Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 31 of 172
Found at i:7509102 original size:126 final size:126
Alignment explanation
Indices: 7508877--7509105 Score: 406
Period size: 126 Copynumber: 1.8 Consensus size: 126
7508867 ATTATTTCGA
* *
7508877 GTTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGGGAAGAAATTGT
1 GTTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAAGATGCAATTTGAGAAGAAATTGT
*
7508942 GAAATCGCGCCCTCGTGGACTCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
*
7509003 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTG
1 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAAGATGCAATTTGAGAAGAAATTG
7509067 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
7509106 CAAGTTTGGG
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
126 97 0.99
127 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (126 bp):
GTTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAAGATGCAATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
Found at i:7522450 original size:21 final size:21
Alignment explanation
Indices: 7522424--7522464 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7522414 AGACGAGCAA
* *
7522424 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7522445 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7522465 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7528080 original size:125 final size:125
Alignment explanation
Indices: 7527837--7528153 Score: 431
Period size: 125 Copynumber: 2.5 Consensus size: 125
7527827 GATAAAATCA
* * * * * *
7527837 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAGTCATGCCCACATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCGCTTTTGCTACAAT
* * *
7527902 AGGTCCTGCAAAAATAATTTCAAGTTGACGTTTCTGAGTAAATAGTATAAAAAACGC-TC
66 AGGTCCTGAAAAAATAATTTCAAGTTGACGTTTCTGAGGAAATAATATAAAAAACGCTTC
* * * * *
7527961 TAAGCAGAATGCTTTATGAAAAGAATTTGTGAAATCGTGCCCTCGTGGACGCACTTTTGCTACAA
1 -AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCGCTTTTGCTACAA
* **
7528026 TAGGTCTTGGAAAAAATAATTTTGAGTTGACGTTTCTGAGGAAATAATAT-AAAAACGCTTC
65 TAGGTCCT-GAAAAAATAATTTCAAGTTGACGTTTCTGAGGAAATAATATAAAAAACGCTTC
* *
7528087 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACTAT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCGCTTTTGCTACAAT
7528152 AG
66 AG
7528154 CATGTCTGGG
Statistics
Matches: 166, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
125 128 0.77
126 38 0.23
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCGCTTTTGCTACAAT
AGGTCCTGAAAAAATAATTTCAAGTTGACGTTTCTGAGGAAATAATATAAAAAACGCTTC
Found at i:7531830 original size:124 final size:124
Alignment explanation
Indices: 7531618--7531851 Score: 326
Period size: 124 Copynumber: 1.9 Consensus size: 124
7531608 CAGAAATAGC
* * * *
7531618 AGGGGTCTAAAGAATAGTCGATGTTTAGAATACTTCGGATTTTCCAAATCAAAATTTCTCTGCAA
1 AGGGGTCCAAAGAATAGTCGATGTTTACAATACTTCGGATTTTCCAAATCAAAATTTATCCGCAA
* *
7531683 GAAAAGAGCATACACACTGTAAATCATACCTCAAGACAGTTGGTTTTGCTTGAAATATT
66 GAAAAGAGCATACACACTATAAATCATACCTCAAGAAAGTTGGTTTTGCTTGAAATATT
* * * * * **
7531742 AGGGGTCCAAAGAATGGTCGGTGTTTACAATGCTAT-TGATTTTCCAGATTGAAATTTATCCGCA
1 AGGGGTCCAAAGAATAGTCGATGTTTACAATACT-TCGGATTTTCCAAATCAAAATTTATCCGCA
*
7531806 AGAAAAGAGCATACACACTATAAATCGTACCTCAAGAAAGTTGGTT
65 AGAAAAGAGCATACACACTATAAATCATACCTCAAGAAAGTTGGTT
7531852 CTGCAGAAAG
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
124 94 0.99
125 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (124 bp):
AGGGGTCCAAAGAATAGTCGATGTTTACAATACTTCGGATTTTCCAAATCAAAATTTATCCGCAA
GAAAAGAGCATACACACTATAAATCATACCTCAAGAAAGTTGGTTTTGCTTGAAATATT
Found at i:7537904 original size:21 final size:22
Alignment explanation
Indices: 7537854--7537916 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
7537844 TACGTGATTT
*
7537854 TATACATTTT-TAATTTATTAAA
1 TATATATTTTGTAA-TTATTAAA
7537876 TAATATATTTTGTAATT-TTAAA
1 T-ATATATTTTGTAATTATTAAA
7537898 TATATATTTGTGCTAATTA
1 TATATATTT-TG-TAATTA
7537917 AATGACGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
21 8 0.23
22 9 0.26
23 15 0.43
24 3 0.09
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (22 bp):
TATATATTTTGTAATTATTAAA
Found at i:7537914 original size:23 final size:22
Alignment explanation
Indices: 7537871--7537915 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
7537861 TTTTAATTTA
7537871 TTAAATAATATATTTTGTAATT
1 TTAAATAATATATTTTGTAATT
7537893 TTAAAT-ATATATTTGTGCTAATT
1 TTAAATAATATATTT-TG-TAATT
7537916 AAATGACGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 8 0.38
23 5 0.24
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (22 bp):
TTAAATAATATATTTTGTAATT
Found at i:7547247 original size:5 final size:5
Alignment explanation
Indices: 7547232--7547270 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
7547222 AGGATTTTTG
*
7547232 TTAATT TTAAT TTAAT TTAAT TTAAT TTATTT TTAAT TT
1 TTAA-T TTAAT TTAAT TTAAT TTAAT TTA-AT TTAAT TT
7547271 TTATCTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
5 22 0.73
6 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (5 bp):
TTAAT
Found at i:7552668 original size:17 final size:17
Alignment explanation
Indices: 7552648--7552684 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7552638 AACATCAACA
7552648 AATATCATTCCATTTCC
1 AATATCATTCCATTTCC
**
7552665 AATATGTTTCCATTTCC
1 AATATCATTCCATTTCC
7552682 AAT
1 AAT
7552685 CAATTGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.43
Consensus pattern (17 bp):
AATATCATTCCATTTCC
Found at i:7564457 original size:21 final size:22
Alignment explanation
Indices: 7564431--7564475 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
7564421 ATTAGTCAGC
* *
7564431 AAGAAATGAATAA-AAATGAGG
1 AAGAAATGAAGAAGAAAAGAGG
7564452 AAGAAATGAAGAAGAAAAGAGG
1 AAGAAATGAAGAAGAAAAGAGG
7564474 AA
1 AA
7564476 ATTTCAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (22 bp):
AAGAAATGAAGAAGAAAAGAGG
Found at i:7564460 original size:11 final size:11
Alignment explanation
Indices: 7564431--7564468 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7564421 ATTAGTCAGC
*
7564431 AAGAAATGAAT
1 AAGAAATGAAG
*
7564442 AA-AAATGAGG
1 AAGAAATGAAG
7564452 AAGAAATGAAG
1 AAGAAATGAAG
7564463 AAGAAA
1 AAGAAA
7564469 AGAGGAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.11
Consensus pattern (11 bp):
AAGAAATGAAG
Found at i:7566964 original size:154 final size:154
Alignment explanation
Indices: 7566765--7567413 Score: 879
Period size: 154 Copynumber: 4.3 Consensus size: 154
7566755 TTTTTTACTG
* * * * *
7566765 AAAGTAATAAAAT--TCGGAAAAAAAAACGAACAAATGGCTGAAATAAGGGTTTTTTTAAAAATT
1 AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTT-TAAATT
* *
7566828 TATTTAAAAAACACACTAAATGAATAAATTTCAAACATAATGTAATAAAATAATGTAAAATAATA
65 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
7566893 AAATTAGAAAATAGTATATTTTTT-
130 AAATTAGAAAATAATATATTTTTTA
7566917 AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGGTTTTTTTTAAATT
1 AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATAA-GGGTTTTTTTTAAATT
* * *
7566982 TATTTAAAAAATACAATAAATTAATACATTTCAAACATAATGTACTAAAATAATG--------TA
65 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
7567039 AAATTAGAAAATAATATATTTTTTA
130 AAATTAGAAAATAATATATTTTTTA
* * * * * *
7567064 AAAGTAACAAAATCCAGGGAAAACAATAGGAACAAAGGGCCAAAATAAGAGTTTTTATTTAAATT
1 AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTT-TTTAAATT
* * *
7567129 TATTTAAAAAACACAGTAAATTAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATA
65 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
7567194 AAA-TACGAAAATAATATATTTTTATTG
130 AAATTA-GAAAATAATATA-TTTT-TTA
* *
7567221 AAAGTAATAAAAT-CTGGGAAAAAAATACGAACAAAGGGCCAAAATAA-GTTTTTTTTTAAATTT
1 AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTT
7567284 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
66 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
7567349 AATTAGAAAATAATAT-TTTTTT-
131 AATTAGAAAATAATATATTTTTTA
* *
7567371 AAAGTAATAAAATCC---GAAAAAAA-ACGATCAAAGGGCTGAAATA
1 AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATA
7567414 CGAACATGTT
Statistics
Matches: 446, Mismatches: 33, Indels: 41
0.86 0.06 0.08
Matches are distributed among these distances:
146 32 0.07
147 120 0.27
148 8 0.02
150 13 0.03
151 3 0.01
152 17 0.04
154 170 0.38
155 34 0.08
156 35 0.08
157 14 0.03
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (154 bp):
AAAGTAATAAAATCCTGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTT
ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
AATTAGAAAATAATATATTTTTTA
Found at i:7567134 original size:147 final size:145
Alignment explanation
Indices: 7566883--7567406 Score: 661
Period size: 147 Copynumber: 3.5 Consensus size: 145
7566873 TAAAATAATG
*
7566883 TAAAATAA--TAAAATTAGAAAATAGTATATTTTTTAAAGTAATAAAATCCTGGGAAAAAAATAC
1 TAAAATAATGTAAAATTAGAAAATAATATATTTTTTAAAGTAATAAAATCCTGGGAAAAAAATAC
* * *
7566946 GAACAAAGGGCCGAAATAAGGGGTTTTTTTTAAATTTATTTAAAAAATACAATAAATTAATACAT
66 GAACAAAGGGCCAAAATAA-GAGTTTTTTTTAAATTTATTTAAAAAACACAATAAATTAATACAT
7567011 TTCAAACATAATGTAC
130 TTCAAACATAATGTAC
* * *
7567027 TAAAATAATGTAAAATTAGAAAATAATATATTTTTTAAAAGTAACAAAATCCAGGGAAAACAATA
1 TAAAATAATGTAAAATTAGAAAATAATATATTTTTT-AAAGTAATAAAATCCTGGGAAAAAAATA
* *
7567092 GGAACAAAGGGCCAAAATAAGAGTTTTTATTTAAATTTATTTAAAAAACACAGTAAATTAATACA
65 CGAACAAAGGGCCAAAATAAGAGTTTTT-TTTAAATTTATTTAAAAAACACAATAAATTAATACA
*
7567157 TTTCAAAAATAATGTAC
129 TTTCAAACATAATGTAC
7567174 TAAAATAATGTAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAAT-CTGG
1 TAAAATAATGT--AA-AAT----TA-GAAAATAATATA-TTTT-TT-AAAGTAATAAAATCCTGG
* *
7567238 GAAAAAAATACGAACAAAGGGCCAAAATAAG-TTTTTTTTTAAATTTATTTAAAAAACACACTAA
55 GAAAAAAATACGAACAAAGGGCCAAAATAAGAGTTTTTTTTAAATTTATTTAAAAAACACAATAA
*
7567302 ATGAATACATTTCAAACATAATGTAC
120 ATTAATACATTTCAAACATAATGTAC
7567328 TAAAATAATGTAAAATAATAAAATTAGAAAATAATAT-TTTTTTAAAGTAATAAAATCC---GAA
1 TAAAATAATG--------TAAAATTAGAAAATAATATATTTTTTAAAGTAATAAAATCCTGGGAA
*
7567389 AAAAA-ACGATCAAAGGGC
58 AAAAATACGAACAAAGGGC
7567407 TGAAATACGA
Statistics
Matches: 337, Mismatches: 20, Indels: 43
0.84 0.05 0.11
Matches are distributed among these distances:
144 8 0.02
146 32 0.09
147 116 0.34
148 8 0.02
149 2 0.01
150 16 0.05
151 3 0.01
152 4 0.01
154 73 0.22
155 19 0.06
156 36 0.11
157 14 0.04
159 3 0.01
160 2 0.01
162 1 0.00
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (145 bp):
TAAAATAATGTAAAATTAGAAAATAATATATTTTTTAAAGTAATAAAATCCTGGGAAAAAAATAC
GAACAAAGGGCCAAAATAAGAGTTTTTTTTAAATTTATTTAAAAAACACAATAAATTAATACATT
TCAAACATAATGTAC
Found at i:7577308 original size:23 final size:21
Alignment explanation
Indices: 7577269--7577310 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
7577259 AAATTTTAAC
*
7577269 TTTTTTATGAATAAGTATATA
1 TTTTTTATAAATAAGTATATA
7577290 TTTTTTATAATATATAGTATA
1 TTTTTTATAA-ATA-AGTATA
7577311 GACACATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 3 0.17
23 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTTTATAAATAAGTATATA
Found at i:7580599 original size:36 final size:36
Alignment explanation
Indices: 7580554--7580632 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
7580544 GGCCACATGG
*
7580554 AGAAAGTATGCACGAACAAAGGATGAACCCCTCAAC
1 AGAATGTATGCACGAACAAAGGATGAACCCCTCAAC
7580590 AGAATGTATGCACGAACAAAGGATGAACCCCTCAAC
1 AGAATGTATGCACGAACAAAGGATGAACCCCTCAAC
7580626 AGAATGT
1 AGAATGT
7580633 GCAAGCTCAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.43, C:0.23, G:0.20, T:0.14
Consensus pattern (36 bp):
AGAATGTATGCACGAACAAAGGATGAACCCCTCAAC
Found at i:7586286 original size:23 final size:23
Alignment explanation
Indices: 7586237--7586288 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
7586227 TTCACACTAA
* **
7586237 AATTTGGATAGCATATATATAGT
1 AATTTGGATAGCATATATACAAC
*
7586260 AATTTGGGTAGCATATATACAAC
1 AATTTGGATAGCATATATACAAC
7586283 AATTTG
1 AATTTG
7586289 AGCAGCATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (23 bp):
AATTTGGATAGCATATATACAAC
Found at i:7586295 original size:23 final size:23
Alignment explanation
Indices: 7586246--7586296 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7586236 AAATTTGGAT
* ** * *
7586246 AGCATATATATAGTAATTTGGGT
1 AGCATATATACAACAATTTGAGC
7586269 AGCATATATACAACAATTTGAGC
1 AGCATATATACAACAATTTGAGC
7586292 AGCAT
1 AGCAT
7586297 TTTTTTTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (23 bp):
AGCATATATACAACAATTTGAGC
Found at i:7586344 original size:47 final size:45
Alignment explanation
Indices: 7586308--7586611 Score: 383
Period size: 47 Copynumber: 6.6 Consensus size: 45
7586298 TTTTTTCACG
* *
7586308 AAAATTGGACAGCATATAAACAAAATTGGGCTGCATTTATACATC
1 AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATC
* *
7586353 AAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATC
1 AAAATTTGACAGCATATA-A-ACAAAATTGGACTGCATTTATACATC
*
7586400 AAAATTTGACAGCATATATACAAAATTGGACTGCATTTATACATC
1 AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATC
** * * *
7586445 AAAATTTGATGGCATATACATATATAAGTGGACTGCATTTATACATC
1 AAAATTTGACAGCATATA-A-ACAAAATTGGACTGCATTTATACATC
* * *
7586492 AAAATTTGACAGCATATACATATATAGTTGGACTGCATTTATACATC
1 AAAATTTGACAGCATATA-A-ACAAAATTGGACTGCATTTATACATC
* * *
7586539 AAAATTTGACAGCATATATATAAAATTGAACTGCATTTATACATC
1 AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATC
* **
7586584 AAAATTTGATAGCATATGTACAAAATTG
1 AAAATTTGACAGCATATAAACAAAATTG
7586612 AACAACACAT
Statistics
Matches: 231, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 105 0.45
46 1 0.00
47 125 0.54
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (45 bp):
AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATC
Found at i:7586413 original size:92 final size:92
Alignment explanation
Indices: 7586308--7586611 Score: 450
Period size: 92 Copynumber: 3.3 Consensus size: 92
7586298 TTTTTTCACG
* *
7586308 AAAATTGGACAGCATATAAACAAAATTGGGCTGCATTTATACATCAAAATTTGACAGCATATACA
1 AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
7586373 TATATAATTGGACTGCATTTATACATC
66 TATATAATTGGACTGCATTTATACATC
* **
7586400 AAAATTTGACAGCATATATACAAAATTGGACTGCATTTATACATCAAAATTTGATGGCATATACA
1 AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
*
7586465 TATATAAGTGGACTGCATTTATACATC
66 TATATAATTGGACTGCATTTATACATC
* * *
7586492 AAAATTTGACAGCATATACATATATAGTTGGACTGCATTTATACATCAAAATTTGACAGCATAT-
1 AAAATTTGACAGCATATA-A-ACAAAATTGGACTGCATTTATACATCAAAATTTGACAGCATATA
* *
7586556 -ATATAAAATTGAACTGCATTTATACATC
64 CATATATAATTGGACTGCATTTATACATC
* **
7586584 AAAATTTGATAGCATATGTACAAAATTG
1 AAAATTTGACAGCATATAAACAAAATTG
7586612 AACAACACAT
Statistics
Matches: 189, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
90 6 0.03
92 145 0.77
94 38 0.20
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (92 bp):
AAAATTTGACAGCATATAAACAAAATTGGACTGCATTTATACATCAAAATTTGACAGCATATACA
TATATAATTGGACTGCATTTATACATC
Found at i:7586481 original size:139 final size:139
Alignment explanation
Indices: 7586338--7586600 Score: 490
Period size: 139 Copynumber: 1.9 Consensus size: 139
7586328 CAAAATTGGG
7586338 CTGCATTTATACATCAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAA
1 CTGCATTTATACATCAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAA
* *
7586403 ATTTGACAGCATATATACAAAATTGGACTGCATTTATACATCAAAATTTGATGGCATATACATAT
66 ATTTGACAGCATATATACAAAATTGAACTGCATTTATACATCAAAATTTGATAGCATATACATAT
7586468 ATAAGTGGA
131 ATAAGTGGA
*
7586477 CTGCATTTATACATCAAAATTTGACAGCATATACATATATAGTTGGACTGCATTTATACATCAAA
1 CTGCATTTATACATCAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAA
*
7586542 ATTTGACAGCATATATATAAAATTGAACTGCATTTATACATCAAAATTTGATAGCATAT
66 ATTTGACAGCATATATACAAAATTGAACTGCATTTATACATCAAAATTTGATAGCATAT
7586601 GTACAAAATT
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 120 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (139 bp):
CTGCATTTATACATCAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAA
ATTTGACAGCATATATACAAAATTGAACTGCATTTATACATCAAAATTTGATAGCATATACATAT
ATAAGTGGA
Found at i:7586605 original size:24 final size:22
Alignment explanation
Indices: 7586347--7586605 Score: 63
Period size: 24 Copynumber: 11.2 Consensus size: 22
7586337 GCTGCATTTA
7586347 TACATCAAAATTTGACAGCATA-
1 TACATCAAAATTTGA-AGCATAT
* * *
7586369 TACAT-ATATAATTGGACTGCATTT
1 TACATCA-A-AATTTGA-AGCATAT
7586393 ATACATCAAAATTTGACAGCATA-
1 -TACATCAAAATTTGA-AGCATAT
* * * *
7586416 TATA-CAAAATTGGACTGCATTT
1 TACATCAAAATTTGA-AGCATAT
*
7586438 ATACATCAAAATTTGATGGCATA-
1 -TACATCAAAATTTGA-AGCATAT
* * * *
7586461 TACAT-ATATAAGTGGACTGCATTT
1 TACATCA-A-AATTTGA-AGCATAT
7586485 ATACATCAAAATTTGACAGCATA-
1 -TACATCAAAATTTGA-AGCATAT
* * * *
7586508 TACAT-ATATAGTTGGACTGCATTT
1 TACATCA-A-AATTTGA-AGCATAT
7586532 ATACATCAAAATTTGACAGCATA-
1 -TACATCAAAATTTGA-AGCATAT
* *
7586555 TATAT-AAAA-TTGAACTGCATTT
1 TACATCAAAATTTGAA--GCATAT
7586577 ATACATCAAAATTTGATAGCATAT
1 -TACATCAAAATTTGA-AGCATAT
7586601 GTACA
1 -TACA
7586606 AAATTGAACA
Statistics
Matches: 175, Mismatches: 37, Indels: 48
0.67 0.14 0.18
Matches are distributed among these distances:
19 1 0.01
20 4 0.02
21 25 0.14
22 25 0.14
23 37 0.21
24 57 0.33
25 22 0.13
26 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (22 bp):
TACATCAAAATTTGAAGCATAT
Found at i:7586990 original size:14 final size:15
Alignment explanation
Indices: 7586966--7587000 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
7586956 TATATACATT
7586966 ACCATATAAATACTA
1 ACCATATAAATACTA
7586981 ACCATA-AAATACTA
1 ACCATATAAATACTA
7586995 ATCCAT
1 A-CCAT
7587001 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:7587737 original size:43 final size:43
Alignment explanation
Indices: 7587624--7587752 Score: 140
Period size: 43 Copynumber: 3.0 Consensus size: 43
7587614 GACACGTACA
* *
7587624 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
* * *
7587667 ATGTC-ACTGTCCTAGACAG-GGTTTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACATA-TCG
*
7587710 ATGCCAACGTCCCAGACGTTGTCTTACACG-ATAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTA-AACACATATCG
7587753 GAAATCCTAT
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
42 5 0.07
43 61 0.87
44 4 0.06
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
Found at i:7588903 original size:15 final size:16
Alignment explanation
Indices: 7588885--7588918 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7588875 TTAAAACACG
7588885 AAAATTC-CACACAAT
1 AAAATTCTCACACAAT
*
7588900 AAAATTCTCACATAAT
1 AAAATTCTCACACAAT
7588916 AAA
1 AAA
7588919 CACACAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATTCTCACACAAT
Found at i:7590552 original size:30 final size:29
Alignment explanation
Indices: 7590518--7590590 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 29
7590508 CCTTGAGTCT
* *
7590518 AACTTTGACAAAATTACAATTTTTCCCCTA
1 AACTTTCACAAAATTACAATTTTGCCCC-A
* * *
7590548 AACTTTTACATAATTACACTTTTGCCCCA
1 AACTTTCACAAAATTACAATTTTGCCCCA
7590577 AA-TTTCA-AAAATTA
1 AACTTTCACAAAATTA
7590591 AACTTCATCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 6 0.16
28 4 0.11
29 3 0.08
30 24 0.65
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (29 bp):
AACTTTCACAAAATTACAATTTTGCCCCA
Found at i:7596684 original size:30 final size:31
Alignment explanation
Indices: 7596627--7596684 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
7596617 AGGTGAGTCG
*
7596627 GGAAGGGAATAAAAGTTTTAGGGGAAAAGTA
1 GGAAGGGAATAAAAATTTTAGGGGAAAAGTA
*
7596658 GGAA-GGAGTAAAAATTTT-GGGAGAAAA
1 GGAAGGGAATAAAAATTTTAGGG-GAAAA
7596685 TAAAAGGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 3 0.12
30 17 0.71
31 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.34, T:0.19
Consensus pattern (31 bp):
GGAAGGGAATAAAAATTTTAGGGGAAAAGTA
Found at i:7598516 original size:3 final size:3
Alignment explanation
Indices: 7598508--7598552 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
7598498 TAGTTCACCC
* *
7598508 TAA TAA TAA TAA TAA TAA TAC TAA TAA TAC TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7598553 GGGAAATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7604651 original size:25 final size:25
Alignment explanation
Indices: 7604617--7604681 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
7604607 CTATACATGT
*
7604617 ATGCTCACACGAGCTTTGAATCAGA
1 ATGCTCACACGAGCTGTGAATCAGA
7604642 ATGCTCACACGAGCTGTGAATCAGA
1 ATGCTCACACGAGCTGTGAATCAGA
*
7604667 ATGCTCACACAAGCT
1 ATGCTCACACGAGCT
7604682 ATAAAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATCAGA
Found at i:7609575 original size:27 final size:27
Alignment explanation
Indices: 7609545--7609602 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
7609535 ACTTACCAGC
*
7609545 GAACCACAGCTTGCCAAACCTGCTAAT
1 GAACCACAGCTTGCCAAACCTGATAAT
* *
7609572 GAACCCCAGCTTGCCAAACTTGATAAT
1 GAACCACAGCTTGCCAAACCTGATAAT
7609599 GAAC
1 GAAC
7609603 ACTAGCTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (27 bp):
GAACCACAGCTTGCCAAACCTGATAAT
Found at i:7609609 original size:27 final size:27
Alignment explanation
Indices: 7609551--7609609 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
7609541 CAGCGAACCA
* *
7609551 CAGCTTGCCAAACCTGCTAATGAACCC
1 CAGCTTGCCAAACCTGATAATGAACAC
*
7609578 CAGCTTGCCAAACTTGATAATGAACAC
1 CAGCTTGCCAAACCTGATAATGAACAC
*
7609605 TAGCT
1 CAGCT
7609610 CATTGAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (27 bp):
CAGCTTGCCAAACCTGATAATGAACAC
Found at i:7612837 original size:13 final size:13
Alignment explanation
Indices: 7612819--7612844 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7612809 CTCAAGCACC
7612819 ATTTATTTATTTT
1 ATTTATTTATTTT
7612832 ATTTATTTATTTT
1 ATTTATTTATTTT
7612845 TTTTGGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTATTTATTTT
Found at i:7618381 original size:18 final size:18
Alignment explanation
Indices: 7618321--7618377 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
7618311 TAAGCGATTT
* * *
7618321 ACATAGAATAAACAATTC
1 ACATAAAATAAGCAGTTC
7618339 ACATAAAATAAGCAGTTC
1 ACATAAAATAAGCAGTTC
*
7618357 A-AGTAAAAT-ATCAGTTC
1 ACA-TAAAATAAGCAGTTC
7618374 ACAT
1 ACAT
7618378 TAAACAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
17 10 0.30
18 23 0.70
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.25
Consensus pattern (18 bp):
ACATAAAATAAGCAGTTC
Found at i:7619241 original size:34 final size:34
Alignment explanation
Indices: 7619201--7619273 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 34
7619191 TATATAGTAG
* *
7619201 GGGTTCACACATATGGAA-G-GTTCGCGCATATGGA
1 GGGTTCACACATAT--AACGAGTTCACACATATGGA
*
7619235 GGGTTCACATATATAACGAGTTCACACATATGGA
1 GGGTTCACACATATAACGAGTTCACACATATGGA
7619269 GGGTT
1 GGGTT
7619274 TGCACAAATG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 2 0.06
33 1 0.03
34 31 0.91
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (34 bp):
GGGTTCACACATATAACGAGTTCACACATATGGA
Found at i:7619248 original size:17 final size:17
Alignment explanation
Indices: 7619201--7619273 Score: 76
Period size: 17 Copynumber: 4.3 Consensus size: 17
7619191 TATATAGTAG
7619201 GGGTTCACACATATGGA
1 GGGTTCACACATATGGA
* * *
7619218 AGGTTCGCGCATATGGA
1 GGGTTCACACATATGGA
* *
7619235 GGGTTCACATATAT-AA
1 GGGTTCACACATATGGA
*
7619251 CGAGTTCACACATATGGA
1 -GGGTTCACACATATGGA
7619269 GGGTT
1 GGGTT
7619274 TGCACAAATG
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
16 1 0.02
17 40 0.95
18 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (17 bp):
GGGTTCACACATATGGA
Found at i:7620843 original size:25 final size:25
Alignment explanation
Indices: 7620810--7620866 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
7620800 GAGCTAATAA
* *
7620810 CGGGTAGCTTCGAAGAGCCAT-TAAT
1 CGGGAAGCTCCGAAGAGCCATAT-AT
* *
7620835 CGGGAAGCTCCGGATAGCCATATAT
1 CGGGAAGCTCCGAAGAGCCATATAT
7620860 CGGGAAG
1 CGGGAAG
7620867 TTCAAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.32, T:0.19
Consensus pattern (25 bp):
CGGGAAGCTCCGAAGAGCCATATAT
Found at i:7635002 original size:13 final size:13
Alignment explanation
Indices: 7634984--7635014 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7634974 ATTATATTAA
7634984 AAATTAAAATATC
1 AAATTAAAATATC
7634997 AAATTAAAATATC
1 AAATTAAAATATC
7635010 AAATT
1 AAATT
7635015 TGTGCCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATTAAAATATC
Found at i:7639251 original size:55 final size:55
Alignment explanation
Indices: 7639167--7639277 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
7639157 CATGATATGA
7639167 TACAAAGCAAACCAATTTAATAGATTTGTTTGGTATATTATAAATAAGTGTAGAT
1 TACAAAGCAAACCAATTTAATAGATTTGTTTGGTATATTATAAATAAGTGTAGAT
7639222 TACAAAGCAAACCAATTTAATAGATTTGTTTGGTATATTATAAATAAGTGTAGAT
1 TACAAAGCAAACCAATTTAATAGATTTGTTTGGTATATTATAAATAAGTGTAGAT
7639277 T
1 T
7639278 TAAGATGTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.37
Consensus pattern (55 bp):
TACAAAGCAAACCAATTTAATAGATTTGTTTGGTATATTATAAATAAGTGTAGAT
Found at i:7644352 original size:6 final size:6
Alignment explanation
Indices: 7644341--7644370 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7644331 AGAGGATCGC
7644341 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
7644371 AAGAAGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:7646387 original size:16 final size:16
Alignment explanation
Indices: 7646366--7646398 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7646356 TTGGTTTGTT
7646366 CAGTTGCTGCAAAAGA
1 CAGTTGCTGCAAAAGA
7646382 CAGTTGCTGCAAAAGA
1 CAGTTGCTGCAAAAGA
7646398 C
1 C
7646399 TAAGCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (16 bp):
CAGTTGCTGCAAAAGA
Found at i:7650921 original size:12 final size:12
Alignment explanation
Indices: 7650886--7650921 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
7650876 AGACTCATGG
7650886 AAGGTTCTTTTT
1 AAGGTTCTTTTT
*
7650898 AAGAGTTGTTTTT
1 AAG-GTTCTTTTT
7650911 AAGGTTCTTTT
1 AAGGTTCTTTT
7650922 ATCATTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (12 bp):
AAGGTTCTTTTT
Found at i:7677136 original size:158 final size:158
Alignment explanation
Indices: 7676846--7677157 Score: 561
Period size: 158 Copynumber: 2.0 Consensus size: 158
7676836 ATTTTGGTTG
*
7676846 GTTTGGTCTTTGATCTCATAGGCATGTTGAAATCCTTAATGCATAATTGGATTGTTGAAATGGTA
1 GTTTGGTCTTTGATCTCATAGGCATGTTGAAATCCTTAACGCATAATTGGATTGTTGAAATGGTA
* * * *
7676911 TTTATATGATAGGCTAATTGGTGAACTTCAATTGATGAATTTTGCATTTGGTATTTGTTGTTGAT
66 TTTATATGATAGGCTAATTGGTGAACTACAATTGATGAATTTGGCATTTGGTATTTGTCGTTCAT
7676976 TTGGTGAATGTATAAGCTTGGAAAGTTC
131 TTGGTGAATGTATAAGCTTGGAAAGTTC
* *
7677004 GTTTGGTCTTTGATGTCATAGGCATGTTGAAATCCTTAACGCATACTTGGATTGTTGAAATGGTA
1 GTTTGGTCTTTGATCTCATAGGCATGTTGAAATCCTTAACGCATAATTGGATTGTTGAAATGGTA
7677069 TTTATATGATAGGCTAATTGGTGAACTACAATTGATGAATTTGGCATTTGGTATTTGTCGTTCAT
66 TTTATATGATAGGCTAATTGGTGAACTACAATTGATGAATTTGGCATTTGGTATTTGTCGTTCAT
7677134 TTGGTGAATGTATAAGCTTGGAAA
131 TTGGTGAATGTATAAGCTTGGAAA
7677158 TTTAGTTTTG
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 147 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (158 bp):
GTTTGGTCTTTGATCTCATAGGCATGTTGAAATCCTTAACGCATAATTGGATTGTTGAAATGGTA
TTTATATGATAGGCTAATTGGTGAACTACAATTGATGAATTTGGCATTTGGTATTTGTCGTTCAT
TTGGTGAATGTATAAGCTTGGAAAGTTC
Found at i:7690943 original size:54 final size:54
Alignment explanation
Indices: 7690841--7690945 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 54
7690831 GCGTGTGTGG
**
7690841 CAACTCAGAGAGTTACACGGCCTAGCACACAGGCGGGCACACGGGCGTTTGTAA
1 CAACTCAGAGAGTTACACGGCCTAGCACACAGGCGGGCACACAAGCGTTTGTAA
* * *
7690895 CAACTCAGAGAGTTACACTGCCTAGCACAC-GGTCTGGCACATAAGCGTTTG
1 CAACTCAGAGAGTTACACGGCCTAGCACACAGG-CGGGCACACAAGCGTTTG
7690946 GGGCATCTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
53 2 0.04
54 43 0.96
ACGTcount: A:0.28, C:0.28, G:0.27, T:0.18
Consensus pattern (54 bp):
CAACTCAGAGAGTTACACGGCCTAGCACACAGGCGGGCACACAAGCGTTTGTAA
Found at i:7690956 original size:54 final size:54
Alignment explanation
Indices: 7690839--7690965 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 54
7690829 GGGCGTGTGT
** *
7690839 GGCAACTCAGAGAGTTACACGGCCTAGCACACAGGCGGGCACACGGGCGTTTGT
1 GGCAACTCAGAGAGTTACACGGCCTAGCACACAGGCGGGCACACAAGCGTTTGG
** * * *
7690893 AACAACTCAGAGAGTTACACTGCCTAGCACAC-GGTCTGGCACATAAGCGTTTGG
1 GGCAACTCAGAGAGTTACACGGCCTAGCACACAGG-CGGGCACACAAGCGTTTGG
* **
7690947 GGCATCTCAGTTAGTTACA
1 GGCAACTCAGAGAGTTACA
7690966 AAGGTGAGGA
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
53 2 0.03
54 57 0.97
ACGTcount: A:0.27, C:0.26, G:0.28, T:0.20
Consensus pattern (54 bp):
GGCAACTCAGAGAGTTACACGGCCTAGCACACAGGCGGGCACACAAGCGTTTGG
Found at i:7693076 original size:26 final size:26
Alignment explanation
Indices: 7693034--7693092 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
7693024 TATTTTCTCG
* *
7693034 AAATTTTACCAGAGGTAGAATCGTCA
1 AAATTTTACAAGAGGTAAAATCGTCA
*
7693060 AAATTTTACAAGGGGTAAAATCGTCA
1 AAATTTTACAAGAGGTAAAATCGTCA
*
7693086 AATTTTT
1 AAATTTT
7693093 GTTGGGAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (26 bp):
AAATTTTACAAGAGGTAAAATCGTCA
Found at i:7698173 original size:40 final size:38
Alignment explanation
Indices: 7698129--7698217 Score: 88
Period size: 40 Copynumber: 2.2 Consensus size: 38
7698119 ATAAAGAATA
* * *
7698129 ATATTTTTATATTAAATTACATTAAAATATTCTTATTTTT
1 ATATTTTTATATTAAA-AACATTAAAACATT-TTATTTAT
* **
7698169 ATATTAAATTATATTAAAAATTTTAAAACATTTTATTTAT
1 ATATT--TTTATATTAAAAACATTAAAACATTTTATTTAT
7698209 ATATTTTTA
1 ATATTTTTA
7698218 AATTTGGAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
38 3 0.08
40 17 0.43
41 10 0.25
42 10 0.25
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (38 bp):
ATATTTTTATATTAAAAACATTAAAACATTTTATTTAT
Found at i:7698923 original size:24 final size:24
Alignment explanation
Indices: 7698896--7698947 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7698886 TTAGTAAGTC
*
7698896 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7698920 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7698944 AAAT
1 AAAT
7698948 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7700893 original size:24 final size:24
Alignment explanation
Indices: 7700866--7700917 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7700856 TTAGTAAGTC
*
7700866 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7700890 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7700914 AAAT
1 AAAT
7700918 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7702310 original size:21 final size:21
Alignment explanation
Indices: 7702278--7702324 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7702268 TATTGAAACA
*
7702278 AGAAATCCCATATAA-TAAAT
1 AGAAATCCCATAAAACTAAAT
*
7702298 AGAAATGCCCATAAAACTTAAT
1 AGAAAT-CCCATAAAACTAAAT
7702320 AGAAA
1 AGAAA
7702325 AACAAGCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 8 0.35
22 9 0.39
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.21
Consensus pattern (21 bp):
AGAAATCCCATAAAACTAAAT
Found at i:7702778 original size:19 final size:19
Alignment explanation
Indices: 7702754--7702790 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7702744 GACATCTTTA
* *
7702754 AATTTTGTTTTTTTTTTCC
1 AATTTTCTTTTTCTTTTCC
7702773 AATTTTCTTTTTCTTTTC
1 AATTTTCTTTTTCTTTTC
7702791 TTGTTTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.14, G:0.03, T:0.73
Consensus pattern (19 bp):
AATTTTCTTTTTCTTTTCC
Found at i:7719038 original size:30 final size:29
Alignment explanation
Indices: 7718930--7719072 Score: 108
Period size: 30 Copynumber: 4.8 Consensus size: 29
7718920 AGGACCAAAA
* * * **
7718930 TTTTCAAAATGGTCATATAAGGTTTAACC
1 TTTTTAAAATGCTCAAATAAGGTCAAACC
7718959 TTTTATAAAATTGCTCAAATGAAGGTCAAACC
1 TTTT-TAAAA-TGCTCAAAT-AAGGTCAAACC
* * * * *
7718991 -TTTCAAAATGGTTAAATATGATTCAAACC
1 TTTTTAAAATGCTCAAATAAG-GTCAAACC
* *
7719020 TTTTTAAAATGCTCAAATAAGGGTAAAACA
1 TTTTTAAAATGCTCAAATAA-GGTCAAACC
*
7719050 TTTTCAAAAGTGCTCAAATAAGG
1 TTTTTAAAA-TGCTCAAATAAGG
7719073 GATTCTCAAA
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
28 2 0.02
29 18 0.20
30 38 0.43
31 22 0.25
32 9 0.10
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (29 bp):
TTTTTAAAATGCTCAAATAAGGTCAAACC
Found at i:7719055 original size:60 final size:61
Alignment explanation
Indices: 7718929--7719071 Score: 159
Period size: 60 Copynumber: 2.4 Consensus size: 61
7718919 AAGGACCAAA
* * * *
7718929 ATTTTCAAAATGGTCATATAAGGTTTAACCTTTTATAAAATTGCTCAAATGAAGGTCAAAC
1 ATTTTCAAAATGGTCAAATAAGATTAAACCTTTTATAAAATTGCTCAAATGAAGGTAAAAC
* * *
7718990 -CTTTCAAAATGGTTAAATATGATTCAAACCTTTT-TAAAA-TGCTCAAAT-AAGGGTAAAAC
1 ATTTTCAAAATGGTCAAATAAGATT-AAACCTTTTATAAAATTGCTCAAATGAA-GGTAAAAC
*
7719049 ATTTTCAAAAGTGCTCAAATAAG
1 ATTTTCAAAA-TGGTCAAATAAG
7719072 GGATTCTCAA
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
58 2 0.03
59 16 0.24
60 32 0.48
61 17 0.25
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (61 bp):
ATTTTCAAAATGGTCAAATAAGATTAAACCTTTTATAAAATTGCTCAAATGAAGGTAAAAC
Found at i:7719064 original size:31 final size:30
Alignment explanation
Indices: 7719015--7719073 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
7719005 AATATGATTC
* *
7719015 AAACCTTTTTAAAATGCTCAAATAAGGGTA
1 AAACATTTTCAAAATGCTCAAATAAGGGTA
7719045 AAACATTTTCAAAAGTGCTCAAATAAGGG
1 AAACATTTTCAAAA-TGCTCAAATAAGGG
7719074 ATTCTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (30 bp):
AAACATTTTCAAAATGCTCAAATAAGGGTA
Found at i:7723362 original size:104 final size:103
Alignment explanation
Indices: 7723018--7723386 Score: 614
Period size: 103 Copynumber: 3.6 Consensus size: 103
7723008 AACCGTTATC
** * *
7723018 GGTGGATCCCGCACTTAGCACCACCACTGAATCGGGAAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
*
7723083 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAT
*
7723121 GGTGGATATCGCACTTAGCATCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
7723186 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAT
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAT
7723224 GGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
7723289 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAT
65 AATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATAT
* **
7723329 GGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
7723387 TTTATATACA
Statistics
Matches: 252, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
103 125 0.50
104 86 0.34
105 40 0.16
106 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAT
Found at i:7733358 original size:41 final size:41
Alignment explanation
Indices: 7733297--7733445 Score: 158
Period size: 41 Copynumber: 3.6 Consensus size: 41
7733287 CATAATTTAA
*
7733297 CATATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CATA-TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
* * *
7733339 CATATCACTGGCACGTAGCCTGCTAGGTTTATAACCTGATT
1 CATATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
** ** **
7733380 C-TGATCACCGGCACTTAGCCTGCTAGATTTATAGTCTGAAA
1 CAT-ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
* *
7733421 AAT-TCACCGGCATTTAGCCTGCTAG
1 CATATCACCGGCACTTAGCCTGCTAG
7733446 CCGCTTAGCC
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 22 0.24
41 65 0.71
42 5 0.05
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (41 bp):
CATATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
Found at i:7733459 original size:40 final size:40
Alignment explanation
Indices: 7733300--7733466 Score: 108
Period size: 41 Copynumber: 4.1 Consensus size: 40
7733290 AATTTAACAT
***
7733300 ATTCACCGGCACTTAGCCTGCTAG-GCTTATAGCCTGATTC
1 ATTCACCGGCACTTAGCCTGCTAGAGC-TATAGCCTGAAAA
* * * * **
7733340 ATATCACTGGCACGTAGCCTGCTAG-GTTTATAACCTG-ATT
1 AT-TCACCGGCACTTAGCCTGCTAGAG-CTATAGCCTGAAAA
* ** *
7733380 CTGATCACCGGCACTTAGCCTGCTAGATTTATAGTCTGAAAA
1 AT--TCACCGGCACTTAGCCTGCTAGAGCTATAGCCTGAAAA
* *
7733422 ATTCACCGGCATTTAGCCTGCTAGCCGCT-TAGCCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTAG-AGCTATAGCCTGAAAA
*
7733462 TTTCA
1 ATTCA
7733467 ATTTCACAGA
Statistics
Matches: 100, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
40 39 0.39
41 59 0.59
42 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (40 bp):
ATTCACCGGCACTTAGCCTGCTAGAGCTATAGCCTGAAAA
Found at i:7736002 original size:18 final size:18
Alignment explanation
Indices: 7735973--7736034 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
7735963 AAAAAAATAT
*
7735973 TTTGAAATTGAATAACGA
1 TTTGAAAATGAATAACGA
* * *
7735991 TTTGTAAATGAATAATGT
1 TTTGAAAATGAATAACGA
7736009 TTTGAAAATGAACTACACGA
1 TTTGAAAATGAA-TA-ACGA
7736029 TTTGAA
1 TTTGAA
7736035 GTTAACATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
18 25 0.71
19 2 0.06
20 8 0.23
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (18 bp):
TTTGAAAATGAATAACGA
Found at i:7740880 original size:18 final size:18
Alignment explanation
Indices: 7740857--7740895 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7740847 GTAATGTCGG
7740857 CCACACGGGCGTATGGGC
1 CCACACGGGCGTATGGGC
* *
7740875 CCACACGGGCTTGTGGGC
1 CCACACGGGCGTATGGGC
7740893 CCA
1 CCA
7740896 TTTTCACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.36, G:0.36, T:0.13
Consensus pattern (18 bp):
CCACACGGGCGTATGGGC
Found at i:7741866 original size:18 final size:18
Alignment explanation
Indices: 7741817--7741866 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
7741807 AAAAAAAATA
*
7741817 TTTTGAAATTGAATAACG
1 TTTTGAAAATGAATAACG
* * *
7741835 ATTTGTAAATGAATAATG
1 TTTTGAAAATGAATAACG
*
7741853 TTTTGAAAACGAAT
1 TTTTGAAAATGAAT
7741867 GACACGATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.38
Consensus pattern (18 bp):
TTTTGAAAATGAATAACG
Found at i:7747373 original size:24 final size:24
Alignment explanation
Indices: 7747346--7747397 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7747336 TTAGTAAGTC
*
7747346 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7747370 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7747394 AAAT
1 AAAT
7747398 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7749329 original size:24 final size:24
Alignment explanation
Indices: 7749302--7749353 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7749292 TTAGTAAGTC
*
7749302 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7749326 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7749350 AAAT
1 AAAT
7749354 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7752218 original size:22 final size:21
Alignment explanation
Indices: 7752169--7752215 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7752159 ATTGAGCCAG
7752169 ATTTCTTTGTCTAATTTCTCTT
1 ATTTCTTTGTCT-ATTTCTCTT
*
7752191 AATTCTTTGTCT-TTTCTCTCT
1 ATTTCTTTGTCTATTTCTCT-T
7752212 ATTT
1 ATTT
7752216 TCTCCTCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
22 11 0.50
ACGTcount: A:0.13, C:0.19, G:0.04, T:0.64
Consensus pattern (21 bp):
ATTTCTTTGTCTATTTCTCTT
Found at i:7758718 original size:20 final size:20
Alignment explanation
Indices: 7758693--7758730 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7758683 TACAAGTACG
7758693 TTTCTCTTTCTCTTTCTTTT
1 TTTCTCTTTCTCTTTCTTTT
7758713 TTTCTCTTTCTCTTTCTT
1 TTTCTCTTTCTCTTTCTT
7758731 AGCTTAGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTCTCTTTCTCTTTCTTTT
Found at i:7759450 original size:27 final size:27
Alignment explanation
Indices: 7759413--7759468 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
7759403 GGGAGATGAG
7759413 AAGGAAGGAAAAGA-ACAAAAAAGAAA
1 AAGGAAGGAAAAGATACAAAAAAGAAA
* * *
7759439 AAGGAAAGGAAATGATATAATAAAGAAA
1 AAGG-AAGGAAAAGATACAAAAAAGAAA
7759467 AA
1 AA
7759469 ATAAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 9 0.36
28 12 0.48
ACGTcount: A:0.70, C:0.02, G:0.21, T:0.07
Consensus pattern (27 bp):
AAGGAAGGAAAAGATACAAAAAAGAAA
Found at i:7759484 original size:43 final size:39
Alignment explanation
Indices: 7759420--7759509 Score: 99
Period size: 42 Copynumber: 2.2 Consensus size: 39
7759410 GAGAAGGAAG
* *
7759420 GAAAAGAACAAAAAAGAAAAAGGAAAGGAAATGATATAATAAA
1 GAAAA-AACAAAAAA-AAAAAAGAAAGGAAAGGA-A-AATAAA
* *
7759463 GAAAAAATAAAAAAAATAAAAGAAATGAAAGGAAAATAAA
1 GAAAAAACAAAAAAAA-AAAAGAAAGGAAAGGAAAATAAA
7759503 GAAAAAA
1 GAAAAAA
7759510 GGTTTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 13 0.31
41 3 0.07
42 21 0.50
43 5 0.12
ACGTcount: A:0.74, C:0.01, G:0.16, T:0.09
Consensus pattern (39 bp):
GAAAAAACAAAAAAAAAAAAGAAAGGAAAGGAAAATAAA
Found at i:7759508 original size:10 final size:10
Alignment explanation
Indices: 7759457--7759508 Score: 54
Period size: 9 Copynumber: 5.2 Consensus size: 10
7759447 GAAATGATAT
7759457 AATAAAGAAAA
1 AATAAAG-AAA
7759468 AATAAA-AAA
1 AATAAAGAAA
*
7759477 AATAAA-AGA
1 AATAAAGAAA
*
7759486 AATGAAAGGAA
1 AAT-AAAGAAA
7759497 AATAAAGAAA
1 AATAAAGAAA
7759507 AA
1 AA
7759509 AGGTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 14 0.40
10 11 0.31
11 10 0.29
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.10
Consensus pattern (10 bp):
AATAAAGAAA
Found at i:7759938 original size:9 final size:9
Alignment explanation
Indices: 7759924--7760035 Score: 170
Period size: 9 Copynumber: 12.4 Consensus size: 9
7759914 GTAGTGATTC
7759924 AATTCGGTT
1 AATTCGGTT
7759933 AATTCGGTT
1 AATTCGGTT
*
7759942 AATTCGGGT
1 AATTCGGTT
* *
7759951 AATCCAGTT
1 AATTCGGTT
7759960 AATTCGGTT
1 AATTCGGTT
*
7759969 AATTCGGGT
1 AATTCGGTT
*
7759978 AATCCGGTT
1 AATTCGGTT
7759987 AATTCGGTT
1 AATTCGGTT
7759996 AATTCGGTT
1 AATTCGGTT
*
7760005 AATTCGGGT
1 AATTCGGTT
7760014 AATTCGGTT
1 AATTCGGTT
7760023 AATTCGGTT
1 AATTCGGTT
7760032 AATT
1 AATT
7760036 TTTAACCAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 91 1.00
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7763511 original size:91 final size:91
Alignment explanation
Indices: 7763358--7763595 Score: 243
Period size: 91 Copynumber: 2.6 Consensus size: 91
7763348 GTACTTGTAT
* * * * ** *
7763358 TTTAAAAAT-GTCTAATATGG--CCTAAACTATTAATCTGTGTATTATTTGGTACAAATATTTTC
1 TTTAAAAATCATC-AATATGGTACCTAAACAATCAATTTGTGTATTATTTGGTACCTATACTTTC
*
7763420 ATAAAATG-TCTAATGTAGTACCTGTAC
65 ATAAAATGCTC-AATGTAGTACCTATAC
* * * *
7763447 TTTAAAAAT-ATCTATAATGGTACTTGAACAATCAATTTGTGTATTATTTAGTACCTATACTTTC
1 TTTAAAAATCATCAAT-ATGGTACCTAAACAATCAATTTGTGTATTATTTGGTACCTATACTTTC
* *
7763511 ATAAAATGCTCAATGTGGTACTTATAC
65 ATAAAATGCTCAATGTAGTACCTATAC
* * * *
7763538 TTTGAAAATCTTCAATATGGTACCTAAACTATCAATTTATGTATTATTATGGTACCTA
1 TTTAAAAATCATCAATATGGTACCTAAACAATCAATTTGTGTATTATT-TGGTACCTA
7763596 AAGTTAACAC
Statistics
Matches: 121, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
88 2 0.02
89 15 0.12
91 90 0.74
92 14 0.12
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (91 bp):
TTTAAAAATCATCAATATGGTACCTAAACAATCAATTTGTGTATTATTTGGTACCTATACTTTCA
TAAAATGCTCAATGTAGTACCTATAC
Found at i:7766021 original size:15 final size:15
Alignment explanation
Indices: 7766001--7766032 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7765991 CATTTCACTA
*
7766001 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
7766016 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
7766031 TT
1 TT
7766033 TGTATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:7777144 original size:29 final size:31
Alignment explanation
Indices: 7777121--7777178 Score: 86
Period size: 29 Copynumber: 1.9 Consensus size: 31
7777111 TTTTATTTAC
7777121 AAGATAAACA-TTAA-ATTAAATTTAATATT
1 AAGATAAACACTTAATATTAAATTTAATATT
7777150 AAGATAAACACTTTAATATTAAA-TTAATA
1 AAGATAAACAC-TTAATATTAAATTTAATA
7777179 AAATACTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 10 0.38
31 10 0.38
32 6 0.23
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.36
Consensus pattern (31 bp):
AAGATAAACACTTAATATTAAATTTAATATT
Found at i:7779062 original size:37 final size:35
Alignment explanation
Indices: 7778999--7779121 Score: 99
Period size: 37 Copynumber: 3.3 Consensus size: 35
7778989 AATCCAAAAA
*
7778999 TAATATTATTTTAATAGTTTAATATTAAATTTAGTT
1 TAATATTATCTTAATAGTTTAATATT-AATTTAGTT
* *
7779035 TAATACTTATCTTAATAGTATT-TTATTAATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAATTTAGT-T
* *
7779072 TAAAGTGATTATATTAATA--TTAATATTTAATTTAATT
1 T-AA-T-ATTATCTTAATAGTTTAATA-TTAATTTAGTT
7779109 TAATATTTATCTT
1 TAATA-TTATCTT
7779122 GTAGATAAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 19
0.74 0.06 0.20
Matches are distributed among these distances:
34 1 0.01
35 7 0.10
36 16 0.22
37 22 0.31
38 14 0.19
39 11 0.15
40 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.54
Consensus pattern (35 bp):
TAATATTATCTTAATAGTTTAATATTAATTTAGTT
Found at i:7779068 original size:5 final size:6
Alignment explanation
Indices: 7779058--7779115 Score: 52
Period size: 5 Copynumber: 9.7 Consensus size: 6
7779048 AATAGTATTT
7779058 TATTAA T-TTAA TATTAAA GTGATT-A TATTAA TATTAA TATTTAA T-TTAA
1 TATTAA TATTAA TATT-AA -T-ATTAA TATTAA TATTAA TA-TTAA TATTAA
7779107 T-TTAA TATT
1 TATTAA TATT
7779116 TATCTTGTAG
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
5 18 0.40
6 15 0.33
7 8 0.18
8 1 0.02
9 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (6 bp):
TATTAA
Found at i:7787772 original size:14 final size:14
Alignment explanation
Indices: 7787753--7787792 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7787743 TTGATTGCCA
7787753 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7787767 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7787781 GGAAAATGTTTT
1 GTAAAATGTTTT
7787793 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7787799 original size:34 final size:35
Alignment explanation
Indices: 7787761--7787827 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7787751 CAGTAAAATG
*
7787761 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7787795 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7787828 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7787801 original size:20 final size:20
Alignment explanation
Indices: 7787776--7787815 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7787766 CGTAAAATGA
*
7787776 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7787796 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7787816 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7787831 original size:14 final size:15
Alignment explanation
Indices: 7787755--7787831 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7787745 GATTGCCAGT
* *
7787755 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
7787769 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7787783 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7787803 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7787818 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7787832 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7788010 original size:22 final size:24
Alignment explanation
Indices: 7787985--7788035 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
7787975 TTATTTATAA
7787985 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
7788005 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
7788031 ATAAA
1 ATAAA
7788036 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:7792365 original size:20 final size:19
Alignment explanation
Indices: 7792334--7792430 Score: 76
Period size: 19 Copynumber: 5.2 Consensus size: 19
7792324 ATGATTATTG
7792334 TTATTGTTATTAAAATATATA
1 TTATT-TTATTAAAATATA-A
*
7792355 TTATTTTATTAAATTATAA
1 TTATTTTATTAAAATATAA
* * *
7792374 TAATCTTATTAAAATTTAA
1 TTATTTTATTAAAATATAA
* * *
7792393 TAATATTCTT--AATATAA
1 TTATTTTATTAAAATATAA
7792410 TTA--TTATTAAAATATGAA
1 TTATTTTATTAAAATAT-AA
7792428 TTA
1 TTA
7792431 ATAAAATTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
15 4 0.06
17 13 0.21
18 5 0.08
19 24 0.38
20 12 0.19
21 5 0.08
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TTATTTTATTAAAATATAA
Found at i:7792382 original size:19 final size:19
Alignment explanation
Indices: 7792340--7792396 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
7792330 ATTGTTATTG
* * *
7792340 TTATTAAAATATATATTATT
1 TTATTAAATTATA-ATAATC
7792360 TTATTAAATTATAATAATC
1 TTATTAAATTATAATAATC
7792379 TTATTAAAATT-TAATAAT
1 TTATT-AAATTATAATAAT
7792397 ATTCTTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TTATTAAATTATAATAATC
Found at i:7792411 original size:22 final size:22
Alignment explanation
Indices: 7792370--7792411 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7792360 TTATTAAATT
*
7792370 ATAATAATCTTATTAAAATTTA
1 ATAATAATCTTAATAAAATTTA
* *
7792392 ATAATATTCTTAATATAATT
1 ATAATAATCTTAATAAAATT
7792412 ATTATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAATAATCTTAATAAAATTTA
Found at i:7795703 original size:25 final size:25
Alignment explanation
Indices: 7795675--7795723 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7795665 TTCAAGCGAG
7795675 CTATATCAGGAA-GCTCACAAAGAGC
1 CTATATCA-GAATGCTCACAAAGAGC
* *
7795700 CTATATTAGAATGCTCATAAAGAG
1 CTATATCAGAATGCTCACAAAGAG
7795724 TTGCGGTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.22
Consensus pattern (25 bp):
CTATATCAGAATGCTCACAAAGAGC
Found at i:7797755 original size:31 final size:31
Alignment explanation
Indices: 7797718--7797777 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
7797708 CAGAGAAAGA
7797718 AAGTTTTACTAGAAGTGTTAGAGAAAACAAC
1 AAGTTTTACTAGAAGTGTTAGAGAAAACAAC
7797749 AAGTTTTACTAGAAGTGTTAGAGAAAACA
1 AAGTTTTACTAGAAGTGTTAGAGAAAACA
7797778 GCGAGACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.45, C:0.08, G:0.20, T:0.27
Consensus pattern (31 bp):
AAGTTTTACTAGAAGTGTTAGAGAAAACAAC
Found at i:7798124 original size:21 final size:21
Alignment explanation
Indices: 7798074--7798125 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7798064 GAGTTAGGAG
*
7798074 GAAATGAGATTAAAAAAGAAA
1 GAAATGAAATTAAAAAAGAAA
* *
7798095 AAAAT-AAATTAAGTAAAG-AA
1 GAAATGAAATTAA-AAAAGAAA
7798115 GAAATGAAATT
1 GAAATGAAATT
7798126 TACAACGGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.19
Consensus pattern (21 bp):
GAAATGAAATTAAAAAAGAAA
Found at i:7803467 original size:37 final size:37
Alignment explanation
Indices: 7803426--7803502 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
7803416 ACTTCTCTGG
7803426 TTATGTCTCCTTGCTATGTGAAACCTTTTTCATCATT
1 TTATGTCTCCTTGCTATGTGAAACCTTTTTCATCATT
7803463 TTATGTCTCCTTGCTATGTGAAACCTTTTTCATCATT
1 TTATGTCTCCTTGCTATGTGAAACCTTTTTCATCATT
7803500 TTA
1 TTA
7803503 ACTTTCGGAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.19, C:0.21, G:0.10, T:0.49
Consensus pattern (37 bp):
TTATGTCTCCTTGCTATGTGAAACCTTTTTCATCATT
Found at i:7809929 original size:3 final size:3
Alignment explanation
Indices: 7809921--7809949 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7809911 AAGTCTCTAA
7809921 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7809950 AAGTATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7814884 original size:261 final size:263
Alignment explanation
Indices: 7814377--7814884 Score: 632
Period size: 261 Copynumber: 1.9 Consensus size: 263
7814367 AAAACAATGC
* * * * *
7814377 AAATTAATACAAAAATATCATGTCCACTGAATGATCCCAAAAGAGGAGAAAGACAAAGCGATTAT
1 AAATTAATACAAAAATACCATGTCCACTAAATAATCCCAAAAGAGGAGAAAGACAAAGCAACTAT
7814442 AGTCATAACACTCGAAAAATTCAGAAACAAACTAAAAATGTATCACATTGATCAAACCATTGAAA
66 AGTCATAACACTCGAAAAATTCAGAAACAAACTAAAAATGTATCACATTGATCAAACCATTGAAA
* * *
7814507 TTGCATCAGAACCCTGTCATTATCAGACCAACCTAATGATGAACTCTAATTAACCAAAAAACCAC
131 TTGCATCAGAACCCTATCATTATCAGACCAACCTAACGATGAACTCAAATTAACCAAAAAACCAC
* * * *
7814572 TGCCAAGACCCCAAAAGACCCACCACATTAGTGATGCACAAAATGTCAAATCCCATATAAGACAT
196 TACCAAGACCCCAAAAAACCCACCACATCAATGATGCACAAAATGTCAAATCCCATATAAGACAT
7814637 TGA
261 TGA
* *
7814640 AAATTAATA-AACAAATGCCATGTCGACTAAATAATCCC-AAA-AGGAGAAAGACAAA-CTAACT
1 AAATTAATACAA-AAATACCATGTCCACTAAATAATCCCAAAAGAGGAGAAAGACAAAGC-AACT
* *** * * * * * * *
7814701 ATAGTCATAACATTCGGGGAATTCAGAATCAAATTAAAGATGTCTCGCCTTGATCAAACTATTGA
64 ATAGTCATAACACTCGAAAAATTCAGAAACAAACTAAAAATGTATCACATTGATCAAACCATTGA
* * * * *
7814766 AATTGCATCATAACCCTATCATTATCAGACCAACTTGACGATGATA-TCAAATTAACCAAGAAAT
129 AATTGCATCAGAACCCTATCATTATCAGACCAACCTAACGATGA-ACTCAAATTAACCAAAAAAC
* * * *
7814830 CACTATCGAGACCCCAAAAAACTCATCACATCAATGATGCACAAAA-GATCAAATC
193 CACTACCAAGACCCCAAAAAACCCACCACATCAATGATGCACAAAATG-TCAAATC
7814885 TCAAATAATT
Statistics
Matches: 207, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
260 2 0.01
261 169 0.82
262 6 0.03
263 30 0.14
ACGTcount: A:0.45, C:0.22, G:0.12, T:0.22
Consensus pattern (263 bp):
AAATTAATACAAAAATACCATGTCCACTAAATAATCCCAAAAGAGGAGAAAGACAAAGCAACTAT
AGTCATAACACTCGAAAAATTCAGAAACAAACTAAAAATGTATCACATTGATCAAACCATTGAAA
TTGCATCAGAACCCTATCATTATCAGACCAACCTAACGATGAACTCAAATTAACCAAAAAACCAC
TACCAAGACCCCAAAAAACCCACCACATCAATGATGCACAAAATGTCAAATCCCATATAAGACAT
TGA
Found at i:7815976 original size:18 final size:18
Alignment explanation
Indices: 7815955--7816020 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
7815945 AAATATTTAA
* *
7815955 ATTTGATATTATATATTT
1 ATTTAATATTATAAATTT
*
7815973 ATTTAATTTTATAAATTTT
1 ATTTAATATTATAAA-TTT
* *
7815992 AATATAATA-TAAAACATTT
1 -ATTTAATATTATAA-ATTT
7816011 ATTTAATATT
1 ATTTAATATT
7816021 TCAGGTGAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
18 19 0.51
19 11 0.30
20 7 0.19
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTTAATATTATAAATTT
Found at i:7825461 original size:21 final size:20
Alignment explanation
Indices: 7825437--7825475 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7825427 TCAAATTATG
7825437 TTAAAAATTAAAATATAAAGA
1 TTAAAAATTAAAAT-TAAAGA
**
7825458 TTAAATTTTAAAATTAAA
1 TTAAAAATTAAAATTAAA
7825476 TACATTAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
TTAAAAATTAAAATTAAAGA
Found at i:7826322 original size:16 final size:16
Alignment explanation
Indices: 7826301--7826341 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
7826291 TATGGTTATG
*
7826301 AAATAAATATTAAGAT
1 AAATAAATATAAAGAT
*
7826317 AAATAAAGATAAAGAT
1 AAATAAATATAAAGAT
*
7826333 AATTAAATA
1 AAATAAATA
7826342 ATATTTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (16 bp):
AAATAAATATAAAGAT
Found at i:7826377 original size:21 final size:21
Alignment explanation
Indices: 7826338--7826386 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7826328 AAGATAATTA
* *
7826338 AATAATATTTATTTTTATGAT
1 AATAATATTTATCTCTATGAT
*
7826359 AATAGTATTTATCTCTATGA-
1 AATAATATTTATCTCTATGAT
7826379 AA-AATATT
1 AATAATATT
7826387 AAAAATAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 5 0.21
20 2 0.08
21 17 0.71
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (21 bp):
AATAATATTTATCTCTATGAT
Found at i:7826887 original size:18 final size:18
Alignment explanation
Indices: 7826847--7826889 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7826837 AAATTCAACT
7826847 TTTAAAATAAAATATTAA
1 TTTAAAATAAAATATTAA
*
7826865 ATTAAAATTAAAATATT-A
1 TTTAAAA-TAAAATATTAA
7826883 TTTAAAA
1 TTTAAAA
7826890 GTAATTAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTTAAAATAAAATATTAA
Found at i:7830630 original size:17 final size:18
Alignment explanation
Indices: 7830595--7830636 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7830585 AACATATATG
*
7830595 TAAAGTGTATAATAAAAT
1 TAAAATGTATAATAAAAT
7830613 TAAAATGTATAA-AAAAT
1 TAAAATGTATAATAAAAT
7830630 TCAAAAT
1 T-AAAAT
7830637 AAAGTTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (18 bp):
TAAAATGTATAATAAAAT
Found at i:7844581 original size:17 final size:17
Alignment explanation
Indices: 7844559--7844592 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7844549 TAATTAAATT
7844559 AAATAAGATAATTTAAA
1 AAATAAGATAATTTAAA
**
7844576 AAATAATTTAATTTAAA
1 AAATAAGATAATTTAAA
7844593 TTCAAACCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
AAATAAGATAATTTAAA
Found at i:7845069 original size:6 final size:6
Alignment explanation
Indices: 7845058--7845083 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7845048 CATTTTCTAG
7845058 GAAAAT GAAAAT GAAAAT GAAAAT GA
1 GAAAAT GAAAAT GAAAAT GAAAAT GA
7845084 CATTTGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.15
Consensus pattern (6 bp):
GAAAAT
Found at i:7847865 original size:26 final size:26
Alignment explanation
Indices: 7847836--7847936 Score: 130
Period size: 26 Copynumber: 3.9 Consensus size: 26
7847826 ATTCTTGCGA
* *
7847836 ACTCATGCTTGGAATAGTCCTTGTGG
1 ACTCATACATGGAATAGTCCTTGTGG
*
7847862 ACTCATACATGGAATAATCCTTGTGG
1 ACTCATACATGGAATAGTCCTTGTGG
* **
7847888 AATCATACATGGAATAGTCCTTGCAG
1 ACTCATACATGGAATAGTCCTTGTGG
* *
7847914 ACTGATACAGGGAATAGTCCTTG
1 ACTCATACATGGAATAGTCCTTG
7847937 CAGACTCTTG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
ACTCATACATGGAATAGTCCTTGTGG
Found at i:7851836 original size:5 final size:5
Alignment explanation
Indices: 7851828--7851867 Score: 57
Period size: 5 Copynumber: 8.4 Consensus size: 5
7851818 AAAATATCAT
*
7851828 ATTTA ATTTA A-TTA ATTTG A-TTA ATTTA ATTTA ATTTA AT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT
7851868 CAAAATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 7 0.23
5 24 0.77
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (5 bp):
ATTTA
Found at i:7851844 original size:9 final size:9
Alignment explanation
Indices: 7851830--7851867 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
7851820 AATATCATAT
7851830 TTAATTTAA
1 TTAATTTAA
*
7851839 TTAATTTGA
1 TTAATTTAA
7851848 TTAATTTAA
1 TTAATTTAA
7851857 TTTAATTTAA
1 -TTAATTTAA
7851867 T
1 T
7851868 CAAAATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 17 0.65
10 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TTAATTTAA
Found at i:7857513 original size:33 final size:33
Alignment explanation
Indices: 7857436--7857513 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
7857426 CTATTATGTA
* * *
7857436 TTTACTATCCCATTGGATGATCTTTGTTCTTTG
1 TTTACTATCCCAGTGAATGATCTTTGTTCTATG
* *
7857469 TTTATTGTCCCAGTGAACT-ATCTTTGTTCTATG
1 TTTACTATCCCAGTGAA-TGATCTTTGTTCTATG
7857502 TTTACTATCCCA
1 TTTACTATCCCA
7857514 ACAGACTTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
33 36 0.97
34 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.49
Consensus pattern (33 bp):
TTTACTATCCCAGTGAATGATCTTTGTTCTATG
Found at i:7867435 original size:19 final size:19
Alignment explanation
Indices: 7867411--7867447 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7867401 ACCTTTATAA
*
7867411 ATTTTTTTTAATTGGGGTT
1 ATTTTTTGTAATTGGGGTT
*
7867430 ATTTTTTGTAATTTGGGT
1 ATTTTTTGTAATTGGGGT
7867448 AATTGCATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.22, T:0.62
Consensus pattern (19 bp):
ATTTTTTGTAATTGGGGTT
Found at i:7870169 original size:17 final size:18
Alignment explanation
Indices: 7870144--7870177 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7870134 TTGAATTCAA
*
7870144 ATATGAAATTAATTAAGT
1 ATATGAAATTAAATAAGT
7870162 ATAT-AAATTAAATAAG
1 ATATGAAATTAAATAAG
7870178 ACAAGTTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (18 bp):
ATATGAAATTAAATAAGT
Found at i:7874719 original size:27 final size:27
Alignment explanation
Indices: 7874666--7874728 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
7874656 TCTTCTTTTT
* * *
7874666 TTCTCTTTTTTTTTCATTCTCTTCTCC
1 TTCTCTTTTGTTTTCATTCCCTCCTCC
7874693 TTCTCTCTTTGTTTTCA-TCCCTCCTCC
1 TTCTCT-TTTGTTTTCATTCCCTCCTCC
7874720 ATTC-CTTTT
1 -TTCTCTTTT
7874729 AACGTAGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 3 0.10
27 16 0.52
28 12 0.39
ACGTcount: A:0.05, C:0.33, G:0.02, T:0.60
Consensus pattern (27 bp):
TTCTCTTTTGTTTTCATTCCCTCCTCC
Found at i:7874820 original size:22 final size:23
Alignment explanation
Indices: 7874799--7874849 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
7874789 GAAAAATTTA
*
7874799 ATTTTTCATTT-TTATT-TCTTT
1 ATTTTTCATTTCTTATTCCCTTT
*
7874820 ATTTTCCATTTCTTATTCCCTTT
1 ATTTTTCATTTCTTATTCCCTTT
7874843 ATTTTTC
1 ATTTTTC
7874850 TCTTTTCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.40
22 5 0.20
23 10 0.40
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.69
Consensus pattern (23 bp):
ATTTTTCATTTCTTATTCCCTTT
Found at i:7875970 original size:29 final size:28
Alignment explanation
Indices: 7875894--7875970 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 28
7875884 TTAACGGCTC
*
7875894 AGTGACTAAAATGTTACAACATGTTAACGTA
1 AGTGACTAAAATG-T--AACATGTTAACATA
** *
7875925 AGTGACTAAAACATAACATTTTAAACATA
1 AGTGACTAAAATGTAACATGTT-AACATA
7875954 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
7875971 CTGAGGTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 7 0.18
29 20 0.51
30 1 0.03
31 11 0.28
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (28 bp):
AGTGACTAAAATGTAACATGTTAACATA
Found at i:7886883 original size:2 final size:2
Alignment explanation
Indices: 7886876--7886907 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7886866 CTTTGTTTTA
7886876 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7886908 GGTTGTCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7889137 original size:20 final size:20
Alignment explanation
Indices: 7889112--7889151 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7889102 TACCCTCAAG
7889112 GTTCATTTTCCAATAACTCT
1 GTTCATTTTCCAATAACTCT
7889132 GTTCATTTTCCAATAACTCT
1 GTTCATTTTCCAATAACTCT
7889152 TTTACATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (20 bp):
GTTCATTTTCCAATAACTCT
Found at i:7897354 original size:22 final size:22
Alignment explanation
Indices: 7897329--7897373 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7897319 TTTAATAAAG
7897329 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
7897351 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
7897373 A
1 A
7897374 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:7900691 original size:22 final size:22
Alignment explanation
Indices: 7900666--7900710 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7900656 TTTAATAAAG
*
7900666 AAAATATCTACATAATATTCCT
1 AAAATATCTACAGAATATTCCT
*
7900688 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAGAATATTCCT
7900710 A
1 A
7900711 CATGTTTTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATATCTACAGAATATTCCT
Found at i:7908244 original size:13 final size:13
Alignment explanation
Indices: 7908226--7908259 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7908216 TCTAAGTAGG
7908226 GTCACACGGTCGT
1 GTCACACGGTCGT
7908239 GTCACACGGTCGT
1 GTCACACGGTCGT
*
7908252 GTTACACG
1 GTCACACG
7908260 CCTATGTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (13 bp):
GTCACACGGTCGT
Found at i:7908879 original size:22 final size:22
Alignment explanation
Indices: 7908838--7908891 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
7908828 CTTCAACTTT
*
7908838 ATTAATTAAGCTTTAATAAATC
1 ATTAATTAAGCTCTAATAAATC
7908860 ATTAATTAAGC-CTAATTAAATC
1 ATTAATTAAGCTCTAA-TAAATC
*
7908882 ACTTTATTAA
1 A-TTAATTAA
7908892 ACATAACCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 3 0.11
22 18 0.64
23 7 0.25
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTAATTAAGCTCTAATAAATC
Found at i:7910036 original size:5 final size:5
Alignment explanation
Indices: 7910026--7910179 Score: 308
Period size: 5 Copynumber: 30.8 Consensus size: 5
7910016 AGATGACTAT
7910026 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
7910076 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
7910126 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
7910176 ATAT
1 ATAT
7910180 GCATGTATTA
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 149 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATC
Found at i:7914911 original size:19 final size:20
Alignment explanation
Indices: 7914869--7914911 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7914859 TCATGTTTTC
*
7914869 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
7914889 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
7914907 TATTC
1 TATTC
7914912 CACAATCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:7915132 original size:21 final size:22
Alignment explanation
Indices: 7915103--7915175 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 22
7915093 TACTTGAAAA
*
7915103 GACATACGAGGTGCCTT-ATAC
1 GACACACGAGGTGCCTTAATAC
*
7915124 GACACACGAGGTG-TTTGAAATAC
1 GACACACGAGGTGCCTT--AATAC
*
7915147 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCT-TAATAC
7915170 GACACA
1 GACACA
7915176 TAAAGTGCTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
20 2 0.05
21 12 0.28
23 28 0.65
24 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (22 bp):
GACACACGAGGTGCCTTAATAC
Found at i:7915150 original size:23 final size:23
Alignment explanation
Indices: 7915120--7915198 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
7915110 GAGGTGCCTT
*
7915120 ATACGACACACGAGGTGTTTGAA
1 ATACGACACACGAGGTGCTTGAA
*
7915143 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCTTGAA
** *
7915166 ATACGACACATAAAGTGCTTGAA
1 ATACGACACACGAGGTGCTTGAA
*
7915189 ATATGACACA
1 ATACGACACA
7915199 TAAAGTGCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (23 bp):
ATACGACACACGAGGTGCTTGAA
Found at i:7915188 original size:46 final size:45
Alignment explanation
Indices: 7915078--7915229 Score: 143
Period size: 46 Copynumber: 3.4 Consensus size: 45
7915068 ACCTGATCAG
* *
7915078 TATACGGA-ACAT-AAGTACTTGAAA-AGACATACGAGGTGCCT--
1 TATAC-GACACATAAAGTGCTTGAAATAGACACACGAGGTGCCTGA
** * *
7915119 TATACGACACACGAGGTGTTTGAAATACGACACACGAGGTGCCTGA
1 TATACGACACATAAAGTGCTTGAAATA-GACACACGAGGTGCCTGA
* ** *
7915165 AATACGACACATAAAGTGCTTGAAATATGACACATAAAGTGCCTGA
1 TATACGACACATAAAGTGCTTGAAATA-GACACACGAGGTGCCTGA
*
7915211 TATACGATACATAAAGTGC
1 TATACGACACATAAAGTGC
7915230 CTGATCGGCT
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
40 2 0.02
41 8 0.09
42 9 0.10
43 1 0.01
44 15 0.17
46 54 0.61
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (45 bp):
TATACGACACATAAAGTGCTTGAAATAGACACACGAGGTGCCTGA
Found at i:7915234 original size:23 final size:23
Alignment explanation
Indices: 7915139--7915233 Score: 127
Period size: 23 Copynumber: 4.1 Consensus size: 23
7915129 ACGAGGTGTT
** *
7915139 TGAAATACGACACACGAGGTGCC
1 TGAAATACGACACATAAAGTGCC
*
7915162 TGAAATACGACACATAAAGTGCT
1 TGAAATACGACACATAAAGTGCC
*
7915185 TGAAATATGACACATAAAGTGCC
1 TGAAATACGACACATAAAGTGCC
* *
7915208 TGATATACGATACATAAAGTGCC
1 TGAAATACGACACATAAAGTGCC
7915231 TGA
1 TGA
7915234 TCGGCTTAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (23 bp):
TGAAATACGACACATAAAGTGCC
Found at i:7917677 original size:27 final size:27
Alignment explanation
Indices: 7917639--7917707 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
7917629 CTAATTTTTG
* *
7917639 CTCACGCAAGCTATAATATTCGGTCTA
1 CTCACACAAGCTATAATATTCGGGCTA
* * * *
7917666 CTCACACGAGCTGTGATATTGGGGCTA
1 CTCACACAAGCTATAATATTCGGGCTA
7917693 CTCACACAAGCTATA
1 CTCACACAAGCTATA
7917708 GATCAGGGTT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
CTCACACAAGCTATAATATTCGGGCTA
Found at i:7931888 original size:19 final size:21
Alignment explanation
Indices: 7931859--7931904 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
7931849 TATATAAAAA
* *
7931859 TTTTAAGTTTTACA-TAGTTT
1 TTTTAAGTTTTAAATTACTTT
7931879 TTTTAA-TTTTAAATTACTTT
1 TTTTAAGTTTTAAATTACTTT
7931899 TTTTAA
1 TTTTAA
7931905 ATATATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (21 bp):
TTTTAAGTTTTAAATTACTTT
Found at i:7934908 original size:29 final size:30
Alignment explanation
Indices: 7934875--7934954 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 30
7934865 ATAGTATTAT
7934875 TTTGCACTTCGGTGCTTATCATTGTAA-AA
1 TTTGCACTTCGGTGCTTATCATTGTAATAA
*
7934904 TTTGCACATT-GGTGCTTATC---GTAATTA
1 TTTGCAC-TTCGGTGCTTATCATTGTAATAA
*
7934931 TTGTGCACTTCAGTGCTTATCATT
1 TT-TGCACTTCGGTGCTTATCATT
7934955 ATTTGCACTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
26 4 0.10
27 5 0.12
28 14 0.33
29 17 0.40
30 2 0.05
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.44
Consensus pattern (30 bp):
TTTGCACTTCGGTGCTTATCATTGTAATAA
Found at i:7938036 original size:125 final size:125
Alignment explanation
Indices: 7937814--7938062 Score: 453
Period size: 125 Copynumber: 2.0 Consensus size: 125
7937804 CTTTTTGAGA
*
7937814 AAAACAACTTACTTAAGTAGATAATCTAAATGAGTCTGTAATCTTGTAAAAGAACTAAAGTAAGC
1 AAAACAACTTACTTAAGTAGATAATCTAAATGAGTCTGCAATCTTGTAAAAGAACTAAAGTAAGC
*
7937879 ATTTGATTCAAATACTAAGAAAGATTATTATGTCGTCTACAATTCCAATTGAGCAGATAT
66 ATTTGATTCAAATACTAAGAAAGATTATTATGTCGTCTACAATTCAAATTGAGCAGATAT
* *
7937939 AAAACAACTTTCTTCAGTAGATAATCTAAATGAGTCTGCAATCTTGTAAAAGAACTAAAGTAAGC
1 AAAACAACTTACTTAAGTAGATAATCTAAATGAGTCTGCAATCTTGTAAAAGAACTAAAGTAAGC
*
7938004 ATTTGATTCAAATACTAAGAAAGATTATTATGTCGTCTACAATTCAAATTGAGGAGATA
66 ATTTGATTCAAATACTAAGAAAGATTATTATGTCGTCTACAATTCAAATTGAGCAGATA
7938063 GCTAGTCTTG
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
125 119 1.00
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (125 bp):
AAAACAACTTACTTAAGTAGATAATCTAAATGAGTCTGCAATCTTGTAAAAGAACTAAAGTAAGC
ATTTGATTCAAATACTAAGAAAGATTATTATGTCGTCTACAATTCAAATTGAGCAGATAT
Found at i:7941752 original size:15 final size:15
Alignment explanation
Indices: 7941732--7941761 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7941722 GATCTTGGTG
7941732 GAATCAGCACTTAGC
1 GAATCAGCACTTAGC
7941747 GAATCAGCACTTAGC
1 GAATCAGCACTTAGC
7941762 AACCACCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (15 bp):
GAATCAGCACTTAGC
Found at i:7941851 original size:84 final size:84
Alignment explanation
Indices: 7941747--7941953 Score: 387
Period size: 84 Copynumber: 2.5 Consensus size: 84
7941737 AGCACTTAGC
*
7941747 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATGGCAACCCCTTT
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCCCTTT
7941812 CACAATCAAGGATACAGTG
66 CACAATCAAGGATACAGTG
*
7941831 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCTTT
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCCCTTT
*
7941896 CACAATCAAGGATACGGTG
66 CACAATCAAGGATACAGTG
7941915 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
7941954 AGTAATAACA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 120 1.00
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (84 bp):
GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCCCTTT
CACAATCAAGGATACAGTG
Found at i:7941861 original size:42 final size:41
Alignment explanation
Indices: 7941747--7941953 Score: 265
Period size: 42 Copynumber: 5.0 Consensus size: 41
7941737 AGCACTTAGC
7941747 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
* * * * * *
7941788 GAATCAACACATGGCAACC-CCTTTCACAATCAAGGATACAGTG
1 GAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATAC-GGG
7941831 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
* * *
7941872 GAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGGTG
1 GAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATACGG-G
7941915 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
7941954 AGTAATAACA
Statistics
Matches: 140, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
40 4 0.03
41 40 0.29
42 51 0.36
43 41 0.29
44 4 0.03
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (41 bp):
GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
Done.