Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 34 of 172
Found at i:8445193 original size:23 final size:22
Alignment explanation
Indices: 8445149--8445198 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
8445139 ATATACGTAT
8445149 AAATATAAAAATATTCATTTAA
1 AAATATAAAAATATTCATTTAA
8445171 AAATATGAAAAATTATTCA-TTAA
1 AAATAT-AAAAA-TATTCATTTAA
8445194 AAATA
1 AAATA
8445199 AATAAGTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 6 0.23
23 14 0.54
24 6 0.23
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATATAAAAATATTCATTTAA
Found at i:8446051 original size:14 final size:15
Alignment explanation
Indices: 8446015--8446045 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8446005 TTTAAATGGT
8446015 ATACAAAAAAAACAA
1 ATACAAAAAAAACAA
8446030 ATACAAAAAAAA-AA
1 ATACAAAAAAAACAA
8446044 AT
1 AT
8446046 CTAAAAGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (15 bp):
ATACAAAAAAAACAA
Found at i:8449208 original size:18 final size:18
Alignment explanation
Indices: 8449185--8449219 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8449175 TAGAACAGGA
8449185 AAGGACCTCATAGCCAAC
1 AAGGACCTCATAGCCAAC
*
8449203 AAGGACCTCTTAGCCAA
1 AAGGACCTCATAGCCAA
8449220 TCATTGCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.31, G:0.17, T:0.14
Consensus pattern (18 bp):
AAGGACCTCATAGCCAAC
Found at i:8451373 original size:207 final size:207
Alignment explanation
Indices: 8451035--8451615 Score: 552
Period size: 207 Copynumber: 2.8 Consensus size: 207
8451025 GACTCGTAAA
* * * * * * ** * * *
8451035 CGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCACCCAGTTGTTATATTAAGGTTCG
1 CGAAGAGCCGTAGCCTCCAACATAATTAGTGAGAACAAAACTCCCAACTATCATATTAAGGCTCG
* * * * * * * * * * * **
8451100 CAGGTGAAGAGTCACAGCCTCTAACACAGA-TGGCGATAGCAAGGCTCCCAACTGTTGTATTAAG
66 CAAGTGAAGAGCCGCAACCCCCAACACA-ATTAGCGAAAGCAAAGCTCTCAACTATCATATTAAG
* * *
8451164 GCTCACAAGCAAAGAGCCGCAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCATGTGTTATAT
130 GCTCACAAGCAAAGAGCCACAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATAT
*
8451229 TAAAGCTCGCAGG
195 TAAAGCTCACAGG
* * ** *
8451242 CGAAGATCCGTAGCCTCCAACATAATTAGTGAGAGCAAAACTCTTAACTATCATATTAAGGCTTG
1 CGAAGAGCCGTAGCCTCCAACATAATTAGTGAGAACAAAACTCCCAACTATCATATTAAGGCTCG
* * * * * *
8451307 CAAGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGTAAAGCTCTTAGCTATCATATTAAGG
66 CAAGTGAAGAGCCGCAACCCCCAACACAATTAGCGAAAGCAAAGCTCTCAACTATCATATTAAGG
** * * * * *
8451372 CTTGCAGGCGAAGAGCTATAGCCCCCAGCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATATT
131 CTCACAAGCAAAGAGCCACAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATATT
* *
8451437 AAGGCTCATAGG
196 AAAGCTCACAGG
* * * * *
8451449 CGAGGAGCCGTAGCCTCCAACATAGTTAGTGAGAACAAAGCTCCCAGCTGTCATATTAAGGCTCG
1 CGAAGAGCCGTAGCCTCCAACATAATTAGTGAGAACAAAACTCCCAACTATCATATTAAGGCTCG
* * * * * *
8451514 CAGGTGAAGAGGCGCAACCCCCAGCACAATTAGTGAAAGCAAAGCTCTCAACTGTCATATTAAGA
66 CAAGTGAAGAGCCGCAACCCCCAACACAATTAGCGAAAGCAAAGCTCTCAACTATCATATTAAGG
* * * * * * *
8451579 CTCGCGAGCGAAGGGCCATAGCCCCCATCACAGTTAG
131 CTCACAAGCAAAGAGCCACAGCCCCCACCATAGTTAG
8451616 TGAGAATTGA
Statistics
Matches: 302, Mismatches: 71, Indels: 2
0.81 0.19 0.01
Matches are distributed among these distances:
207 302 1.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.19
Consensus pattern (207 bp):
CGAAGAGCCGTAGCCTCCAACATAATTAGTGAGAACAAAACTCCCAACTATCATATTAAGGCTCG
CAAGTGAAGAGCCGCAACCCCCAACACAATTAGCGAAAGCAAAGCTCTCAACTATCATATTAAGG
CTCACAAGCAAAGAGCCACAGCCCCCACCATAGTTAGCAAGAACAAAGCTCCCAGGTGTCATATT
AAAGCTCACAGG
Found at i:8451604 original size:69 final size:69
Alignment explanation
Indices: 8451014--8451618 Score: 317
Period size: 69 Copynumber: 8.8 Consensus size: 69
8451004 ACAACATTCG
* * ** * ** * * * *
8451014 TGTCATATTAAGACTCGTAAACGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCACC
1 TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAAAGCAAAGCTCT
*
8451079 CAGT
66 CAGC
* * * * * * * * * * * * * *
8451083 TGTTATATTAAGGTTCGCAGGTGAAGAGTCACAGCCTCTAACACAGATGGCGATAGCAAGGCTCC
1 TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAAAGCAAAGCTCT
*
8451148 CAAC
66 CAGC
** * * * * ** * * * *
8451152 TGTTGTATTAAGGCTCACAAGCAAAGAGCCGCAGCCCCCACCATAGTTAG-CAAGAACAAAGCTC
1 TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAA-AGCAAAGCTC
*
8451216 CCATG-
65 TCA-GC
* * ** * * * * * *
8451221 TGTTATATTAAAGCTCGCAGGCGAAGATCCGTAGCCTCCAACATAATTAGTGAGAGCAAAACTCT
1 TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAAAGCAAAGCTCT
* *
8451286 TAAC
66 CAGC
* * * * * ** * * *
8451290 TATCATATTAAGGCTTGCAAGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAAAGTAAAGCTCT
1 TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAAAGCAAAGCTCT
*
8451355 TAGC
66 CAGC
* * * * * * * *
8451359 TATCATATTAAGGCTTGCAGGCGAAGAGCTATAGCCCCCAGCATAGTTAG-CAAGAACAAAGCTC
1 TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAA-AGCAAAGCTC
* *
8451423 CCAGG
65 TCAGC
** * * *
8451428 TGTCATATTAAGGCTCATAGGCG-AGGAGCCGTAGCCTCCAACATAGTTAGTGAGAA-CAAAGCT
1 TGTCATATTAAGGCTCGCAGGCGAAGG-GCCATAGCCCCCAACACAGTTAGTGA-AAGCAAAGCT
*
8451491 CCCAGC
64 CTCAGC
* * *
8451497 TGTCATATTAAGGCTCGCAGGTGAAGAGGCGCA-A-CCCCCAGCACAATTAGTGAAAGCAAAGCT
1 TGTCATATTAAGGCTCGCAGGCGAAG-GGC-CATAGCCCCCAACACAGTTAGTGAAAGCAAAGCT
*
8451560 CTCAAC
64 CTCAGC
* *
8451566 TGTCATATTAAGACTCGC-GAGCGAAGGGCCATAGCCCCCATCACAGTTAGTGA
1 TGTCATATTAAGGCTCGCAG-GCGAAGGGCCATAGCCCCCAACACAGTTAGTGA
8451619 GAATTGAGAA
Statistics
Matches: 413, Mismatches: 108, Indels: 30
0.75 0.20 0.05
Matches are distributed among these distances:
67 2 0.00
68 12 0.03
69 388 0.94
70 8 0.02
71 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (69 bp):
TGTCATATTAAGGCTCGCAGGCGAAGGGCCATAGCCCCCAACACAGTTAGTGAAAGCAAAGCTCT
CAGC
Found at i:8451616 original size:138 final size:138
Alignment explanation
Indices: 8451014--8451621 Score: 472
Period size: 138 Copynumber: 4.4 Consensus size: 138
8451004 ACAACATTCG
* * * * *
8451014 TGTCATATTAAGACTCGTAAACGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAGCAAAGCACC
1 TGTCATATTAAGGCTCGCAAGCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCC
* * * * * * * * * * * * *
8451079 CAGTTGTTATATTAAGGTTCGCAGGTGAAGAGTCACAGCCTCTAACACAGA-TGGCGATAGCAAG
66 CAGCTGTCATATTAAGGCTCGCAGGCGAAGAGGCGCAACCCCCAACACA-ATTAGTGAAAGCAAA
8451143 GCTCCCAAC
130 GCTCCCAAC
** * * * * * **
8451152 TGTTGTATTAAGGCTCACAAGCAAAGAGCCGCAGCCCCCACCATAGTTAGCAAGAACAAAGCTCC
1 TGTCATATTAAGGCTCGCAAGCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCC
* * ** * * * * *
8451217 CATG-TGTTATATTAAAGCTCGCAGGCGAAGATCCGTAGCCTCCAACATAATTAGTGAGAGCAAA
66 CA-GCTGTCATATTAAGGCTCGCAGGCGAAGAGGCGCAACCCCCAACACAATTAGTGAAAGCAAA
* **
8451281 ACTCTTAAC
130 GCTCCCAAC
* * * * *
8451290 TATCATATTAAGGCTTGCAAGTGAAGAGCCGCAGCCTCCAACACAGTTAGCGA-AAGTAAAGCTC
1 TGTCATATTAAGGCTCGCAAGCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAA-CAAAGCTC
** * * * * * * * *
8451354 TTAGCTATCATATTAAGGCTTGCAGGCGAAGA-GC-TATAGCCCCCAGCATAGTTAG-CAAGAAC
65 CCAGCTGTCATATTAAGGCTCGCAGGCGAAGAGGCGCA-A-CCCCCAACACAATTAGTGAA-AGC
**
8451416 AAAGCTCCCAGG
127 AAAGCTCCCAAC
** * * * *
8451428 TGTCATATTAAGGCTCATAGGCGAGGAGCCGTAGCCTCCAACATAGTTAGTGAGAACAAAGCTCC
1 TGTCATATTAAGGCTCGCAAGCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCC
* *
8451493 CAGCTGTCATATTAAGGCTCGCAGGTGAAGAGGCGCAACCCCCAGCACAATTAGTGAAAGCAAAG
66 CAGCTGTCATATTAAGGCTCGCAGGCGAAGAGGCGCAACCCCCAACACAATTAGTGAAAGCAAAG
*
8451558 CTCTCAAC
131 CTCCCAAC
* * * ** * *
8451566 TGTCATATTAAGACTCGCGAGCGAAGGGCCATAGCCCCCATCACAGTTAGTGAGAA
1 TGTCATATTAAGGCTCGCAAGCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAA
8451622 TTGAGAACTG
Statistics
Matches: 363, Mismatches: 96, Indels: 22
0.75 0.20 0.05
Matches are distributed among these distances:
136 2 0.01
137 6 0.02
138 346 0.95
139 8 0.02
140 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.20
Consensus pattern (138 bp):
TGTCATATTAAGGCTCGCAAGCGAAGAGCCGCAGCCTCCAACACAGTTAGTGAGAACAAAGCTCC
CAGCTGTCATATTAAGGCTCGCAGGCGAAGAGGCGCAACCCCCAACACAATTAGTGAAAGCAAAG
CTCCCAAC
Found at i:8452430 original size:15 final size:15
Alignment explanation
Indices: 8452410--8452451 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8452400 ATGGGTAGCT
*
8452410 CTAAGAGGAGGCACA
1 CTAAGAGGAGGAACA
* *
8452425 CTAAGAGGAGAAATA
1 CTAAGAGGAGGAACA
8452440 CTAAGAGGAGGA
1 CTAAGAGGAGGA
8452452 GAATTACCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.45, C:0.12, G:0.33, T:0.10
Consensus pattern (15 bp):
CTAAGAGGAGGAACA
Found at i:8454630 original size:22 final size:22
Alignment explanation
Indices: 8454605--8454649 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8454595 AATGTCAATT
*
8454605 CTAGGGATATAAAATGTTAGTA
1 CTAGGGATAGAAAATGTTAGTA
*
8454627 CTAGGGATAGATAATGTTAGTA
1 CTAGGGATAGAAAATGTTAGTA
8454649 C
1 C
8454650 CGGAGGCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (22 bp):
CTAGGGATAGAAAATGTTAGTA
Found at i:8462479 original size:18 final size:18
Alignment explanation
Indices: 8462448--8462485 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8462438 CAGGTGCGTT
*
8462448 TCCTAGCCCCTATATGTA
1 TCCTAACCCCTATATGTA
*
8462466 TCCTAACCCTTATATGTA
1 TCCTAACCCCTATATGTA
8462484 TC
1 TC
8462486 ATTTTCCGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.37
Consensus pattern (18 bp):
TCCTAACCCCTATATGTA
Found at i:8462944 original size:25 final size:25
Alignment explanation
Indices: 8462916--8462963 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8462906 TATTTTGATA
8462916 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
8462941 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
8462964 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:8463041 original size:23 final size:23
Alignment explanation
Indices: 8463006--8463431 Score: 372
Period size: 23 Copynumber: 18.7 Consensus size: 23
8462996 ATTAATACCC
8463006 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
*
8463030 TTAATTAAAAACCTTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* ***
8463054 --ACTTAAAAACCCTAA-CTCCC
1 TTAATTAAAAACCCTAACCTAAT
*
8463074 TTAACTTAAAAACTCTAACCTAA-
1 TTAA-TTAAAAACCCTAACCTAAT
*
8463097 TTAACTTTAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
*
8463121 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
8463144 TTAATTAAAAACCTTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* *
8463168 --ATTTAAAAACCATAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
8463189 TTAATTAAAAACCCTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* *
8463213 --ACTTAAAAACTCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
8463234 TTAATTAAAAACCCTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
*
8463258 --ACTTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
8463279 TAAATTAAAAACCCTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* **
8463303 --ACTTAAAAACCCTAACC-CCT
1 TTAATTAAAAACCCTAACCTAAT
8463323 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
*
8463347 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
8463370 TTAATTAAAAACCCTAAACCCTAA-
1 TTAATTAAAAACCCT-AA-CCTAAT
* *
8463394 --ACTTAAAAATCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
8463415 TTAATTAAAAACCCTAA
1 TTAATTAAAAACCCTAA
8463432 ACCCTAAACT
Statistics
Matches: 330, Mismatches: 37, Indels: 71
0.75 0.08 0.16
Matches are distributed among these distances:
19 2 0.01
20 22 0.07
21 12 0.04
22 70 0.21
23 169 0.51
24 25 0.08
25 30 0.09
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (23 bp):
TTAATTAAAAACCCTAACCTAAT
Found at i:8463175 original size:45 final size:45
Alignment explanation
Indices: 8463056--8463542 Score: 573
Period size: 45 Copynumber: 10.8 Consensus size: 45
8463046 AACCCTAAAC
* * *
8463056 TTAAAAACCCTAACTCCCTTAACTTAAAAACTCTAACCTAA-TTAA
1 TTAAAAACCCTAA-ACCCTAAACTTAAAAACCCTAACCTAATTTAA
* *
8463101 CTTTAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTAATTTAA
1 -TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAACCTAATTTAA
* * *
8463148 TTAAAAACCTTAAACCCTAAATTTAAAAACCATAACCTAATTTAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
*
8463193 TTAAAAACCCTAAACCCTAAACTTAAAAACTCTAACCTAATTTAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
*
8463238 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTAAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
**
8463283 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC-CCTTTAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
*
8463327 CTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTAATTTAA
1 -TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAACCTAATTTAA
*
8463374 TTAAAAACCCTAAACCCTAAACTTAAAAATCCTAACCTAATTTAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
* *** *
8463419 TTAAAAACCCTAAACCCTAAACTTAAAAACACTAACC-CCCTCAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
* * *
8463463 CTTAAAAACACT-AACCCTTAACTTAAAAACCCTAACC---CTTAA
1 -TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
* * *
8463505 TTTAAAAACACTAAACCCTTAACTTAAAAATCCTAACC
1 -TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
8463543 CTTAACTTAA
Statistics
Matches: 391, Mismatches: 35, Indels: 33
0.85 0.08 0.07
Matches are distributed among these distances:
42 15 0.04
43 30 0.08
44 33 0.08
45 226 0.58
46 66 0.17
47 15 0.04
48 6 0.02
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (45 bp):
TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
Found at i:8463232 original size:136 final size:134
Alignment explanation
Indices: 8463034--8463542 Score: 615
Period size: 136 Copynumber: 3.8 Consensus size: 134
8463024 CCTAATTTAA
* * * * *
8463034 TTAAAAACCTTAAACCC-TAAACTTAAAAACCCTAACTCCCTTAACTTAAAAACTCTAACCTAA-
1 TTAAAAACCATAACCCCTTTAACTTAAAAACCCTAA--CCCTAAACTTAAAAACCCTAACCTAAT
* * *
8463097 TTAACTTTAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCTTA
64 TTAA-TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
*
8463160 AACCCTAAAT
125 AACCCTAAAC
** *
8463170 TTAAAAACCATAACCTAATTTAA-TTAAAAACCCTAAACCCTAAACTTAAAAACTCTAACCTAAT
1 TTAAAAACCATAACC-CCTTTAACTTAAAAACCCT-AACCCTAAACTTAAAAACCCTAACCTAAT
*
8463234 TTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAACC
64 TTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACC
8463299 CTAAAC
129 CTAAAC
* *
8463305 TTAAAAACCCTAACCCCTTTAACTTAAAAACCCTAA-CCTAATTAAATTAAAAACCCTAACCTAA
1 TTAAAAACCATAACCCCTTTAACTTAAAAACCCTAACCCT-A--AACTTAAAAACCCTAACCTAA
*
8463369 TTTAATTAAAAACCCTAAACCCTAAACTTAAAAATCCTAACCTAATTTAATTAAAAACCCTAAAC
63 TTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAAC
8463434 CCTAAAC
128 CCTAAAC
* * * * *
8463441 TTAAAAA-CACTAACCCCCTCAACTTAAAAACACTAACCCTTAACTTAAAAACCCTAACC---CT
1 TTAAAAACCA-TAACCCCTTTAACTTAAAAACCCTAACCCTAAACTTAAAAACCCTAACCTAATT
* * *
8463502 TAATTTAAAAACACTAAACCCTTAACTTAAAAATCCTAACC
65 TAA-TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
8463543 CTTAACTTAA
Statistics
Matches: 333, Mismatches: 27, Indels: 30
0.85 0.07 0.08
Matches are distributed among these distances:
131 4 0.01
132 35 0.11
133 3 0.01
134 25 0.08
135 70 0.21
136 167 0.50
137 21 0.06
138 8 0.02
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.26
Consensus pattern (134 bp):
TTAAAAACCATAACCCCTTTAACTTAAAAACCCTAACCCTAAACTTAAAAACCCTAACCTAATTT
AATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT
AAAC
Found at i:8463412 original size:226 final size:222
Alignment explanation
Indices: 8463032--8463585 Score: 310
Period size: 226 Copynumber: 2.5 Consensus size: 222
8463022 AACCTAATTT
* * *
8463032 AATTAAAAACCTTAAACCCTAAACTTAAAAACCCTAACTCCCTTAACTTAAAAACTCTAACCTAA
1 AATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAC-CCCTTAACTTAAAAACCCTAACCTAA
* * * * *
8463097 TTAACTTTAAAACCCTAACCTAATTAAATTAAAAACCCT-AA-CCTAATTTAATTAAAAACCTTA
65 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCAT-
* * * * *
8463160 AACCCTAA---ATTTAAAAACCAT-AA-CCTAATTTAATTAAAAACCCTAAACC--CTAAACTTA
126 AA-CCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACACT-AACCAACTCAACTTA
* * *
8463218 AAAACTCTAA-CCTAATTTAATTAAAAACCCTAAACC-CTA
186 AAAACACTAACCCTAA---ACTTAAAAACCCT-AACCATTA
* * * * *
8463257 AACTTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCC
1 AA-TTAAAAACCCTAAACC--CTTAACTTAAAAACCCTAACCCCTTAACTTAAAAACCCTAACCT
** * * * *
8463321 CTTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AA-CCTAATTTAATTAAAAACCC
63 AATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCA
* * * * *
8463384 TAAACCCTAA---ACTTAAAAATCCT-AA-CCTAATTTAATTAAAAACCCTAAACC--CTAAACT
125 T-AA-CCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACACT-AACCAACTCAACT
* * *
8463442 TAAAAACACTAACCCCCTCAACTTAAAAACACTAACCCTTA
184 TAAAAACACTAA--CCCTAAACTTAAAAACCCTAACCATTA
* * * * * *
8463483 ACTTAAAAACCCT-AACCCTTAATTTAAAAACACTAAACCCTTAACTTAAAAATCCTAACC--CT
1 AATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTTAACTTAAAAACCCTAACCTAAT
*
8463545 TAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAA
66 TAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAA
8463586 TTAAATTAAT
Statistics
Matches: 293, Mismatches: 28, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
221 38 0.13
222 2 0.01
223 38 0.13
225 25 0.09
226 170 0.58
227 16 0.05
229 4 0.01
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (222 bp):
AATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTTAACTTAAAAACCCTAACCTAAT
TAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCATAACCT
AATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACACTAACCAACTCAACTTAAAAACACTAA
CCCTAAACTTAAAAACCCTAACCATTA
Found at i:8463447 original size:23 final size:22
Alignment explanation
Indices: 8463002--8463561 Score: 365
Period size: 23 Copynumber: 25.0 Consensus size: 22
8462992 AACCATTAAT
*
8463002 ACCCTTAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAA
* *
8463023 A-CCTAATTTAATTAAAAACCTTAA
1 ACCCTAA---ACTTAAAAACCCTAA
8463047 ACCCTAAACTTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAA
* * *
8463069 CTCCCTTAACTTAAAAACTCT-A
1 -ACCCTAAACTTAAAAACCCTAA
*
8463091 A-CCTAATTAACTTTAAAACCCT-A
1 ACCCT-A--AACTTAAAAACCCTAA
*
8463114 A-CCTAATTAAATTAAAAACCCT-A
1 ACCCT-A--AACTTAAAAACCCTAA
* *
8463137 A-CCTAATTTAATTAAAAACCTTAA
1 ACCCTAA---ACTTAAAAACCCTAA
* *
8463161 ACCCTAAATTTAAAAACCAT-A
1 ACCCTAAACTTAAAAACCCTAA
*
8463182 A-CCTAATTTAATTAAAAACCCTAA
1 ACCCTAA---ACTTAAAAACCCTAA
*
8463206 ACCCTAAACTTAAAAACTCT-A
1 ACCCTAAACTTAAAAACCCTAA
*
8463227 A-CCTAATTTAATTAAAAACCCTAA
1 ACCCTAA---ACTTAAAAACCCTAA
8463251 ACCCTAAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAA
*
8463272 A-CCTAATTAAATTAAAAACCCTAA
1 ACCCT-A--AACTTAAAAACCCTAA
8463296 ACCCTAAACTTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAA
* *
8463318 CCCCTTTAACTTAAAAACCCT-A
1 ACCC-TAAACTTAAAAACCCTAA
*
8463340 A-CCTAATTAAATTAAAAACCCT-A
1 ACCCT-A--AACTTAAAAACCCTAA
*
8463363 A-CCTAATTTAATTAAAAACCCTAA
1 ACCCTAA---ACTTAAAAACCCTAA
*
8463387 ACCCTAAACTTAAAAATCCT-A
1 ACCCTAAACTTAAAAACCCTAA
*
8463408 A-CCTAATTTAATTAAAAACCCTAA
1 ACCCTAA---ACTTAAAAACCCTAA
*
8463432 ACCCTAAACTTAAAAACACTAA
1 ACCCTAAACTTAAAAACCCTAA
* * *
8463454 CCCCCTCAACTTAAAAACACT-A
1 -ACCCTAAACTTAAAAACCCTAA
*
8463476 ACCCTTAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAA
* * *
8463497 ACCCTTAATTTAAAAACACTAA
1 ACCCTAAACTTAAAAACCCTAA
* *
8463519 ACCCTTAACTTAAAAATCCT-A
1 ACCCTAAACTTAAAAACCCTAA
*
8463540 ACCCTTAACTTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAA
8463562 CCTAATTTAA
Statistics
Matches: 445, Mismatches: 48, Indels: 91
0.76 0.08 0.16
Matches are distributed among these distances:
20 28 0.06
21 68 0.15
22 113 0.25
23 188 0.42
24 15 0.03
25 33 0.07
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.26
Consensus pattern (22 bp):
ACCCTAAACTTAAAAACCCTAA
Found at i:8463594 original size:23 final size:23
Alignment explanation
Indices: 8463544--8463595 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
8463534 ATCCTAACCC
* *
8463544 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAAACTAAA
*
8463568 TTAATTAAAAACCCTAAATTAAA
1 TTAATTAAAAACCCTAAACTAAA
8463591 TTAAT
1 TTAAT
8463596 AATTTTACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (23 bp):
TTAATTAAAAACCCTAAACTAAA
Found at i:8463731 original size:116 final size:116
Alignment explanation
Indices: 8463589--8463832 Score: 409
Period size: 116 Copynumber: 2.1 Consensus size: 116
8463579 CCCTAAATTA
* ** *
8463589 AATTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAACAAT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATG-TTTTGACTAGTACTAACAAT
*
8463654 TAATAATTTTATATAATTTGATAA-TTTTACTAATCATTAATACAATTTATC
65 TAATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
*
8463705 AATTAATAATTTTACATTCATATAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAATT
*
8463770 AATAATTTTATATAATTTGATAATTTTTTCTAACCATTAATACAATTTATC
66 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
8463821 AATTAATAATTT
1 AATTAATAATTT
8463833 CACAAACTTA
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
115 41 0.34
116 79 0.66
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (116 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAATT
AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
Found at i:8467063 original size:125 final size:125
Alignment explanation
Indices: 8466841--8467217 Score: 562
Period size: 125 Copynumber: 3.0 Consensus size: 125
8466831 CTCAAACATG
* * * * * *
8466841 CTACTGTAGTAAAAACGCGTCCAAGAGGGTGTGATTTTCACAAATTCTTCTCAAATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
*
8466906 CTAGAATCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
*
8466966 CTACTGTAGCAAAAGC-CAGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGTATCCT
1 CTACTGTAGCAAAAGCGC-GTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCT
8467030 GCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTC-AAAAAAATTATTTCTTCCATGAC
65 GCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
* *
8467090 CTACTGTAGCAAAAGCGCGTCCACTAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCATCCTA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* * * *** *
8467154 CTAGAAGCGATTTTATAGTATTTGATCAGAAATGTCAACTCGAAATTATTTCTTCCAGGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA-AAAAAATTATTTCTTCCATGAC
8467215 CTA
1 CTA
8467218 AAAACCCTAA
Statistics
Matches: 230, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
123 61 0.27
124 56 0.24
125 113 0.49
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
Found at i:8468453 original size:39 final size:40
Alignment explanation
Indices: 8468410--8468492 Score: 123
Period size: 39 Copynumber: 2.1 Consensus size: 40
8468400 AATTACTCAA
* * *
8468410 TTTTACTAATTTATTGCATAAAAATT-TTGAATTGTTGAT
1 TTTTACTAATTCATTGCATAAAAATTGTTAAATTGATGAT
*
8468449 TTTTACTAATTCATTGCATATAAATTGTTAAATTGATGAT
1 TTTTACTAATTCATTGCATAAAAATTGTTAAATTGATGAT
8468489 TTTT
1 TTTT
8468493 TTGGGTTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 24 0.62
40 15 0.38
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.52
Consensus pattern (40 bp):
TTTTACTAATTCATTGCATAAAAATTGTTAAATTGATGAT
Found at i:8470186 original size:25 final size:25
Alignment explanation
Indices: 8470115--8470193 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
8470105 GACACACCAC
* ** *
8470115 AGCTCGCATGAGCTTCCCAATATTC
1 AGCTCGCAAGAGCTTCCTGATATTT
* *
8470140 AACTCACAAGAGCTT-CTCGATATTT
1 AGCTCGCAAGAGCTTCCT-GATATTT
*
8470165 AGCTCGCAAGAGCTTCCTGATACTT
1 AGCTCGCAAGAGCTTCCTGATATTT
8470190 AGCT
1 AGCT
8470194 TTCATGAGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (25 bp):
AGCTCGCAAGAGCTTCCTGATATTT
Found at i:8475200 original size:23 final size:23
Alignment explanation
Indices: 8475173--8475216 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
8475163 GCAAATTAGA
*
8475173 AAAGAAATAAAAAGAAAAGAAAG
1 AAAGAAAGAAAAAGAAAAGAAAG
* *
8475196 AAAGAAAGAAAGAGAGAAGAA
1 AAAGAAAGAAAAAGAAAAGAA
8475217 GTTCACGGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (23 bp):
AAAGAAAGAAAAAGAAAAGAAAG
Found at i:8475943 original size:25 final size:25
Alignment explanation
Indices: 8475895--8475943 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8475885 TATAATTGAA
* * *
8475895 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
8475920 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
8475944 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:8483952 original size:31 final size:30
Alignment explanation
Indices: 8483928--8484343 Score: 444
Period size: 31 Copynumber: 13.6 Consensus size: 30
8483918 GTATATGTTT
* *
8483928 TATACATTGCTGAA-TTGATTTGTATAAAGA
1 TATACATTGCCGAATTTGATTTGTAT-ATGA
*
8483958 TATACATTGCCGAATTTGATTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* * *
8483989 TATACATTGCCAAAATTGATTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
*
8484020 TATACATTGCCGAATTTGATTTGTATATTGT
1 TATACATTGCCGAATTTGATTTGTATA-TGA
* *
8484051 TATATATTGCTGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* *
8484082 TATACATTACCGAA-TTGTTTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* *
8484112 TATACATTGTCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* *
8484143 TATATATTGCCAAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
*
8484174 TATACATTGTCGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* *
8484204 TATATATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATAT-GA
*
8484235 TATACATTACCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* * *
8484266 TATTCATTGCC-AAATTGATTTATATATAGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
* * **
8484296 AATACATTGCCAAATTTGATTCATATATGGA
1 TATACATTGCCGAATTTGATTTGTATAT-GA
*
8484327 TATACATTGCTGAATTT
1 TATACATTGCCGAATTT
8484344 TTTTGAGCAT
Statistics
Matches: 329, Mismatches: 50, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
30 93 0.28
31 235 0.71
32 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (30 bp):
TATACATTGCCGAATTTGATTTGTATATGA
Found at i:8484131 original size:123 final size:122
Alignment explanation
Indices: 8483928--8484343 Score: 503
Period size: 123 Copynumber: 3.4 Consensus size: 122
8483918 GTATATGTTT
* *
8483928 TATACATTGCTGAATTGATTTGTATAAAGATATACATTGCCGAATTTGATTTGTTTATAGATATA
1 TATACATTGCTGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATA
* * * * *
8483993 CATTGCCAAAATTGATTTGTTTATAGATATACATTGCCGAATTTGATTTGTATATTGT
66 CATTGCCGAATTTGATTTGTATATGGATATACATTGCC-AATTTGATTTGTATATTGA
* * * *
8484051 TATATATTGCTGAATTTGATTTGTATATGGATATACATTACCGAA-TTGTTTTGTATATAGATAT
1 TATACATTGCTGAA-TTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATAT
* * * *
8484115 ACATTGTCGAATTTGATTTGTATATGGTTATATATTGCCAAATTTGATTTGTATATGGA
65 ACATTGCCGAATTTGATTTGTATATGGATATACATTGCC-AATTTGATTTGTATATTGA
* * *
8484174 TATACATTG-TCGAATTGATTTGTATATAGATATATATTGCCGAATTTGATTTGTATATGGTTAT
1 TATACATTGCT-GAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATAT
* * * * *
8484238 ACATTACCGAATTTGATTTGTATATGGATATTCATTGCCAAATTGATTTATATATAGA
65 ACATTGCCGAATTTGATTTGTATATGGATATACATTGCCAATTTGATTTGTATATTGA
* ** ** * *
8484296 AATACATTGCCAAATTTGATTCATATATGGATATACATTGCTGAATTT
1 TATACATTGCTGAA-TTGATTTGTATATAGATATACATTGCCGAATTT
8484344 TTTTGAGCAT
Statistics
Matches: 249, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
122 54 0.22
123 168 0.67
124 27 0.11
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (122 bp):
TATACATTGCTGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATA
CATTGCCGAATTTGATTTGTATATGGATATACATTGCCAATTTGATTTGTATATTGA
Found at i:8484358 original size:92 final size:92
Alignment explanation
Indices: 8483928--8484343 Score: 564
Period size: 92 Copynumber: 4.5 Consensus size: 92
8483918 GTATATGTTT
* ** * * *
8483928 TATACATTGCTGAA-TTGATTTGTATAAAGATATACATTGCCGAATTTGATTTGTTTATAGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
*
8483992 ACATTGCCAAAATTGATTTGTTTATAGA
66 ACATTGCC-AAATTGATTTGTATATAGA
* * *
8484020 TATACATTGCCGAATTTGATTTGTATATTGTTATATATTGCTGAATTTGATTTGTATATGGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
* * *
8484085 ACATTACCGAATTGTTTTGTATATAGA
66 ACATTGCCAAATTGATTTGTATATAGA
* * *
8484112 TATACATTGTCGAATTTGATTTGTATATGGTTATATATTGCCAAATTTGATTTGTATATGGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
* *
8484177 ACATTGTCGAATTGATTTGTATATAGA
66 ACATTGCCAAATTGATTTGTATATAGA
* *
8484204 TATATATTGCCGAATTTGATTTGTATATGGTTATACATTACCGAATTTGATTTGTATATGGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
* *
8484269 TCATTGCCAAATTGATTTATATATAGA
66 ACATTGCCAAATTGATTTGTATATAGA
* * ** * *
8484296 AATACATTGCCAAATTTGATTCATATATGGATATACATTGCTGAATTT
1 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTT
8484344 TTTTGAGCAT
Statistics
Matches: 287, Mismatches: 36, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
92 237 0.83
93 50 0.17
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (92 bp):
TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
ACATTGCCAAATTGATTTGTATATAGA
Found at i:8491196 original size:31 final size:30
Alignment explanation
Indices: 8491172--8491714 Score: 585
Period size: 31 Copynumber: 17.7 Consensus size: 30
8491162 GTATATGTTT
* * **
8491172 TATACATTGCCAAATTAATTTGTATAAAGA
1 TATACATTGCCAATTTGATTTGTATATGGA
* * * *
8491202 TATACATTGCTGAATTTGATTTTTTTATAGA
1 TATACATTGC-CAATTTGATTTGTATATGGA
* * *
8491233 TATACATTGCCGAAATTGATTTGTTTATAGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
* *
8491264 TATACATTGCCGAATTTGAATTGTATATGGT
1 TATACATTGCC-AATTTGATTTGTATATGGA
* *
8491295 TATATATTGTCGAATTTGATTTGTATATGGA
1 TATACATTG-CCAATTTGATTTGTATATGGA
*
8491326 TATACATTGCCGAATTTGGTTTGTATATGGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
*
8491357 TATACATTGCCGAA-TTGATTTGTATATAGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
* *
8491387 TATATATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCC-AATTTGATTTGTATATGGA
* *
8491418 TATATATTGCCGAATTTGATTTGTAAATGGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
* *
8491449 TATACATTGTCGAA-TTGATTTGTATATAGA
1 TATACATTG-CCAATTTGATTTGTATATGGA
* * *
8491479 TATACATTGTCGAATTTGATTTGTATGTGGT
1 TATACATTG-CCAATTTGATTTGTATATGGA
8491510 TATACATTGCCGAA-TTGATTTGTATATGGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
*
8491540 TATACATTGCCGAA-TTGATTTGTATATAGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
* *
8491570 TATATATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCC-AATTTGATTTGTATATGGA
8491601 TATACATTGCCGAATTTGATTTGTATATGGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
* * *
8491632 TATTCATTGCCGAA-TTGATTTATATATAGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
*
8491662 TATACATTGCCAAATTTGATTCGTATATGGA
1 TATACATTGCC-AATTTGATTTGTATATGGA
*
8491693 TATATATTGCCGAA-TTGATTTG
1 TATACATTGCC-AATTTGATTTG
8491715 AGCATTAGAT
Statistics
Matches: 448, Mismatches: 55, Indels: 20
0.86 0.11 0.04
Matches are distributed among these distances:
30 156 0.35
31 290 0.65
32 2 0.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (30 bp):
TATACATTGCCAATTTGATTTGTATATGGA
Found at i:8491410 original size:61 final size:62
Alignment explanation
Indices: 8491172--8491714 Score: 722
Period size: 61 Copynumber: 8.9 Consensus size: 62
8491162 GTATATGTTT
* * ** * * * *
8491172 TATACATTGCC-AAATTAATTTGTATAAAGATATACATTGCTGAATTTGATTTTTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * * * *
8491233 TATACATTGCCGAAATTGATTTGTTTATAGATATACATTGCCGAATTTGAATTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * *
8491295 TATATATTGTCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGGTTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * *
8491357 TATACATTGCCGAA-TTGATTTGTATATAGATATATATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * * *
8491418 TATATATTGCCGAATTTGATTTGTAAATGGATATACATTGTCGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * *
8491479 TATACATTGTCGAATTTGATTTGTATGTGGTTATACATTGCCGAA-TTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * *
8491540 TATACATTGCCGAA-TTGATTTGTATATAGATATATATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * *
8491601 TATACATTGCCGAATTTGATTTGTATATGGATATTCATTGCCGAA-TTGATTTATATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
* * *
8491662 TATACATTGCCAAATTTGATTCGTATATGGATATATATTGCCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTG
8491715 AGCATTAGAT
Statistics
Matches: 424, Mismatches: 54, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
60 26 0.06
61 238 0.56
62 160 0.38
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (62 bp):
TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCGAATTTGATTTGTATATGGA
Found at i:8491427 original size:92 final size:92
Alignment explanation
Indices: 8491172--8491714 Score: 784
Period size: 92 Copynumber: 5.9 Consensus size: 92
8491162 GTATATGTTT
* * * * * * *
8491172 TATACATTGCCAAATTAATTTGTATAAAGATATACATTGCTGAATTTGATTTTTTTATAGATATA
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATA
* * *
8491237 CATTGCCGAAATTGATTTGTTTATAGA
66 CATTGCCGAATTTGATTTGTATATGGA
* * * * *
8491264 TATACATTGCCGAATTTGAATTGTATATGGTTATATATTGTCGAATTTGATTTGTATATGGATAT
1 TATACATTGCCGAA-TTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATAT
*
8491329 ACATTGCCGAATTTGGTTTGTATATGGA
65 ACATTGCCGAATTTGATTTGTATATGGA
* *
8491357 TATACATTGCCGAATTGATTTGTATATAGATATATATTGCCGAATTTGATTTGTATATGGTTATA
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATA
* *
8491422 TATTGCCGAATTTGATTTGTAAATGGA
66 CATTGCCGAATTTGATTTGTATATGGA
* * * *
8491449 TATACATTGTCGAATTGATTTGTATATAGATATACATTGTCGAATTTGATTTGTATGTGGTTATA
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATA
8491514 CATTGCCGAA-TTGATTTGTATATGGA
66 CATTGCCGAATTTGATTTGTATATGGA
* *
8491540 TATACATTGCCGAATTGATTTGTATATAGATATATATTGCCGAATTTGATTTGTATATGGTTATA
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATA
8491605 CATTGCCGAATTTGATTTGTATATGGA
66 CATTGCCGAATTTGATTTGTATATGGA
* * * *
8491632 TATTCATTGCCGAATTGATTTATATATAGATATACATTGCCAAATTTGATTCGTATATGGATATA
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATA
*
8491697 TATTGCCGAA-TTGATTTG
66 CATTGCCGAATTTGATTTG
8491715 AGCATTAGAT
Statistics
Matches: 408, Mismatches: 41, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
91 94 0.23
92 237 0.58
93 77 0.19
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (92 bp):
TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATGGATATA
CATTGCCGAATTTGATTTGTATATGGA
Found at i:8495147 original size:40 final size:40
Alignment explanation
Indices: 8495103--8495326 Score: 253
Period size: 40 Copynumber: 5.6 Consensus size: 40
8495093 GCCACTCATT
*
8495103 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
8495143 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
8495183 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
8495223 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
8495262 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
8495303 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
8495327 ACATCATTCG
Statistics
Matches: 160, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 114 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:8495207 original size:80 final size:80
Alignment explanation
Indices: 8495103--8495327 Score: 287
Period size: 80 Copynumber: 2.8 Consensus size: 80
8495093 GCCACTCATT
* *
8495103 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
8495168 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
8495183 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
8495246 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * * *
8495262 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
8495325 GGA
64 GGA
8495328 CATCATTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 4 0.03
79 54 0.43
80 66 0.52
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:8495311 original size:119 final size:120
Alignment explanation
Indices: 8495105--8495327 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
8495095 CACTCATTCA
*
8495105 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
8495170 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * ** *
8495225 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCTGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
8495287 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
8495328 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:8496522 original size:56 final size:56
Alignment explanation
Indices: 8496455--8496574 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
8496445 TATTAGTTTA
8496455 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
8496511 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
8496567 TTGCCCAT
1 TTGCCCAT
8496575 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:8503513 original size:35 final size:35
Alignment explanation
Indices: 8503474--8503542 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
8503464 GCTAATACTT
* *
8503474 TGATTCACATGTTAAGTATGTTATTATTCTGATTA
1 TGATTCACATGTTAAGCATGCTATTATTCTGATTA
* *
8503509 TGATTCACATGTTGAGCATGCTATTATTTTGATT
1 TGATTCACATGTTAAGCATGCTATTATTCTGATT
8503543 CTAAATCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (35 bp):
TGATTCACATGTTAAGCATGCTATTATTCTGATTA
Found at i:8503564 original size:35 final size:35
Alignment explanation
Indices: 8503478--8503564 Score: 86
Period size: 35 Copynumber: 2.5 Consensus size: 35
8503468 ATACTTTGAT
* * *
8503478 TCACATGTTAAGT-ATGTTATTATTCTGATTATGAT
1 TCACATGTTAA-TCATGCTATTATTCTGATTATAAA
* * * *
8503513 TCACATGTTGAGCATGCTATTATTTTGATTCTAAA
1 TCACATGTTAATCATGCTATTATTCTGATTATAAA
*
8503548 TCCCATGTTAATCATGC
1 TCACATGTTAATCATGC
8503565 CACCATGTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (35 bp):
TCACATGTTAATCATGCTATTATTCTGATTATAAA
Found at i:8503953 original size:16 final size:15
Alignment explanation
Indices: 8503928--8503957 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8503918 ATTAAGTTAA
8503928 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
8503943 TTAACCTAAATGCAA
1 TTAA-CTAAATGCAA
8503958 ATGAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.27
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:8505915 original size:3 final size:3
Alignment explanation
Indices: 8505907--8505939 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8505897 TTCTCCTCTC
8505907 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8505940 TTTTTATCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8513333 original size:7 final size:8
Alignment explanation
Indices: 8513302--8513331 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
8513292 CAAATATGAA
8513302 AAAAAAAG
1 AAAAAAAG
8513310 AAAAAAAG
1 AAAAAAAG
8513318 AAAAAAAG
1 AAAAAAAG
8513326 AAAAAA
1 AAAAAA
8513332 GATTGAGCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:8515364 original size:18 final size:18
Alignment explanation
Indices: 8515333--8515367 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8515323 ATTATTACAA
*
8515333 AATTTATAATTTTTAAAT
1 AATTTATAAATTTTAAAT
*
8515351 AATTTTTAAATTTTAAA
1 AATTTATAAATTTTAAA
8515368 AGGCCTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTTATAAATTTTAAAT
Found at i:8515639 original size:19 final size:18
Alignment explanation
Indices: 8515617--8515718 Score: 73
Period size: 20 Copynumber: 5.3 Consensus size: 18
8515607 TTAAAATGCG
8515617 TTAAAATTGATAAAAATTA
1 TTAAAATT-ATAAAAATTA
* *
8515636 TTAAAAATCATAAAAGGTTA
1 TT-AAAATTATAAAA-ATTA
*
8515656 TAGAAAATTATAAAAA-TA
1 T-TAAAATTATAAAAATTA
*
8515674 TATAAATATTATAAAAATATTT
1 T-TAAA-ATTAT-AAAA-ATTA
8515696 TTAAACATTATAAAAA-TA
1 TTAAA-ATTATAAAAATTA
8515714 TTAAA
1 TTAAA
8515719 TTGAGAAATG
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
18 13 0.19
19 14 0.21
20 28 0.42
21 10 0.15
22 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (18 bp):
TTAAAATTATAAAAATTA
Found at i:8515686 original size:9 final size:9
Alignment explanation
Indices: 8515619--8515691 Score: 74
Period size: 10 Copynumber: 7.6 Consensus size: 9
8515609 AAAATGCGTT
8515619 AAAATTGATA
1 AAAATT-ATA
8515629 AAAATTATTA
1 AAAATTA-TA
*
8515639 AAAATCATA
1 AAAATTATA
*
8515648 AAAGGTTATA
1 AAA-ATTATA
8515658 GAAAATTATA
1 -AAAATTATA
8515668 AAAATATATA
1 AAAAT-TATA
*
8515678 AATATTATA
1 AAAATTATA
8515687 AAAAT
1 AAAAT
8515692 ATTTTTAAAC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
9 19 0.36
10 31 0.58
11 3 0.06
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:8515705 original size:21 final size:21
Alignment explanation
Indices: 8515653--8515715 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
8515643 TCATAAAAGG
*
8515653 TTATAGAAAATTATAAAAATA-
1 TTATA-AACATTATAAAAATAT
*
8515674 -TATAAATATTATAAAAATAT
1 TTATAAACATTATAAAAATAT
*
8515694 TTTTAAACATTATAAAAATAT
1 TTATAAACATTATAAAAATAT
8515715 T
1 T
8515716 AAATTGAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 14 0.38
20 4 0.11
21 19 0.51
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TTATAAACATTATAAAAATAT
Found at i:8515793 original size:17 final size:17
Alignment explanation
Indices: 8515775--8515816 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
8515765 TATAAATTTT
8515775 AAAAATAATTAAAAATTA
1 AAAAAT-ATTAAAAATTA
8515793 AAAAATATTAAAAA-TA
1 AAAAATATTAAAAATTA
*
8515809 AAATATAT
1 AAAAATAT
8515817 AAATTATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.39
17 8 0.35
18 6 0.26
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTAAAAATTA
Found at i:8515828 original size:23 final size:22
Alignment explanation
Indices: 8515802--8515847 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 22
8515792 AAAAAATATT
8515802 AAAAATAAAATATATAAATTATGAA
1 AAAAATAAAA-ATA-AAATTATG-A
8515827 AAAAATAAAAATAAAATTATG
1 AAAAATAAAAATAAAATTATG
8515848 GTCTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.38
24 3 0.14
25 10 0.48
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAAATAAAAATAAAATTATGA
Found at i:8515915 original size:20 final size:21
Alignment explanation
Indices: 8515856--8515968 Score: 68
Period size: 20 Copynumber: 5.8 Consensus size: 21
8515846 TGGTCTTTTT
* *
8515856 AAATATAT-AAAATTATTA-A
1 AAATATTTAAAAAATATTATA
8515875 AAATATTTAAAAAATCA--ATA
1 AAATATTTAAAAAAT-ATTATA
8515895 AAAT-TTTAAAAAATATTATA
1 AAATATTTAAAAAATATTATA
* *
8515915 AAATGTTATAAAAAGTA-TA-A
1 AAATATT-TAAAAAATATTATA
8515935 AAATA--TAAAATAA-ATTA-A
1 AAATATTTAAAA-AATATTATA
* *
8515953 AAATATATGAAAAATA
1 AAATATTTAAAAAATA
8515969 ATAAAAAACT
Statistics
Matches: 76, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
17 6 0.08
18 10 0.13
19 20 0.26
20 27 0.36
21 5 0.07
22 8 0.11
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (21 bp):
AAATATTTAAAAAATATTATA
Found at i:8515918 original size:10 final size:10
Alignment explanation
Indices: 8515856--8515946 Score: 68
Period size: 10 Copynumber: 9.5 Consensus size: 10
8515846 TGGTCTTTTT
8515856 AAATA-TATA
1 AAATATTATA
8515865 AAATTATTA-A
1 AAA-TATTATA
8515875 AAATATT-TA
1 AAATATTATA
* *
8515884 AAAAATCAATA
1 AAATAT-TATA
* *
8515895 AAATTTTAAA
1 AAATATTATA
8515905 AAATATTATA
1 AAATATTATA
*
8515915 AAATGTTATA
1 AAATATTATA
*
8515925 AAA-AGTATA
1 AAATATTATA
8515934 AAA-A-TATA
1 AAATATTATA
8515942 AAATA
1 AAATA
8515947 AATTAAAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
8 7 0.11
9 22 0.34
10 28 0.43
11 8 0.12
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (10 bp):
AAATATTATA
Found at i:8515927 original size:30 final size:30
Alignment explanation
Indices: 8515856--8515917 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
8515846 TGGTCTTTTT
*
8515856 AAATATATAAAATTATTAAAAATATTTAAA
1 AAATCTATAAAATTATTAAAAATATTTAAA
*
8515886 AAATCAATAAAATT-TTAAAAAATATTATAAA
1 AAATCTATAAAATTATT-AAAAATATT-TAAA
8515917 A
1 A
8515918 TGTTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 2 0.07
30 21 0.75
31 5 0.18
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (30 bp):
AAATCTATAAAATTATTAAAAATATTTAAA
Found at i:8517698 original size:95 final size:95
Alignment explanation
Indices: 8517554--8517744 Score: 373
Period size: 95 Copynumber: 2.0 Consensus size: 95
8517544 TTTTGAAATA
8517554 AAAAATTAAATTATTTTTGAGTAAAATTGAAAATTGAAAAAAATTGACAAAATGATTTCTCAAAT
1 AAAAATTAAATTATTTTTGAGTAAAATTGAAAATTGAAAAAAATTGACAAAATGATTTCTCAAAT
8517619 GAAGTCTAAGAGATAAAATTTTCAATCTTT
66 GAAGTCTAAGAGATAAAATTTTCAATCTTT
*
8517649 AAAAATTAAATTATTTTTGAGTAAAATTTAAAATTGAAAAAAATTGACAAAATGATTTCTCAAAT
1 AAAAATTAAATTATTTTTGAGTAAAATTGAAAATTGAAAAAAATTGACAAAATGATTTCTCAAAT
8517714 GAAGTCTAAGAGATAAAATTTTCAATCTTT
66 GAAGTCTAAGAGATAAAATTTTCAATCTTT
8517744 A
1 A
8517745 CTTTGAACTC
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (95 bp):
AAAAATTAAATTATTTTTGAGTAAAATTGAAAATTGAAAAAAATTGACAAAATGATTTCTCAAAT
GAAGTCTAAGAGATAAAATTTTCAATCTTT
Found at i:8519374 original size:59 final size:61
Alignment explanation
Indices: 8519303--8519419 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
8519293 ATCACTTTAA
* * * *
8519303 TATTAAATTAATATAATATTTA-T-CAAGGTAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAACATTAGATTAAATTTAATATTAAATCT
*
8519362 TATTAAAATAATAGAATATTTATCTACAAGATAAACATTAGCTTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAACATTAGATTAAATTTAATATTAA
8519420 GATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 20 0.40
61 1 0.02
62 29 0.58
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (61 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAACATTAGATTAAATTTAATATTAAATCT
Found at i:8519490 original size:37 final size:36
Alignment explanation
Indices: 8519430--8519505 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 36
8519420 GATAATCACT
*
8519430 TTAATATTAAATTAATAAAAAACTATTAAGATAAGTA
1 TTAATATTAAATTAATAAAAAACTATTAAAATAA-TA
**
8519467 TTAA-ATTAAATTTAATATTAAACTATTAAAATAATA
1 TTAATATTAAA-TTAATAAAAAACTATTAAAATAATA
8519503 TTA
1 TTA
8519506 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 11 0.31
37 24 0.69
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAAAACTATTAAAATAATA
Found at i:8522905 original size:206 final size:206
Alignment explanation
Indices: 8522549--8522937 Score: 681
Period size: 206 Copynumber: 1.9 Consensus size: 206
8522539 CTAATGAATG
8522549 TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTATA
1 TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTATA
*
8522614 TAGTGCATTTAGATGACTTGCATGATTCATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
66 TAGTGCATTTAGATGACTTACATGATTCATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
* * *
8522679 TTGTTGTGACATAAAAAACTAGGATGTGCTAGCATGAA-CATTTTGTATAAATTTGGAGGAATTG
131 TTGTTGTGACATAAAAAACTAAGACGTGCTAGCAT-AAGCATTTCGTATAAATTTGGAGGAATTG
8522743 GAGGACATAGGA
195 GAGGACATAGGA
* *
8522755 TAAAGTAATTGACATTGTGTTTAATAAGATTATGCTTGTAGGACATAGGATAGGAAATACTTATA
1 TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTATA
* *
8522820 TAGTGCATTTAGATGACTTATATGATTCATTCATATGCCTTGTTGCTAAAAATGAAAATAACTTT
66 TAGTGCATTTAGATGACTTACATGATTCATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
*
8522885 TTGTTGTGACATAGAAAACTAAGACGTGCTAGCATAAGCATTTCGTATAAATT
131 TTGTTGTGACATAAAAAACTAAGACGTGCTAGCATAAGCATTTCGTATAAATT
8522938 AGCTAAAAAT
Statistics
Matches: 173, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
205 2 0.01
206 171 0.99
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (206 bp):
TAAAGTAATTGACATTGTGTTTAATAAAATTATGCTTGTAGGACATAGGATAGAAAATACTTATA
TAGTGCATTTAGATGACTTACATGATTCATTCATATGCCTTGTTGCTAAAAATGAAAATAACTCT
TTGTTGTGACATAAAAAACTAAGACGTGCTAGCATAAGCATTTCGTATAAATTTGGAGGAATTGG
AGGACATAGGA
Found at i:8526497 original size:27 final size:27
Alignment explanation
Indices: 8526467--8526523 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
8526457 CTGATGCCTC
* *
8526467 CTTGTTAAACCCGTCTAGTTGGTTAAG
1 CTTGTCAAACCCGTCAAGTTGGTTAAG
8526494 CTTGTCAAACCCGTCAAGTTGGTTAAG
1 CTTGTCAAACCCGTCAAGTTGGTTAAG
8526521 CTT
1 CTT
8526524 ATCTTTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
CTTGTCAAACCCGTCAAGTTGGTTAAG
Found at i:8527278 original size:22 final size:24
Alignment explanation
Indices: 8527235--8527278 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8527225 TGATAATATG
8527235 TTTTGATATAACAAATTAAAGTGT
1 TTTTGATATAACAAATTAAAGTGT
*
8527259 TTTTGA-ATAA-AATTTAAAGT
1 TTTTGATATAACAAATTAAAGT
8527279 TGAAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGT
Found at i:8528657 original size:12 final size:13
Alignment explanation
Indices: 8528635--8528663 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8528625 TATATTATTT
8528635 TAATAATTTGTAA
1 TAATAATTTGTAA
8528648 TAAT-ATTTGTAA
1 TAATAATTTGTAA
8528660 TAAT
1 TAAT
8528664 TTTTTACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TAATAATTTGTAA
Found at i:8528969 original size:10 final size:10
Alignment explanation
Indices: 8528954--8528995 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
8528944 TATATTTTTT
*
8528954 ATTTTTTATG
1 ATTTTTAATG
8528964 ATTTTTAAT-
1 ATTTTTAATG
*
8528973 ATTTTTATTG
1 ATTTTTAATG
8528983 ATTTTTAATG
1 ATTTTTAATG
8528993 ATT
1 ATT
8528996 ATATATTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 8 0.29
10 20 0.71
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (10 bp):
ATTTTTAATG
Found at i:8528977 original size:19 final size:19
Alignment explanation
Indices: 8528947--8528991 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
8528937 ATGTATATAT
*
8528947 ATTTTTTAT-TTTTTA-TG
1 ATTTTTAATATTTTTATTG
8528964 ATTTTTAATATTTTTATTG
1 ATTTTTAATATTTTTATTG
8528983 ATTTTTAAT
1 ATTTTTAAT
8528992 GATTATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.32
18 6 0.24
19 11 0.44
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
ATTTTTAATATTTTTATTG
Found at i:8539648 original size:21 final size:22
Alignment explanation
Indices: 8539616--8539663 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
8539606 TACTTCATTC
8539616 TATTTTTATGAAGTTTTT-ATAA
1 TATTTTTATGAA-TTTTTGATAA
8539638 TATTTTT-TGAATTTTTGATAA
1 TATTTTTATGAATTTTTGATAA
8539659 T-TTTT
1 TATTTT
8539664 AAATTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.36
21 9 0.36
22 7 0.28
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (22 bp):
TATTTTTATGAATTTTTGATAA
Found at i:8540627 original size:6 final size:6
Alignment explanation
Indices: 8540616--8540671 Score: 62
Period size: 6 Copynumber: 9.2 Consensus size: 6
8540606 AAAAGTTGTG
*
8540616 ATAATT ATAATT ATAATT ATATTT ATAATT ATAAGTT CAT--TT ATAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAA-TT -ATAATT ATAATT
8540664 ATTAATT A
1 A-TAATT A
8540672 AAAAAGTAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
6 29 0.67
7 8 0.19
8 2 0.05
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (6 bp):
ATAATT
Found at i:8540643 original size:18 final size:18
Alignment explanation
Indices: 8540620--8540671 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
8540610 GTTGTGATAA
*
8540620 TTATAATTATAATTATAT
1 TTATAATTATAATTACAT
8540638 TTATAATTATAAGTT-CAT
1 TTATAATTATAA-TTACAT
8540656 TTATAATTATTAATTA
1 TTATAATTA-TAATTA
8540672 AAAAAGTAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (18 bp):
TTATAATTATAATTACAT
Found at i:8554037 original size:28 final size:28
Alignment explanation
Indices: 8553997--8554054 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
8553987 ATATGAAATT
*
8553997 AAAGCTTATTGAGTCTAGTTTCTCATAG
1 AAAGCTTATTGAGTCTAGTGTCTCATAG
8554025 AAAGCTTATTGAGTCTAGTGTCTCATAG
1 AAAGCTTATTGAGTCTAGTGTCTCATAG
8554053 AA
1 AA
8554055 GAAATGGTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (28 bp):
AAAGCTTATTGAGTCTAGTGTCTCATAG
Found at i:8574251 original size:16 final size:17
Alignment explanation
Indices: 8574230--8574262 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8574220 ATAAAAAGAG
*
8574230 TTCTTTTTCATT-TTAA
1 TTCTTTTCCATTATTAA
8574246 TTCTTTTCCATTATTAA
1 TTCTTTTCCATTATTAA
8574263 ACTTTCACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTTTCCATTATTAA
Found at i:8574363 original size:40 final size:40
Alignment explanation
Indices: 8574318--8574434 Score: 162
Period size: 40 Copynumber: 2.9 Consensus size: 40
8574308 GTTTGAATAA
*
8574318 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTATAT
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTATAT
* * * *
8574358 AAAACGCCGTTAAAGATCGAGAATTAGCAGTGCTTTATAT
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTATAT
* * *
8574398 AAAAAGCCGCTAAAGATCGGGCATTAGCGACGCTTTA
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTA
8574435 AGGAAAACGC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTATAT
Found at i:8574542 original size:41 final size:41
Alignment explanation
Indices: 8574485--8574838 Score: 523
Period size: 41 Copynumber: 8.6 Consensus size: 41
8574475 TTTTGACCTT
*
8574485 TCAGGCCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
1 TCAGGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
*
8574526 TCAGGGCTGTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
1 TCAGGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
** * *
8574567 TCAGGGGCTTTAATGGCGTTTTTGGAGTAGCGTCGCTAATGC
1 TCA-GGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
*
8574609 TCAGGGCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATGC
1 TCAGGGCTTTAGCGGCG-TTTTTGGAGAAGCGCCGCTAATGC
* *
8574651 TCAGGGATTTAGCAGCGTTTTTGGAGAAGCGCCGCTAATGC
1 TCAGGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
8574692 TCAGGGCTTTAGCGGCGTTTTTGGA-AAGGCGCCGCTAATGC
1 TCAGGGCTTTAGCGGCGTTTTTGGAGAA-GCGCCGCTAATGC
* * *
8574733 TCAGGGGATTTAGCGCCGTTTTTGGAGAAGCGCCGTTAATGC
1 TCA-GGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
* *
8574775 TCAGGGCCTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAATGC
1 TCAGGGCTTTAGCGGCGTTTTT-GGAGAAGCGCCGCTAATGC
8574817 TCA-GGCTTTAGCGGCGTTTTTG
1 TCAGGGCTTTAGCGGCGTTTTTG
8574839 TAAAAGCACC
Statistics
Matches: 281, Mismatches: 26, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
40 3 0.01
41 149 0.53
42 127 0.45
43 2 0.01
ACGTcount: A:0.18, C:0.21, G:0.33, T:0.28
Consensus pattern (41 bp):
TCAGGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGC
Found at i:8574630 original size:83 final size:82
Alignment explanation
Indices: 8574492--8574838 Score: 534
Period size: 83 Copynumber: 4.2 Consensus size: 82
8574482 CTTTCAGGCC
* *
8574492 TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTGTAGCGGCGTTTTTGGAGAAGCG
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGAAAAGCG
*
8574557 CCGCTAATGCTCAGGGGC
66 CCGCTAATGCTCA-GGGA
** * *
8574575 TTTAATGGCGTTTTTGGAGTAGCGTCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTTGGAAAAGC
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCG-TTTTTGGAAAAGC
8574640 GCCGCTAATGCTCAGGGA
65 GCCGCTAATGCTCAGGGA
* *
8574658 TTTAGCAGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGAAAGGCG
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGAAAAGCG
8574723 CCGCTAATGCTCAGGGGA
66 CCGCTAATGCTCA-GGGA
* * *
8574741 TTTAGCGCCGTTTTTGGAGAAGCGCCGTTAATGCTCAGGGCCTTAGCGGCGTTTTTGGGAAAAGC
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT-GGAAAAGC
*
8574806 GCCGCTAATGCTCA-GGC
65 GCCGCTAATGCTCAGGGA
8574823 TTTAGCGGCGTTTTTG
1 TTTAGCGGCGTTTTTG
8574839 TAAAAGCACC
Statistics
Matches: 241, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
82 43 0.18
83 151 0.63
84 47 0.20
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGAAAAGCG
CCGCTAATGCTCAGGGA
Found at i:8575246 original size:7 final size:7
Alignment explanation
Indices: 8575158--8575287 Score: 75
Period size: 7 Copynumber: 18.4 Consensus size: 7
8575148 TATCTCTATA
*
8575158 GTTTAAG
1 GTTTATG
*
8575165 GTTTTTG
1 GTTTATG
*
8575172 GTTTAGG
1 GTTTATG
*
8575179 GTATATG
1 GTTTATG
8575186 GTTTA-G
1 GTTTATG
*
8575192 AGTTTAAG
1 -GTTTATG
*
8575200 GTTAATG
1 GTTTATG
*
8575207 GATTATGG
1 GTTTAT-G
*
8575215 GTTTAGG
1 GTTTATG
*
8575222 GGTTATG
1 GTTTATG
**
8575229 GTTTACA
1 GTTTATG
8575236 GTTTATG
1 GTTTATG
*
8575243 GTTTAAG
1 GTTTATG
8575250 GTTTA-G
1 GTTTATG
*
8575256 GATTTAGG
1 G-TTTATG
* *
8575264 GGTTGTG
1 GTTTATG
8575271 GTTTATG
1 GTTTATG
*
8575278 GTTTAAG
1 GTTTATG
8575285 GTT
1 GTT
8575288 ATAGATTAAG
Statistics
Matches: 91, Mismatches: 27, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
6 3 0.03
7 80 0.88
8 8 0.09
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (7 bp):
GTTTATG
Found at i:8575275 original size:35 final size:34
Alignment explanation
Indices: 8575236--8575339 Score: 120
Period size: 34 Copynumber: 3.0 Consensus size: 34
8575226 ATGGTTTACA
* *
8575236 GTTTATGGTTTAAGGTTTAGGATTTAGGGGTTGTG
1 GTTTATGGTTTAAGGTTTAGGA-TTAAGGGTTGAG
8575271 GTTTATGGTTTAAGGTTATA-GATTAAGGGTTGAG
1 GTTTATGGTTTAAGGTT-TAGGATTAAGGGTTGAG
* * * **
8575305 GTTTAAGGTTTAGGGGTTAGGGGTAAGGGTTGAG
1 GTTTATGGTTTAAGGTTTAGGATTAAGGGTTGAG
8575339 G
1 G
8575340 GTTAAGAGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
33 2 0.03
34 37 0.62
35 19 0.32
36 2 0.03
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.39
Consensus pattern (34 bp):
GTTTATGGTTTAAGGTTTAGGATTAAGGGTTGAG
Found at i:8575315 original size:7 final size:7
Alignment explanation
Indices: 8575158--8575316 Score: 51
Period size: 7 Copynumber: 22.7 Consensus size: 7
8575148 TATCTCTATA
8575158 GTTTAAG
1 GTTTAAG
**
8575165 GTTTTTG
1 GTTTAAG
*
8575172 GTTTAGG
1 GTTTAAG
* *
8575179 GTATATG
1 GTTTAAG
8575186 GTTT-AG
1 GTTTAAG
8575192 AGTTTAAG
1 -GTTTAAG
8575200 G-TTAATG
1 GTTTAA-G
* *
8575207 GATTATGG
1 GTTTA-AG
*
8575215 GTTTAGG
1 GTTTAAG
* *
8575222 GGTTATG
1 GTTTAAG
8575229 GTTTACA-
1 GTTTA-AG
*
8575236 GTTTATG
1 GTTTAAG
8575243 GTTTAAG
1 GTTTAAG
8575250 GTTT-AG
1 GTTTAAG
*
8575256 GATTTAGG
1 G-TTTAAG
* **
8575264 GGTTGTG
1 GTTTAAG
*
8575271 GTTTATG
1 GTTTAAG
8575278 GTTTAAG
1 GTTTAAG
8575285 G-TTATA-
1 GTTTA-AG
*
8575291 GATTAAG
1 GTTTAAG
* *
8575298 GGTTGAG
1 GTTTAAG
8575305 GTTTAAG
1 GTTTAAG
8575312 GTTTA
1 GTTTA
8575317 GGGGTTAGGG
Statistics
Matches: 113, Mismatches: 27, Indels: 24
0.69 0.16 0.15
Matches are distributed among these distances:
6 13 0.12
7 88 0.78
8 12 0.11
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.45
Consensus pattern (7 bp):
GTTTAAG
Found at i:8575499 original size:16 final size:17
Alignment explanation
Indices: 8575480--8575521 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
8575470 AAATTATTTA
8575480 TAAATAATTT-ATATAT
1 TAAATAATTTAATATAT
8575496 TAAATAATTTAATATAT
1 TAAATAATTTAATATAT
8575513 TAAAATAAT
1 T-AAATAAT
8575522 GATTATAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.42
17 7 0.29
18 7 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATAATTTAATATAT
Found at i:8581141 original size:44 final size:43
Alignment explanation
Indices: 8581028--8581269 Score: 231
Period size: 43 Copynumber: 5.6 Consensus size: 43
8581018 ATATATTTTT
* * * * * *
8581028 TAAAGGTTAT-GTTTTTAGCGGTGTTTTTGCGAGAAGCGTCGG
1 TAAAGGTCATGGTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGC
* * * *
8581070 TAAAGGTTTAT--TCTTTAGCGGCGTTTGTGCTAAAAGCGTCGC
1 TAAAGG-TCATGGTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGC
* * *
8581112 TAAAGGTAATGTTTTTTTAGCGGCGTTTGTGGGAAAAAGCGCCGC
1 TAAAGGTCATG-GTTTTTAGCGGCGTTTGTGCG-AAAAGCGCCGC
*
8581157 TAAAGGTCATGGTTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGGTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGC
* * * * *
8581200 TAAAGGTCTTGGTCTTTAACGGCGTTTGTTG-TAAAAGTGCCGC
1 TAAAGGTCATGGTTTTTAGCGGCGTTTG-TGCGAAAAGCGCCGC
* *
8581243 TAAAGGTCTTGGTCTTTAGCGGCGTTT
1 TAAAGGTCATGGTTTTTAGCGGCGTTT
8581270 ATTTCTAAAA
Statistics
Matches: 175, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
41 3 0.02
42 37 0.21
43 76 0.43
44 39 0.22
45 20 0.11
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (43 bp):
TAAAGGTCATGGTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGC
Found at i:8581207 original size:43 final size:43
Alignment explanation
Indices: 8581081--8581269 Score: 243
Period size: 43 Copynumber: 4.3 Consensus size: 43
8581071 AAAGGTTTAT
** * * *
8581081 TCTTTAGCGGCGTTTGTGCTAAAAGCGTCGCTAAAGGTAATGTT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG-G
*
8581125 TTTTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTCATGG
* *
8581169 TTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
* * * * *
8581212 TCTTTAACGGCGTTTGTTGTAAAAGTGCCGCTAAAGGTCTTGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
8581255 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
8581270 ATTTCTAAAA
Statistics
Matches: 131, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
43 74 0.56
44 37 0.28
45 20 0.15
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
Found at i:8581285 original size:130 final size:129
Alignment explanation
Indices: 8581028--8581269 Score: 290
Period size: 130 Copynumber: 1.9 Consensus size: 129
8581018 ATATATTTTT
* * * * * * * *
8581028 TAAAGGTTATGTTTTTAGCGGTGTTTTTGCGAGAAGCGTCGGTAAAGGTTTATTCTTTAGCGGCG
1 TAAAGGTCATGTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTTTAGTCTTTAACGGCG
* * * *
8581093 TTTGTGCTAAAAGCGTCGCTAAAGGTAATGTTTTTTTAGCGGCGTTTGTGGGAAAAAGCGCCGC
66 TTTGTGCTAAAAGCGCCGCTAAAGGTAATGTGTCTTTAGCGGCGTTTGTGCGAAAAAGCGCCGC
* *
8581157 TAAAGGTCATGGTTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAACGG
1 TAAAGGTCAT-GTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGT-TTAGTCTTTAACGG
* **
8581222 CGTTTGTTG-TAAAAGTGCCGCTAAAGGTCTTG-GTCTTTAGCGGCGTTT
64 CGTTTG-TGCTAAAAGCGCCGCTAAAGGTAATGTGTCTTTAGCGGCGTTT
8581270 ATTTCTAAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
129 9 0.10
130 47 0.50
131 36 0.38
132 2 0.02
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (129 bp):
TAAAGGTCATGTTTTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTTTAGTCTTTAACGGCG
TTTGTGCTAAAAGCGCCGCTAAAGGTAATGTGTCTTTAGCGGCGTTTGTGCGAAAAAGCGCCGC
Found at i:8587342 original size:24 final size:24
Alignment explanation
Indices: 8587315--8587361 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
8587305 TATAAACTTT
8587315 TGTAATTGTAATTAATATATTTAA
1 TGTAATTGTAATTAATATATTTAA
8587339 TGTAATTGTAATTAATATATTTA
1 TGTAATTGTAATTAATATATTTA
8587362 TTCATATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (24 bp):
TGTAATTGTAATTAATATATTTAA
Found at i:8590449 original size:40 final size:40
Alignment explanation
Indices: 8590355--8590558 Score: 232
Period size: 40 Copynumber: 5.1 Consensus size: 40
8590345 AACAGCTTTT
* ** *
8590355 AGTAGAACCAGTAGGTATGGCTCGATAAAGCATAC-TTTT
1 AGTAGAATCAGTAGGTATGGCTCGATAGCGCATACATTTC
* * * ** *
8590394 AGTAGAACCAATAGGTGTGGCTCGATAGTTCCTACATTTC
1 AGTAGAATCAGTAGGTATGGCTCGATAGCGCATACATTTC
*
8590434 AGTAGAATCAGTAGGTATGGCTCGATAACGCATACATTTC
1 AGTAGAATCAGTAGGTATGGCTCGATAGCGCATACATTTC
* *
8590474 AGTA-AATTCAGTAGGTATGGCTCAATAGTGCATACATTTC
1 AGTAGAA-TCAGTAGGTATGGCTCGATAGCGCATACATTTC
* * * *
8590514 AGTAGATTCAGTGGGTATGGCTCAATAGCACATACATTTC
1 AGTAGAATCAGTAGGTATGGCTCGATAGCGCATACATTTC
8590554 AGTAG
1 AGTAG
8590559 GTAACACTCA
Statistics
Matches: 141, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.22
40 109 0.77
41 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (40 bp):
AGTAGAATCAGTAGGTATGGCTCGATAGCGCATACATTTC
Found at i:8590519 original size:80 final size:80
Alignment explanation
Indices: 8590355--8590558 Score: 259
Period size: 80 Copynumber: 2.6 Consensus size: 80
8590345 AACAGCTTTT
* * * * *
8590355 AGTAGAACCAGTAGGTATGGCTCGATAAAGCATAC-TTTTAGTAGAACCAATAGGTGTGGCTCGA
1 AGTAGAATCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAGAACCAATAGGTATGGCTCAA
* *
8590419 TAGTTCCTACATTTC
66 TAGTGCATACATTTC
* *
8590434 AGTAGAATCAGTAGGTATGGCTCGATAACGCATACATTTCAGTA-AATTCAGTAGGTATGGCTCA
1 AGTAGAATCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAGAA-CCAATAGGTATGGCTCA
8590498 ATAGTGCATACATTTC
65 ATAGTGCATACATTTC
* * * * *
8590514 AGTAGATTCAGTGGGTATGGCTCAATAGCACATACATTTCAGTAG
1 AGTAGAATCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAG
8590559 GTAACACTCA
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 35 0.32
80 73 0.68
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (80 bp):
AGTAGAATCAGTAGGTATGGCTCGATAACGCATACATTTCAGTAGAACCAATAGGTATGGCTCAA
TAGTGCATACATTTC
Found at i:8590641 original size:30 final size:30
Alignment explanation
Indices: 8590605--8590665 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8590595 GATATCGTTC
8590605 ACTGAACTTATTTAGTAGGTATGGCTCGAT
1 ACTGAACTTATTTAGTAGGTATGGCTCGAT
8590635 ACTGAACTTATTTAGTAGGTATGGCTCGAT
1 ACTGAACTTATTTAGTAGGTATGGCTCGAT
8590665 A
1 A
8590666 ACGCATACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (30 bp):
ACTGAACTTATTTAGTAGGTATGGCTCGAT
Found at i:8590713 original size:40 final size:41
Alignment explanation
Indices: 8590648--8590762 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 41
8590638 GAACTTATTT
* *
8590648 AGTAGGTATGGCTCGATAACGCATACGTTTCAGTAA-ATTC
1 AGTAGGTATGGCTCAATAGCGCATACGTTTCAGTAAGATTC
* *
8590688 AGTAGGTATGGCTCAATAGCACATACATTTCAG-AAGATTC
1 AGTAGGTATGGCTCAATAGCGCATACGTTTCAGTAAGATTC
8590728 AGTAGGTATGGCTCAATAGCGCATACGTTTCAGTA
1 AGTAGGTATGGCTCAATAGCGCATACGTTTCAGTA
8590763 GGTAACACTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.03
40 64 0.96
41 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (41 bp):
AGTAGGTATGGCTCAATAGCGCATACGTTTCAGTAAGATTC
Found at i:8590802 original size:205 final size:205
Alignment explanation
Indices: 8590443--8590821 Score: 659
Period size: 205 Copynumber: 1.8 Consensus size: 205
8590433 CAGTAGAATC
**
8590443 AGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGGCTCAATAGTGCATA
1 AGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGGCTCAATAGCACATA
* *
8590508 CATTTCAGTAGATTCAGTGGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATTTG
66 CATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATTTG
* * *
8590573 AGCTTCATTTAGTATATTGGTGGATATCGTTCACTGAACTTATTTAGTAGGTATGGCTCGATACT
131 AGCTTCATTCAGTATATCGGTGGATACCGTTCACTGAACTTATTTAGTAGGTATGGCTCGATACT
8590638 GAACTTATTT
196 GAACTTATTT
*
8590648 AGTAGGTATGGCTCGATAACGCATACGTTTCAGTAAATTCAGTAGGTATGGCTCAATAGCACATA
1 AGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGGCTCAATAGCACATA
* *
8590713 CATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCGCATACGTTTCAGTAGGTAACACTCATTTG
66 CATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATTTG
*
8590778 AGCTTCATTCAGTATATCGGTGGATACCGTTCGCTGAACTTATT
131 AGCTTCATTCAGTATATCGGTGGATACCGTTCACTGAACTTATT
8590822 CGATATATAA
Statistics
Matches: 163, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
205 163 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (205 bp):
AGTAGGTATGGCTCGATAACGCATACATTTCAGTAAATTCAGTAGGTATGGCTCAATAGCACATA
CATTTCAGAAGATTCAGTAGGTATGGCTCAATAGCACATACATTTCAGTAGGTAACACTCATTTG
AGCTTCATTCAGTATATCGGTGGATACCGTTCACTGAACTTATTTAGTAGGTATGGCTCGATACT
GAACTTATTT
Found at i:8595458 original size:28 final size:28
Alignment explanation
Indices: 8595418--8595474 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8595408 ATGAAGGTGT
8595418 TTGTTGTTGCAAATGTCTAGGTGATAAA
1 TTGTTGTTGCAAATGTCTAGGTGATAAA
8595446 TTGTTGTTGCAAATGTCTAGGTGATAAA
1 TTGTTGTTGCAAATGTCTAGGTGATAAA
8595474 T
1 T
8595475 CATGCATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (28 bp):
TTGTTGTTGCAAATGTCTAGGTGATAAA
Found at i:8595795 original size:15 final size:15
Alignment explanation
Indices: 8595775--8595807 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
8595765 TTATAGTTTA
8595775 TATTTATAGATTCCT
1 TATTTATAGATTCCT
8595790 TATTTATAGATTCCT
1 TATTTATAGATTCCT
8595805 TAT
1 TAT
8595808 AAAAATGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (15 bp):
TATTTATAGATTCCT
Found at i:8602329 original size:50 final size:50
Alignment explanation
Indices: 8602254--8602478 Score: 261
Period size: 50 Copynumber: 4.5 Consensus size: 50
8602244 ATGGCTTTGG
*
8602254 CATGTATGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGAC
1 CATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGAC
* * **
8602304 CATGTCTGGGACATCGCGTTGGCACCGAGATGAGAGGTCTTATGTAAGAC
1 CATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGAC
* ** * * **
8602354 CATGTTTGGGACATGGTGTTGGCATCGAGATTAGAGGTCCCCCGTAAGAC
1 CATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGAC
* * * * * **
8602404 CATGTTTGGGACATGGAATGGGCACCGATATAAGAACATCCCATGTAAGAC
1 CATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGGTCCCATGTAAGAC
*
8602455 CATGTCTGGGACATGGCTTTGGCA
1 CATGTCTGGGACATGGCATTGGCA
8602479 TGTTATGATC
Statistics
Matches: 146, Mismatches: 28, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 114 0.78
51 32 0.22
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (50 bp):
CATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGAC
Found at i:8604790 original size:37 final size:37
Alignment explanation
Indices: 8604727--8604802 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
8604717 ATTCCAAAAA
*
8604727 TAATATTATTTTAATAGTTTAATATTAAATTAA-ATT
1 TAATATTATCTTAATAGTTTAATATTAAATTAATATT
* *
8604763 TAATAATTATCTTAATAGTATT-TTATTAATTTAATATT
1 TAAT-ATTATCTTAATAGT-TTAATATTAAATTAATATT
8604801 TA
1 TA
8604803 TCTTGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 4 0.12
37 23 0.68
38 7 0.21
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (37 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAATATT
Found at i:8604822 original size:32 final size:31
Alignment explanation
Indices: 8604750--8604832 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 31
8604740 ATAGTTTAAT
* * **
8604750 ATTAAATTAAATTTAATAATTATCTTAATAGT
1 ATTATATT-AATTTAATATTTATCTTAATAAA
* *
8604782 ATTTTATTAATTTAATATTTATCTTGATAAAA
1 ATTATATTAATTTAATATTTATCTTAAT-AAA
8604814 ATTATATTAATTTAATATT
1 ATTATATTAATTTAATATT
8604833 AAAGTGATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 18 0.42
32 25 0.58
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (31 bp):
ATTATATTAATTTAATATTTATCTTAATAAA
Found at i:8607394 original size:15 final size:15
Alignment explanation
Indices: 8607370--8607399 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8607360 AATATCGAAA
8607370 AAAGTAAAAAAAATT
1 AAAGTAAAAAAAATT
*
8607385 AAAGTGAAAAAAATT
1 AAAGTAAAAAAAATT
8607400 TGAAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (15 bp):
AAAGTAAAAAAAATT
Found at i:8608302 original size:20 final size:20
Alignment explanation
Indices: 8608270--8608327 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
8608260 AGCAAATAAT
8608270 AAAA-GAAATTGAGAGAAGAA
1 AAAATGAAA-TGAGAGAAGAA
*
8608290 AAAATGAAATGAGTGAA-AA
1 AAAATGAAATGAGAGAAGAA
*
8608309 AAATTG-AATGAGA-AAGAA
1 AAAATGAAATGAGAGAAGAA
8608327 A
1 A
8608328 GATTGAAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.06
18 9 0.27
19 7 0.21
20 11 0.33
21 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.22, T:0.14
Consensus pattern (20 bp):
AAAATGAAATGAGAGAAGAA
Found at i:8608411 original size:15 final size:16
Alignment explanation
Indices: 8608391--8608422 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
8608381 AGAGTTTGAG
8608391 AATGAAAAAGA-AAAA
1 AATGAAAAAGAGAAAA
8608406 AATGAAAAAGAGAAAA
1 AATGAAAAAGAGAAAA
8608422 A
1 A
8608423 GGAGAATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (16 bp):
AATGAAAAAGAGAAAA
Found at i:8610373 original size:52 final size:50
Alignment explanation
Indices: 8610253--8610375 Score: 158
Period size: 50 Copynumber: 2.4 Consensus size: 50
8610243 GGATTTAATA
*
8610253 AAGTCATGCATTATA-TAACTCTCATGTTAGGTAAGTTTGCATCATAAATT
1 AAGTCATGCATTA-AGTAACTCCCATGTTAGGTAAGTTTGCATCATAAATT
* * * * *
8610303 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAGATT
1 AAGTCATGCATTAAGTAACTCCCATGTTAGGT-AAGTTTGCATCA-TAAATT
8610355 AAGTCATGCATTAAGTAACTC
1 AAGTCATGCATTAAGTAACTC
8610376 ATATGTTCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
50 26 0.43
51 12 0.20
52 23 0.38
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (50 bp):
AAGTCATGCATTAAGTAACTCCCATGTTAGGTAAGTTTGCATCATAAATT
Found at i:8610382 original size:52 final size:49
Alignment explanation
Indices: 8610253--8610382 Score: 145
Period size: 52 Copynumber: 2.6 Consensus size: 49
8610243 GGATTTAATA
8610253 AAGTCATGCATTATA-TAACTCTCATGTTAGGTAAGTTTGCATCATAAATT
1 AAGTCATGCATTA-AGTAACTCT-ATGTTAGGTAAGTTTGCATCATAAATT
* * * * * *
8610303 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAGATT
1 AAGTCATGCATTAAGTAACT-CTATGTTAGGT-AAGTTTGCATCA-TAAATT
8610355 AAGTCATGCATTAAGTAACTCATATGTT
1 AAGTCATGCATTAAGTAACTC-TATGTT
8610383 CATTTAGTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
50 24 0.37
51 14 0.22
52 27 0.42
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (49 bp):
AAGTCATGCATTAAGTAACTCTATGTTAGGTAAGTTTGCATCATAAATT
Found at i:8611486 original size:15 final size:16
Alignment explanation
Indices: 8611459--8611488 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8611449 ACCTTCAATG
8611459 CTAAATCTAGACGATA
1 CTAAATCTAGACGATA
8611475 CTAAAT-TAGACGAT
1 CTAAATCTAGACGAT
8611489 CGGGACAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (16 bp):
CTAAATCTAGACGATA
Found at i:8613296 original size:3 final size:3
Alignment explanation
Indices: 8613288--8613321 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8613278 CTAAATTCTC
8613288 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8613322 GGGTTAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8615850 original size:21 final size:24
Alignment explanation
Indices: 8615810--8615852 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
8615800 GCTTATATAT
8615810 TCCAATAATAAATAATTAAATTTA
1 TCCAATAATAAATAATTAAATTTA
8615834 TCCAAT-ATAAA-AA-TAAATT
1 TCCAATAATAAATAATTAAATT
8615853 GATGTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 5 0.26
24 6 0.32
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCAATAATAAATAATTAAATTTA
Found at i:8616401 original size:5 final size:5
Alignment explanation
Indices: 8616391--8616424 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
8616381 TATTACGATG
8616391 AATTA AATTA AATTA AATTA AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATTA AATT
8616425 GTGAGTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATTA
Found at i:8616630 original size:11 final size:10
Alignment explanation
Indices: 8616586--8616656 Score: 58
Period size: 10 Copynumber: 7.2 Consensus size: 10
8616576 TATTAAACAT
8616586 AATATTAT-A
1 AATATTATAA
* *
8616595 AATTTTATTA
1 AATATTATAA
*
8616605 AATATTATTA
1 AATATTATAA
8616615 AATATTATAA
1 AATATTATAA
8616625 AA-A-TATGAA
1 AATATTAT-AA
*
8616634 AATAATATGAA
1 AATATTAT-AA
*
8616645 AATGTTATAA
1 AATATTATAA
8616655 AA
1 AA
8616657 ATTTAGAAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
8 3 0.06
9 12 0.23
10 26 0.49
11 12 0.23
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.39
Consensus pattern (10 bp):
AATATTATAA
Found at i:8617091 original size:19 final size:20
Alignment explanation
Indices: 8617060--8617100 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8617050 CAAAAATGTG
8617060 TAATAA-TTTTTTTTAATTT
1 TAATAATTTTTTTTTAATTT
8617079 TAAT-ATTTATTTTTTAATTT
1 TAATAATTT-TTTTTTAATTT
8617099 TA
1 TA
8617101 TTATAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 1 0.05
19 6 0.30
20 13 0.65
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TAATAATTTTTTTTTAATTT
Found at i:8617124 original size:20 final size:20
Alignment explanation
Indices: 8617068--8617125 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
8617058 TGTAATAATT
* * *
8617068 TTTTTTAATTTTAATATTTA
1 TTTTTTAATTTTTATAATAA
8617088 TTTTTTAATTTTATTATAATAA
1 TTTTTTAA-TTT-TTATAATAA
*
8617110 TTTTCTAATTTTTATA
1 TTTTTTAATTTTTATA
8617126 GTATTTTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 13 0.41
21 6 0.19
22 13 0.41
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTTAATTTTTATAATAA
Found at i:8617250 original size:10 final size:10
Alignment explanation
Indices: 8617225--8617287 Score: 53
Period size: 10 Copynumber: 6.7 Consensus size: 10
8617215 TTCTATAAGT
*
8617225 TTTTTTATAA
1 TTTTTAATAA
*
8617235 TATTTAATAA
1 TTTTTAATAA
8617245 -TTTT--TAA
1 TTTTTAATAA
8617252 TTTTTAA-AA
1 TTTTTAATAA
*
8617261 TTTTAAATAA
1 TTTTTAATAA
* *
8617271 TATTTAATAT
1 TTTTTAATAA
8617281 TTTTTAA
1 TTTTTAA
8617288 AAGGCTTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 11 0.27
10 23 0.56
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:8617269 original size:26 final size:26
Alignment explanation
Indices: 8617226--8617283 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
8617216 TCTATAAGTT
* *
8617226 TTTTTATAATATTTAATAATTTTTAA
1 TTTTTAAAATATTTAATAATATTTAA
8617252 TTTTTAAAAT-TTTAAATAATATTTAA
1 TTTTTAAAATATTT-AATAATATTTAA
8617278 TATTTT
1 T-TTTT
8617284 TTAAAAGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 3 0.11
26 21 0.75
27 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTTTAAAATATTTAATAATATTTAA
Found at i:8618430 original size:25 final size:25
Alignment explanation
Indices: 8618401--8618554 Score: 84
Period size: 25 Copynumber: 6.1 Consensus size: 25
8618391 CTCACCACTA
*
8618401 AGGCTTCCCAAATAATATGCCATAT
1 AGGCTTCCCAAATAATACGCCATAT
* **
8618426 AGGCTTTCCAGGTAACT-CGCTGCA-A-
1 AGGCTTCCCAAATAA-TACGC--CATAT
*
8618451 AGGCTTCCCAAATAATACGCCACAT
1 AGGCTTCCCAAATAATACGCCATAT
* ** * *
8618476 AAGCTTTTCAAGTAACT-CGCCATAA
1 AGGCTTCCCAAATAA-TACGCCATAT
* * * **
8618501 AGGATTTCCAGATAAATTTGCCACTA-
1 AGGCTTCCCAAAT-AATACGCCA-TAT
8618527 AGGCTTCCCAAATAATACGCCATAT
1 AGGCTTCCCAAATAATACGCCATAT
8618552 AGG
1 AGG
8618555 GGTTTCAAGT
Statistics
Matches: 94, Mismatches: 24, Indels: 22
0.67 0.17 0.16
Matches are distributed among these distances:
23 2 0.02
24 4 0.04
25 65 0.69
26 19 0.20
27 4 0.04
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (25 bp):
AGGCTTCCCAAATAATACGCCATAT
Found at i:8618459 original size:50 final size:50
Alignment explanation
Indices: 8618400--8618495 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
8618390 TCTCACCACT
* * * *
8618400 AAGGCTTCCCAAATAATATGCCATATAGGCTTTCCAGGTAACTCGCTGCA
1 AAGGCTTCCCAAATAATACGCCACATAAGCTTTCCAAGTAACTCGCTGCA
*
8618450 AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGC
1 AAGGCTTCCCAAATAATACGCCACATAAGCTTTCCAAGTAACTCGC
8618496 CATAAAGGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
AAGGCTTCCCAAATAATACGCCACATAAGCTTTCCAAGTAACTCGCTGCA
Found at i:8618503 original size:50 final size:50
Alignment explanation
Indices: 8618395--8618503 Score: 137
Period size: 50 Copynumber: 2.2 Consensus size: 50
8618385 TCAAATCTCA
* * * * *
8618395 CCACTAAGGCTTCCCAAATAATATGCCATATAGGCTTTCCAGGTAACTCG
1 CCACAAAGGCTTCCCAAATAATACGCCACATAAGCTTTCCAAGTAACTCG
** *
8618445 CTGCAAAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCG
1 CCACAAAGGCTTCCCAAATAATACGCCACATAAGCTTTCCAAGTAACTCG
*
8618495 CCATAAAGG
1 CCACAAAGG
8618504 ATTTCCAGAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (50 bp):
CCACAAAGGCTTCCCAAATAATACGCCACATAAGCTTTCCAAGTAACTCG
Found at i:8618544 original size:76 final size:76
Alignment explanation
Indices: 8618450--8618655 Score: 268
Period size: 76 Copynumber: 2.7 Consensus size: 76
8618440 ACTCGCTGCA
* * * *
8618450 AAGGCTTCCCAAATAATACGCCACATAAGCTTTTCAAGTAACTCGCCATAAAGGATTTCCAGATA
1 AAGGCTTCCCAAATAATACGCCACATAGGCTTTTCAAGTAACTCGCCACAAAGGAGTTCAAGATA
8618515 AATTTGCCACT
66 AATTTGCCACT
* ** * *
8618526 AAGGCTTCCCAAATAATACGCCATATAGGGGTTTCAAGTAACTCGCTACAAAGGCGTTCAAGATA
1 AAGGCTTCCCAAATAATACGCCACATAGGCTTTTCAAGTAACTCGCCACAAAGGAGTTCAAGATA
*
8618591 AATTTGCCATT
66 AATTTGCCACT
** * ** *
8618602 TTGACTTCCCAAATAATACATCACATAGGCTTTTCAGGTAACTCGCCACAAAGG
1 AAGGCTTCCCAAATAATACGCCACATAGGCTTTTCAAGTAACTCGCCACAAAGG
8618656 CTTTATTTGG
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
76 110 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (76 bp):
AAGGCTTCCCAAATAATACGCCACATAGGCTTTTCAAGTAACTCGCCACAAAGGAGTTCAAGATA
AATTTGCCACT
Found at i:8622989 original size:45 final size:45
Alignment explanation
Indices: 8622933--8623022 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
8622923 TACTATGTGA
* *
8622933 ACCGAACATCATTGATTAGTAAGGTGGCTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGCTGCTATGTGCTAATTCC
* *
8622978 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAATTCC
1 ACCGAACATCATTGATTAATAAGGTGGCTGCTATGTGCTAATTCC
8623023 GAAGTGTTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGCTGCTATGTGCTAATTCC
Found at i:8628086 original size:23 final size:23
Alignment explanation
Indices: 8628050--8628121 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
8628040 TCACCATAAG
8628050 GGCATTAC-GAAATACGCTACAAA
1 GGCATTACAG-AATACGCTACAAA
* *
8628073 GGCATTACAGAATATG-TCATAAA
1 GGCATTACAGAATACGCT-ACAAA
* *
8628096 GGCATCACAGAATACGCCACAAA
1 GGCATTACAGAATACGCTACAAA
8628119 GGC
1 GGC
8628122 TTTCCAGATA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
22 1 0.03
23 38 0.95
24 1 0.03
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (23 bp):
GGCATTACAGAATACGCTACAAA
Found at i:8628129 original size:23 final size:22
Alignment explanation
Indices: 8628060--8628129 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 22
8628050 GGCATTACGA
* *
8628060 AATACGCTACAAAGGCATTACAG
1 AATACGCCACAAAGGC-TTCCAG
* * * *
8628083 AATATGTCATAAAGGCATCACAG
1 AATACGCCACAAAGGCTTC-CAG
8628106 AATACGCCACAAAGGCTTTCCAG
1 AATACGCCACAAAGGC-TTCCAG
8628129 A
1 A
8628130 TAATTATGTG
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
22 1 0.03
23 32 0.91
24 2 0.06
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (22 bp):
AATACGCCACAAAGGCTTCCAG
Found at i:8630247 original size:76 final size:75
Alignment explanation
Indices: 8630055--8630266 Score: 237
Period size: 75 Copynumber: 2.8 Consensus size: 75
8630045 CTCATATCTC
* * * *
8630055 GCCACTAAGGCTTCCCAAATAATATGCTACATAGGCTTTTCAAGTAACTCCTCGCAAAGGCATTC
1 GCCACTAAGGCCTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTCC-CACAAAGGCATTC
*
8630120 CAAATAAATTC
65 CAAATAAATTA
* * * * * * * **
8630131 TCCACTAAAG-CTTCTAAACAATATGTCACATAAGCTTTTCAGGTAACTCACCACAAAGGTTTTC
1 GCCACTAAGGCCTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTC-CCACAAAGGCATTC
* *
8630195 TAGATAAATTA
65 CAAATAAATTA
*
8630206 GCCATTAAGGCCTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTCGCCACAAAGGC
1 GCCACTAAGGCCTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTC-CCACAAAGGC
8630267 CTTGTTTGGT
Statistics
Matches: 108, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
75 56 0.52
76 52 0.48
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (75 bp):
GCCACTAAGGCCTCCCAAATAATATGCCACATAGGCTTTTCAGGTAACTCCCACAAAGGCATTCC
AAATAAATTA
Found at i:8638484 original size:37 final size:37
Alignment explanation
Indices: 8638434--8638512 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
8638424 TTATTACGAA
* * *
8638434 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
8638471 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
8638508 GTCTT
1 GTCTT
8638513 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:8638718 original size:47 final size:47
Alignment explanation
Indices: 8638633--8638743 Score: 132
Period size: 47 Copynumber: 2.4 Consensus size: 47
8638623 TTTCGGGACT
* * * * *
8638633 TATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTCGGCCC
* * * * *
8638680 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTCGGCCC
8638727 TATCACATATATACACT
1 TATCACATATATACACT
8638744 ATCTTGGCTG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTCGGCCC
Found at i:8643693 original size:31 final size:31
Alignment explanation
Indices: 8643646--8643711 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
8643636 AGAAAACCTT
*
8643646 AATAGTCCAGTTACTTAAA-GACAAACTTTTG
1 AATAGTCCAGTAACTTAAATGA-AAACTTTTG
* *
8643677 AATAGTTCAGTAACTTAAATGAAAATTTTTG
1 AATAGTCCAGTAACTTAAATGAAAACTTTTG
8643708 AATA
1 AATA
8643712 ATTTAATGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (31 bp):
AATAGTCCAGTAACTTAAATGAAAACTTTTG
Found at i:8650923 original size:22 final size:22
Alignment explanation
Indices: 8650897--8650938 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8650887 AGAATAATAA
8650897 TTTCTCAAAGTTATGTGAAAAT
1 TTTCTCAAAGTTATGTGAAAAT
*
8650919 TTTCTCAAAGTTGTGTGAAA
1 TTTCTCAAAGTTATGTGAAA
8650939 CTTATTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (22 bp):
TTTCTCAAAGTTATGTGAAAAT
Found at i:8660352 original size:12 final size:12
Alignment explanation
Indices: 8660335--8660359 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8660325 AGAGACACTG
8660335 TACCATTCAACT
1 TACCATTCAACT
8660347 TACCATTCAACT
1 TACCATTCAACT
8660359 T
1 T
8660360 CAACTATGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (12 bp):
TACCATTCAACT
Found at i:8663754 original size:29 final size:30
Alignment explanation
Indices: 8663686--8663756 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
8663676 CTTAATGGAT
** *
8663686 GTGACCAAAATATTAAATTTGATAACTTTA
1 GTGACCAAAATAAAAAATTTGATAACTTGA
* * *
8663716 GTAACTAAAATAAAAAATTTTA-AACTTGA
1 GTGACCAAAATAAAAAATTTGATAACTTGA
8663745 GTGACCAAAATA
1 GTGACCAAAATA
8663757 GAAACATGCT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (30 bp):
GTGACCAAAATAAAAAATTTGATAACTTGA
Found at i:8673819 original size:21 final size:22
Alignment explanation
Indices: 8673771--8673826 Score: 80
Period size: 21 Copynumber: 2.6 Consensus size: 22
8673761 ATTGTTGTTG
* *
8673771 TTTTTT-ACTGTTTTGTCACTT
1 TTTTTTCATTGTTTTGCCACTT
8673792 TTTTTTCATTGTTTTGCCAC-T
1 TTTTTTCATTGTTTTGCCACTT
8673813 TTTTTTCATTGTTT
1 TTTTTTCATTGTTT
8673827 CGCTATCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.09, C:0.14, G:0.09, T:0.68
Consensus pattern (22 bp):
TTTTTTCATTGTTTTGCCACTT
Found at i:8674495 original size:26 final size:27
Alignment explanation
Indices: 8674462--8674519 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
8674452 TTTTCATTGC
* *
8674462 TAATGTGAC-ATTATTTAAAATAATAA
1 TAATGTGACTATTATTTAAAAGAAAAA
* *
8674488 TAATGTGACTATTTTTTGAAAGAAAAA
1 TAATGTGACTATTATTTAAAAGAAAAA
8674515 TAATG
1 TAATG
8674520 GGGCACTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (27 bp):
TAATGTGACTATTATTTAAAAGAAAAA
Found at i:8685018 original size:14 final size:16
Alignment explanation
Indices: 8684999--8685030 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
8684989 AGGTGGCAAT
8684999 GAAAGTGC-AA-CAAA
1 GAAAGTGCGAATCAAA
8685013 GAAAGTGCGAATCAAA
1 GAAAGTGCGAATCAAA
8685029 GA
1 GA
8685031 CGAGGATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.53, C:0.12, G:0.25, T:0.09
Consensus pattern (16 bp):
GAAAGTGCGAATCAAA
Found at i:8702555 original size:17 final size:17
Alignment explanation
Indices: 8702533--8702570 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8702523 TAATGGTTGA
*
8702533 TATTT-AAAGTTATTTAT
1 TATTTAAAAATTA-TTAT
8702550 TATTTAAAAATTATTAT
1 TATTTAAAAATTATTAT
8702567 TATT
1 TATT
8702571 AATGAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TATTTAAAAATTATTAT
Found at i:8703296 original size:17 final size:18
Alignment explanation
Indices: 8703263--8703297 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8703253 AAAGATAATT
8703263 TATTTAAAAATAATTTTA
1 TATTTAAAAATAATTTTA
*
8703281 TATTTAATAA-AATTTTA
1 TATTTAAAAATAATTTTA
8703298 AATGAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTTAAAAATAATTTTA
Found at i:8710375 original size:32 final size:32
Alignment explanation
Indices: 8710339--8710403 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
8710329 GGGCGATCTG
8710339 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
1 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
8710371 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
1 ATCCACTCCGATTCTCCAAATATGTTCCCCTA
8710403 A
1 A
8710404 GTGATATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.37, G:0.06, T:0.31
Consensus pattern (32 bp):
ATCCACTCCGATTCTCCAAATATGTTCCCCTA
Found at i:8730539 original size:5 final size:5
Alignment explanation
Indices: 8730531--8730572 Score: 59
Period size: 5 Copynumber: 8.4 Consensus size: 5
8730521 TTCATCGTAC
*
8730531 TTTTA TTTT- TATTA TTTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TT
8730573 ATACACATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 3 0.09
5 26 0.79
6 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:8730551 original size:15 final size:15
Alignment explanation
Indices: 8730531--8730575 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
8730521 TTCATCGTAC
8730531 TTTTATTTTTATTAT-
1 TTTTA-TTTTATTATA
*
8730546 TTTTATTTTATTTTA
1 TTTTATTTTATTATA
8730561 TTTTATTTTATTATA
1 TTTTATTTTATTATA
8730576 CACATTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTATTATA
Found at i:8734026 original size:36 final size:35
Alignment explanation
Indices: 8733949--8734016 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
8733939 TTATAATCAA
* * *
8733949 TATCACATGGTATGAAAACATACCCACATATTTAC
1 TATCACATAGCATGAAAACATACCAACATATTTAC
*
8733984 TATCACATAGCATGAATAACATACCAATATATT
1 TATCACATAGCATGAA-AACATACCAACATATT
8734017 CTCTTTCACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 14 0.50
36 14 0.50
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (35 bp):
TATCACATAGCATGAAAACATACCAACATATTTAC
Found at i:8736026 original size:15 final size:16
Alignment explanation
Indices: 8735997--8736026 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8735987 CACCATGAAG
8735997 ATGTACAATCTTCGCA
1 ATGTACAATCTTCGCA
8736013 ATGTACAA-CTTCGC
1 ATGTACAATCTTCGC
8736027 CAACTTCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (16 bp):
ATGTACAATCTTCGCA
Found at i:8747692 original size:11 final size:11
Alignment explanation
Indices: 8747673--8747716 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
8747663 AACACCGAAC
*
8747673 TTTTTGGGTAA
1 TTTTCGGGTAA
8747684 TTTTCGGGTAA
1 TTTTCGGGTAA
8747695 --TTCGGGTAA
1 TTTTCGGGTAA
8747704 TTTTCGGGTAA
1 TTTTCGGGTAA
8747715 TT
1 TT
8747717 CGGTTAATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 9 0.30
11 21 0.70
ACGTcount: A:0.18, C:0.07, G:0.27, T:0.48
Consensus pattern (11 bp):
TTTTCGGGTAA
Done.