Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 32 of 172
Found at i:7944111 original size:42 final size:42
Alignment explanation
Indices: 7943982--7944320 Score: 337
Period size: 42 Copynumber: 8.0 Consensus size: 42
7943972 TAACCGTTAC
* * ***
7943982 ACGGTGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACTTTACAATC-AAGGAT
* * * *
7944025 CTCGGTGGAATCAGCACTTAGAAACCACTTTATAATCAATGAT
1 -ACGGTGGAATCAGCACTTAGCAACCACTTTACAATCAAGGAT
*
7944068 ACGG-GGAATCAGCA-TATAGCAACCCCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACT-TAGCAACCACTTT-ACAATCAAGGAT
* * * *
7944110 ACGGTGGAATCAACACTTAGCAACCACATTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACTTTACAATCAAGGAT
* *
7944152 ACGAT-GAATCAGCA-TATAGCAACCCCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACT-TAGCAACCACTTT-ACAATCAAGGAT
** *
7944194 ACGGTGGAATCAGCACTTAGCAACCACTTTATGATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACTTTACAATCAAGGAT
* * *
7944236 ACGG-GGAATTAGCACATAGCAACCTCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACTTT-ACAATCAAGGAT
* * * * *
7944278 ACGGTAGAATCAGCACTTAGTAACCACCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACTTTACAATCAAGGAT
7944320 A
1 A
7944321 TGGGTTCACA
Statistics
Matches: 243, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
40 2 0.01
41 62 0.26
42 82 0.34
43 65 0.27
44 32 0.13
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
ACGGTGGAATCAGCACTTAGCAACCACTTTACAATCAAGGAT
Found at i:7944136 original size:84 final size:84
Alignment explanation
Indices: 7944027--7944320 Score: 480
Period size: 84 Copynumber: 3.5 Consensus size: 84
7944017 CAAAGGATCT
*
7944027 CGGTGGAATCAGCACTTAGAAACCACTTTATAATCAATGATACGGGGAATCAGCATATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGATACGGGGAATCAGCATATAGCAACC
7944092 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* * **
7944111 CGGTGGAATCAACACTTAGCAACCACATTATAATCAATGATACGATGAATCAGCATATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGATACGGGGAATCAGCATATAGCAACC
7944176 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* * *
7944195 CGGTGGAATCAGCACTTAGCAACCACTTTATGATCAATGATACGGGGAATTAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGATACGGGGAATCAGCATATAGCAACC
*
7944260 TCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* * *
7944279 CGGTAGAATCAGCACTTAGTAACCACCTTATAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGATA
7944321 TGGGTTCACA
Statistics
Matches: 193, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 193 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGATACGGGGAATCAGCATATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:7944391 original size:51 final size:51
Alignment explanation
Indices: 7944331--7944517 Score: 200
Period size: 51 Copynumber: 3.7 Consensus size: 51
7944321 TGGGTTCACA
* * *
7944331 TAGTAGCCTACACATAGTACGACACATGTGACCATCA-CTATCCGATACACG
1 TAGTAGCCTACACATAGTACTACACACGTGACCAT-AGCTATCCGGTACACG
* * * *
7944382 TAGTAGCCTACACATAGTACTACACACGTGATCGA-AGTTATCCGGTACGCA
1 TAGTAGCCTACACATAGTACTACACACGTGA-CCATAGCTATCCGGTACACG
* * * * * *
7944433 TAGTAGCCTAGACATAGTACTACACATGCGACC-TATCTTTCTGGTACACG
1 TAGTAGCCTACACATAGTACTACACACGTGACCATAGCTATCCGGTACACG
* *
7944483 TAGTAGCTTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTACACATAGTACTACACACGTGACCAT
7944518 CACTTTCACT
Statistics
Matches: 110, Mismatches: 22, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
50 40 0.36
51 68 0.62
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTACACATAGTACTACACACGTGACCATAGCTATCCGGTACACG
Found at i:7944507 original size:101 final size:101
Alignment explanation
Indices: 7944329--7944513 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
7944319 TATGGGTTCA
*
7944329 CATAGTAGCCTACACATAGTACGACACATGTGACCATCACTATCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTACACATAGTACGACACATGCGACCAT-ACTATCCGATACACGTAGTAGCCTACA
7944394 CATAGTACTACACACGTGATCGAAGTTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAGTTATCCGGTACG
* * * * * * *
7944431 CATAGTAGCCTAGACATAGTACTACACATGCGACC-TATCTTTCTGGTACACGTAGTAGCTTGCA
1 CATAGTAGCCTACACATAGTACGACACATGCGACCATA-CTATCCGATACACGTAGTAGCCTACA
7944495 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
7944514 CCATCACTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 1 0.01
101 41 0.55
102 32 0.43
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACGACACATGCGACCATACTATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAGTTATCCGGTACG
Found at i:7944536 original size:101 final size:101
Alignment explanation
Indices: 7944323--7944547 Score: 251
Period size: 101 Copynumber: 2.2 Consensus size: 101
7944313 CAATGATATG
*
7944323 GGTTCACATAGTAGCCTACACATAGTACGACACATGTGACCATCACTATCCGATACACGTAGTAG
1 GGTTCACATAGTAGCCTACACATAGTACGACACATGCGACCAT-ACTATCCGATACACGTAGTAG
* *
7944388 CCTACACATAGTACTACACACGTGATCGAAGTTATCC
65 CCTACACATAGTACTACACACGTGATCCAACTTATCC
* * * * * * *
7944425 GGTACGCATAGTAGCCTAGACATAGTACTACACATGCGACC-TATCTTTCTGGTACACGTAGTAG
1 GGTTCACATAGTAGCCTACACATAGTACGACACATGCGACCATA-CTATCCGATACACGTAGTAG
* *
7944489 CTTGCACATAGTACTACACACGTGA-CCATCACTT-TCAC
65 CCTACACATAGTACTACACACGTGATCCA--ACTTATC-C
* *
7944527 -TTTCACATAGTGGCCTACACA
1 GGTTCACATAGTAGCCTACACA
7944548 CAGTCCGTGC
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
100 3 0.03
101 59 0.58
102 40 0.39
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (101 bp):
GGTTCACATAGTAGCCTACACATAGTACGACACATGCGACCATACTATCCGATACACGTAGTAGC
CTACACATAGTACTACACACGTGATCCAACTTATCC
Found at i:7955103 original size:24 final size:24
Alignment explanation
Indices: 7955071--7955126 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
7955061 ATTTTGTTGT
7955071 CAAAATATTGATTGAACAAAATGA
1 CAAAATATTGATTGAACAAAATGA
7955095 CAAAATATTGATTGAACAAAATGA
1 CAAAATATTGATTGAACAAAATGA
*
7955119 CAAGATAT
1 CAAAATAT
7955127 CGTGTCGGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (24 bp):
CAAAATATTGATTGAACAAAATGA
Found at i:7955809 original size:44 final size:44
Alignment explanation
Indices: 7955741--7956448 Score: 518
Period size: 44 Copynumber: 15.8 Consensus size: 44
7955731 CATTATGGCA
* *
7955741 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * * * * **
7955785 AATCCTATCTCTCTAAAGTTGCAGTGGAGCGGATTGAAGTTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * * * *
7955829 AGTCTTATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAAA-TAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAACTA-CT
* * * *
7955874 AATCTTATTTCCTTAAAGTTGCAGTGG-G-ATGAATTGAAGTCATTA-TAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-G-ATT-AA---A--ACTACT
* * * *
7955923 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * **
7955968 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * * * * *
7956012 AGTCTTATCTCCTTGAAGTCGCAGTGGAGCAGACTGAAGA-TAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAACTA-CT
* * *
7956057 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* ** *** * * *
7956101 AATCCTATCTCTTTGAAGCCACAGTGGAGCAGACTGAAGA-TAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAACTA-CT
*
7956146 AATCTTATCT-CCTAGAAGTTGCAGTGGAGCAGATTAAAGCTACT
1 AATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAAACTACT
* * **
7956190 AAT-TCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTTACT
1 AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * * * * *
7956234 AGTCTTATCTCCCTTAAGTCGTAGTGGAGCAGATTGAAGA-TAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAACTACT
* * * *
7956278 AAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTAAAGCTACT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * * * *
7956323 AATCCTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGA-TAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAACTA-CT
* * * *
7956368 AATATTATCTCCCTGAAGTTGCAATGGAACATATTAAAACTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
* * *
7956412 AATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
7956449 GATGATGAAT
Statistics
Matches: 515, Mismatches: 119, Indels: 60
0.74 0.17 0.09
Matches are distributed among these distances:
43 2 0.00
44 306 0.59
45 170 0.33
46 1 0.00
48 1 0.00
49 2 0.00
50 30 0.06
51 2 0.00
52 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACT
Found at i:7956012 original size:183 final size:183
Alignment explanation
Indices: 7955704--7956083 Score: 598
Period size: 183 Copynumber: 2.1 Consensus size: 183
7955694 CCTATACAGC
* * *
7955704 TAAAGTTGTAGTGGGATGGATTAAAGTCATTATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGA
1 TAAAGTTGCAGTGGGATGAATTAAAGTCATTATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGA
* * *
7955769 GCAGATTAAAACTAATAATCCTATCTCTCTAAAGTTGCAGTGGAGCGGATTGAAGTTACTAGTCT
66 GCAGATTAAAACCAATAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAGTTACTAGTCT
* * *
7955834 TATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAAATAGCGAATCTTATTTCCT
131 TATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAAATAGCAAATCTTATCTCCT
* ** *
7955887 TAAAGTTGCAGTGGGATGAATTGAAGTCATTATAGTGAATCTTATCTCCCTGAAGTTGCAGTGGA
1 TAAAGTTGCAGTGGGATGAATTAAAGTCATTATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGA
* * *
7955952 GTAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACTAGTCT
66 GCAGATTAAAACCAATAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAGTTACTAGTCT
* *
7956017 TATCTCCTTGAAGTCGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCT
131 TATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAAATAGCAAATCTTATCTCCT
7956070 TAAAGTTGCAGTGG
1 TAAAGTTGCAGTGG
7956084 AGCAGATTAA
Statistics
Matches: 179, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
183 179 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (183 bp):
TAAAGTTGCAGTGGGATGAATTAAAGTCATTATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGA
GCAGATTAAAACCAATAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAGTTACTAGTCT
TATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAAATAGCAAATCTTATCTCCT
Found at i:7956091 original size:133 final size:132
Alignment explanation
Indices: 7955741--7956448 Score: 632
Period size: 133 Copynumber: 5.3 Consensus size: 132
7955731 CATTATGGCA
* * * * * * *
7955741 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACTAATAATCCTATCTCTCTAAAGTTG
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCTTATCTCCCTGAAGTTG
* * * * * * * *
7955806 CAGTGGAGCGGATTGAAGTTACTAGTCTTATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAAATA
66 CAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGATA
*
7955871 GCG
131 -CT
* * * *
7955874 AATCTTATTTCCTTAAAGTTGCAGTGG-G-ATGAATTGAAGTCATTATAGTGAATCTTATCTCCC
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCA-G-ATTAAAG-C----TACT-AATCTTATCTCCC
* * * * *
7955937 TGAAGTTGCAGTGGAGTAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
58 TGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTCGCAGTGGAGCAGAT
* *
7956002 TAAAGTTACT
123 TGAAGATACT
* * * * * * * *
7956012 AGTCTTATCTCCTTGAAGTCGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCTTAAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CTAATCTTATCTCCCTGAAGTT
** * * *
7956077 GCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCTTTGAAGCCACAGTGGAGCAGACTGAAGAT
65 GCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGAT
*
7956142 AGCA
130 A-CT
*
7956146 AATCTTATCTCCTAGAAGTTGCAGTGGAGCAGATTAAAGCTACTAAT-TCTATCTCCCTGAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCT-TATCTCCCTGAAGTT
* * * * * * *
7956210 ACAGTGGAGCGGATTAAAGTTACTAGTCTTATCTCCCTTAAGTCGTAGTGGAGCAGATTGAAGAT
65 GCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGAT
*
7956275 AGT
130 ACT
* * * *
7956278 AAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTC
1 -AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCTTATCTCCCTGAAGTT
* * * * ** * * * * *
7956343 GCAGTGGAGCAGACTGAAGATAGCAAATATTATCTCCCTGAAGTTGCAATGGAACATATT-AAAA
65 GCAGTGGAGCAGATTAAAGCTA-CTAATCCTATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGA
7956407 CTACT
129 -TACT
* * * *
7956412 AATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAA
7956449 GATGATGAAT
Statistics
Matches: 461, Mismatches: 97, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
131 1 0.00
132 3 0.01
133 284 0.62
134 69 0.15
138 33 0.07
139 70 0.15
140 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (132 bp):
AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTCGCAGTGGAGCAGATTGAAGATA
CT
Found at i:7956200 original size:222 final size:222
Alignment explanation
Indices: 7955924--7956448 Score: 829
Period size: 222 Copynumber: 2.4 Consensus size: 222
7955914 CATTATAGTG
* * *
7955924 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTTG
7955989 CAGTGGAGCGGATTAAAGTTACTAGTCTTATCT-CCTTGAAGTCGCAGTGGAGCAGACTGAAGAT
66 CAGTGGAGCGGATTAAAGTTACTAGTCTTATCTCCCTT-AAGTCGCAGTGGAGCAGACTGAAGAT
**
7956053 AGCAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCTTTGAA
130 AGCAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAA
7956118 GCCACAGTGGAGCAGACTGAAGATAGCA
195 GCCACAGTGGAGCAGACTGAAGATAGCA
*
7956146 AATCTTATCT-CCTAGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATTCTATCTCCCTGAAGTT
1 AATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTT
* * *
7956210 ACAGTGGAGCGGATTAAAGTTACTAGTCTTATCTCCCTTAAGTCGTAGTGGAGCAGATTGAAGAT
65 GCAGTGGAGCGGATTAAAGTTACTAGTCTTATCTCCCTTAAGTCGCAGTGGAGCAGACTGAAGAT
* ** *
7956275 AGTAAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAA
130 AGCAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAA
* *
7956340 GTCGCAGTGGAGCAGACTGAAGATAGCA
195 GCCACAGTGGAGCAGACTGAAGATAGCA
* * * * * *
7956368 AATATTATCTCCCTGAAGTTGCAATGGAACATATTAAAACTACTAATCCTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTTG
7956433 CAGTGGAGCGGATTAA
66 CAGTGGAGCGGATTAA
7956449 GATGATGAAT
Statistics
Matches: 277, Mismatches: 23, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
221 3 0.01
222 267 0.96
223 7 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (222 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTTG
CAGTGGAGCGGATTAAAGTTACTAGTCTTATCTCCCTTAAGTCGCAGTGGAGCAGACTGAAGATA
GCAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAG
CCACAGTGGAGCAGACTGAAGATAGCA
Found at i:7956288 original size:89 final size:89
Alignment explanation
Indices: 7955740--7956448 Score: 583
Period size: 89 Copynumber: 7.9 Consensus size: 89
7955730 TCATTATGGC
* * * * *
7955740 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACTAATAATCCTATCTCTCTAAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTT
* * *
7955805 GCAGTGGAGCGGATTGAAGTTACT
66 GCAGTGGAGCAGATTAAAGATACT
* * * * * * * * * *
7955829 -AGTCTTATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAA-ATAGCGAATCTTATTTCCTTAAAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAGCTA-CTAATCCTATCTCCCTGAAG
*
7955892 TTGCAGTGG-G-ATGAATTGAAGTCATTA-T
64 TTGCAGTGGAGCA-G-ATTAAAG--A-TACT
* * *
7955920 AGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAATAATCCTATCTCCCTGAA
1 A---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAA
* *
7955985 GTTGCAGTGGAGCGGATTAAAGTTACT
63 GTTGCAGTGGAGCAGATTAAAGATACT
* * * * * * * * * *
7956012 -AGTCTTATCTCCTTGAAGTCGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCTTAAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CTAATCCTATCTCCCTGAAGT
*
7956076 TGCAGTGGAGCAGATTAAAGCTACT
65 TGCAGTGGAGCAGATTAAAGATACT
* ** *** * * * * *
7956101 -AATCCTATCTCTTTGAAGCCACAGTGGAGCAGACTGAAGATAGCAAATCTTATCT-CCTAGAAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CTAATCCTATCTCCCT-GAAG
*
7956164 TTGCAGTGGAGCAGATTAAAGCTACT
64 TTGCAGTGGAGCAGATTAAAGATACT
* * * * * * * *
7956190 AATTC-TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTTACTAGTCTTATCTCCCTTAAGTC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTT
* * *
7956254 GTAGTGGAGCAGATTGAAGATAGT
66 GCAGTGGAGCAGATTAAAGATACT
* * * *
7956278 AAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTT
* *
7956343 GCAGTGGAGCAGACTGAAGATAGC-
66 GCAGTGGAGCAGATTAAAGATA-CT
* * * * * *
7956367 AAATATTATCTCCCTGAAGTTGCAATGGAACATATTAAAACTACTAATCCTATCTCCCTAAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTT
*
7956432 GCAGTGGAGCGGATTAA
66 GCAGTGGAGCAGATTAA
7956449 GATGATGAAT
Statistics
Matches: 506, Mismatches: 93, Indels: 42
0.79 0.15 0.07
Matches are distributed among these distances:
88 107 0.21
89 323 0.64
90 3 0.01
91 3 0.01
92 3 0.01
94 33 0.07
95 34 0.07
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (89 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACTAATCCTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGATACT
Found at i:7957936 original size:8 final size:8
Alignment explanation
Indices: 7957910--7957987 Score: 50
Period size: 8 Copynumber: 9.2 Consensus size: 8
7957900 TTAGTCCCCT
7957910 TTTTATTA
1 TTTTATTA
*
7957918 TTTTTTCTA
1 TTTTAT-TA
7957927 TTTTATTA
1 TTTTATTA
**
7957935 TTAAATTCA
1 TTTTATT-A
*
7957944 -TTAATGTAA
1 TTTTAT-T-A
*
7957953 TATTATTA
1 TTTTATTA
*
7957961 TTACTATTA
1 TT-TTATTA
7957970 TTTTATTA
1 TTTTATTA
7957978 TTTTATTA
1 TTTTATTA
7957986 TT
1 TT
7957988 AAATTCATTA
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
8 33 0.61
9 18 0.33
10 3 0.06
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (8 bp):
TTTTATTA
Found at i:7957986 original size:51 final size:52
Alignment explanation
Indices: 7957913--7958010 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 52
7957903 GTCCCCTTTT
*
7957913 TATTATTTTTTCTATTTTATTATTAAATTCATTAATGTAATATTATTATTAC
1 TATTATTTTATCTATTTTATTATTAAATTCATTAATGTAATATTATTATTAC
7957965 TATTATTTTAT-TATTTTATTATTAAATTCATTAATGTAATATTATT
1 TATTATTTTATCTATTTTATTATTAAATTCATTAATGTAATATTATT
7958011 GCTTTTACTA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 35 0.78
52 10 0.22
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (52 bp):
TATTATTTTATCTATTTTATTATTAAATTCATTAATGTAATATTATTATTAC
Found at i:7958102 original size:3 final size:3
Alignment explanation
Indices: 7958077--7958133 Score: 80
Period size: 3 Copynumber: 18.3 Consensus size: 3
7958067 TAACGTACTT
7958077 TTA TT- TTA TTTA TTA TCTCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA T-T-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
7958124 TTA TTA TTA T
1 TTA TTA TTA T
7958134 CATAAACCTA
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.04
3 41 0.82
4 5 0.10
5 2 0.04
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7967827 original size:41 final size:41
Alignment explanation
Indices: 7967782--7967896 Score: 185
Period size: 41 Copynumber: 2.8 Consensus size: 41
7967772 CTTATCGTCA
* *
7967782 GTGAAATGTTTCAGACTTTATGTCTAGCAGGGTTGATGCCG
1 GTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCG
7967823 GTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCG
1 GTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCG
* * *
7967864 ATGAAATATCTCAGACTTTACGTCTAGCAGGCT
1 GTGAAATGTTTCAGACTTTACGTCTAGCAGGCT
7967897 AATTACCAGT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
GTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCG
Found at i:7969209 original size:37 final size:37
Alignment explanation
Indices: 7969147--7969236 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
7969137 AACTATAAAG
7969147 GCCGAATGC--ACATAT-T-CACTTATACCCACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
7969180 GCCGAATGCATACATATATACACTTATACCCACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
*
7969217 GCCGAATGCATACAAATATA
1 GCCGAATGCATACATATATA
7969237 TATCTACCTA
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
33 9 0.17
35 6 0.12
36 1 0.02
37 36 0.69
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.26
Consensus pattern (37 bp):
GCCGAATGCATACATATATACACTTATACCCACCTAT
Found at i:7969546 original size:41 final size:41
Alignment explanation
Indices: 7969449--7969633 Score: 318
Period size: 41 Copynumber: 4.5 Consensus size: 41
7969439 AATTCATCAT
*
7969449 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTAT-GCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
* * *
7969489 ATTCAGATCACTGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
7969530 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
*
7969571 ATTCAGATCACTGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
7969612 ATTCAGATCACCGGCACTTAGC
1 ATTCAGATCACCGGCACTTAGC
7969634 TTGATTCAAT
Statistics
Matches: 135, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 32 0.24
41 103 0.76
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
Found at i:7969730 original size:13 final size:13
Alignment explanation
Indices: 7969712--7969739 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7969702 TGAGTCTATC
7969712 ATATACATATATA
1 ATATACATATATA
7969725 ATATACATATATA
1 ATATACATATATA
7969738 AT
1 AT
7969740 TACGTACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (13 bp):
ATATACATATATA
Found at i:7969916 original size:17 final size:18
Alignment explanation
Indices: 7969873--7969918 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
7969863 TTGTTCGATC
*
7969873 CACATATATATATGTTACA
1 CACAT-TATATATATTACA
*
7969892 CACA-TATATATATT-CT
1 CACATTATATATATTACA
7969908 CACATTATATA
1 CACATTATATA
7969919 AACACAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 5 0.21
17 15 0.62
19 4 0.17
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (18 bp):
CACATTATATATATTACA
Found at i:7973188 original size:22 final size:23
Alignment explanation
Indices: 7973150--7973198 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
7973140 AATTTCATGA
7973150 ATATATATCATTAGAT-ATAAGC
1 ATATATATCATTAGATAATAAGC
* *
7973172 ATATAT-TCAATTTGATAATAATC
1 ATATATATC-ATTAGATAATAAGC
7973195 ATAT
1 ATAT
7973199 TTTTCTCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 12 0.52
23 9 0.39
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (23 bp):
ATATATATCATTAGATAATAAGC
Found at i:7973239 original size:16 final size:17
Alignment explanation
Indices: 7973206--7973242 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7973196 TATTTTTCTC
*
7973206 AATACATATATATTCAT
1 AATAAATATATATTCAT
7973223 AATAAATATAT-TTCAT
1 AATAAATATATATTCAT
7973239 AATA
1 AATA
7973243 TACAAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAAATATATATTCAT
Found at i:7973874 original size:16 final size:16
Alignment explanation
Indices: 7973849--7973883 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7973839 CTAAATACTG
* *
7973849 AAATTTCAAAAATATA
1 AAATTACAAAAAAATA
7973865 AAATTACAAAAAAATA
1 AAATTACAAAAAAATA
7973881 AAA
1 AAA
7973884 ATTAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATTACAAAAAAATA
Found at i:7974838 original size:27 final size:25
Alignment explanation
Indices: 7974791--7974855 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 25
7974781 TAAATATTTT
*
7974791 TAATAATAATAAAAAATGTTTC-GA
1 TAATAATAATAAAAAATGTTTCAAA
*
7974815 TAATAATAATAAAATTATTAGTTTCAAA
1 TAATAATAATAAAA--AAT-GTTTCAAA
*
7974843 TATTAATAATAAA
1 TAATAATAATAAA
7974856 TAATTTTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.41
26 2 0.06
27 5 0.15
28 13 0.38
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (25 bp):
TAATAATAATAAAAAATGTTTCAAA
Found at i:7977913 original size:21 final size:21
Alignment explanation
Indices: 7977889--7977932 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7977879 GACTGAGCAG
7977889 TGCTTCTGAACTGGAGCTCAT
1 TGCTTCTGAACTGGAGCTCAT
7977910 TGCTTCTGAACTGGAGCTCAT
1 TGCTTCTGAACTGGAGCTCAT
7977931 TG
1 TG
7977933 TCCCAGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (21 bp):
TGCTTCTGAACTGGAGCTCAT
Found at i:7986766 original size:33 final size:33
Alignment explanation
Indices: 7986724--7986792 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
7986714 AGGAGCTGTC
**
7986724 GGTTCATATGG-GAGACTAGGTGCCATGACTGGT
1 GGTTCATATGGAG-GACTAGGAACCATGACTGGT
*
7986757 GGTTCATATGGAGGACTAGGAACCTTGACTGGT
1 GGTTCATATGGAGGACTAGGAACCATGACTGGT
7986790 GGT
1 GGT
7986793 GGAGCTGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.22, C:0.14, G:0.36, T:0.28
Consensus pattern (33 bp):
GGTTCATATGGAGGACTAGGAACCATGACTGGT
Found at i:7987830 original size:18 final size:19
Alignment explanation
Indices: 7987799--7987848 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
7987789 TAAAAAATAA
*
7987799 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AA-TTTTAAAAATT
7987819 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAATT
7987838 ATTTTG-ATTTT
1 ATTTTGAATTTT
7987849 TTTTTGTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 13 0.46
19 9 0.32
20 6 0.21
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:7987830 original size:19 final size:20
Alignment explanation
Indices: 7987799--7987849 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
7987789 TAAAAAATAA
*
7987799 ATTTTGAAATTTTTATAAA-T
1 ATTTTG-AATTTTTAAAAATT
7987819 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
7987838 ATTTTG-ATTTTT
1 ATTTTGAATTTTT
7987850 TTTTGTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.32
19 13 0.46
20 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:7990676 original size:16 final size:16
Alignment explanation
Indices: 7990655--7990688 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7990645 AATATGATTG
*
7990655 TGTGTATTGTGATATA
1 TGTGTAATGTGATATA
*
7990671 TGTGTAATGTGATGTA
1 TGTGTAATGTGATATA
7990687 TG
1 TG
7990689 CCTAAACGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (16 bp):
TGTGTAATGTGATATA
Found at i:7991518 original size:20 final size:20
Alignment explanation
Indices: 7991493--7991535 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
7991483 TAAATTGTGC
7991493 TGGGAGTCAGAATAGAGATT
1 TGGGAGTCAGAATAGAGATT
7991513 TGGGAGTCAGAATAGAGATT
1 TGGGAGTCAGAATAGAGATT
7991533 TGG
1 TGG
7991536 TATCGATACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.37, T:0.26
Consensus pattern (20 bp):
TGGGAGTCAGAATAGAGATT
Found at i:7992744 original size:17 final size:18
Alignment explanation
Indices: 7992724--7992758 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
7992714 CTAATTGCTA
7992724 TAAGTGTAT-AATATATT
1 TAAGTGTATAAATATATT
7992741 TAAGTGTATAAATATATT
1 TAAGTGTATAAATATATT
7992759 GACTTGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (18 bp):
TAAGTGTATAAATATATT
Found at i:7993849 original size:18 final size:18
Alignment explanation
Indices: 7993822--7993864 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
7993812 TCATCATAAC
*
7993822 TATCATCTCTATAATCCA
1 TATCAACTCTATAATCCA
7993840 TATCAACTCTATAATCCA
1 TATCAACTCTATAATCCA
7993858 TATCAAC
1 TATCAAC
7993865 ATCCTCATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (18 bp):
TATCAACTCTATAATCCA
Found at i:7997010 original size:59 final size:59
Alignment explanation
Indices: 7996918--7997035 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
7996908 ACAAAAATGC
7996918 AAGCAAGTAATCAAAATACTATGATCAAACATGTCAACTAAATAAAACAAGTTATGTGT
1 AAGCAAGTAATCAAAATACTATGATCAAACATGTCAACTAAATAAAACAAGTTATGTGT
7996977 AAGCAAGTAATCAAAATACTATGATCAAACATGTCAACTAAATAAAACAAGTTATGTGT
1 AAGCAAGTAATCAAAATACTATGATCAAACATGTCAACTAAATAAAACAAGTTATGTGT
7997036 TTTACGCAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (59 bp):
AAGCAAGTAATCAAAATACTATGATCAAACATGTCAACTAAATAAAACAAGTTATGTGT
Found at i:8005720 original size:37 final size:37
Alignment explanation
Indices: 8005670--8005748 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
8005660 TTATTACGAA
* * *
8005670 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
8005707 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
8005744 GTCTT
1 GTCTT
8005749 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:8006041 original size:49 final size:47
Alignment explanation
Indices: 8005867--8006196 Score: 525
Period size: 47 Copynumber: 6.9 Consensus size: 47
8005857 CCCTTCGGGA
* * * * * * *
8005867 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8005914 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8005961 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8006008 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8006057 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8006106 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8006153 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
8006197 CGCCATACTA
Statistics
Matches: 267, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 173 0.65
49 94 0.35
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8010501 original size:27 final size:27
Alignment explanation
Indices: 8010461--8010574 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 27
8010451 ACATATAGTC
* *
8010461 ATTTTATAACATAGGGGTATAATCGTT
1 ATTTTATAACATAGGGGCATAACCGTT
* * *
8010488 TTTTTATAATATAGGGGCATAACCATT
1 ATTTTATAACATAGGGGCATAACCGTT
*
8010515 ATTTTATAACATAAGGGCATAACCGTT
1 ATTTTATAACATAGGGGCATAACCGTT
* **
8010542 ATTTTATTACATAGGGGCATAATAGTT
1 ATTTTATAACATAGGGGCATAACCGTT
8010569 ATTTTA
1 ATTTTA
8010575 CCATATGAAG
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTATAACATAGGGGCATAACCGTT
Found at i:8011685 original size:17 final size:17
Alignment explanation
Indices: 8011663--8011697 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8011653 AAACAAAACT
8011663 AAAATGAAG-AGTATACC
1 AAAATG-AGCAGTATACC
8011680 AAAATGAGCAGTATACC
1 AAAATGAGCAGTATACC
8011697 A
1 A
8011698 CTCTGGCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (17 bp):
AAAATGAGCAGTATACC
Found at i:8016493 original size:26 final size:23
Alignment explanation
Indices: 8016448--8016498 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
8016438 CAATTAGTAT
8016448 AAATATATTTTTTGATATTATAAA
1 AAATATATTTTTTGATATTA-AAA
8016472 AAATATATTATTTAATGA-ATTAAAA
1 AAATATATT-TTT--TGATATTAAAA
8016497 AA
1 AA
8016499 TAAATACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 9 0.38
25 8 0.33
26 4 0.17
27 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (23 bp):
AAATATATTTTTTGATATTAAAA
Found at i:8021561 original size:18 final size:17
Alignment explanation
Indices: 8021534--8021567 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8021524 AAAGAATCAG
*
8021534 TATTTCAACATAATAAAT
1 TATTTAAACAT-ATAAAT
8021552 TATTTAAACATATAAA
1 TATTTAAACATATAAA
8021568 CAACCGACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (17 bp):
TATTTAAACATATAAAT
Found at i:8023317 original size:20 final size:20
Alignment explanation
Indices: 8023292--8023333 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8023282 ATTCATTGAC
*
8023292 AGGTTAATTTGATAATTAGG
1 AGGTTAATTTAATAATTAGG
*
8023312 AGGTTAATTTAATGATTAGG
1 AGGTTAATTTAATAATTAGG
8023332 AG
1 AG
8023334 TTTATGCTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (20 bp):
AGGTTAATTTAATAATTAGG
Found at i:8023672 original size:22 final size:22
Alignment explanation
Indices: 8023647--8023697 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
8023637 TTTAAAAAGT
8023647 TTAAAAATTGTTCTAAATTACA-
1 TTAAAAATTGTTCTAAATTA-AG
* *
8023669 TTAAAAATTGTTTTAAGTTAAG
1 TTAAAAATTGTTCTAAATTAAG
8023691 TTAAAAA
1 TTAAAAA
8023698 AAGTTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (22 bp):
TTAAAAATTGTTCTAAATTAAG
Found at i:8023746 original size:20 final size:20
Alignment explanation
Indices: 8023723--8023769 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
8023713 TACCGAATTG
*
8023723 AATTTAA-TTATTTTATACAA
1 AATTTAATTTAATTTATA-AA
*
8023743 AATTGAATTTAATTTATAAA
1 AATTTAATTTAATTTATAAA
8023763 AAGTTTA
1 AA-TTTA
8023770 TTAAAACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (20 bp):
AATTTAATTTAATTTATAAA
Found at i:8030464 original size:20 final size:18
Alignment explanation
Indices: 8030417--8030465 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
8030407 CAAGATAAAC
8030417 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
8030434 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
8030454 ATTAAATTAATA
1 ATTAAATTAATA
8030466 AAAGACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:8036164 original size:14 final size:15
Alignment explanation
Indices: 8036128--8036169 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
8036118 ATAATTCAAT
*
8036128 TTCAACACTTATCAAA
1 TTCAACACTTA-AAAA
*
8036144 TTTAACA-TTAAAAA
1 TTCAACACTTAAAAA
8036158 TTCAACACTTAA
1 TTCAACACTTAA
8036170 TTTTTAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 9 0.41
15 7 0.32
16 6 0.27
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (15 bp):
TTCAACACTTAAAAA
Found at i:8050092 original size:28 final size:29
Alignment explanation
Indices: 8050034--8050096 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
8050024 CCTGCCCAAA
*
8050034 TATATTATGTTATAAAAATATTATATTAAT
1 TATA-TATGTTATAAAAATATTATAATAAT
*
8050064 TATATATGTTA-AATAATAATTA-AATAAT
1 TATATATGTTATAAAAAT-ATTATAATAAT
8050092 TATAT
1 TATAT
8050097 TTATATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 15 0.50
29 11 0.37
30 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (29 bp):
TATATATGTTATAAAAATATTATAATAAT
Found at i:8052674 original size:30 final size:30
Alignment explanation
Indices: 8052581--8052675 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
8052571 GCATTTGTTG
8052581 AATTTTTTAGAA-TCAGAATT-AAATTA-AA
1 AATTTTTTAGAATTC-GAATTAAAATTATAA
* * * *
8052609 AATTTTATA-AATTTTGAGAGTTAAATTTATTA
1 AATTTTTTAGAA-TTCGA-A-TTAAAATTATAA
*
8052641 AATTTTTTAGAATTCGAATTAAAATGATAA
1 AATTTTTTAGAATTCGAATTAAAATTATAA
8052671 AATTT
1 AATTT
8052676 GTAAACATTG
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
27 2 0.04
28 10 0.20
29 2 0.04
30 16 0.31
31 6 0.12
32 13 0.25
33 2 0.04
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.44
Consensus pattern (30 bp):
AATTTTTTAGAATTCGAATTAAAATTATAA
Found at i:8052703 original size:61 final size:60
Alignment explanation
Indices: 8052581--8052710 Score: 147
Period size: 61 Copynumber: 2.1 Consensus size: 60
8052571 GCATTTGTTG
* ** *
8052581 AATTTTTTAGAATCAGAATTAAATTAAAAATTTTATAAATTTTGAGAGTTAAATTTATTA
1 AATTTTTTAGAATCAGAATTAAATGAAAAATTTTATAAACATTGAGAGTGAAATTTATTA
* * *
8052641 AATTTTTTAGAATTC-GAATTAAAATGATAAAA-TTTGTAAACATTGAGGGTGAAATTTCTTA
1 AATTTTTTAGAA-TCAGAATT-AAATGA-AAAATTTTATAAACATTGAGAGTGAAATTTATTA
*
8052702 AATATTTTA
1 AATTTTTTA
8052711 TATTTAGGGT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
60 17 0.29
61 38 0.64
62 4 0.07
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (60 bp):
AATTTTTTAGAATCAGAATTAAATGAAAAATTTTATAAACATTGAGAGTGAAATTTATTA
Found at i:8052990 original size:21 final size:21
Alignment explanation
Indices: 8052961--8053001 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8052951 CAAAAATATA
*
8052961 TTATTTTAT-ATTAATATTTAT
1 TTATCTTATAATTAA-ATTTAT
8052982 TTATCTTATAATTAAATTTA
1 TTATCTTATAATTAAATTTA
8053002 AAAGAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATCTTATAATTAAATTTAT
Found at i:8053416 original size:22 final size:22
Alignment explanation
Indices: 8053366--8053418 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
8053356 AAATTTTCAA
8053366 TATTTAATATTTTAAATGTGTT
1 TATTTAATATTTTAAATGTGTT
* * *
8053388 TA-ATAATCATTTT-AATTTTTT
1 TATTTAAT-ATTTTAAATGTGTT
8053409 TATTTAATAT
1 TATTTAATAT
8053419 AAAAATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (22 bp):
TATTTAATATTTTAAATGTGTT
Found at i:8058286 original size:73 final size:77
Alignment explanation
Indices: 8058138--8058289 Score: 215
Period size: 79 Copynumber: 2.0 Consensus size: 77
8058128 TATGTGATGT
* *
8058138 ATTATTCTTATTTAAGTTGTGGAAATTTGTGTTTTTTTCCCCTTTTGTTTCTTTTATTTCTAATT
1 ATTATTCCTATTTAAGTTGTGGAAACTTGTGTTTTTTT--CCTTTTGTTTCTTTTATTTCTAATT
8058203 GATGGAGAGAATAA
64 GATGGAGAGAATAA
*
8058217 ATTATTCCTATTTAAGTTGTGGAAACTTGT-TCTTTTTT-C-TTT-TTT-TTTTCTTTCTAATTG
1 ATTATTCCTATTTAAGTTGTGGAAACTTGTGT-TTTTTTCCTTTTGTTTCTTTTATTTCTAATTG
8058277 ATGGAGAGAATAA
65 ATGGAGAGAATAA
8058290 TTTGGGAGGT
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
73 27 0.39
74 3 0.04
75 3 0.04
76 1 0.01
78 1 0.01
79 34 0.49
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (77 bp):
ATTATTCCTATTTAAGTTGTGGAAACTTGTGTTTTTTTCCTTTTGTTTCTTTTATTTCTAATTGA
TGGAGAGAATAA
Found at i:8060014 original size:34 final size:34
Alignment explanation
Indices: 8059975--8060042 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
8059965 ACAGATAATC
* *
8059975 TCAGTTTAGGCCTAAGCCCTTTTCGGTAACAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTAACAGTA
* * *
8060009 TCAGTTTAGGCTTAAGTCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTAACAGTA
8060043 AGCATTAGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (34 bp):
TCAGTTTAGGCCTAAGCCCATTTCAGTAACAGTA
Found at i:8065065 original size:23 final size:23
Alignment explanation
Indices: 8065035--8065132 Score: 85
Period size: 23 Copynumber: 4.3 Consensus size: 23
8065025 CAAACTACAA
8065035 AGAATATTCACTATTCATGCCAG
1 AGAATATTCACTATTCATGCCAG
*
8065058 AGAATATTTACTATTCATGCCAG
1 AGAATATTCACTATTCATGCCAG
* * * **
8065081 AAAATCTT-ACTGTTTTTGCCAG
1 AGAATATTCACTATTCATGCCAG
* * *
8065103 AG-AT-TTCTACTGTTCACGCTAG
1 AGAATATTC-ACTATTCATGCCAG
8065125 AGAATATT
1 AGAATATT
8065133 TCCTGTTCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
20 2 0.03
21 2 0.03
22 24 0.40
23 30 0.50
24 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (23 bp):
AGAATATTCACTATTCATGCCAG
Found at i:8068699 original size:16 final size:16
Alignment explanation
Indices: 8068678--8068708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8068668 TGAATTATTG
8068678 ATTACAACTCAATTCT
1 ATTACAACTCAATTCT
*
8068694 ATTACAACTCTATTC
1 ATTACAACTCAATTC
8068709 CATGATAGCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTACAACTCAATTCT
Found at i:8074382 original size:27 final size:28
Alignment explanation
Indices: 8074352--8074428 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 28
8074342 TTGTCATGGC
*
8074352 GGACTACCCCATAATTACTGTCTCGA-T
1 GGACTACCCCATGATTACTGTCTCGAGT
* * * *
8074379 GGACTACCCTATGTTTACTAT-ACGAGT
1 GGACTACCCCATGATTACTGTCTCGAGT
*
8074406 GGACTACCCCATGATTATTGTCT
1 GGACTACCCCATGATTACTGTCT
8074429 TGGTAGACTC
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (28 bp):
GGACTACCCCATGATTACTGTCTCGAGT
Found at i:8074571 original size:27 final size:27
Alignment explanation
Indices: 8074508--8074572 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
8074498 TTTTATTATC
*
8074508 CCAGTGGACTACCTCGTGTTTATTGTA
1 CCAGTGGACTACCTCGTGTTTACTGTA
** *
8074535 CTGGTGGACTACCTCGTGTTTACTGTT
1 CCAGTGGACTACCTCGTGTTTACTGTA
*
8074562 CCAGTAGACTA
1 CCAGTGGACTA
8074573 TATTGGTTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CCAGTGGACTACCTCGTGTTTACTGTA
Found at i:8075384 original size:22 final size:21
Alignment explanation
Indices: 8075359--8075403 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8075349 ATCATGAATT
*
8075359 AAGCTCATAATTTTTCAGCTTA
1 AAGC-CATAATTTTCCAGCTTA
* *
8075381 AAGCCTTGATTTTCCAGCTTA
1 AAGCCATAATTTTCCAGCTTA
8075402 AA
1 AA
8075404 ACCCCAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (21 bp):
AAGCCATAATTTTCCAGCTTA
Found at i:8075740 original size:17 final size:17
Alignment explanation
Indices: 8075710--8075744 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8075700 AAGTATAAAA
*
8075710 ATTAACTGAGTTAAAGT
1 ATTAACTGAATTAAAGT
*
8075727 ATTAATTGAATTAAAGT
1 ATTAACTGAATTAAAGT
8075744 A
1 A
8075745 ATGAATTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
ATTAACTGAATTAAAGT
Found at i:8083912 original size:13 final size:13
Alignment explanation
Indices: 8083894--8083925 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8083884 TTTCCAGCAA
8083894 TTATGAATTTATT
1 TTATGAATTTATT
8083907 TTATGAATTTATT
1 TTATGAATTTATT
*
8083920 TGATGA
1 TTATGA
8083926 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8084133 original size:50 final size:50
Alignment explanation
Indices: 8084020--8084261 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
8084010 ATTTGGGTAA
* * *
8084020 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
8084076 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8084126 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8084176 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
8084226 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
8084262 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:8084209 original size:100 final size:103
Alignment explanation
Indices: 8084020--8084269 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
8084010 ATTTGGGTAA
8084020 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
8084085 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
8084126 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
8084188 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
8084226 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8084270 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:8087093 original size:20 final size:21
Alignment explanation
Indices: 8087068--8087113 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8087058 CTGTCGTGAT
8087068 TTTTAGTTTTA-GACTTTTAG
1 TTTTAGTTTTAGGACTTTTAG
* *
8087088 TTTTAGTTTTAGGATTTTTAT
1 TTTTAGTTTTAGGACTTTTAG
8087109 TTTTA
1 TTTTA
8087114 TTTATTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.20, C:0.02, G:0.13, T:0.65
Consensus pattern (21 bp):
TTTTAGTTTTAGGACTTTTAG
Found at i:8087643 original size:23 final size:24
Alignment explanation
Indices: 8087597--8087645 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
8087587 ATGCCCAGGG
* *
8087597 CCCAACTAACCCTCAGCCCAAAAC
1 CCCAACTAAACCTCAACCCAAAAC
8087621 CCCAACTAAACCT-AACCCAAAAC
1 CCCAACTAAACCTCAACCCAAAAC
8087644 CC
1 CC
8087646 AAATTACACC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.41, C:0.49, G:0.02, T:0.08
Consensus pattern (24 bp):
CCCAACTAAACCTCAACCCAAAAC
Found at i:8089094 original size:18 final size:20
Alignment explanation
Indices: 8089061--8089098 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
8089051 ATATAAACAC
8089061 TTTCATATATTTTATATATA
1 TTTCATATATTTTATATATA
8089081 TTTCATA-A-TTTATATATA
1 TTTCATATATTTTATATATA
8089099 CATATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTCATATATTTTATATATA
Found at i:8099940 original size:20 final size:20
Alignment explanation
Indices: 8099911--8099949 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8099901 ATTTTGCATG
*
8099911 CATAGTAAAATTGTGACAAT
1 CATAGAAAAATTGTGACAAT
8099931 CATAGAAAAATTGTGACAA
1 CATAGAAAAATTGTGACAA
8099950 ACAAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.26
Consensus pattern (20 bp):
CATAGAAAAATTGTGACAAT
Found at i:8100000 original size:26 final size:26
Alignment explanation
Indices: 8099971--8100024 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
8099961 CTCATTGATT
8099971 GTCTAAGTTCAAACTGAAGATAAGTG
1 GTCTAAGTTCAAACTGAAGATAAGTG
8099997 GTCTAAGTTCAAACTGAAGATAAGTG
1 GTCTAAGTTCAAACTGAAGATAAGTG
8100023 GT
1 GT
8100025 ATTGTAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (26 bp):
GTCTAAGTTCAAACTGAAGATAAGTG
Found at i:8102079 original size:22 final size:22
Alignment explanation
Indices: 8102053--8102096 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8102043 ATCCTAGACG
8102053 AATCGAAAAGGTACAATTTTGA
1 AATCGAAAAGGTACAATTTTGA
8102075 AATCGAAAAGGTACAATTTTGA
1 AATCGAAAAGGTACAATTTTGA
8102097 TTAAGTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (22 bp):
AATCGAAAAGGTACAATTTTGA
Found at i:8103867 original size:13 final size:14
Alignment explanation
Indices: 8103849--8103886 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
8103839 AAAATAAAAC
*
8103849 TTAAATT-TTTTTA
1 TTAAATTATTTATA
8103862 TTAAATTAGTTTATA
1 TTAAATTA-TTTATA
8103877 TTAAATTATT
1 TTAAATTATT
8103887 AAATTCTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 7 0.32
14 2 0.09
15 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (14 bp):
TTAAATTATTTATA
Found at i:8114252 original size:38 final size:37
Alignment explanation
Indices: 8114210--8114352 Score: 101
Period size: 38 Copynumber: 3.6 Consensus size: 37
8114200 ACTAAGATTT
8114210 CTAGGCACAAAGCCTGATCAACACTGGCACAAAGCCTG
1 CTAGGCACAAAGCCTGAT-AACACTGGCACAAAGCCTG
**
8114248 CTAGGTGCAAAGCCTGAATAACA-TCGGCACAAAG-CTAG
1 CTAGGCACAAAGCCTG-ATAACACT-GGCACAAAGCCT-G
* * ** *
8114286 AATAACACCAGCACAAAGCCTGATTAACACCAGCACGAAGCCTG
1 -CT---A--GGCACAAAGCCTGA-TAACACTGGCACAAAGCCTG
8114330 CTAGGCACAAAGCCTGAATAACA
1 CTAGGCACAAAGCCTG-ATAACA
8114353 ATATAATTCA
Statistics
Matches: 81, Mismatches: 11, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
37 3 0.04
38 45 0.56
39 4 0.05
40 1 0.01
42 1 0.01
43 2 0.02
44 23 0.28
45 2 0.02
ACGTcount: A:0.38, C:0.29, G:0.20, T:0.13
Consensus pattern (37 bp):
CTAGGCACAAAGCCTGATAACACTGGCACAAAGCCTG
Found at i:8114327 original size:22 final size:22
Alignment explanation
Indices: 8114255--8114329 Score: 98
Period size: 22 Copynumber: 3.4 Consensus size: 22
8114245 CTGCTAGGTG
* *
8114255 CAAAGCCTGAATAACATCGGCA
1 CAAAGCCTGAATAACACCAGCA
8114277 CAAAG-CTAGAATAACACCAGCA
1 CAAAGCCT-GAATAACACCAGCA
*
8114299 CAAAGCCTGATTAACACCAGCA
1 CAAAGCCTGAATAACACCAGCA
*
8114321 CGAAGCCTG
1 CAAAGCCTG
8114330 CTAGGCACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.04
22 43 0.91
23 2 0.04
ACGTcount: A:0.41, C:0.29, G:0.17, T:0.12
Consensus pattern (22 bp):
CAAAGCCTGAATAACACCAGCA
Found at i:8123256 original size:22 final size:22
Alignment explanation
Indices: 8123228--8123300 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 22
8123218 AAGCTTGCTA
8123228 GGCACAAAGCCTGAATAACACC
1 GGCACAAAGCCTGAATAACACC
*
8123250 GGCACAAAGCCT-ACT---A--
1 GGCACAAAGCCTGAATAACACC
*
8123266 GG-AGCAAAGCTTGAATAACACC
1 GGCA-CAAAGCCTGAATAACACC
8123288 GGCACAAAGCCTG
1 GGCACAAAGCCTG
8123301 CTAAGCACAA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
15 1 0.03
16 9 0.23
17 2 0.05
18 1 0.03
20 1 0.03
21 2 0.05
22 22 0.56
23 1 0.03
ACGTcount: A:0.38, C:0.29, G:0.22, T:0.11
Consensus pattern (22 bp):
GGCACAAAGCCTGAATAACACC
Found at i:8123267 original size:38 final size:38
Alignment explanation
Indices: 8123207--8123316 Score: 150
Period size: 38 Copynumber: 2.9 Consensus size: 38
8123197 AACTTTTAAT
* * *
8123207 ACACTGGCACTAAGCTTGCTAGGCACAAAGCCTGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
* *
8123245 ACACCGGCACAAAGCCTACTAGG-AGCAAAGCTTGAATA
1 ACACCGGCACAAAGCCTGCTAGGCA-CAAAGCCTGAATA
*
8123283 ACACCGGCACAAAGCCTGCTAAGCACAAAGCCTG
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTG
8123317 CTAGGCACAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.02
38 60 0.97
39 1 0.02
ACGTcount: A:0.36, C:0.29, G:0.21, T:0.14
Consensus pattern (38 bp):
ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
Found at i:8123310 original size:16 final size:16
Alignment explanation
Indices: 8123289--8123329 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
8123279 AATAACACCG
8123289 GCACAAAGCCTGCTAA
1 GCACAAAGCCTGCTAA
*
8123305 GCACAAAGCCTGCTAG
1 GCACAAAGCCTGCTAA
8123321 GCACAAAGC
1 GCACAAAGC
8123330 TTGAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.37, C:0.32, G:0.22, T:0.10
Consensus pattern (16 bp):
GCACAAAGCCTGCTAA
Found at i:8128001 original size:18 final size:18
Alignment explanation
Indices: 8127973--8128025 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
8127963 ACTTACCGAG
*
8127973 CGATCACAGACAAACGTA
1 CGATCGCAGACAAACGTA
*
8127991 CGATCGTAGACAAACGTA
1 CGATCGCAGACAAACGTA
*
8128009 TGATCGCAGACAAACGT
1 CGATCGCAGACAAACGT
8128026 GGAGCAACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.15
Consensus pattern (18 bp):
CGATCGCAGACAAACGTA
Found at i:8139892 original size:18 final size:18
Alignment explanation
Indices: 8139871--8139915 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8139861 CATTCGTTTC
8139871 CAAAACATTATTC-ATTT
1 CAAAACATTATTCAATTT
* *
8139888 ACAAATCGTTATTCAATTT
1 -CAAAACATTATTCAATTT
8139907 CAAAACATT
1 CAAAACATT
8139916 TTCTTATTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (18 bp):
CAAAACATTATTCAATTT
Found at i:8143928 original size:44 final size:43
Alignment explanation
Indices: 8143879--8143961 Score: 157
Period size: 44 Copynumber: 1.9 Consensus size: 43
8143869 TTTAAGATTC
8143879 TTTTAAAAGGTTTCTGTATAAGAAATTGTATTGAGGATGAAAGA
1 TTTTAAAAGGTTTCTGTATAAGAAATTGTATTGA-GATGAAAGA
8143923 TTTTAAAAGGTTTCTGTATAAGAAATTGTATTGAGATGA
1 TTTTAAAAGGTTTCTGTATAAGAAATTGTATTGAGATGA
8143962 CAAGTTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
43 5 0.13
44 34 0.87
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (43 bp):
TTTTAAAAGGTTTCTGTATAAGAAATTGTATTGAGATGAAAGA
Found at i:8145055 original size:21 final size:21
Alignment explanation
Indices: 8145029--8145084 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
8145019 AATAGCAGTG
8145029 GCGGTGAGATTA-ATTACTGTA
1 GCGGTGAGATTAGA-TACTGTA
8145050 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
8145071 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
8145085 AACAGCGGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:8162219 original size:25 final size:25
Alignment explanation
Indices: 8162191--8162289 Score: 130
Period size: 25 Copynumber: 4.0 Consensus size: 25
8162181 GGACACACCA
*
8162191 CAGCTC-TCATGAGCTTACCGATTTT
1 CAGCTCGT-ATGAGCTTACCGATTCT
8162216 CAGCTCGTATGAGCTTACCGATTCT
1 CAGCTCGTATGAGCTTACCGATTCT
* *
8162241 CAGCTCGTATGACCTTACCGATTCA
1 CAGCTCGTATGAGCTTACCGATTCT
*
8162266 CAGCTCGTGA-GAGCATACCGATTC
1 CAGCTCGT-ATGAGCTTACCGATTC
8162290 ATTGATCGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 65 0.97
26 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATTCT
Found at i:8166942 original size:26 final size:26
Alignment explanation
Indices: 8166906--8166963 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
8166896 GTAAGTGTTC
8166906 TGAAACTGATACATGCTATGATATTA
1 TGAAACTGATACATGCTATGATATTA
* * *
8166932 TGAAACTGATATATGTTATGATATTC
1 TGAAACTGATACATGCTATGATATTA
8166958 TGAAAC
1 TGAAAC
8166964 CACTGTAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (26 bp):
TGAAACTGATACATGCTATGATATTA
Found at i:8170332 original size:8 final size:8
Alignment explanation
Indices: 8170319--8170343 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8170309 GTGCTTGATT
8170319 TTATTTAA
1 TTATTTAA
8170327 TTATTTAA
1 TTATTTAA
8170335 TTATTTAA
1 TTATTTAA
8170343 T
1 T
8170344 ATTCCATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTATTTAA
Found at i:8173485 original size:16 final size:16
Alignment explanation
Indices: 8173464--8173521 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
8173454 TATACAATTT
8173464 ATTTATTTTATATATA
1 ATTTATTTTATATATA
* *
8173480 ATTTATTCTATATGTAA
1 ATTTATTTTATATAT-A
* * *
8173497 ATTT-TTGTACATATT
1 ATTTATTTTATATATA
8173512 ATTTATTTTA
1 ATTTATTTTA
8173522 AAAAATTTCG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
15 4 0.12
16 24 0.73
17 5 0.15
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (16 bp):
ATTTATTTTATATATA
Found at i:8175702 original size:26 final size:26
Alignment explanation
Indices: 8175666--8175720 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
8175656 TAGAAGTGGA
8175666 TCTCTACTTCATTTATACTTCTTATG
1 TCTCTACTTCATTTATACTTCTTATG
8175692 TCTCTACTTCATTTATACTTCTTATG
1 TCTCTACTTCATTTATACTTCTTATG
8175718 TCT
1 TCT
8175721 ATAAATTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.24, G:0.04, T:0.55
Consensus pattern (26 bp):
TCTCTACTTCATTTATACTTCTTATG
Found at i:8175856 original size:16 final size:16
Alignment explanation
Indices: 8175837--8175867 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8175827 ATTTTATAAC
8175837 ATTTTTATAATTTTTA
1 ATTTTTATAATTTTTA
*
8175853 ATTTTTTTAATTTTT
1 ATTTTTATAATTTTT
8175868 TTTCTTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTATAATTTTTA
Found at i:8179310 original size:11 final size:11
Alignment explanation
Indices: 8179275--8179311 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
8179265 AAATGGTAGT
*
8179275 AAAATAACAAT
1 AAAATAACAAC
8179286 AAAATAACAAC
1 AAAATAACAAC
*
8179297 AAAATAACAGC
1 AAAATAACAAC
8179308 AAAA
1 AAAA
8179312 CAATTGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.73, C:0.14, G:0.03, T:0.11
Consensus pattern (11 bp):
AAAATAACAAC
Found at i:8180952 original size:16 final size:16
Alignment explanation
Indices: 8180915--8180954 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8180905 TTAATAAAAT
* *
8180915 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
8180931 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
8180947 TAAAATTA
1 TAAAATTA
8180955 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:8181033 original size:59 final size:59
Alignment explanation
Indices: 8180965--8181104 Score: 262
Period size: 59 Copynumber: 2.4 Consensus size: 59
8180955 TCAAATTATT
* *
8180965 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTCAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
8181024 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
8181083 AATTATTAATTGTATTAATTGT
1 AATTATTAATTGTATTAATTGT
8181105 ATTAATTGTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 79 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:8181098 original size:9 final size:9
Alignment explanation
Indices: 8181086--8181113 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8181076 TTTATCAAAT
8181086 TATTAATTG
1 TATTAATTG
8181095 TATTAATTG
1 TATTAATTG
8181104 TATTAATTG
1 TATTAATTG
8181113 T
1 T
8181114 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:8181256 original size:22 final size:23
Alignment explanation
Indices: 8181208--8181254 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
8181198 GTAAATAAAC
8181208 TTAAAATAAAAAACTATTATATT
1 TTAAAATAAAAAACTATTATATT
8181231 TTAAAATAAAAAA-TATATATATT
1 TTAAAATAAAAAACTAT-TATATT
8181254 T
1 T
8181255 AATATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
TTAAAATAAAAAACTATTATATT
Found at i:8181627 original size:14 final size:14
Alignment explanation
Indices: 8181608--8181647 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8181598 TTGATTGCCA
8181608 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
8181622 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
8181636 GGAAAATGTTTT
1 GTAAAATGTTTT
8181648 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:8181656 original size:20 final size:20
Alignment explanation
Indices: 8181631--8181670 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8181621 CGTAAAATGA
*
8181631 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
8181651 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8181671 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:8181660 original size:34 final size:35
Alignment explanation
Indices: 8181616--8181683 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 35
8181606 CAGTAAAATG
*
8181616 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
8181650 TTTTCTGTAAAATGATTTACTGGAAAATATTTTA
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTA
8181684 TGGTGTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:8184449 original size:10 final size:10
Alignment explanation
Indices: 8184434--8184460 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8184424 AGAGATAACA
8184434 GAAGAAGGTT
1 GAAGAAGGTT
8184444 GAAGAAGGTT
1 GAAGAAGGTT
8184454 GAAGAAG
1 GAAGAAG
8184461 AGAAAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (10 bp):
GAAGAAGGTT
Found at i:8188717 original size:29 final size:30
Alignment explanation
Indices: 8188674--8188740 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
8188664 ACATACATAC
*
8188674 ATACATACATTTTTTATAATATATATATAT
1 ATACATACATGTTTTATAATATATATATAT
* * *
8188704 GTACATA-ATGTTTTTTAATTTATATATAT
1 ATACATACATGTTTTATAATATATATATAT
8188733 ATACATAC
1 ATACATAC
8188741 CTATATATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 25 0.81
30 6 0.19
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.49
Consensus pattern (30 bp):
ATACATACATGTTTTATAATATATATATAT
Found at i:8189323 original size:73 final size:73
Alignment explanation
Indices: 8189213--8189356 Score: 252
Period size: 73 Copynumber: 2.0 Consensus size: 73
8189203 TCTTTTCAAA
* * * *
8189213 CTCAAGTTTTAAACGATCTTGGGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGGTCCC
1 CTCAAGTTTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCC
8189278 TTTTTTCT
66 TTTTTTCT
8189286 CTCAAGTTTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCC
8189351 TTTTTT
66 TTTTTT
8189357 AAATCCGAGA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (73 bp):
CTCAAGTTTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCC
TTTTTTCT
Found at i:8193883 original size:132 final size:132
Alignment explanation
Indices: 8193718--8194350 Score: 883
Period size: 132 Copynumber: 4.8 Consensus size: 132
8193708 AGATCAAAAG
* * *
8193718 CACCAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAAATCATGTCTCCCTAAG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
* * * * *
8193783 CAATAGTGGAGTAGATCGAAGACGACGAATCTTATCTTCTCAAGGTAATAAGGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
8193848 GC
131 GC
* * *
8193850 CACCAGTCTTATCTCCTTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCT-AG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
* *** *
8193914 ACAGTAGTGGAGCAGATCGAATACGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCTGATTTA
66 -CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
8193979 AGC
130 AGC
* * *
8193982 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGATTAAAGATTGTAGATCATGTCTCCCTAAG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
* * * *
8194047 CAGTAGTAGAGCAGATCAAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAG
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
8194112 GC
131 GC
* * * *
8194114 CACCAAT-TCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTAA
1 CACCAGTCT-TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAA
* **
8194178 GCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
65 GCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
8194243 AGC
130 AGC
* * * * *
8194246 CACCAGTCCTATCTTCCTTAGTAGCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAG
1 CACCAGTCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
* * * *
8194311 CAGTAGTGGAGCAGATCAAAGACAACGACTCTTATTTTCC
66 CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCC
8194351 TGGCTTTGCA
Statistics
Matches: 438, Mismatches: 59, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
131 2 0.00
132 434 0.99
133 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (132 bp):
CACCAGTCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
GC
Found at i:8194129 original size:264 final size:264
Alignment explanation
Indices: 8193718--8194333 Score: 977
Period size: 264 Copynumber: 2.3 Consensus size: 264
8193708 AGATCAAAAG
* * *
8193718 CACCAG-CCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAAATCATGTCTCCCTAA
1 CACCAGTCC-TATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAA
* * * * *
8193782 GCAATAGTGGAGTAGATCGAAGACGACGAATCTTATCTTCTCAAGGTAATAAGGAAGCAGATTTA
65 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCCCAAGGTAATAAGGAAGCAGATTTA
* *
8193847 AGCCACCAGTCTTATCTCCTTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCT
130 AGCCACCAGTCTTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCT
* *
8193912 -AGACAGTAGTGGAGCAGATCGAATACGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCTGAT
195 AAG-CAGTAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGAT
8193976 TTAAGC
259 TTAAGC
*
8193982 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGATTAAAGATTGTAGATCATGTCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAG
* * * *
8194047 CAGTAGTAGAGCAGATCAAAGACGACAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAG
66 CAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCCCAAGGTAATAAGGAAGCAGATTTAA
*
8194112 GCCACCAAT-TCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCT
131 GCCACCAGTCT-TATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCT
* *
8194176 AAGCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATT
195 AAGCAGTAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATT
8194241 TAAGC
260 TAAGC
* * *
8194246 CACCAGTCCTATCTTCCTTAGTAGCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAG
8194311 CAGTAGTGGAGCAGATCAAAGAC
66 CAGTAGTGGAGCAGATCAAAGAC
8194334 AACGACTCTT
Statistics
Matches: 324, Mismatches: 25, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
263 1 0.00
264 319 0.98
265 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (264 bp):
CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAG
CAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCCCAAGGTAATAAGGAAGCAGATTTAA
GCCACCAGTCTTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTA
AGCAGTAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTT
AAGC
Found at i:8194320 original size:44 final size:44
Alignment explanation
Indices: 8193727--8194326 Score: 140
Period size: 44 Copynumber: 13.6 Consensus size: 44
8193717 GCACCAGCCT
* * * * *
8193727 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAAATCA
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCC
* * * *
8193771 TGTCTCCCTAAGCAATAGTGGAGTAGATCGAAGAC-G-ACGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTA-G-ATCC
* * * * * *** *
8193815 TATCT-TCTCAAG--GTAATAAGGAAGCAGATTTAAGCCACCAG-TCT
1 TATCTCCCT-AAGCAGTAGT--GG-AGTAGATTGAAGACTGTAGATCC
* * * * * *
8193859 TATCTCCTTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCC
* * * * * * *
8193903 TGTCTCCCT-AGACAGTAGTGGAGCAGATCGAATACGGTAAATCT
1 TATCTCCCTAAG-CAGTAGTGGAGTAGATTGAAGACTGTAGATCC
* * * ***
8193947 TATCTTCCC-AAGGTAGTAG-GGAAGCT-GATTTAAGCCACCAG-TCC
1 TATC-TCCCTAA-GCAGTAGTGG-AG-TAGATTGAAGACTGTAGATCC
* * * * *
8193991 TATCTCCCTGAGCAGCAGTGGAGTAGATTAAAGATTGTAGATCA
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCC
* * * ** * * *
8194035 TGTCTCCCTAAGCAGTAGTAGAGCAGATCAAAGAC-GACAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTG-TAGATCC
* * * * * *** *
8194079 TATCTTCCC-AAGGTAGTAG-GGAAGCAGATTTAGGCCACCA-ATTC
1 TATC-TCCCTAA-GCAGTAGTGG-AGTAGATTGAAGACTGTAGATCC
* * * * *
8194123 TATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCC
** * * *
8194167 TGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGT-GAATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAG-ATCC
* * * * ***
8194211 TATCTTCCC-AAGGTAGTAG-GGAAGCAGATTTAAGCCACCAG-TCC
1 TATC-TCCCTAA-GCAGTAGTGG-AGTAGATTGAAGACTGTAGATCC
* * * * * *
8194255 TATCTTCCTTAGTAGCAGTGGAGTAGATTGAAGATTGTAGATCA
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCC
* *
8194299 TGTCTCCCTAAGCAGTAGTGGAGCAGAT
1 TATCTCCCTAAGCAGTAGTGGAGTAGAT
8194327 CAAAGACAAC
Statistics
Matches: 380, Mismatches: 138, Indels: 76
0.64 0.23 0.13
Matches are distributed among these distances:
42 5 0.01
43 77 0.20
44 219 0.58
45 72 0.19
46 6 0.02
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCC
Found at i:8194686 original size:437 final size:437
Alignment explanation
Indices: 8194074--8195398 Score: 2488
Period size: 437 Copynumber: 3.0 Consensus size: 437
8194064 AAAGACGACA
*
8194074 AATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGC
1 AATCTTGT-TTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGC
8194139 AGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGG
65 AGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGG
*
8194204 TGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTTCCTTAGTA
130 TGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTTAGTA
8194269 GCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
195 GCAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* *
8194334 AACGACTCTTATTTTCCTGGCTTTGCAGTGGAACAAATTAAAGCTAAAGATAGTGAATATTGTTT
260 AACGACTCTTATTTTCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGATAGTGAATCTTGTTT
8194399 CCCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAAT
325 CCCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAAT
8194464 CCTATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
390 CCTATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
8194512 AATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGCA
1 AATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGCA
*
8194577 GTAGAGTAGGTTGAAGATTGTAGATCTTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGT
66 GTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGT
*
8194642 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAGTCCTATCTCCCTTAGTAG
131 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTTAGTAG
8194707 CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACA
196 CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACA
* * *
8194772 ACGACTCTTATTTTCTTGGCTTTGCAGTGGAACAGATTAAAGTTAAAGATAGCGAATCTTGTTTC
261 ACGACTCTTATTTTCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGATAGTGAATCTTGTTTC
8194837 CCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAATC
326 CCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAATC
*
8194902 ATATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
391 CTATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
* *
8194949 AATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTAAGCAGTA
1 AATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGCA
*
8195014 GTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCTTAAGCAGTAGTGGAGTAGATCGAAGACGGT
66 GTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGT
*
8195079 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTTCTATCTCCCTTAGTAG
131 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTTAGTAG
*
8195144 CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGACA
196 CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACA
* *
8195209 GCGACTCTTATTTTCCTAGCTTTGCAGTGGAACAGATTAAAGCTAAAGATAGTGAATCTTGTTTC
261 ACGACTCTTATTTTCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGATAGTGAATCTTGTTTC
8195274 CCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAATC
326 CCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAATC
8195339 CTATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
391 CTATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
8195386 AATCTTGTTTCCC
1 AATCTTGTTTCCC
8195399 TGGCATTGCA
Statistics
Matches: 864, Mismatches: 23, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
437 857 0.99
438 7 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (437 bp):
AATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGCA
GTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGT
GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTTAGTAG
CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACA
ACGACTCTTATTTTCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGATAGTGAATCTTGTTTC
CCTGGCATTGTAGTAGAATATATTAAAGCTGAAGTGGAGTGGATTAAAGATGAAGGCAGCGAATC
CTATCTCCTTGGTGTTACAGTAGAACAGATTAAAGCTAAAGGTAGCG
Found at i:8194757 original size:132 final size:131
Alignment explanation
Indices: 8194511--8194770 Score: 394
Period size: 132 Copynumber: 2.0 Consensus size: 131
8194501 TAAAGGTAGC
* * * *
8194511 GAATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTGAGCAGC
1 GAATCTTATTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAATCCTATCTCCCTGAGCAGC
* * * *
8194576 AGTAGAGTAGGTTGAAGATTGTAGATCTTGCCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGG
66 AGTAGAGTAGATTGAAGATTGTAGATCATGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
8194641 T
131 T
* * *
8194642 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAGTCCTATCTCCCTTAGTAG
1 GAATCTTAT-TTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAATCCTATCTCCCTGAGCAG
* *
8194707 CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
65 CAGTAGAGTAGATTGAAGATTGTAGATCATGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
8194771 AACGACTCTT
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
131 8 0.07
132 107 0.93
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (131 bp):
GAATCTTATTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAATCCTATCTCCCTGAGCAGC
AGTAGAGTAGATTGAAGATTGTAGATCATGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
T
Found at i:8195194 original size:132 final size:131
Alignment explanation
Indices: 8194948--8195221 Score: 386
Period size: 132 Copynumber: 2.1 Consensus size: 131
8194938 TAAAGGTAGC
* * *
8194948 GAATCTTGTTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCCACCAATTCTATCTCCCTAAGCAGT
1 GAATCTTATTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATTCTATCTCCCTAAGCAGC
* * * * * *
8195013 AGTAGAGTAGGTTGAAGATTGTAGATCCTGCCTCCTTAAGCAGTAGTGGAGTAGATCGAAGACGG
66 AGTAGAGTAGATTGAAGATTGTAGATCATGCCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGG
8195078 T
131 T
* * *
8195079 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTTCTATCTCCCTTAGTAG
1 GAATCTTAT-TTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATTCTATCTCCCTAAGCAG
* * *
8195144 CAGTGGAGTAGATTGAAGATTGTAGATCATGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGACA
65 CAGTAGAGTAGATTGAAGATTGTAGATCATGCCTCCCTAAACAGTAGTGGAGCAGATCAAAGACG
*
8195209 GC
130 GT
*
8195211 GACTCTTATTT
1 GAATCTTATTT
8195222 TCCTAGCTTT
Statistics
Matches: 125, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
131 10 0.08
132 115 0.92
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (131 bp):
GAATCTTATTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATTCTATCTCCCTAAGCAGC
AGTAGAGTAGATTGAAGATTGTAGATCATGCCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGG
T
Found at i:8195450 original size:51 final size:51
Alignment explanation
Indices: 8195315--8195450 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 51
8195305 AAGTGGAGTG
* * * * ** *
8195315 GATTAAAGATGAAGGCAGCGAATCCTATCTCCTTGGTGTTACAGTAGAACA
1 GATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGCATTACAGCAGAACA
* * * * *
8195366 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGCAGAGCA
1 GATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGCATTACAGCAGAACA
8195417 GATTAAAGCTGAAGGTAGCGAATCTTATCTCCCT
1 GATTAAAGCTGAAGGTAGCGAATCTTATCTCCCT
8195451 AGCGTTAAAG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (51 bp):
GATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTGGCATTACAGCAGAACA
Found at i:8195588 original size:45 final size:44
Alignment explanation
Indices: 8195482--8195605 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 44
8195472 ATGGCGAATT
* *
8195482 TTATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGTCACTAATC
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTCACTAATC
* *
8195526 TTATC-CTCCTAAAGTTGCAGTGGGGCAGATTGATCGT-ACTAAGTC
1 TTATCTC-CCTAAAGTTGCAGTGGAGCAGATTGA-AGTCACTAA-TC
* * * *
8195571 TTATCTCCCTGAAGTTGCAGTAGAGAAGACTGAAG
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
8195606 ATAGCGAATC
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
44 35 0.53
45 30 0.45
46 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (44 bp):
TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTCACTAATC
Found at i:8195813 original size:45 final size:44
Alignment explanation
Indices: 8195751--8195956 Score: 171
Period size: 44 Copynumber: 4.6 Consensus size: 44
8195741 AGAAAGTAAG
* * * *
8195751 TCTTATC-CCTCTGAAGTTGCAGTGGGGTAGACTGAAGATGACAAA
1 TCTTATCTCC-CTAAAGTTGCAGTGGAGCAGACTGAAGA-AACAAA
* * * * * *
8195796 TTTTATCTCCTTAAAGTTGCAGTAGAGCAGATTGAAGCCAACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG-AAACAAA
* ** *
8195841 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGACTAAACCAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * ** *
8195885 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACTAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * * *
8195929 CCCTACCTCCCTGAAGTTGCAGTGGAGC
1 TCTTATCTCCCTAAAGTTGCAGTGGAGC
8195957 GGATTAAAAT
Statistics
Matches: 127, Mismatches: 32, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
44 64 0.50
45 61 0.48
46 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
Found at i:8195899 original size:44 final size:45
Alignment explanation
Indices: 8195748--8195915 Score: 166
Period size: 45 Copynumber: 3.8 Consensus size: 45
8195738 TGAAGAAAGT
* * * *
8195748 AAGTCTTATC-CCTCTGAAGTTGCAGTGGGGTAGACTGAAG-ATGAC
1 AAGTCTTATCTCC-CTAAAGTTGCAGTGGAGCAGACTGAAGCA-AAC
* * * * * *
8195793 AAATTTTATCTCCTTAAAGTTGCAGTAGAGCAGATTGAAGCCAAC
1 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGCAAAC
*
8195838 AAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTG-A-CTAAACC
1 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGC-AAA-C
8195883 AA-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
1 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
8195916 TTAAAGTTAC
Statistics
Matches: 101, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.01
44 33 0.33
45 65 0.64
46 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGCAAAC
Found at i:8195983 original size:44 final size:44
Alignment explanation
Indices: 8195751--8195991 Score: 150
Period size: 44 Copynumber: 5.4 Consensus size: 44
8195741 AGAAAGTAAG
* * * * *
8195751 TCTTATC-CCTCTGAAGTTGCAGTGGGGTAGACTGAAGATGACAAA
1 TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGA-TTAAAATGACTAA
* * * * ****
8195796 TTTTATCTCCTTAAAGTTGCAGTAGAGCAGATTGAAGCCAAC-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATGACTAA
* * * * *
8195840 GTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGACTAA--ACCAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAATGACTAA
* * *
8195885 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGACTAA
* * * * *
8195929 CCCTACCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGA-TGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGACT-AA
8195973 TCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTG
8195992 TAATAGAGTA
Statistics
Matches: 153, Mismatches: 34, Indels: 19
0.74 0.17 0.09
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 89 0.58
45 57 0.37
46 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGACTAA
Found at i:8196329 original size:404 final size:403
Alignment explanation
Indices: 8195634--8196395 Score: 1159
Period size: 404 Copynumber: 1.9 Consensus size: 403
8195624 TTGGCATGAC
* *
8195634 AGTGGAACATATTAAAGCTAAATGTAGCGAATCTTGTTTCCCTGCATTGCAGCGGAGCAGATTAA
1 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGCATTGCAGCGGAGCAGATTAA
* *
8195699 AGCTGAAGGCAACAAATCTTATCTCCCTAGCATTAAAATTGAAGAAAGTAAGTCTTATCCCTCTG
66 AGCTGAAGGCAACAAATCTTATCTCCCTAGCATTAAAATTGAAGAAAGTAAGTCTTATCCCCCTA
* * * * * *
8195764 AAGTTGCAGTGGGGTAGACTGAAGATGACAAATTTTATCTCCTTAAAGTTGCAGTAGAGCAGATT
131 AAGTTACAATGGGGCAAACTGAAGATGACAAATATTATCTCCCTAAAGTTGCAGTAGAGCAGATT
* * * *
8195829 GAAGCCAACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGACTAAACCAATCTTATCTC
196 AAAGCCAACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAAACTGACTAAACCAATCTTATCTC
* * * *
8195894 CCTAAAGTTGCAGTGGAGCAGATTAAAGTTACTAACCCTACCTCCCTGAAGTTGCAGTGGAGCGG
261 CCTAAAGTTGCAGTGGAACAAATTAAAGTTACTAACCCTACCTCCCTGAAGCTGCAGTGAAGCGG
*
8195959 ATTAAAATGATGGATCTTATCTCCCTGAAGTTGTAATAGAGTAGATTGAAGACACCAGACTTATC
326 ATTAAAATGATGAATCTTATCTCCCTGAAGTTGTAATAGAGTAGATTGAAGACACCAGACTTATC
8196024 TCATTGGCGTTAT
391 TCATTGGCGTTAT
8196037 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGCGGAGCAGATTA
1 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCT-GCATTGCAGCGGAGCAGATTA
* * *
8196102 AAGCTGAAGGCAGCGAATCTTATCTCCCT-GACGTTAAAATTGAAGAAAGTAAGTCTTATCCCCC
65 AAGCTGAAGGCAACAAATCTTATCTCCCTAG-CATTAAAATTGAAGAAAGTAAGTCTTATCCCCC
* ** *
8196166 TAAAGTTACAATGGGGCAAACTGAAGAT-AGCAAATATTATCTCCCTGAAGTTGGGGTGGAGCAG
129 TAAAGTTACAATGGGGCAAACTGAAGATGA-CAAATATTATCTCCCTAAAGTTGCAGTAGAGCAG
* * **
8196230 ATTAAAGCCAACAAGTCTTATCTCTCTGAAGTTGCAGTGAAGCAAACTGACTATTCCAATCTTAT
193 ATTAAAGCCAACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAAACTGACTAAACCAATCTTAT
* * ** *
8196295 TTCCCTAAAGTTGCAGTGGAACAAATTGAAGTTACTAGTCCTATCTCCCTGAAGCTGCAGTGAAG
258 CTCCCTAAAGTTGCAGTGGAACAAATTAAAGTTACTAACCCTACCTCCCTGAAGCTGCAGTGAAG
*
8196360 CGGATTAAAATGATGAATCTTATCTCTCTGAAGTTG
323 CGGATTAAAATGATGAATCTTATCTCCCTGAAGTTG
8196396 CAGTAGAGCA
Statistics
Matches: 320, Mismatches: 36, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
403 43 0.13
404 277 0.87
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (403 bp):
AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGCATTGCAGCGGAGCAGATTAA
AGCTGAAGGCAACAAATCTTATCTCCCTAGCATTAAAATTGAAGAAAGTAAGTCTTATCCCCCTA
AAGTTACAATGGGGCAAACTGAAGATGACAAATATTATCTCCCTAAAGTTGCAGTAGAGCAGATT
AAAGCCAACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAAACTGACTAAACCAATCTTATCTC
CCTAAAGTTGCAGTGGAACAAATTAAAGTTACTAACCCTACCTCCCTGAAGCTGCAGTGAAGCGG
ATTAAAATGATGAATCTTATCTCCCTGAAGTTGTAATAGAGTAGATTGAAGACACCAGACTTATC
TCATTGGCGTTAT
Found at i:8196739 original size:138 final size:138
Alignment explanation
Indices: 8196481--8196782 Score: 387
Period size: 138 Copynumber: 2.2 Consensus size: 138
8196471 AGATAGCATA
* * * * * * *
8196481 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA-CGAC-AAGTCCTATCTCCCTCAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAA-TTCTATCACCCTAAAGTTGC
* *
8196542 AGTGGAGCTAATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTAC
65 AGTGAAGCGAATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTAC
*
8196607 CATAATAAG
130 CATAACAAG
*
8196616 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATTCTATCACCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATTCTATCACCCTAAAGTTGCA
* * * * * * *
8196681 GTGAAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGGGTTAAATTTACC
66 GTGAAGCGAATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTACC
*
8196746 ATGACAAG
131 ATAACAAG
*
8196754 TCTTATCTCCCTGACGTTGCAGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
8196783 AACTAAAACC
Statistics
Matches: 142, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
135 28 0.20
136 1 0.01
137 1 0.01
138 110 0.77
139 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (138 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATTCTATCACCCTAAAGTTGCA
GTGAAGCGAATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTACC
ATAACAAG
Found at i:8196830 original size:138 final size:138
Alignment explanation
Indices: 8196552--8196820 Score: 333
Period size: 138 Copynumber: 1.9 Consensus size: 138
8196542 AGTGGAGCTA
*
8196552 ATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTACCATAATAAGT
1 ATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTACCATAACAAGT
* * * * * * * * *
8196617 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATTCTATCACCCTAAAGTTGCAG
66 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAACCACAAATTCTATCACCCTAAAGTTACAA
8196682 TGAAGCGG
131 TGAAGCGG
* * * * * * *
8196690 ATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGGGTTAAATTTACCATGACAAGT
1 ATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTACCATAACAAGT
* * * *
8196755 CTTATCTCCCTGACGTTGCAGTGGAGCAAACTAAAACCACAAA-TCTCGTCCCCCTGAAGTTACA
66 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAACCACAAATTCT-ATCACCCTAAAGTTACA
8196819 AT
130 AT
8196821 AGAGTGGATT
Statistics
Matches: 109, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
137 3 0.03
138 106 0.97
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (138 bp):
ATTAAAATGATAAATCCTATACCTCTAAAGTTGCAGCAGGCCGGATTAAATCTACCATAACAAGT
CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAACCACAAATTCTATCACCCTAAAGTTACAA
TGAAGCGG
Found at i:8198377 original size:28 final size:28
Alignment explanation
Indices: 8198346--8198417 Score: 110
Period size: 27 Copynumber: 2.6 Consensus size: 28
8198336 TTTTGTTATG
8198346 TATATATACATACATACATTTTTTATAA
1 TATATATACATACATACATTTTTTATAA
*
8198374 TATATATACATACATA-ATTTTTTTTAA
1 TATATATACATACATACATTTTTTATAA
* *
8198401 TTTATATATATACATAC
1 TATATATACATACATAC
8198418 CTATATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.49
Consensus pattern (28 bp):
TATATATACATACATACATTTTTTATAA
Found at i:8198461 original size:14 final size:14
Alignment explanation
Indices: 8198403--8198518 Score: 51
Period size: 14 Copynumber: 8.4 Consensus size: 14
8198393 TTTTTTAATT
8198403 TATATATATACATA
1 TATATATATACATA
** * *
8198417 CCTATATAT-TATT
1 TATATATATACATA
* *
8198430 TATACTTTATAC-TT
1 TATA-TATATACATA
8198444 TATATATATACATA
1 TATATATATACATA
*
8198458 TATATATACACGCATA
1 TATATATATA--CATA
* * *
8198474 TACATACATAC-TT
1 TATATATATACATA
* * *
8198487 TTTA-ATTTATATA
1 TATATATATACATA
*
8198500 TATATACATACATA
1 TATATATATACATA
8198514 TATAT
1 TATAT
8198519 CTCTTTACAT
Statistics
Matches: 70, Mismatches: 25, Indels: 14
0.64 0.23 0.13
Matches are distributed among these distances:
12 3 0.04
13 17 0.24
14 39 0.56
16 11 0.16
ACGTcount: A:0.41, C:0.12, G:0.01, T:0.46
Consensus pattern (14 bp):
TATATATATACATA
Found at i:8199866 original size:377 final size:377
Alignment explanation
Indices: 8199165--8199887 Score: 1241
Period size: 377 Copynumber: 1.9 Consensus size: 377
8199155 AAAATATGCT
* *
8199165 ATTTTCCCGAAAATTCTCATCATTTCAATAAAGGATCGTATTTTAAATCTCTTTAAAGTTTTCAA
1 ATTTTCCCGAAAATTCTAAACATTTCAATAAAGGATCGTATTTTAAATCTCTTTAAAGTTTTCAA
* * *
8199230 TCTTTGACACTAAGACATTAATTAATCAACTAGGTATCAATTTTGGGCATTACGAGAGTGCTAAT
66 TCTTCGACACTAAGACATTAATTAATCAACTAGGTATCAATTTTGGGCATTACAAGAGTACTAAT
* * * *
8199295 TCTTCCTCCTACGTAACCGACTCCCGAACCCGTTTTTTTGAATTTCGTAGACCAAAATTGTTGTT
131 TCTTCCTCCTACGTAACCGACTCCCGAACCCATTTTTCTGAATTTCATAGACCAAAATCGTTGTT
8199360 TTAATAAAATTAAATTGTTTATTAAAAACAACCACTTTTCAAGGTGGCCCGATCACACCTTATCA
196 TTAATAAAATTAAATTGTTTATTAAAAACAACCACTTTTCAAGGTGGCCCGATCACACCTTATCA
*
8199425 AAAAGGATTGGTGGCGACTCTCGTATTCATTTTCATTTTTAAAATCTAAGTCGACACCCCTTTTA
261 AAAAGGATTGGTGGCGACTCTCGTATTCATTTTCATTTTTAAAATCCAAGTCGACACCCCTTTTA
8199490 TCAAAAAAATAATTTCGACAGCTTGGCGACTCCGGTGGGGACCCAAAATGTC
326 TCAAAAAAATAATTTCGACAGCTTGGCGACTCCGGTGGGGACCCAAAATGTC
8199542 ATTTTCCCGAAAATTCTAAACATTTCAATAAAGGATCGTATTTTAAATCTCTTTAAAGTTTTCAA
1 ATTTTCCCGAAAATTCTAAACATTTCAATAAAGGATCGTATTTTAAATCTCTTTAAAGTTTTCAA
* * *
8199607 TCTTCGACACTCAGACATTAATTAATCAACTAGGTATCAATTTTGGGCGTTACAAGGGTACTAA-
66 TCTTCGACACTAAGACATTAATTAATCAACTAGGTATCAATTTTGGGCATTACAAGAGTACTAAT
* * *
8199671 TCATTCCTCGTACGTAACCGACTCCCGAACTCATTTTTCTGAATTTCATGGACCAAAATCGTTGT
131 TC-TTCCTCCTACGTAACCGACTCCCGAACCCATTTTTCTGAATTTCATAGACCAAAATCGTTGT
**
8199736 TTTAATAAAATTAAATTGTTTATTAAAAACAACCACTTTTCAAGGTGGCTTGATCACACCTTATC
195 TTTAATAAAATTAAATTGTTTATTAAAAACAACCACTTTTCAAGGTGGCCCGATCACACCTTATC
*
8199801 AAAAAGGATTGGTGGCGACTCTCGTATTCATTTTCATTTTTAAAATCCAAGTCGACACTCCTTTT
260 AAAAAGGATTGGTGGCGACTCTCGTATTCATTTTCATTTTTAAAATCCAAGTCGACACCCCTTTT
**
8199866 ATCAAAAAAATGGTTTCGACAG
325 ATCAAAAAAATAATTTCGACAG
8199888 TTACAACGTA
Statistics
Matches: 324, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
376 2 0.01
377 322 0.99
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (377 bp):
ATTTTCCCGAAAATTCTAAACATTTCAATAAAGGATCGTATTTTAAATCTCTTTAAAGTTTTCAA
TCTTCGACACTAAGACATTAATTAATCAACTAGGTATCAATTTTGGGCATTACAAGAGTACTAAT
TCTTCCTCCTACGTAACCGACTCCCGAACCCATTTTTCTGAATTTCATAGACCAAAATCGTTGTT
TTAATAAAATTAAATTGTTTATTAAAAACAACCACTTTTCAAGGTGGCCCGATCACACCTTATCA
AAAAGGATTGGTGGCGACTCTCGTATTCATTTTCATTTTTAAAATCCAAGTCGACACCCCTTTTA
TCAAAAAAATAATTTCGACAGCTTGGCGACTCCGGTGGGGACCCAAAATGTC
Found at i:8200465 original size:26 final size:27
Alignment explanation
Indices: 8200420--8200475 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
8200410 AAATTTATTA
* *
8200420 AAATTATTAGAGATAGAAAAA-GATAT
1 AAATTATTAAAAATAGAAAAATGATAT
*
8200446 AAATTATTAAAAATATAAAAATTGATAT
1 AAATTATTAAAAATAGAAAAA-TGATAT
8200474 AA
1 AA
8200476 TCACAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 18 0.72
28 7 0.28
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTATTAAAAATAGAAAAATGATAT
Found at i:8200578 original size:20 final size:18
Alignment explanation
Indices: 8200536--8200591 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 18
8200526 TTTATTAAAC
8200536 TTATTA-AAAATAAAAAA
1 TTATTATAAAATAAAAAA
8200553 -TA-TATAAAATTACAAAAA
1 TTATTATAAAA-TA-AAAAA
8200571 TTATTATAAAAATATAAAAA
1 TTATTAT-AAAATA-AAAAA
8200591 T
1 T
8200592 ACTAAACTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
15 2 0.06
16 6 0.19
17 2 0.06
18 5 0.16
19 2 0.06
20 11 0.34
21 4 0.12
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
TTATTATAAAATAAAAAA
Found at i:8201283 original size:30 final size:30
Alignment explanation
Indices: 8201249--8201307 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
8201239 AATTTTATAA
8201249 ATAATTAATA-TTTAT-TACTTAAAAATATTT
1 ATAATTAATATTTTATATA-TT-AAAATATTT
*
8201279 ATAATTTATATTTTATATATTAAAATATT
1 ATAATTAATATTTTATATATTAAAATATT
8201308 AACAACAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 17 0.65
31 7 0.27
32 2 0.08
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
ATAATTAATATTTTATATATTAAAATATTT
Found at i:8210921 original size:18 final size:18
Alignment explanation
Indices: 8210898--8210941 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
8210888 TGGTGAAAAG
8210898 TATAAAT-TTTAGAGTTGT
1 TATAAATATTTAGAGTT-T
*
8210916 TATAAATATTTTGAGTTT
1 TATAAATATTTAGAGTTT
8210934 TATAAATA
1 TATAAATA
8210942 ACATTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (18 bp):
TATAAATATTTAGAGTTT
Found at i:8211141 original size:20 final size:20
Alignment explanation
Indices: 8211116--8211153 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8211106 GAACAAAACA
*
8211116 TGAGAGTGAACTAAGAGAAT
1 TGAGAGAGAACTAAGAGAAT
*
8211136 TGAGAGAGAATTAAGAGA
1 TGAGAGAGAACTAAGAGA
8211154 GGATTGAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.32, T:0.18
Consensus pattern (20 bp):
TGAGAGAGAACTAAGAGAAT
Found at i:8211143 original size:11 final size:11
Alignment explanation
Indices: 8211129--8211193 Score: 62
Period size: 11 Copynumber: 5.9 Consensus size: 11
8211119 GAGTGAACTA
8211129 AGAGAATTGAG
1 AGAGAATTGAG
*
8211140 AGAGAATTAAG
1 AGAGAATTGAG
*
8211151 AGAGGATTGAG
1 AGAGAATTGAG
*
8211162 A-ATAAATTGAG
1 AGA-GAATTGAG
*
8211173 AGAGAGTTGAG
1 AGAGAATTGAG
8211184 A-ATGAATTGA
1 AGA-GAATTGA
8211194 AAAAGTGAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
10 2 0.05
11 40 0.93
12 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.32, T:0.22
Consensus pattern (11 bp):
AGAGAATTGAG
Found at i:8211192 original size:22 final size:22
Alignment explanation
Indices: 8211129--8211193 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
8211119 GAGTGAACTA
* *
8211129 AGAGAATTGAGAGA-GAATTAAG
1 AGAGAGTTGAGA-ATGAATTGAG
*
8211151 AGAG-GATTGAGAATAAATTGAG
1 AGAGAG-TTGAGAATGAATTGAG
8211173 AGAGAGTTGAGAATGAATTGA
1 AGAGAGTTGAGAATGAATTGA
8211194 AAAAGTGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.32, T:0.22
Consensus pattern (22 bp):
AGAGAGTTGAGAATGAATTGAG
Found at i:8218436 original size:6 final size:7
Alignment explanation
Indices: 8218415--8218439 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8218405 TCAAGTTGGA
8218415 TTCCTTT
1 TTCCTTT
8218422 TTCCTTT
1 TTCCTTT
8218429 TTCCTTT
1 TTCCTTT
8218436 TTCC
1 TTCC
8218440 CCACATGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (7 bp):
TTCCTTT
Found at i:8225144 original size:21 final size:19
Alignment explanation
Indices: 8225102--8225154 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
8225092 AGAACGTAAC
* *
8225102 AATTAAATTAAAAAATATTAA
1 AATTAAAAT-AAAAATACT-A
8225123 AATTAAAATAAAAATGACTA
1 AATTAAAATAAAAAT-ACTA
*
8225143 AATTAATATAAA
1 AATTAAAATAAA
8225155 TAAAGTTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
AATTAAAATAAAAATACTA
Found at i:8225457 original size:12 final size:12
Alignment explanation
Indices: 8225440--8225478 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
8225430 AAAACAATAC
8225440 CCAGGAAAGAAT
1 CCAGGAAAGAAT
*
8225452 CCAGGAAAAAAT
1 CCAGGAAAGAAT
8225464 CCAGGAAAGAAT
1 CCAGGAAAGAAT
8225476 CCA
1 CCA
8225479 CCTAGATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.08
Consensus pattern (12 bp):
CCAGGAAAGAAT
Found at i:8227827 original size:25 final size:24
Alignment explanation
Indices: 8227736--8227823 Score: 63
Period size: 25 Copynumber: 3.5 Consensus size: 24
8227726 AAGCTCATGC
*
8227736 GAGCCA-ATATCAGGAAGCTCCGGA
1 GAGCCATATATCAGGAAG-TCCGAA
* *
8227760 GAGCCATATATCAAGAAGCCCATGAAA
1 GAGCCATATATCAGGAAGTCC--G-AA
* *
8227787 GAGCC-TTTAATCGGGAAGTTCCGAA
1 GAGCCATAT-ATCAGGAAG-TCCGAA
8227812 GAGCCATATATC
1 GAGCCATATATC
8227824 GGGACACTCA
Statistics
Matches: 49, Mismatches: 8, Indels: 13
0.70 0.11 0.19
Matches are distributed among these distances:
24 8 0.16
25 20 0.41
26 6 0.12
27 13 0.27
28 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (24 bp):
GAGCCATATATCAGGAAGTCCGAA
Done.