATT
*
7488793 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7488809 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7488824 AT-TATGTTTAA
1 ATATAT-TTTAA
7488835 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7488819 original size:15 final size:15
Alignment explanation
Indices: 7488784--7488825 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7488774 TTAAGAATTT
*
7488784 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7488798 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7488812 TATTTAATAATAAT
1 TATTTAATTATAAT
7488826 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7488965 original size:18 final size:17
Alignment explanation
Indices: 7488937--7488971 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7488927 ATTATTAAGA
*
7488937 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7488954 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7488972 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7489054 original size:157 final size:157
Alignment explanation
Indices: 7488768--7489084 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
7488758 ATAAGAATAT
* *
7488768 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
*
7488833 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
7488898 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
7488925 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
7488990 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
7489055 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
7489082 TAA
1 TAA
7489085 GGGTATTCTA
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:7489232 original size:16 final size:16
Alignment explanation
Indices: 7489207--7489242 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7489197 GATTTGCTAT
*
7489207 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
7489223 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7489239 TACA
1 TACA
7489243 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7491021 original size:21 final size:20
Alignment explanation
Indices: 7490995--7491036 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
7490985 TGATTCTCAT
7490995 TCATTGTTCGGAGAAATCAAA
1 TCATTGTTCGGAGAAA-CAAA
* *
7491016 TCATTGTTGGGGGAAACAAA
1 TCATTGTTCGGAGAAACAAA
7491036 T
1 T
7491037 ATGACACCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (20 bp):
TCATTGTTCGGAGAAACAAA
Found at i:7494041 original size:37 final size:36
Alignment explanation
Indices: 7493956--7494046 Score: 112
Period size: 37 Copynumber: 2.5 Consensus size: 36
7493946 ACACAAGTAG
*
7493956 TCCAACCGA-AACACACCAAACGCTCATAAGAGCTAA
1 TCCAA-CGATAACACGCCAAACGCTCATAAGAGCTAA
* * *
7493992 TCCAAACAATAACACGCCAAGCGCTCATGAGAGCTAA
1 TCC-AACGATAACACGCCAAACGCTCATAAGAGCTAA
7494029 TCCAACTGATAACACGCC
1 TCCAAC-GATAACACGCC
7494047 TCAGTAATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
36 8 0.17
37 39 0.83
ACGTcount: A:0.41, C:0.33, G:0.13, T:0.13
Consensus pattern (36 bp):
TCCAACGATAACACGCCAAACGCTCATAAGAGCTAA
Found at i:7499035 original size:35 final size:35
Alignment explanation
Indices: 7498989--7499061 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
7498979 ATTTATTAAG
7498989 TTAAGTTTTGTTATTTTTAAAATGTGTCAAACATA
1 TTAAGTTTTGTTATTTTTAAAATGTGTCAAACATA
7499024 TTAAGTTTTGTTATTTTTAAAATGTGTCAAACATA
1 TTAAGTTTTGTTATTTTTAAAATGTGTCAAACATA
7499059 TTA
1 TTA
7499062 TCACATGTGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.49
Consensus pattern (35 bp):
TTAAGTTTTGTTATTTTTAAAATGTGTCAAACATA
Found at i:7499692 original size:23 final size:24
Alignment explanation
Indices: 7499666--7499723 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
7499656 TTATTTTTAA
*
7499666 AATTTATTG-TTAAATTTTATTTT
1 AATTTATTGTTTAAATTGTATTTT
*
7499689 AATTAATTGTTTTAAATTGTATTTT
1 AATTTATTG-TTTAAATTGTATTTT
7499714 ATTATTTATT
1 A--ATTTATT
7499724 AATTGTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 8 0.29
25 14 0.50
27 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (24 bp):
AATTTATTGTTTAAATTGTATTTT
Found at i:7501572 original size:9 final size:10
Alignment explanation
Indices: 7501548--7501578 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7501538 TTTAAAATGT
7501548 ATTTTTTATA
1 ATTTTTTATA
7501558 ATTTTTTATA
1 ATTTTTTATA
*
7501568 ATTTTTAATA
1 ATTTTTTATA
7501578 A
1 A
7501579 GAGCAAGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:7502874 original size:17 final size:17
Alignment explanation
Indices: 7502852--7502912 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
7502842 CTTATAGTTT
7502852 TAATTGTATACAGCTTC
1 TAATTGTATACAGCTTC
* *
7502869 TAATTGTGT-CTTAGAGTTC
1 TAATTGTATAC--AG-CTTC
*
7502888 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTC
7502905 TAATTGTA
1 TAATTGTA
7502913 GCCCTTGATG
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.03
17 18 0.51
18 4 0.11
19 11 0.31
20 1 0.03
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (17 bp):
TAATTGTATACAGCTTC
Found at i:7502892 original size:36 final size:36
Alignment explanation
Indices: 7502841--7502911 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
7502831 GATTATGTAA
* *
7502841 TCTTATAGTTTTAATTGTATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
*
7502877 TCTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGT
7502912 AGCCCTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.49
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:7506163 original size:25 final size:25
Alignment explanation
Indices: 7506135--7506186 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
7506125 TCGCCGCTAA
7506135 TGCTCGACCTTTAGCGGCGCTTTTT
1 TGCTCGACCTTTAGCGGCGCTTTTT
* ** * *
7506160 TGCTTGATTTTTAGTGGCGTTTTTT
1 TGCTCGACCTTTAGCGGCGCTTTTT
7506185 TG
1 TG
7506187 TCCAAACGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.08, C:0.17, G:0.25, T:0.50
Consensus pattern (25 bp):
TGCTCGACCTTTAGCGGCGCTTTTT
Done.