Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 43 of 172
Found at i:11391859 original size:70 final size:70
Alignment explanation
Indices: 11391770--11391918 Score: 217
Period size: 70 Copynumber: 2.1 Consensus size: 70
11391760 AGTTTGGTTG
* * * * * *
11391770 GAAAATGATCTACTGGCTCTACAGAGCAGCATTATGGAAATGATCTAGTAGTTCTATGGAGTGAT
1 GAAAATGGTCTACTAGCTCTACAGAGCAGCATTATGGAAATGATCTACTAGCTCTACGGAGTGAC
11391835 ACCAT
66 ACCAT
* * *
11391840 GGAAATGGTCTACTAGCTCTACGGAGCAGCATTATGGAAATGATCTACTGGCTCTACGGAGTGAC
1 GAAAATGGTCTACTAGCTCTACAGAGCAGCATTATGGAAATGATCTACTAGCTCTACGGAGTGAC
11391905 ACCAT
66 ACCAT
11391910 GAAAATGGT
1 GAAAATGGT
11391919 TTCCTAACTC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (70 bp):
GAAAATGGTCTACTAGCTCTACAGAGCAGCATTATGGAAATGATCTACTAGCTCTACGGAGTGAC
ACCAT
Found at i:11395054 original size:87 final size:89
Alignment explanation
Indices: 11394902--11395075 Score: 271
Period size: 87 Copynumber: 2.0 Consensus size: 89
11394892 CCCTGCATCA
* * *
11394902 TCTCATTATCTTTTGTCGATCGAAAAACTGAAAATGATGCACTGCTGCAAATCTTTTTCTGCATT
1 TCTCATTATCTTTTGTCGATCGAAAAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATT
*
11394967 T-TAACCTCCCACTTAATAAGAGT
66 TGAAACCTCCCACTTAATAAGAGT
* * *
11394990 TCTCATTCTC-TTTGTTGATCGAATAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATT
1 TCTCATTATCTTTTGTCGATCGAAAAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATT
11395054 TGAAACCTCCCACTTAATAAGA
66 TGAAACCTCCCACTTAATAAGA
11395076 TAACTCATTA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
87 50 0.64
88 28 0.36
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (89 bp):
TCTCATTATCTTTTGTCGATCGAAAAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATT
TGAAACCTCCCACTTAATAAGAGT
Found at i:11399918 original size:12 final size:12
Alignment explanation
Indices: 11399901--11399930 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
11399891 ATGTAAAATC
11399901 TAAACTAACATT
1 TAAACTAACATT
*
11399913 TAAACTAACGTT
1 TAAACTAACATT
11399925 TAAACT
1 TAAACT
11399931 GATAAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (12 bp):
TAAACTAACATT
Found at i:11401088 original size:18 final size:18
Alignment explanation
Indices: 11401068--11401101 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11401058 AAAAAACATA
11401068 AAAAT-TAATATAAATAT
1 AAAATGTAATATAAATAT
*
11401085 AAAATGTATTATAAATA
1 AAAATGTAATATAAATA
11401102 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
AAAATGTAATATAAATAT
Found at i:11405927 original size:143 final size:143
Alignment explanation
Indices: 11405750--11406172 Score: 630
Period size: 143 Copynumber: 3.0 Consensus size: 143
11405740 TTTTAATCCG
* * * *
11405750 CTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATATACTCCACTGCAACTTTAGGAAG
1 CTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
* * * * *
11405815 ATAAGATCTGCCATAATTTGTAGCTTTAATTTGCTCCACTACAACGCCAGGGAAATAAGATTCGC
66 ATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGC
*
11405880 TGTCTTCAGTCTG
131 TGTCTTCAGTCTA
* * *
11405893 CTCTGCTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGTAACTTCAGGAAG
1 CTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
* ** *
11405958 ATAAGATCCGTCATAATTTGTAATTTTAATCTGTTCCACTGTAACGCCAGGGAAATAAGATTTGC
66 ATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGC
* *
11406023 CGTATTCAGTCTA
131 TGTCTTCAGTCTA
* *
11406036 CTCCGCTGTAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAG
1 CTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
* * *
11406101 ATAAGATCCACCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTTGA
66 ATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGC
11406166 TGTCTTC
131 TGTCTTC
11406173 TTGCTCAACT
Statistics
Matches: 247, Mismatches: 33, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
143 247 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
CTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAG
ATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGC
TGTCTTCAGTCTA
Found at i:11406779 original size:7 final size:6
Alignment explanation
Indices: 11406762--11406800 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
11406752 TTAGCCTCTC
*
11406762 CTTTTT CTTTTT CTTTTTT CTTTTT C-TTTT ATTTTT CTT
1 CTTTTT CTTTTT C-TTTTT CTTTTT CTTTTT CTTTTT CTT
11406801 ATTTTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 4 0.14
6 19 0.66
7 6 0.21
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:11406781 original size:13 final size:13
Alignment explanation
Indices: 11406763--11406791 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
11406753 TAGCCTCTCC
11406763 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
11406776 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
11406789 TTT
1 TTT
11406792 ATTTTTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:11406911 original size:14 final size:15
Alignment explanation
Indices: 11406888--11406920 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
11406878 ATTAATGCTT
*
11406888 TTCCAGATAAGG-CC
1 TTCCACATAAGGACC
11406902 TTCCACATAAGGACC
1 TTCCACATAAGGACC
11406917 TTCC
1 TTCC
11406921 TAGTTTGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (15 bp):
TTCCACATAAGGACC
Found at i:11408569 original size:250 final size:250
Alignment explanation
Indices: 11408128--11408628 Score: 894
Period size: 250 Copynumber: 2.0 Consensus size: 250
11408118 TGCACTTTTG
*
11408128 AATCTCGTAACCCTCTTCATCATGGAACTCATAGTAGTTCCTTACTTCTCCAGGTTTCTCCCTTA
1 AATCTCGTAACCCTCTTCATCATGAAACTCATAGTAGTTCCTTACTTCTCCAGGTTTCTCCCTTA
*
11408193 AATCTTATGCGATTAATCTTCCTTCTATCATTTTCCTCTAAACCTCCCTCAGCAGGGTTTTCACT
66 AATCCTATGCGATTAATCTTCCTTCTATCATTTTCCTCTAAACCTCCCTCAGCAGGGTTTTCACT
* *
11408258 TCTACTACATCTGTCTTGATTCTCCTCCCTACACTCTCGATTCTCGTGTTTACCCATTTGTCAGA
131 TCTACTACATCTGTCTTGATTCTCCTCCCTACACTATCGATTATCGTGTTTACCCATTTGTCAGA
*
11408323 ATGGTTGGGTAACGAATTTTCTGCACTAGATGGATCATCGAATTTCACAATACCC
196 ATGGTTGGGTAACGAATTTTCTACACTAGATGGATCATCGAATTTCACAATACCC
* *
11408378 AATCTCGTGACCCTCTTCATCATGAAACTCATAGTAGTTCCTTGCTTCTCCAGGTTTCTCCCTTA
1 AATCTCGTAACCCTCTTCATCATGAAACTCATAGTAGTTCCTTACTTCTCCAGGTTTCTCCCTTA
* **
11408443 AATCCTGTGCGATTAATCTTCCTTCTATCATTTTCCTCTAAACCTCCCTCAGTGGGGTTTTCACT
66 AATCCTATGCGATTAATCTTCCTTCTATCATTTTCCTCTAAACCTCCCTCAGCAGGGTTTTCACT
*
11408508 TCTACTACATCTGTCTTGATTCTCCTCCCTGCACTATCGATTATCGTGTTTACCCATTTGTCAGA
131 TCTACTACATCTGTCTTGATTCTCCTCCCTACACTATCGATTATCGTGTTTACCCATTTGTCAGA
*
11408573 ATGGTTGGGTAACGAATTTTCTACACTAGATGGATCATCGAATTTCATAATACCC
196 ATGGTTGGGTAACGAATTTTCTACACTAGATGGATCATCGAATTTCACAATACCC
11408628 A
1 A
11408629 TTTTGATGAG
Statistics
Matches: 239, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
250 239 1.00
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (250 bp):
AATCTCGTAACCCTCTTCATCATGAAACTCATAGTAGTTCCTTACTTCTCCAGGTTTCTCCCTTA
AATCCTATGCGATTAATCTTCCTTCTATCATTTTCCTCTAAACCTCCCTCAGCAGGGTTTTCACT
TCTACTACATCTGTCTTGATTCTCCTCCCTACACTATCGATTATCGTGTTTACCCATTTGTCAGA
ATGGTTGGGTAACGAATTTTCTACACTAGATGGATCATCGAATTTCACAATACCC
Found at i:11413180 original size:13 final size:13
Alignment explanation
Indices: 11413162--11413186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11413152 TAATGGTATA
11413162 TTGAATCCATGAT
1 TTGAATCCATGAT
11413175 TTGAATCCATGA
1 TTGAATCCATGA
11413187 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:11414982 original size:47 final size:47
Alignment explanation
Indices: 11414797--11415396 Score: 957
Period size: 47 Copynumber: 12.6 Consensus size: 47
11414787 TTATTCATTG
* *
11414797 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
11414844 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
11414893 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
11414942 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
11414989 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
11415036 GAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
11415083 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
11415132 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
11415181 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
11415228 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
11415275 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * **
11415322 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACATGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
11415369 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
11415397 TCCTGAAGGG
Statistics
Matches: 526, Mismatches: 23, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
47 339 0.64
49 187 0.36
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:11415216 original size:239 final size:239
Alignment explanation
Indices: 11414797--11415396 Score: 1073
Period size: 239 Copynumber: 2.5 Consensus size: 239
11414787 TTATTCATTG
11414797 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
11414862 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
11414927 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
11414992 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
196 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
*
11415036 GAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
11415101 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
11415166 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
*
11415231 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
196 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
* *
11415275 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * ** *
11415338 ATATGTGACAGGGCCGAGTGGCCAACATGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
11415397 TCCTGAAGGG
Statistics
Matches: 349, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
235 10 0.03
236 1 0.00
237 44 0.13
239 294 0.84
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (239 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
Found at i:11431500 original size:32 final size:32
Alignment explanation
Indices: 11431454--11431518 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
11431444 TACTCAGAAT
*
11431454 TTGCTTAAATTGTTCATAAAAGAGTGTTGAAC
1 TTGCATAAATTGTTCATAAAAGAGTGTTGAAC
11431486 TTGCATAAATTGTTCATAAAAGAGTGTTGAAC
1 TTGCATAAATTGTTCATAAAAGAGTGTTGAAC
11431518 T
1 T
11431519 ATCTACATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.37
Consensus pattern (32 bp):
TTGCATAAATTGTTCATAAAAGAGTGTTGAAC
Found at i:11432811 original size:37 final size:35
Alignment explanation
Indices: 11432750--11432818 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 35
11432740 AATTGCAGTC
*
11432750 AAAATTTATTTTTCAAAAATTAAAATAATAAAAAAAT
1 AAAATTAATTTTTCAAAAATT-AAA-AATAAAAAAAT
*
11432787 AAAATTAATGTTTTTAAAAA-TAAAAATAAAAA
1 AAAATTAAT-TTTTCAAAAATTAAAAATAAAAA
11432819 TCTAACTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 8 0.28
36 3 0.10
37 9 0.31
38 9 0.31
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (35 bp):
AAAATTAATTTTTCAAAAATTAAAAATAAAAAAAT
Found at i:11438926 original size:17 final size:17
Alignment explanation
Indices: 11438904--11438946 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
11438894 GTGTGTCTCA
11438904 GCCGTGTGAATCACATG
1 GCCGTGTGAATCACATG
11438921 GCCGTGTGAATCACATG
1 GCCGTGTGAATCACATG
*
11438938 GTCGTGTGA
1 GCCGTGTGA
11438947 CCCCTATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (17 bp):
GCCGTGTGAATCACATG
Found at i:11441077 original size:17 final size:17
Alignment explanation
Indices: 11441057--11441090 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
11441047 TAATTTAAAT
11441057 AAATAATTTTCTCAACC
1 AAATAATTTTCTCAACC
11441074 AAATAATTTTCTCAACC
1 AAATAATTTTCTCAACC
11441091 CAATTCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATAATTTTCTCAACC
Found at i:11455780 original size:30 final size:27
Alignment explanation
Indices: 11455735--11455796 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 27
11455725 TACACAAAAT
*
11455735 AATATTATAATATATAACTTTTATTAAA
1 AATATTATAATATATAACTATTA-TAAA
*
11455763 AATATTAATACATATATAACTATTATAAT
1 AATATT-ATA-ATATATAACTATTATAAA
11455792 AATAT
1 AATAT
11455797 AAATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 6 0.20
29 11 0.37
30 13 0.43
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (27 bp):
AATATTATAATATATAACTATTATAAA
Found at i:11456029 original size:16 final size:17
Alignment explanation
Indices: 11456010--11456042 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
11456000 TATATAATGT
11456010 ACTACTATTAT-ATATA
1 ACTACTATTATGATATA
*
11456026 ACTATTATTATGATATA
1 ACTACTATTATGATATA
11456043 GATTATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (17 bp):
ACTACTATTATGATATA
Found at i:11456069 original size:245 final size:241
Alignment explanation
Indices: 11455774--11456472 Score: 798
Period size: 240 Copynumber: 2.8 Consensus size: 241
11455764 ATATTAATAC
* * *
11455774 ATATATAACTATTATAATAATATAAATTATAATAAAAGATATGGTATTACATGAAATTATAATGT
1 ATATATAACTATTATTAT-ATATAAATTATAATAAAAGATATAGTATTACATGATATTATAATGT
* * * * * * *
11455839 TTAATCGTCGACGCATATATATAAACTATTAATGTATGATATGATATGATACAACATTATGTAAC
65 TTAATCATTGATGCATATATATAAACTATTAATGTATCATATGATATGATATAACATTATATAAT
* * *
11455904 ATAATAGGTGAGCTAACTTTTAAATGTA-GCAAAAGTATAGAGACTTAGAGCATGTTTCAATCAA
130 ATAATAGGAG-GCTAACTTTTAAATGTATG-AAAAGTATAGAGACTTAGAGCATATTTCAA-CAG
* *
11455968 TATAATAATAAATAGTAATATATAATAATTACTATATAATGTACTACTATT
192 TATAATAATAAATAATAATATATAATAATTAATAT-TAATGTACTACTATT
* * *
11456019 ATATATAACTATTATTATGATATAGATTATAATAAAAGATATAATATTACATGATATTATCATGT
1 ATATATAACTATTATTAT-ATATAAATTATAATAAAAGATATAGTATTACATGATATTATAATGT
* * * * * *
11456084 TTAGTCATTTATGCATGTATATAAACTA-TAA---A-CATATTATATAATATAGCATTATATAAT
65 TTAATCATTGATGCATATATATAAACTATTAATGTATCATATGATATGATATAACATTATATAAT
* * * *
11456144 ATAGTAAGAGGGCTAACTTTTAAATGTATGAAAAGTATAGAGATTTATAGCATATTTCAACTAGT
130 ATAATAGGA-GGCTAACTTTTAAATGTATGAAAAGTATAGAGACTTAGAGCATATTTCAAC-AGT
*
11456209 ATATTAATAAATAATAATATATAATAATTAATATTAATGTACTACTATT
193 ATAATAATAAATAATAATATATAATAATTAATATTAATGTACTACTATT
*
11456258 ATATATAACCATTATTATATTATATTTATAAATTATAATAAAAAAATATAGTATTACATGATATT
1 ATATATAA-C--TA-T-TATTATA--TATAAATTATAAT-AAAAGATATAGTATTACATGATATT
** *
11456323 ATAATGTTTAATCATTGATAAATATACATAAACTATTAATATAGTATATACTATATGATATGATA
58 ATAATGTTTAATCATTGATGCATATATATAAACTATT-A-AT-G--TAT-C-ATATGATATGATA
* * * *
11456388 TAACATAATATAATATAATAGGAGGATTAACTTTCAAATGTATGAAAAGTAGAGAGACTTAGAGC
116 TAACATTATATAATATAATAGGAGG-CTAACTTTTAAATGTATGAAAAGTATAGAGACTTAGAGC
11456453 ATATTTCAAGCAGTATAATA
180 ATATTTCAA-CAGTATAATA
11456473 TATGATAATG
Statistics
Matches: 377, Mismatches: 52, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
239 24 0.06
240 105 0.28
241 3 0.01
242 2 0.01
243 2 0.01
244 9 0.02
245 92 0.24
246 51 0.14
247 1 0.00
248 1 0.00
249 1 0.00
255 1 0.00
257 3 0.01
258 81 0.21
259 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.37
Consensus pattern (241 bp):
ATATATAACTATTATTATATATAAATTATAATAAAAGATATAGTATTACATGATATTATAATGTT
TAATCATTGATGCATATATATAAACTATTAATGTATCATATGATATGATATAACATTATATAATA
TAATAGGAGGCTAACTTTTAAATGTATGAAAAGTATAGAGACTTAGAGCATATTTCAACAGTATA
ATAATAAATAATAATATATAATAATTAATATTAATGTACTACTATT
Found at i:11456137 original size:15 final size:15
Alignment explanation
Indices: 11456119--11456147 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11456109 CTATAAACAT
11456119 ATTATATAATATAGC
1 ATTATATAATATAGC
11456134 ATTATATAATATAG
1 ATTATATAATATAG
11456148 TAAGAGGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.41
Consensus pattern (15 bp):
ATTATATAATATAGC
Found at i:11456236 original size:20 final size:20
Alignment explanation
Indices: 11456208--11456246 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11456198 TTTCAACTAG
*
11456208 TATATTAATAAATAATAATA
1 TATAATAATAAATAATAATA
* *
11456228 TATAATAATTAATATTAAT
1 TATAATAATAAATAATAAT
11456247 GTACTACTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TATAATAATAAATAATAATA
Found at i:11458227 original size:32 final size:30
Alignment explanation
Indices: 11458190--11458301 Score: 104
Period size: 32 Copynumber: 3.5 Consensus size: 30
11458180 TTAATATTTA
11458190 ATTTAATTTAATACTTATCTTAATAGTATTAT
1 ATTTAATTTAATA-TTATCTT-ATAGTATTAT
*
11458222 ATTTAATATTAAAGTGATTATCTTA-A-TATTAA
1 ATTTAAT-TT-AA-T-ATTATCTTATAGTATTAT
*
11458254 ATTTAATCTAATATTTATCTTTATCAGTATTAT
1 ATTTAATTTAATA-TTATC-TTAT-AGTATTAT
11458287 A-TTAATTTAATATTA
1 ATTTAATTTAATATTA
11458302 AAGTAATTAA
Statistics
Matches: 67, Mismatches: 4, Indels: 19
0.74 0.04 0.21
Matches are distributed among these distances:
28 1 0.01
29 6 0.09
30 5 0.07
31 4 0.06
32 30 0.45
33 9 0.13
34 3 0.04
35 8 0.12
36 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (30 bp):
ATTTAATTTAATATTATCTTATAGTATTAT
Found at i:11458241 original size:21 final size:19
Alignment explanation
Indices: 11458209--11458254 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
11458199 AATACTTATC
*
11458209 TTAATAGTATTATATTTAATA
1 TTAA-AGTATTAT-CTTAATA
11458230 TTAAAGTGATTATCTTAATA
1 TTAAAGT-ATTATCTTAATA
11458250 TTAAA
1 TTAAA
11458255 TTTAATCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
TTAAAGTATTATCTTAATA
Found at i:11460961 original size:17 final size:18
Alignment explanation
Indices: 11460934--11460967 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11460924 TCTTCGTCCT
11460934 CTAAGGGGAAACAAAAAG
1 CTAAGGGGAAACAAAAAG
*
11460952 CTAA-GGGAAAGAAAAA
1 CTAAGGGGAAACAAAAA
11460968 ACCGAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.06
Consensus pattern (18 bp):
CTAAGGGGAAACAAAAAG
Found at i:11462719 original size:44 final size:44
Alignment explanation
Indices: 11462665--11462751 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
11462655 GAACTGTATT
* * *
11462665 ATCGGATAGACTAAAGTAGGGTAAACTGGCAAGTAAAATGCATC
1 ATCGAATAGACCAAAGTAGGATAAACTGGCAAGTAAAATGCATC
* * * *
11462709 ATCGAATAGACCGAAGTAGGATAACCTGGCATGTAAAGTGCAT
1 ATCGAATAGACCAAAGTAGGATAAACTGGCAAGTAAAATGCAT
11462752 ACTGGTGCTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (44 bp):
ATCGAATAGACCAAAGTAGGATAAACTGGCAAGTAAAATGCATC
Found at i:11464868 original size:41 final size:41
Alignment explanation
Indices: 11464811--11464893 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
11464801 TTAATCTTGA
* * *
11464811 TAAACATCTGCTTAATAATATAATATTCATATAACAATATG
1 TAAACATCCGCTTAATAATATAATATTCACAAAACAATATG
11464852 TAAACATCCGCTTAATAATATAATATTCACAAAACAATATG
1 TAAACATCCGCTTAATAATATAATATTCACAAAACAATATG
11464893 T
1 T
11464894 TTTTATTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (41 bp):
TAAACATCCGCTTAATAATATAATATTCACAAAACAATATG
Found at i:11465410 original size:5 final size:5
Alignment explanation
Indices: 11465400--11465430 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
11465390 AATTACCATA
*
11465400 TAATT TAATT TAATT TAATT TAATG TAATT T
1 TAATT TAATT TAATT TAATT TAATT TAATT T
11465431 TGACATTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (5 bp):
TAATT
Found at i:11465511 original size:6 final size:6
Alignment explanation
Indices: 11465496--11465524 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
11465486 AATATGTATT
11465496 ATTT-A ATTTAA ATTTAA ATTTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
11465525 GATAATTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTTAA
Found at i:11470242 original size:18 final size:18
Alignment explanation
Indices: 11470193--11470231 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
11470183 AATCAAAATT
*
11470193 TAAAAATCAAATTTAAAC
1 TAAAGATCAAATTTAAAC
11470211 TAAAGATCAAATTTAAAC
1 TAAAGATCAAATTTAAAC
11470229 TAA
1 TAA
11470232 TTACAGAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (18 bp):
TAAAGATCAAATTTAAAC
Found at i:11470299 original size:29 final size:29
Alignment explanation
Indices: 11470266--11470329 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
11470256 AAATAAGTTG
*
11470266 ATCTTTATCCAACCAATTTCAAATATTTA
1 ATCTTTATCCAACCAATTTCAAATATTCA
11470295 ATCTTTATCCAACCAATTTCAAATATTCA
1 ATCTTTATCCAACCAATTTCAAATATTCA
11470324 ATCTTT
1 ATCTTT
11470330 CAATTTACTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (29 bp):
ATCTTTATCCAACCAATTTCAAATATTCA
Found at i:11473114 original size:16 final size:18
Alignment explanation
Indices: 11473090--11473122 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11473080 TATCACAATT
11473090 TTTTATTAAAT-TATAAA
1 TTTTATTAAATATATAAA
11473107 TTTT-TTAAATATATAA
1 TTTTATTAAATATATAA
11473123 TTACCACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATATATAAA
Found at i:11480559 original size:134 final size:137
Alignment explanation
Indices: 11480417--11480676 Score: 348
Period size: 142 Copynumber: 1.9 Consensus size: 137
11480407 CTTGGATTGG
* * * * *
11480417 GAAATAAATAAATAGTGATTGTGGATTTGCATG-AAAAA-CTAGAAAATGTTTG-ACATCTTTTT
1 GAAATAAATAAATAATGATAGTGGATTTGCATGAAAAAACCAAAAAAATGTTTGTACATATTTTT
* *
11480479 TATAA-ATAGATAAGGTTGAAAATGTTAGATTTATAGATTGAACTCAATATTTTTATATCATGTA
66 TATAATATAGATAAGGTTGAAAATGTTAGACTTATAGATTCAACTCAA-ATTTTTATATCATGTA
11480543 AAATAATA
130 AAATAATA
* *
11480551 GAAATAAATAAATAATGATAGTGGATTTGTATGAAAAAACCAAAAAAATGTTTGATTTATATATT
1 GAAATAAATAAATAATGATAGTGGATTTGCATGAAAAAACCAAAAAAATGTTTG---TACATATT
* *
11480616 TTTTATAATTATAGATAAGGTTGAAAATGTTAGACTTATTGATTCAACTCCAATTTTTATA
63 TTTTATAA-TATAGATAAGGTTGAAAATGTTAGACTTATAGATTCAACTCAAATTTTTATA
11480677 AAAAAAAAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
134 30 0.28
135 5 0.05
136 12 0.11
140 13 0.12
141 9 0.08
142 38 0.36
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (137 bp):
GAAATAAATAAATAATGATAGTGGATTTGCATGAAAAAACCAAAAAAATGTTTGTACATATTTTT
TATAATATAGATAAGGTTGAAAATGTTAGACTTATAGATTCAACTCAAATTTTTATATCATGTAA
AATAATA
Found at i:11488121 original size:121 final size:120
Alignment explanation
Indices: 11487977--11488292 Score: 580
Period size: 121 Copynumber: 2.6 Consensus size: 120
11487967 AAGTAGACTA
11487977 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
11488042 AAATTCATATAAGAATATTTAATACTAAAGAATTTTATCAAATTATATATTTTTAT
66 AAATTCATATAAGAATATTTAATACT-AAGAATTTTATCAAATTATATATTTTTAT
11488098 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
* * *
11488163 AAATTCATATAAGAATATTTAATACTAAGGATTTTATTAAATTATATATTTTTGT
66 AAATTCATATAAGAATATTTAATACTAAGAATTTTATCAAATTATATATTTTTAT
*
11488218 TAAATTATA-TTAATAATAAATATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
11488282 AAATTCATATA
66 AAATTCATATA
11488293 TTTTATTAAA
Statistics
Matches: 191, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
119 65 0.34
120 35 0.18
121 91 0.48
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (120 bp):
TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
AAATTCATATAAGAATATTTAATACTAAGAATTTTATCAAATTATATATTTTTAT
Found at i:11488257 original size:7 final size:7
Alignment explanation
Indices: 11488223--11488393 Score: 60
Period size: 7 Copynumber: 24.9 Consensus size: 7
11488213 TTTGTTAAAT
11488223 TATATTA
1 TATATTA
*
11488230 -ATAATA
1 TATATTA
* *
11488236 AATATTT
1 TATATTA
*
11488243 TAAATTA
1 TATATTA
*
11488250 TATTTTA
1 TATATTA
11488257 TAGTATTA
1 TA-TATTA
11488265 TATATTA
1 TATATTA
*
11488272 TGATTTTA
1 T-ATATTA
*
11488280 GTAAATTCA
1 -TATATT-A
11488289 TATATT-
1 TATATTA
11488295 T-TATTA
1 TATATTA
11488301 -A-ATTA
1 TATATTA
11488306 TAT-TTGA
1 TATATT-A
*
11488313 TA-ATAA
1 TATATTA
*
11488319 T-TATTT
1 TATATTA
*
11488325 TAAATTA
1 TATATTA
*
11488332 TATTTTA
1 TATATTA
11488339 TATTATTA
1 TA-TATTA
11488347 TATATTA
1 TATATTA
*
11488354 TGATTTTA
1 T-ATATTA
*
11488362 GTAAATTCA
1 -TATATT-A
11488371 TATATT-
1 TATATTA
11488377 T-TATTA
1 TATATTA
11488383 -A-ATTA
1 TATATTA
11488388 TATATT
1 TATATT
11488394 TTTATTAAAT
Statistics
Matches: 118, Mismatches: 25, Indels: 42
0.64 0.14 0.23
Matches are distributed among these distances:
5 16 0.14
6 16 0.14
7 44 0.37
8 38 0.32
9 4 0.03
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (7 bp):
TATATTA
Found at i:11488297 original size:18 final size:17
Alignment explanation
Indices: 11488243--11488408 Score: 78
Period size: 18 Copynumber: 9.6 Consensus size: 17
11488233 ATAAATATTT
11488243 TAAATTATAT-TTTATAG
1 TAAATTATATATTT-TAG
*
11488260 TATTATATATTATGATTTTAG
1 TA-AAT-TA-TAT-ATTTTAG
*
11488281 TAAATTCATATATTTTAT
1 TAAATT-ATATATTTTAG
*
11488299 TAAA-T-TATATTTGA-
1 TAAATTATATATTTTAG
* *
11488313 T-AATAAT-TATTTTAAAT
1 TAAATTATATATTTT--AG
* *
11488330 TATATTTTATATTATTA-
1 TAAATTATATATT-TTAG
* *
11488347 TATATTAT-GATTTTAG
1 TAAATTATATATTTTAG
*
11488363 TAAATTCATATATTTTAT
1 TAAATT-ATATATTTTAG
*
11488381 TAAATTATATATTTTTAT
1 TAAATTATATA-TTTTAG
11488399 TAAATTATAT
1 TAAATTATAT
11488409 TTAATAATAA
Statistics
Matches: 117, Mismatches: 14, Indels: 35
0.70 0.08 0.21
Matches are distributed among these distances:
13 2 0.02
14 6 0.05
15 12 0.10
16 9 0.08
17 18 0.15
18 44 0.38
19 10 0.09
20 8 0.07
21 5 0.04
22 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (17 bp):
TAAATTATATATTTTAG
Found at i:11488329 original size:82 final size:82
Alignment explanation
Indices: 11488192--11488390 Score: 330
Period size: 82 Copynumber: 2.4 Consensus size: 82
11488182 TAATACTAAG
* *
11488192 GATTTTATTAAATT-ATATATTTTTGTTAAATTATA-TTAATAATAAATATTTTAAATTATATTT
1 GATTTTAGTAAATTCATATA-TTTTATTAAATTATATTTAATAATAAATATTTTAAATTATATTT
11488255 TATAGTATTATATATTAT
65 TATAGTATTATATATTAT
* *
11488273 GATTTTAGTAAATTCATATATTTTATTAAATTATATTTGATAATAATTATTTTAAATTATATTTT
1 GATTTTAGTAAATTCATATATTTTATTAAATTATATTTAATAATAAATATTTTAAATTATATTTT
*
11488338 ATATTATTATATATTAT
66 ATAGTATTATATATTAT
11488355 GATTTTAGTAAATTCATATATTTTATTAAATTATAT
1 GATTTTAGTAAATTCATATATTTTATTAAATTATAT
11488391 ATTTTTATTA
Statistics
Matches: 111, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
81 27 0.24
82 84 0.76
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (82 bp):
GATTTTAGTAAATTCATATATTTTATTAAATTATATTTAATAATAAATATTTTAAATTATATTTT
ATAGTATTATATATTAT
Found at i:11488609 original size:44 final size:46
Alignment explanation
Indices: 11488560--11488653 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
11488550 ATTACAACAT
* * *
11488560 CATTCCATTCAACTAAACACAAGAAT-ACC-ATTATGCCTCTATTC
1 CATTCCATTCAACCAAACAAAAGAATCACCTATTACGCCTCTATTC
*
11488604 CATTCCATTCAACCAAACAAAAGGATCACCTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACAAAAGAATCACCTATTACGCCTCTATTC
11488650 CATT
1 CATT
11488654 ACGCATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.35, C:0.31, G:0.05, T:0.29
Consensus pattern (46 bp):
CATTCCATTCAACCAAACAAAAGAATCACCTATTACGCCTCTATTC
Found at i:11488656 original size:16 final size:16
Alignment explanation
Indices: 11488635--11488687 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
11488625 AGGATCACCT
11488635 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
* *
11488651 ATTACGCATTTATTCC
1 ATTACGCCTCTATTCC
*
11488667 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
11488683 ATTAC
1 ATTAC
11488688 AGCGAACCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.25, C:0.32, G:0.04, T:0.40
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:11495400 original size:24 final size:24
Alignment explanation
Indices: 11495355--11495414 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
11495345 ATCATTTAAC
* **
11495355 TTTATATATATACGTACATACCTT
1 TTTATATATATACGCACATACCCA
* **
11495379 TTTTTATATATACGCATGTACCCA
1 TTTATATATATACGCACATACCCA
11495403 TTTATATATATA
1 TTTATATATATA
11495415 TTTTATATTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.47
Consensus pattern (24 bp):
TTTATATATATACGCACATACCCA
Found at i:11495451 original size:25 final size:27
Alignment explanation
Indices: 11495402--11495453 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
11495392 GCATGTACCC
* *
11495402 ATTTATATATATATTTTATATTCTATA
1 ATTTATATATACATTTTAGATTCTATA
11495429 ATTTATATATACA-TTTAGA-TCTATA
1 ATTTATATATACATTTTAGATTCTATA
11495454 TATATTTTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 5 0.22
27 12 0.52
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (27 bp):
ATTTATATATACATTTTAGATTCTATA
Found at i:11495455 original size:27 final size:28
Alignment explanation
Indices: 11495402--11495460 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
11495392 GCATGTACCC
* * *
11495402 ATTTATATATATATTTTATATTCTATA-
1 ATTTATATATACATTTTAGATTATATAT
11495429 ATTTATATATACA-TTTAGATCTATATAT
1 ATTTATATATACATTTTAGAT-TATATAT
11495457 ATTT
1 ATTT
11495461 TCCTTACGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 17 0.63
28 4 0.15
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (28 bp):
ATTTATATATACATTTTAGATTATATAT
Found at i:11500118 original size:32 final size:32
Alignment explanation
Indices: 11500049--11500118 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
11500039 AATTGATTTC
*
11500049 AAAGACGAAAGTTTTAACAAAAGAAAAGAAAAC
1 AAAGACGAAAGTTTTAACAAAAG-AAAGAAAAA
* * *
11500082 AAAGATGAAAGTTTTAACCAGAAG-TAGAAAAA
1 AAAGACGAAAGTTTTAA-CAAAAGAAAGAAAAA
11500114 AAAGA
1 AAAGA
11500119 GAATTAGGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 11 0.34
33 16 0.50
34 5 0.16
ACGTcount: A:0.61, C:0.07, G:0.17, T:0.14
Consensus pattern (32 bp):
AAAGACGAAAGTTTTAACAAAAGAAAGAAAAA
Found at i:11501269 original size:3 final size:3
Alignment explanation
Indices: 11501261--11501291 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
11501251 AACGGTACTC
11501261 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
11501292 GGATCTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:11506288 original size:19 final size:19
Alignment explanation
Indices: 11506266--11506312 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 19
11506256 TTAATTTAAT
11506266 CATGTTTAGTTAAAGAAAC
1 CATGTTTAGTTAAAGAAAC
11506285 CATG----GTTAAAGAAAC
1 CATGTTTAGTTAAAGAAAC
*
11506300 CATGTTTATTTAA
1 CATGTTTAGTTAA
11506313 TTGTAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 8
0.72 0.03 0.25
Matches are distributed among these distances:
15 15 0.65
19 8 0.35
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (19 bp):
CATGTTTAGTTAAAGAAAC
Found at i:11506292 original size:15 final size:15
Alignment explanation
Indices: 11506274--11506303 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11506264 ATCATGTTTA
11506274 GTTAAAGAAACCATG
1 GTTAAAGAAACCATG
11506289 GTTAAAGAAACCATG
1 GTTAAAGAAACCATG
11506304 TTTATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (15 bp):
GTTAAAGAAACCATG
Found at i:11508147 original size:16 final size:16
Alignment explanation
Indices: 11508126--11508159 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
11508116 GTTCGAAATC
11508126 TCCATTCTGTATGTAT
1 TCCATTCTGTATGTAT
11508142 TCCATTCTGTATGTAT
1 TCCATTCTGTATGTAT
11508158 TC
1 TC
11508160 ATCCCTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.50
Consensus pattern (16 bp):
TCCATTCTGTATGTAT
Found at i:11514027 original size:27 final size:27
Alignment explanation
Indices: 11513970--11514029 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
11513960 ATCTTGTCAG
* * *
11513970 CCTTTGTGGCATACTCTGAATGAATCG
1 CCTTTGGGGCATACTCTGAACGAATCA
* * *
11513997 CCTTTGGGGCATACTTTGTACGGATCA
1 CCTTTGGGGCATACTCTGAACGAATCA
11514024 CCTTTG
1 CCTTTG
11514030 TGGTGTACTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CCTTTGGGGCATACTCTGAACGAATCA
Found at i:11516191 original size:16 final size:16
Alignment explanation
Indices: 11516154--11516184 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
11516144 TTTGGTTCGT
11516154 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
11516170 TGTAATGGAATAGAG
1 TGTAATGGAATAGAG
11516185 GCGTAATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:11516234 original size:45 final size:44
Alignment explanation
Indices: 11516170--11516266 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 44
11516160 GGAATAGAGC
*
11516170 TGTAATGGAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAA
1 TGTAATGAAATAGAGGCGTAATAGT-ATTC-ATGTGTTTGGTTGAA
*
11516215 TGTAATGAAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAA
1 TGTAATGAAATAGAGGCGTAATAGTATTCATGTGTTTGGTTGAA
*
11516259 TGGAATGA
1 TGTAATGA
11516267 TGTTGTAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.48
45 24 0.50
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (44 bp):
TGTAATGAAATAGAGGCGTAATAGTATTCATGTGTTTGGTTGAA
Found at i:11516266 original size:44 final size:45
Alignment explanation
Indices: 11516173--11516266 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 45
11516163 ATAGAGCTGT
* *
11516173 AATGGAATAGAGGCGTAATAGTAATTCAATTGTTTGGTTGAATGT
1 AATGAAATAGAGGCGTAATAGTAATTCAATTGTTTGGTTGAATGG
*
11516218 AATGAAATAGAGGCGTAATAGT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGAAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
11516262 AATGA
1 AATGA
11516267 TGTTGTAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 21 0.47
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (45 bp):
AATGAAATAGAGGCGTAATAGTAATTCAATTGTTTGGTTGAATGG
Found at i:11516510 original size:37 final size:37
Alignment explanation
Indices: 11516448--11516577 Score: 109
Period size: 37 Copynumber: 3.7 Consensus size: 37
11516438 TTAATAAAAA
* *
11516448 TATAT-AATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATGAATTTTATAAAA-TCATAATATTAAATATTCT
*
11516485 TATATGAATTTTTTAAAATCATAATA-TATAATA--C-
1 TATATGAATTTTATAAAATCATAATATTA-AATATTCT
* * *
11516519 TATA--AA--ATAT-AATTCTTAATATTAAATATTCT
1 TATATGAATTTTATAAAATCATAATATTAAATATTCT
*
11516551 TATATGAATTTTCTAAAATCATAATAT
1 TATATGAATTTTATAAAATCATAATAT
11516578 GTAATACTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
29 13 0.18
30 4 0.06
31 1 0.01
32 6 0.08
34 6 0.08
35 1 0.01
36 4 0.06
37 26 0.37
38 10 0.14
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (37 bp):
TATATGAATTTTATAAAATCATAATATTAAATATTCT
Found at i:11516845 original size:15 final size:14
Alignment explanation
Indices: 11516825--11516890 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 14
11516815 ATAACACTAT
11516825 AAAATATAATTTAA
1 AAAATATAATTTAA
* *
11516839 AATA-ATAATTATTA
1 AAAATATAATT-TAA
11516853 AAAATATAATTTAGTAA
1 AAAATATAA-TT--TAA
11516870 AAATATATAATTTAA
1 AAA-ATATAATTTAA
11516885 TAAAAT
1 -AAAAT
11516891 TATTAATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
13 6 0.15
14 8 0.20
15 9 0.22
16 5 0.12
17 7 0.17
18 6 0.15
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
AAAATATAATTTAA
Found at i:11516858 original size:16 final size:17
Alignment explanation
Indices: 11516837--11516889 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
11516827 AATATAATTT
11516837 AAAATAATAA-TTATTA
1 AAAATAATAATTTATTA
*
11516853 AAAAT-ATAATTTAGTA
1 AAAATAATAATTTATTA
*
11516869 AAAATATATAATTTAATA
1 AAAATA-ATAATTTATTA
11516887 AAA
1 AAA
11516890 TTATTAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 4 0.12
16 15 0.47
18 13 0.41
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
AAAATAATAATTTATTA
Found at i:11516902 original size:18 final size:17
Alignment explanation
Indices: 11516837--11516902 Score: 64
Period size: 18 Copynumber: 3.9 Consensus size: 17
11516827 AATATAATTT
* *
11516837 AAAATAATAA-TTATTA
1 AAAATATTAATTTAATA
*
11516853 AAAATA-TAATTTAGTA
1 AAAATATTAATTTAATA
11516869 AAAATATATAATTTAATA
1 AAAATAT-TAATTTAATA
*
11516887 AAATTATTAATATTAA
1 AAAATATTAAT-TTAA
11516903 ATATTGTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
15 3 0.07
16 17 0.40
17 4 0.09
18 19 0.44
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
AAAATATTAATTTAATA
Found at i:11516946 original size:239 final size:237
Alignment explanation
Indices: 11516524--11517316 Score: 1352
Period size: 239 Copynumber: 3.3 Consensus size: 237
11516514 AATACTATAA
* * *
11516524 AATATAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATATGTAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
*
11516589 AAATATAATTTAACATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
66 AAATATAATTTAAAATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
*
11516654 TTAATATTAAATATTCTTAGAATTTACTAAAATTATAATATATAATACTATAAAATATAATTTAA
131 TTAATATTAAATATTCTTAGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAA
*
11516719 ATTAATTATTTTTAAATATACTTTAATAAAAATATATAATTT
196 ATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTT
* *
11516761 AATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
*
11516826 AAATATAATTTAAAATAATAATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAAAT
66 AAATATAATTTAAAATAATAATTATT--AAATATAATTTAATAAAAATATATAATTTAATAAAAT
* *
11516891 TATTAATATTAAATATTGTTAGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTT
129 TCTTAATATTAAATATTCTTAGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTT
11516956 AAATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTT
194 AAATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTT
11517000 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* * * *
11517065 AAATGTAATTTAAAATAATTATTATTAAATATAATTTATTTAAAATATATAATTTAATAAAATTC
66 AAATATAATTTAAAATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
* * * *
11517130 TTAATATTAAATATTCTTATATGAATTTACTATAATCATACTATATAATACTATGAAATATAATC
131 TTAATATTAAATATTC-T-TA-GAATTTACTAAAATCATAATATATAATACTATAAAATATAATT
* *
11517195 TAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
193 TAAATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTT
11517240 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
11517305 AAATATAATTTA
66 AAATATAATTTA
11517317 TAATCTACTT
Statistics
Matches: 525, Mismatches: 26, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
237 136 0.26
238 1 0.00
239 230 0.44
240 158 0.30
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (237 bp):
AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
AAATATAATTTAAAATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
TTAATATTAAATATTCTTAGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAA
ATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTT
Found at i:11517061 original size:120 final size:120
Alignment explanation
Indices: 11516524--11517316 Score: 1310
Period size: 120 Copynumber: 6.6 Consensus size: 120
11516514 AATACTATAA
* * *
11516524 AATATAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATATGTAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* *
11516589 AAATATAATTTAACATAATAATTATTAAATATAATTTAATAAAAATATATAATTT
66 AAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
*
11516644 AATAAAATTCTTAATATTAAATATTC-T-TA-GAATTTACTAAAATTATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* * *
11516706 AAATATAATTTAAATTAATTATTTTTAAATATACTTTAATAAAAATATATAATTT
66 AAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
* *
11516761 AATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* *
11516826 AAATATAATTTAAAATAATAATTATTAAAAATATAATTTAGTAAAAATATATAATTT
66 AAATATAATTTAAAATAATTATTATT--AAATATAATTTAATAAAAATATATAATTT
* *
11516883 AATAAAATTATTAATATTAAATATT-GT-TA-GAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* *
11516945 AAATATAATTTAAATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTT
66 AAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
11517000 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* * *
11517065 AAATGTAATTTAAAATAATTATTATTAAATATAATTTATTTAAAATATATAATTT
66 AAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
* * *
11517120 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTATAATCATACTATATAATACTATG
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
*
11517185 AAATATAATCTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
66 AAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
11517240 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
11517305 AAATATAATTTA
66 AAATATAATTTA
11517317 TAATCTACTT
Statistics
Matches: 622, Mismatches: 43, Indels: 16
0.91 0.06 0.02
Matches are distributed among these distances:
117 158 0.25
118 4 0.01
119 59 0.09
120 349 0.56
121 1 0.00
122 51 0.08
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
AAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
Found at i:11517100 original size:16 final size:16
Alignment explanation
Indices: 11517073--11517113 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
11517063 TAAAATGTAA
11517073 TTTAAA-ATAA-TTAT
1 TTTAAATATAATTTAT
11517087 TATTAAATATAATTTAT
1 T-TTAAATATAATTTAT
*
11517104 TTAAAATATA
1 TTTAAATATA
11517114 TAATTTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 1 0.04
15 5 0.22
16 12 0.52
17 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTAAATATAATTTAT
Found at i:11517193 original size:359 final size:357
Alignment explanation
Indices: 11516524--11517316 Score: 1306
Period size: 359 Copynumber: 2.2 Consensus size: 357
11516514 AATACTATAA
* * *
11516524 AATATAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATATGTAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
11516589 AAATATAATTTAACATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
66 AAATATAATTTAACATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
*
11516654 TTAATATTAAATATTCTTAGAATTTACTAAAATTATAATATATAATACTATAAAATATAATTTAA
131 TTAATATTAAATATTCTTAGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAA
* * *
11516719 ATTAATTATTTTTAAATATACTTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATA
196 AATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATA
*
11516784 TTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAATTTAAAATAATAATT
261 TTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAATCTAAAATAATAATT
*
11516849 ATTAAAAATATAATTTAGTAAAAATATATAATTT
326 ATT--AAATATAATTTAATAAAAATATATAATTT
* *
11516883 AATAAAATTATTAATATTAAATATT-GT-TA-GAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
* *
11516945 AAATATAATTTAA-ATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTTAATAAAATT
66 AAATATAATTTAACA-TAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATT
*
11517009 CTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATGTAAT
130 CTTAATATTAAATATTC-T-TA-GAATTTACTAAAATCATAATATATAATACTATAAAATATAAT
* *
11517074 TTAAAATAATTATTATTAAATATAATTTATTTAAAATATATAATTTAATAAAATTCTTAATATTA
192 TTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTA
* * * * *
11517139 AATATTCTTATATGAATTTACTATAATCATACTATATAATACTATGAAATATAATCTAAAATAAT
257 AATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAATCTAAAATAAT
*
11517204 TATTATTAAATATAATTTAATAAAAATATATAATTT
322 AATTATTAAATATAATTTAATAAAAATATATAATTT
11517240 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
1 AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
11517305 AAATATAATTTA
66 AAATATAATTTA
11517317 TAATCTACTT
Statistics
Matches: 403, Mismatches: 24, Indels: 13
0.92 0.05 0.03
Matches are distributed among these distances:
355 1 0.00
356 108 0.27
357 55 0.14
358 4 0.01
359 190 0.47
360 45 0.11
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (357 bp):
AATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATA
AAATATAATTTAACATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC
TTAATATTAAATATTCTTAGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAA
AATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATA
TTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAATCTAAAATAATAATT
ATTAAATATAATTTAATAAAAATATATAATTT
Found at i:11518779 original size:49 final size:49
Alignment explanation
Indices: 11518707--11518810 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
11518697 AAAAAAAAAC
* * * *
11518707 AAATTACAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
*
11518756 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAAGACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
11518805 AAATTA
1 AAATTA
11518811 TAACACATGA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
Found at i:11523535 original size:9 final size:9
Alignment explanation
Indices: 11523521--11523569 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
11523511 TTTGGTTAAA
11523521 AATTAACCG
1 AATTAACCG
*
11523530 AATTAACTG
1 AATTAACCG
11523539 AATT-ACCAG
1 AATTAACC-G
11523548 AATTAACCG
1 AATTAACCG
*
11523557 AATTAACCA
1 AATTAACCG
11523566 AATT
1 AATT
11523570 GAATTACTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 2 0.06
9 30 0.86
10 3 0.09
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:11524265 original size:26 final size:28
Alignment explanation
Indices: 11524236--11524299 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 28
11524226 ATTTATTTTA
*
11524236 AATTAATGT-AAAATAA-AGAGAAATAT
1 AATTAATGTGAAAAAAACAGAGAAATAT
11524262 AATTAATGTGGCAAAAAAAACAGAGAAATAT
1 AATTAATGT-G--AAAAAAACAGAGAAATAT
11524293 AATTAAT
1 AATTAAT
11524300 AGTTGTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 9 0.28
30 6 0.19
31 17 0.53
ACGTcount: A:0.59, C:0.03, G:0.12, T:0.25
Consensus pattern (28 bp):
AATTAATGTGAAAAAAACAGAGAAATAT
Found at i:11525620 original size:97 final size:96
Alignment explanation
Indices: 11525454--11525651 Score: 378
Period size: 97 Copynumber: 2.1 Consensus size: 96
11525444 TGTACAATCA
11525454 AGATTATTTTAATTAAATAACTCCCCACAAAGTTATATTTAAGTTAAAATAATGGCTAAAGTAAA
1 AGATTATTTTAATTAAATAACTCCCCACAAAGTTATATTTAAGTTAAAATAATGGCTAAAGTAAA
*
11525519 AAGATTGTTAATATGTGTAGAGTCTTACGGTT
66 AAGA-TGTTAATATGTGTAGAGTCTTACGATT
11525551 AGATTATTTTAATTAAATAACTCCCCACAAAGTTATATTTAAGTTAAAATAATGGCTAAAGTAAA
1 AGATTATTTTAATTAAATAACTCCCCACAAAGTTATATTTAAGTTAAAATAATGGCTAAAGTAAA
11525616 AAGATGTTAATATGTGTAGAGTCTTACGATT
66 AAGATGTTAATATGTGTAGAGTCTTACGATT
11525647 AGATT
1 AGATT
11525652 CACATATTAA
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
96 31 0.31
97 69 0.69
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (96 bp):
AGATTATTTTAATTAAATAACTCCCCACAAAGTTATATTTAAGTTAAAATAATGGCTAAAGTAAA
AAGATGTTAATATGTGTAGAGTCTTACGATT
Found at i:11527675 original size:23 final size:23
Alignment explanation
Indices: 11527645--11527693 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
11527635 TATTTGCAGC
11527645 TTTTTTCTTTT-TCATTTTTCATT
1 TTTTTTCTTTTCTCATTTTTC-TT
*
11527668 TTTTTTCTTTTCTCCTTTTTCTT
1 TTTTTTCTTTTCTCATTTTTCTT
11527691 TTT
1 TTT
11527694 CCTACTCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTTTCTTTTCTCATTTTTCTT
Found at i:11527686 original size:14 final size:13
Alignment explanation
Indices: 11527646--11527696 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
11527636 ATTTGCAGCT
*
11527646 TTTTTCTTTTTCA
1 TTTTTCTTTTTCC
*
11527659 TTTTTC-ATTT--
1 TTTTTCTTTTTCC
11527669 TTTTTCTTTTCTCC
1 TTTTTCTTTT-TCC
11527683 TTTTTCTTTTTCC
1 TTTTTCTTTTTCC
11527696 T
1 T
11527697 ACTCTAGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
10 6 0.19
11 2 0.06
12 4 0.12
13 10 0.31
14 10 0.31
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCTTTTTCC
Found at i:11530893 original size:22 final size:22
Alignment explanation
Indices: 11530861--11530914 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
11530851 GTCTTATGGA
11530861 TATCGCGATA-CAAGACCCTTTG
1 TATCGCGATACCAA-ACCCTTTG
* *
11530883 TTTGGCGATACCAAACCCTTTG
1 TATCGCGATACCAAACCCTTTG
11530905 TATCGCGATA
1 TATCGCGATA
11530915 TCTCGGGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 24 0.89
23 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (22 bp):
TATCGCGATACCAAACCCTTTG
Found at i:11534158 original size:15 final size:15
Alignment explanation
Indices: 11534134--11534167 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11534124 ACTTTATTTG
*
11534134 AATT-ATATTAGGAT
1 AATTAATATTAAGAT
11534148 AATTAATATTAAGAT
1 AATTAATATTAAGAT
11534163 AATTA
1 AATTA
11534168 TTAAGGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (15 bp):
AATTAATATTAAGAT
Found at i:11537874 original size:4 final size:4
Alignment explanation
Indices: 11537865--11537937 Score: 73
Period size: 4 Copynumber: 18.5 Consensus size: 4
11537855 CAATCCAATT
* *
11537865 TTTA TTTA TTTA TTTA TTTA CTTA TTTA -TTA TTT- TTAA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
11537911 -TTA CTTTA TTTTA TTT- TATTA TTTA TT
1 TTTA -TTTA -TTTA TTTA T-TTA TTTA TT
11537938 ACTTATTTGG
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
3 9 0.16
4 41 0.71
5 8 0.14
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:11538138 original size:22 final size:21
Alignment explanation
Indices: 11538091--11538150 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
11538081 GACCAGAATG
* *
11538091 CCTGCAGCCAAACTACCCTATT
1 CCTGCAGCC-AACCACCCTATC
*
11538113 CCTGCAGCCAACCACCGTTATC
1 CCTGCAGCCAACCACC-CTATC
* *
11538135 CCTGCACCCAAGCACC
1 CCTGCAGCCAACCACC
11538151 ACCCCTCAGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.25, C:0.47, G:0.12, T:0.17
Consensus pattern (21 bp):
CCTGCAGCCAACCACCCTATC
Found at i:11539275 original size:16 final size:15
Alignment explanation
Indices: 11539256--11539317 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
11539246 TTCCTAAAGC
11539256 ATAAAAAATATAAAAA
1 ATAAAAAA-ATAAAAA
* *
11539272 ATAAATAAAT-CAAA
1 ATAAAAAAATAAAAA
11539286 ATCAAAATAAATAAAAA
1 AT-AAAA-AAATAAAAA
* *
11539303 AGAAAAAAAGAAAAA
1 ATAAAAAAATAAAAA
11539318 GAAAAAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
14 5 0.14
15 13 0.35
16 15 0.41
17 4 0.11
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (15 bp):
ATAAAAAAATAAAAA
Found at i:11539904 original size:15 final size:15
Alignment explanation
Indices: 11539879--11539913 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
11539869 GACTCTATTT
*
11539879 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
11539893 TAATTAATATTAAGA
1 TAATTAATATTAAGA
11539908 TAATTA
1 TAATTA
11539914 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:11542439 original size:15 final size:14
Alignment explanation
Indices: 11542418--11542458 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
11542408 AATAAAAATT
11542418 AAAAACTAAGAAAA
1 AAAAACTAAGAAAA
11542432 ATAAAACTAA-AAAA
1 A-AAAACTAAGAAAA
*
11542446 AAAATCTAAGAAA
1 AAAAACTAAGAAA
11542459 TTAATAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 7 0.29
14 9 0.38
15 8 0.33
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (14 bp):
AAAAACTAAGAAAA
Found at i:11545595 original size:23 final size:25
Alignment explanation
Indices: 11545569--11545630 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 25
11545559 AGTTACATAC
*
11545569 AAAGGGAGCATTATATATC-ATT-T
1 AAAGGGAGCATTATATATCAATTAA
11545592 AAA-GGAGC-TGT-TATATCAATTAA
1 AAAGGGAGCAT-TATATATCAATTAA
11545615 AAAGGAGAGCATTATA
1 AAAGG-GAGCATTATA
11545631 CCTCCTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
21 7 0.23
22 9 0.29
23 6 0.19
24 1 0.03
25 5 0.16
26 3 0.10
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAGGGAGCATTATATATCAATTAA
Found at i:11546639 original size:15 final size:15
Alignment explanation
Indices: 11546619--11546648 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11546609 TTCACTATTA
*
11546619 TGTCTTTTGTATTTT
1 TGTCTTTAGTATTTT
11546634 TGTCTTTAGTATTTT
1 TGTCTTTAGTATTTT
11546649 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.13, T:0.70
Consensus pattern (15 bp):
TGTCTTTAGTATTTT
Found at i:11547627 original size:22 final size:23
Alignment explanation
Indices: 11547596--11547646 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
11547586 GTTCATGTGC
*
11547596 CTGTTCTTGC-AGGGAATATTTA
1 CTGTTCTTGCTAGAGAATATTTA
* *
11547618 CTGTTTTTGCTAGAGAATATTTC
1 CTGTTCTTGCTAGAGAATATTTA
11547641 CTGTTC
1 CTGTTC
11547647 ACTTGTCTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (23 bp):
CTGTTCTTGCTAGAGAATATTTA
Found at i:11547667 original size:57 final size:57
Alignment explanation
Indices: 11547599--11547720 Score: 176
Period size: 57 Copynumber: 2.1 Consensus size: 57
11547589 CATGTGCCTG
* * *
11547599 TTCTTGCAGGGAATATTTACTGTTTT--TGCTAGAGAATATTTCCTGTTCACTTGTCTT
1 TTCTTGCAGGGAATATTTACTATTTTCAT-C-AGAGAATATTTCATGTTCACTCGTCTT
*
11547656 TTCTTGTAGGGAATATTTACTATTTTCATCAGAGAATATTTCATGTTCACTCGTCTT
1 TTCTTGCAGGGAATATTTACTATTTTCATCAGAGAATATTTCATGTTCACTCGTCTT
11547713 TTCTTGCA
1 TTCTTGCA
11547721 TCAATTTTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
57 56 0.97
58 1 0.02
59 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (57 bp):
TTCTTGCAGGGAATATTTACTATTTTCATCAGAGAATATTTCATGTTCACTCGTCTT
Found at i:11557347 original size:6 final size:6
Alignment explanation
Indices: 11557336--11557363 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
11557326 AGGTTTCTAA
11557336 AAATGG AAATGG AAATGG AAATGG AAAT
1 AAATGG AAATGG AAATGG AAATGG AAAT
11557364 TTGTAATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:11558939 original size:6 final size:6
Alignment explanation
Indices: 11558928--11558982 Score: 67
Period size: 6 Copynumber: 9.0 Consensus size: 6
11558918 AACAAAATAG
**
11558928 ATAAAT ATAAAT ATAAAT ATAAATAT ATAAAT ATTTAT ATAAAT A-AAAT
1 ATAAAT ATAAAT ATAAAT AT-AA-AT ATAAAT ATAAAT ATAAAT ATAAAT
11558977 ATAAAT
1 ATAAAT
11558983 GGAACAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
5 5 0.12
6 29 0.69
7 4 0.10
8 4 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
ATAAAT
Found at i:11558958 original size:26 final size:25
Alignment explanation
Indices: 11558921--11558979 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
11558911 TTAGTGAAAC
*
11558921 AAAATAGATAAATATAAATATAAAT
1 AAAATATATAAATATAAATATAAAT
**
11558946 ATAAATATATAAATATTTATATAAAT
1 A-AAATATATAAATATAAATATAAAT
11558972 AAAATATA
1 AAAATATA
11558980 AATGGAACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 8 0.27
26 22 0.73
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (25 bp):
AAAATATATAAATATAAATATAAAT
Found at i:11562692 original size:84 final size:83
Alignment explanation
Indices: 11562503--11562758 Score: 304
Period size: 84 Copynumber: 3.1 Consensus size: 83
11562493 AAATTATATC
* * * * *
11562503 AAAATCAAATTAAAATC-TGTTAAACGGC-AGGAATAAATCTCGAAACAGA-ATTATATGATTAC
1 AAAATCAAA-TAAAATCTTGTTAAATGGCGA-GAATAAATCCCGAAACAGATTTTATTTAATT-C
* ** * *
11562565 -GTCTTTTTTGGAAACAAAAC
63 TATCTAATTTAGAAACAAAAT
* * *
11562585 AATATCGAATAAAATCTTTTTAAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAATTCTAT
1 AAAATCAAATAAAATCTTGTTAAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAATTCTAT
11562650 CCTAATTTAGAAACAAAAT
66 -CTAATTTAGAAACAAAAT
* *
11562669 AAAATCAAATAAAATCTTGTTAAATGGCGGGAATAAATCCCAAAACAGATTTTATTTAATTCTAT
1 AAAATCAAATAAAATCTTGTTAAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAATTCTA-
11562734 TCTAATTTAGAAACAAAAT
65 TCTAATTTAGAAACAAAAT
11562753 AAAATC
1 AAAATC
11562759 TTGTTAAACG
Statistics
Matches: 150, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
81 7 0.05
82 35 0.23
83 10 0.07
84 97 0.65
85 1 0.01
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.31
Consensus pattern (83 bp):
AAAATCAAATAAAATCTTGTTAAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAATTCTAT
CTAATTTAGAAACAAAAT
Found at i:11562801 original size:5 final size:5
Alignment explanation
Indices: 11562791--11562819 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
11562781 CCCGAAATAG
11562791 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
11562820 CTCGTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:11562940 original size:79 final size:81
Alignment explanation
Indices: 11562811--11563141 Score: 312
Period size: 78 Copynumber: 4.1 Consensus size: 81
11562801 ATTTTATTTT
* * * * **
11562811 ATTTTA-TTT-CTCGTTTTTGGCAACAAAATCAAAA--TGTAAT-AAATCTGTTGAACGGTGGGA
1 ATTTTATTTTACTCGTTTTTGGAAATAAAATCAAAATTTGAAATAAAATCAGTTGAACGACGGGA
*
11562871 AT-AACTCCTGAAATGG
66 ATCAA-TCCTGAAACGG
*
11562887 ATTTTATTTTACTCGTTTTTGGAAATAAAA-CAAAATTTGAAATAAAATC-GTTGAAC-ATGGGA
1 ATTTTATTTTACTCGTTTTTGGAAATAAAATCAAAATTTGAAATAAAATCAGTTGAACGACGGGA
*
11562949 ATCAATCCCGAAACGG
66 ATCAATCCTGAAACGG
* * * *
11562965 ATTTTATTTTACTTGTTTTTCGAAATAAAA-CAAAATTTGGAATAAAATC-GTTAAACGACGGGA
1 ATTTTATTTTACTCGTTTTTGGAAATAAAATCAAAATTTGAAATAAAATCAGTTGAACGACGGGA
11563028 ATCAATCCTGAAACGG
66 ATCAATCCTGAAACGG
*
11563044 ATTTTATTTACCTTTAATTTCTCG--TTTGGAAATAAAATCAAAATAAT-AGAATAAAATCAGTT
1 ATTTTA--T---TTT-A---CTCGTTTTTGGAAATAAAATCAAAAT-TTGA-AATAAAATCAGTT
* *
11563106 GAACGGCGGGAATAAATCCTGAAACGG
55 GAACGACGGGAATCAATCCTGAAACGG
11563133 ATTTTATTT
1 ATTTTATTT
11563142 ACTTTTAATT
Statistics
Matches: 216, Mismatches: 19, Indels: 32
0.81 0.07 0.12
Matches are distributed among these distances:
76 6 0.03
77 8 0.04
78 85 0.39
79 40 0.19
80 5 0.02
81 1 0.00
84 5 0.02
85 1 0.00
86 12 0.06
87 7 0.03
88 13 0.06
89 33 0.15
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (81 bp):
ATTTTATTTTACTCGTTTTTGGAAATAAAATCAAAATTTGAAATAAAATCAGTTGAACGACGGGA
ATCAATCCTGAAACGG
Found at i:11563134 original size:89 final size:86
Alignment explanation
Indices: 11562986--11563152 Score: 253
Period size: 89 Copynumber: 1.9 Consensus size: 86
11562976 CTTGTTTTTC
* * *
11562986 GAAATAAAACAAAATTTGGAATAAAATCGTTAAACGACGGGAATCAATCCTGAAACGGATTTTAT
1 GAAATAAAACAAAATATAGAATAAAATCGTTAAACGACGGGAATAAATCCTGAAACGGATTTTAT
11563051 TTACCTTTAATTTCTCGTTTG
66 TTACCTTTAATTTCTCGTTTG
* *
11563072 GAAATAAAATCAAAATAATAGAATAAAATCAGTTGAACGGCGGGAATAAATCCTGAAACGGATTT
1 GAAATAAAA-CAAAAT-ATAGAATAAAATC-GTTAAACGACGGGAATAAATCCTGAAACGGATTT
*
11563137 TATTTACTTTTAATTT
63 TATTTACCTTTAATTT
11563153 TGGAAACAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
86 9 0.12
87 6 0.08
88 11 0.15
89 46 0.64
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (86 bp):
GAAATAAAACAAAATATAGAATAAAATCGTTAAACGACGGGAATAAATCCTGAAACGGATTTTAT
TTACCTTTAATTTCTCGTTTG
Found at i:11570555 original size:27 final size:27
Alignment explanation
Indices: 11570517--11570571 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
11570507 GGGTCATTTG
*
11570517 TCTTTATCGTAAATGACTTGATTACCA
1 TCTTTATCGTAAAAGACTTGATTACCA
*
11570544 TCTTTATGGTAAAAGACTTGATTACCA
1 TCTTTATCGTAAAAGACTTGATTACCA
11570571 T
1 T
11570572 TTGATAGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (27 bp):
TCTTTATCGTAAAAGACTTGATTACCA
Found at i:11582737 original size:13 final size:13
Alignment explanation
Indices: 11582716--11582752 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
11582706 TACAAAATAG
*
11582716 TCTTCTTCTTTTT
1 TCTTTTTCTTTTT
11582729 TCTTTTTCTTTTT
1 TCTTTTTCTTTTT
11582742 T-TTTTT-TTTTT
1 TCTTTTTCTTTTT
11582753 GCTTGTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 5 0.22
12 5 0.22
13 13 0.57
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TCTTTTTCTTTTT
Found at i:11582751 original size:16 final size:16
Alignment explanation
Indices: 11582718--11582749 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
11582708 CAAAATAGTC
11582718 TTCTTCTTTTTTCTTT
1 TTCTTCTTTTTTCTTT
11582734 TTCTT-TTTTTT-TTT
1 TTCTTCTTTTTTCTTT
11582748 TT
1 TT
11582750 TTTGCTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 6 0.38
16 5 0.31
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTCTTCTTTTTTCTTT
Found at i:11585616 original size:3 final size:3
Alignment explanation
Indices: 11585610--11585638 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11585600 CAGTAAAAAA
11585610 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
11585639 ATTGTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:11587275 original size:51 final size:51
Alignment explanation
Indices: 11587217--11587688 Score: 352
Period size: 46 Copynumber: 9.8 Consensus size: 51
11587207 TAATTTGTAA
* * * *
11587217 CTTTAATCTATTCCACTACAACGCTAGGGAAATAAGATTCGTTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* * * * * *
11587268 CTTTAATCTGTTCCACAGCGACGCTAAAGAAGTAAGATTCACTACCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* * *
11587319 CTTTAATC---T--ACTGCAATG-TCAGGGAAA-AAGATTCGCTGCCTTCAA
1 CTTTAATCTGTTCCACTGCAACGCT-AAGGAAATAAGATTCGCTGCCTTCAG
* * * * *
11587364 CTTTAATCTGTCCCACTGCAACGCCAAGGAAAAAAAATTCACTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* * * * * *
11587415 CTTTAATC---T--ACTGCAATGTTAGGGAAATAAGATTCGTTGCTTTCAT
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* * * * * *
11587461 CTTTAATTTGTTCCAC-GCAACGCCAAGGAAAAAAGATGCGATGCCTTTAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* * * *
11587511 CTTTAATC---T--ATTGTAATGCCAAGGAAATAAGATTCGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* * ** * *
11587557 TTTTAATC---T--ACTACAATACCAGGGAAATAAGATTCGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
*
11587603 CTTTAATC---T--ACTGCAACGCTAGGGAAATAAGATTCGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
* *
11587649 CTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTC
1 CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTC
11587689 ACCATAATGA
Statistics
Matches: 332, Mismatches: 70, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
45 25 0.08
46 161 0.48
47 1 0.00
48 1 0.00
49 2 0.01
50 45 0.14
51 97 0.29
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (51 bp):
CTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCGCTGCCTTCAG
Found at i:11587359 original size:96 final size:97
Alignment explanation
Indices: 11587242--11587690 Score: 522
Period size: 96 Copynumber: 4.7 Consensus size: 97
11587232 CTACAACGCT
* * * * *
11587242 AGGGAAATAAGATTCGTTGCCTTCAGCTTTAATCTGTTCCACAGCGACGCTAAAGAAGTAAGATT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACAGCAACGCCAAGGAAATAAGATT
*
11587307 CACTACCTTCAGCTTTAATCTACTGCAATGTC
66 CACTGCCTTCAGCTTTAATCTACTGCAATGTC
* * * * *
11587339 AGGGAAA-AAGATTCGCTGCCTTCAACTTTAATCTGTCCCACTGCAACGCCAAGGAAAAAAAATT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACAGCAACGCCAAGGAAATAAGATT
*
11587403 CACTGCCTTCAGCTTTAATCTACTGCAATGTT
66 CACTGCCTTCAGCTTTAATCTACTGCAATGTC
* * * * * *
11587435 AGGGAAATAAGATTCGTTGCTTTCATCTTTAATTTGTTCCAC-GCAACGCCAAGGAAAAAAGATG
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACAGCAACGCCAAGGAAATAAGATT
* * * *
11587499 CGA-TGCCTTTAGCTTTAATCTATTGTAATGCC
66 C-ACTGCCTTCAGCTTTAATCTACTGCAATGTC
* * ** *
11587531 AAGGAAATAAGATTCGCTGCCTTCAGTTTTAATC---T--ACTA-CAATACCAGGGAAATAAGAT
1 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC-AGCAACGCCAAGGAAATAAGAT
* *
11587590 TCGCTGCCTTCAGCTTTAATCTACTGCAACG-C
65 TCACTGCCTTCAGCTTTAATCTACTGCAATGTC
**
11587622 TAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGAT
1 -AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACAGCAACGCCAAGGAAATAAGAT
11587687 TCAC
65 TCAC
11587691 CATAATGACT
Statistics
Matches: 292, Mismatches: 48, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
91 3 0.01
92 72 0.25
93 1 0.00
95 1 0.00
96 157 0.54
97 58 0.20
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (97 bp):
AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACAGCAACGCCAAGGAAATAAGATT
CACTGCCTTCAGCTTTAATCTACTGCAATGTC
Found at i:11587708 original size:142 final size:141
Alignment explanation
Indices: 11587300--11587690 Score: 418
Period size: 142 Copynumber: 2.8 Consensus size: 141
11587290 GCTAAAGAAG
* * * *
11587300 TAAGATTCACTACCTTCAGCTTTAATCTACTGCAATG-TCAGGGAAAAAGATTCGCTGCCTTCAA
1 TAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCT-AGGGAAAAAGATTCGCTGCCTTCAG
* * * * *
11587364 CTTTAATCTGTCCCACTGCAACGCCAAGGAAAAAAAATTCACTGCCTTCAGCTTTAATCTACTGC
65 CTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTCAC-GCCTTCAGCTTTAATCTACTAC
***
11587429 AATGTTAGGGAAA
129 AATACCAGGGAAA
* * * * * * * *
11587442 TAAGATTCGTTGCTTTCATCTTTAATTTGTTCCAC-GCAACGCCAAGGAAAAAAGATGCGATGCC
1 TAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCAACG-CTAGGGAAAAAGATTCGCTGCC
* * * * *
11587506 TTTAGCTTTAATC---T--ATTGTAATGCCAAGGAAATAAGATTCGCTGCCTTCAGTTTTAATCT
60 TTCAGCTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTCAC-GCCTTCAGCTTTAATCT
11587566 ACTACAATACCAGGGAAA
124 ACTACAATACCAGGGAAA
11587584 TAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCTAGGGAAATAAGATTCGCTGCCTTCAG
1 TAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCTAGGGAAA-AAGATTCGCTGCCTTCAG
11587649 CTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTCAC
65 CTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTCAC
11587691 CATAATGACT
Statistics
Matches: 198, Mismatches: 37, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
137 11 0.06
138 29 0.15
141 1 0.01
142 95 0.48
143 25 0.13
146 5 0.03
147 32 0.16
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (141 bp):
TAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCTAGGGAAAAAGATTCGCTGCCTTCAGC
TTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTCACGCCTTCAGCTTTAATCTACTACAA
TACCAGGGAAA
Found at i:11589013 original size:45 final size:45
Alignment explanation
Indices: 11588949--11589036 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
11588939 TTTTCTTTTT
*
11588949 TTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTTACCTTGGTCTC
1 TTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCTC
*
11588994 TTTTTAGGACTCAAAGCGCCCTTTGTGGGTTTTCACCTTGGTC
1 TTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
11589037 CCTTCTCCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.40
Consensus pattern (45 bp):
TTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCTC
Found at i:11601759 original size:19 final size:19
Alignment explanation
Indices: 11601734--11601786 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
11601724 TTTTAAAACA
11601734 ATTTTAACTTGATTGAAA-
1 ATTTTAACTTGATTGAAAT
**
11601752 ATTTTTAACTCAATTGAAAT
1 A-TTTTAACTTGATTGAAAT
11601772 CATTTTAACTTGATT
1 -ATTTTAACTTGATT
11601787 TCATCATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.04
19 15 0.54
20 11 0.39
21 1 0.04
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (19 bp):
ATTTTAACTTGATTGAAAT
Found at i:11604129 original size:101 final size:101
Alignment explanation
Indices: 11603954--11604191 Score: 350
Period size: 101 Copynumber: 2.4 Consensus size: 101
11603944 TTCATCCTTC
* * * * *
11603954 ACATTCGTATTGCCATAACCCAATTATGTTCTTATCAACAAAATGCCATAGCCCAGCTATGGTCT
1 ACATTCATAGTGCCATAACCCAGTTATGGTCTTATCAACAAAATGCCATAGCCCAACTATGGTCT
* *
11604019 TCCATATAAACACTGCCATGGTCCAACCATGGTCTT
66 TACATATAAACACTACCATGGTCCAACCATGGTCTT
* * * * *
11604055 ACATTCATAGTGCCCTAACCCAGTTATGGTCTTATCATCAGAATGTCATAGTCCAACTATGGTCT
1 ACATTCATAGTGCCATAACCCAGTTATGGTCTTATCAACAAAATGCCATAGCCCAACTATGGTCT
11604120 TACATATAAACACTACCATGGTCCAACCATGGTCTT
66 TACATATAAACACTACCATGGTCCAACCATGGTCTT
* *
11604156 ACGTTCATAGTGCCATAACCTAGTTATGGTCTTATC
1 ACATTCATAGTGCCATAACCCAGTTATGGTCTTATC
11604192 CGTCAATTCA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 122 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (101 bp):
ACATTCATAGTGCCATAACCCAGTTATGGTCTTATCAACAAAATGCCATAGCCCAACTATGGTCT
TACATATAAACACTACCATGGTCCAACCATGGTCTT
Found at i:11604310 original size:2 final size:2
Alignment explanation
Indices: 11604303--11604331 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11604293 CAACAATGGA
11604303 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
11604332 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:11608943 original size:33 final size:33
Alignment explanation
Indices: 11608906--11609065 Score: 108
Period size: 33 Copynumber: 4.8 Consensus size: 33
11608896 ACATTCGTAT
* *
11608906 TGCCATAACCCAATTATTGTCTTATAATCATAA
1 TGCCATAACCCAATTATGGTCTTACAATCATAA
* ** *
11608939 TGCCATAGCCCAGCTATGGTCTTACATAT-AAACA
1 TGCCATAACCCAATTATGGTCTTACA-ATCATA-A
*** * * * *
11608973 CTGCCATGGTCCAATCATAGTCTTACATTCATAG
1 -TGCCATAACCCAATTATGGTCTTACAATCATAA
* * *
11609007 TGTCATAACCCAGTTATGGTCTTATC-ATCAGAA
1 TGCCATAACCCAATTATGGTCTTA-CAATCATAA
* *
11609040 TGCCATAACCCAACTATGGTTTTACA
1 TGCCATAACCCAATTATGGTCTTACA
11609066 TATAAACACT
Statistics
Matches: 92, Mismatches: 29, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
32 1 0.01
33 64 0.70
34 5 0.05
35 22 0.24
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.32
Consensus pattern (33 bp):
TGCCATAACCCAATTATGGTCTTACAATCATAA
Found at i:11608979 original size:35 final size:34
Alignment explanation
Indices: 11608939--11609098 Score: 94
Period size: 35 Copynumber: 4.7 Consensus size: 34
11608929 ATAATCATAA
*
11608939 TGCCATAGCCCAGCTATGGTCTTACATATAAACAC
1 TGCCATAGCCCAACTATGGTCTTACAT-TAAACAC
* * * * * *
11608974 TGCCATGGTCCAA-TCATAGTCTTACATT-CATAG
1 TGCCATAGCCCAACT-ATGGTCTTACATTAAACAC
* * ** * *
11609007 TGTCATAACCCAGTTATGGTCTTATCATCAGA-A-
1 TGCCATAGCCCAACTATGGTCTTA-CATTAAACAC
* *
11609040 TGCCATAACCCAACTATGGTTTTACATATAAACAC
1 TGCCATAGCCCAACTATGGTCTTACAT-TAAACAC
* * *
11609075 TGCCATGGTCCAACCATGGTCTTA
1 TGCCATAGCCCAACTATGGTCTTA
11609099 TGTTCATAGT
Statistics
Matches: 92, Mismatches: 26, Indels: 14
0.70 0.20 0.11
Matches are distributed among these distances:
32 3 0.03
33 40 0.43
34 8 0.09
35 41 0.45
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (34 bp):
TGCCATAGCCCAACTATGGTCTTACATTAAACAC
Found at i:11609069 original size:101 final size:101
Alignment explanation
Indices: 11608894--11609138 Score: 346
Period size: 101 Copynumber: 2.4 Consensus size: 101
11608884 AATTCATCCT
* * * * * * * *
11608894 TTACATTCGTATTGCCATAACCCAATTATTGTCTTATAATCATAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
*
11608959 CTTACATATAAACACTGCCATGGTCCAATCATAGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATAGTC
*
11608995 TTACATTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
* *
11609060 TTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATAGTC
** *
11609096 TTATGTTCATAGTGCCATAACCTAGTTATGGTCTTATCCATCA
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTAT-CATCA
11609139 ATTCATCATT
Statistics
Matches: 127, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 122 0.96
102 5 0.04
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (101 bp):
TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
CTTACATATAAACACTGCCATGGTCCAACCATAGTC
Found at i:11610863 original size:24 final size:24
Alignment explanation
Indices: 11610836--11610896 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
11610826 AAATTATCAA
11610836 TTTGAGTTTTAAATATTAACGGGT
1 TTTGAGTTTTAAATATTAACGGGT
* * *
11610860 TTTGGGTTTTAAATTTTAATGGGT
1 TTTGAGTTTTAAATATTAACGGGT
* *
11610884 TTAGACTTTTAAA
1 TTTGAGTTTTAAA
11610897 AATATTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.49
Consensus pattern (24 bp):
TTTGAGTTTTAAATATTAACGGGT
Found at i:11625068 original size:9 final size:9
Alignment explanation
Indices: 11625054--11625126 Score: 85
Period size: 9 Copynumber: 8.1 Consensus size: 9
11625044 TGATTAAAAA
11625054 TAACCGAAT
1 TAACCGAAT
11625063 TAACCGAAT
1 TAACCGAAT
*
11625072 TACCCGAAT
1 TAACCGAAT
*
11625081 TAATCGAAT
1 TAACCGAAT
* *
11625090 TAATCGGAT
1 TAACCGAAT
11625099 T-ACCTGAAT
1 TAACC-GAAT
*
11625108 TAACTGAAT
1 TAACCGAAT
11625117 TAACCGAAT
1 TAACCGAAT
11625126 T
1 T
11625127 GAATCACTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
8 2 0.04
9 50 0.93
10 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (9 bp):
TAACCGAAT
Found at i:11627248 original size:15 final size:15
Alignment explanation
Indices: 11627228--11627266 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
11627218 TGGAATGTTT
11627228 TTTTGTTACTTCTGA
1 TTTTGTTACTTCTGA
*
11627243 TTTTGTTACTTCTTA
1 TTTTGTTACTTCTGA
11627258 TTATTGTTA
1 TT-TTGTTA
11627267 TTATATTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.10, G:0.10, T:0.64
Consensus pattern (15 bp):
TTTTGTTACTTCTGA
Found at i:11627452 original size:20 final size:20
Alignment explanation
Indices: 11627427--11627465 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11627417 TAAATACTAC
*
11627427 ATATTAGACCATGGTTCTAA
1 ATATTAGACCATAGTTCTAA
*
11627447 ATATTATACCATAGTTCTA
1 ATATTAGACCATAGTTCTA
11627466 TAAAATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (20 bp):
ATATTAGACCATAGTTCTAA
Found at i:11631575 original size:18 final size:18
Alignment explanation
Indices: 11631554--11631649 Score: 95
Period size: 18 Copynumber: 5.1 Consensus size: 18
11631544 TTGCATACAT
*
11631554 ATATAGGGGTTCTCATAC
1 ATATAGGGGTTCACATAC
**
11631572 ATATAATGGTTCACTTATAC
1 ATATAGGGGTTCAC--ATAC
*
11631592 ATAAAGGGGTTCACATAC
1 ATATAGGGGTTCACATAC
*
11631610 ATATGAGGGTTTC-CATAC
1 ATAT-AGGGGTTCACATAC
11631628 ATATAGAGGGGTTCACATAC
1 ATAT--AGGGGTTCACATAC
11631648 AT
1 AT
11631650 CGCATACATA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
18 27 0.42
19 15 0.23
20 22 0.34
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (18 bp):
ATATAGGGGTTCACATAC
Found at i:11631577 original size:38 final size:37
Alignment explanation
Indices: 11631534--11631649 Score: 119
Period size: 38 Copynumber: 3.1 Consensus size: 37
11631524 TTGCATACAT
* *
11631534 ATATAAGGCTTTGCATACATATATAGGGGTTCTCATAC
1 ATATAAGG-TTTACATACATATATAGGGGTTCACATAC
*
11631572 ATATAATGGTTCACTTATACATA-A-AGGGGTTCACATAC
1 ATATAA-GGTTTAC--ATACATATATAGGGGTTCACATAC
* * *
11631610 ATATGAGGGTTTCCATACATATAGAGGGGTTCACATAC
1 ATAT-AAGGTTTACATACATATATAGGGGTTCACATAC
11631648 AT
1 AT
11631650 CGCATACATA
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
36 7 0.11
37 1 0.02
38 47 0.71
39 4 0.06
40 7 0.11
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.32
Consensus pattern (37 bp):
ATATAAGGTTTACATACATATATAGGGGTTCACATAC
Found at i:11631646 original size:20 final size:19
Alignment explanation
Indices: 11631507--11631649 Score: 114
Period size: 20 Copynumber: 7.5 Consensus size: 19
11631497 CATAAGGATC
*
11631507 CACATATATATAA-GGGTT
1 CACATACATATAAGGGGTT
** * *
11631525 TGCATACATATATAAGGCTT
1 CACATACATATA-AGGGGTT
**
11631545 TGCATACATATATAGGGGTT
1 CACATACATATA-AGGGGTT
* *
11631565 CTCATACATATAA-TGGTT
1 CACATACATATAAGGGGTT
11631583 CACTTATACATA-AAGGGGTT
1 CAC--ATACATATAAGGGGTT
* *
11631603 CACATACATATGAGGGTTT
1 CACATACATATAAGGGGTT
11631622 C-CATACATATAGAGGGGTT
1 CACATACATATA-AGGGGTT
11631641 CACATACAT
1 CACATACAT
11631650 CGCATACATA
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
18 31 0.30
19 18 0.18
20 53 0.52
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (19 bp):
CACATACATATAAGGGGTT
Found at i:11631678 original size:47 final size:45
Alignment explanation
Indices: 11631605--11631694 Score: 119
Period size: 47 Copynumber: 2.0 Consensus size: 45
11631595 AAGGGGTTCA
*
11631605 CATACATATGAGGGTTTCCATACATATAGAGGGGTTCACATACATCG
1 CATACATATAAGGGTTTCCATACATATA-A-GGGTTCACATACATCG
* *
11631652 CATACATATAAGGG-TTCGTATGCATATAAGGGTTCACATACAT
1 CATACATATAAGGGTTTC-CATACATATAAGGGTTCACATACAT
11631695 ATATTGTAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
45 14 0.36
46 4 0.10
47 21 0.54
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (45 bp):
CATACATATAAGGGTTTCCATACATATAAGGGTTCACATACATCG
Found at i:11631695 original size:18 final size:18
Alignment explanation
Indices: 11631652--11631697 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
11631642 ACATACATCG
*
11631652 CATACATATAAGGGTTCG
1 CATACATATAAGGGTTCA
* *
11631670 TATGCATATAAGGGTTCA
1 CATACATATAAGGGTTCA
11631688 CATACATATA
1 CATACATATA
11631698 TTGTAACAGC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (18 bp):
CATACATATAAGGGTTCA
Found at i:11643191 original size:18 final size:16
Alignment explanation
Indices: 11643153--11643191 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
11643143 CAGAGGTAGT
11643153 ACAACAGAACAAAGAA
1 ACAACAGAACAAAGAA
11643169 A-AACAGAACAAAGCAGA
1 ACAACAGAACAAAG-A-A
11643186 ACAACA
1 ACAACA
11643192 CAATTCAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 12 0.60
16 2 0.10
17 2 0.10
18 4 0.20
ACGTcount: A:0.67, C:0.21, G:0.13, T:0.00
Consensus pattern (16 bp):
ACAACAGAACAAAGAA
Found at i:11643276 original size:30 final size:30
Alignment explanation
Indices: 11643242--11643307 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
11643232 AGGATGGAAT
*
11643242 AGAGCAGAGCAATAC-TGAACAGAACAGAAC
1 AGAGCAGAGCAAAACAT-AACAGAACAGAAC
* *
11643272 AGAGCATAGCAAAACATAATAGAACAGAAC
1 AGAGCAGAGCAAAACATAACAGAACAGAAC
11643302 AGAGCA
1 AGAGCA
11643308 TGTATGTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 31 0.97
31 1 0.03
ACGTcount: A:0.53, C:0.18, G:0.21, T:0.08
Consensus pattern (30 bp):
AGAGCAGAGCAAAACATAACAGAACAGAAC
Found at i:11643945 original size:15 final size:17
Alignment explanation
Indices: 11643925--11643956 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
11643915 ATAATACAAA
11643925 TCGTACA-TT-GATAAT
1 TCGTACACTTAGATAAT
11643940 TCGTACACTTAGATAAT
1 TCGTACACTTAGATAAT
11643957 AGCACGTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (17 bp):
TCGTACACTTAGATAAT
Found at i:11644389 original size:42 final size:42
Alignment explanation
Indices: 11644312--11644391 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
11644302 GTTACACGGC
*
11644312 TTGGACACAAGCCCATGTCCTTGCCCGTATGGCTCACACAGT
1 TTGGACACAAGCCCATGGCCTTGCCCGTATGGCTCACACAGT
* * * * *
11644354 TTGGGCACACGCCTATGGCCTTGCCTGTGTGGCTCACA
1 TTGGACACAAGCCCATGGCCTTGCCCGTATGGCTCACA
11644392 TGGCCTAAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (42 bp):
TTGGACACAAGCCCATGGCCTTGCCCGTATGGCTCACACAGT
Found at i:11649559 original size:22 final size:22
Alignment explanation
Indices: 11649517--11649559 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
11649507 GGCATTAGTG
*
11649517 TAATTTTTAAAGTTAATTAATGT
1 TAATTTTTAAAG-TAAGTAATGT
11649540 TAATTTTGTAAA-TAAGTAAT
1 TAATTTT-TAAAGTAAGTAAT
11649560 AAATGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.39
23 7 0.39
24 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (22 bp):
TAATTTTTAAAGTAAGTAATGT
Found at i:11650482 original size:25 final size:25
Alignment explanation
Indices: 11650440--11650509 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
11650430 AGCTTACTGA
* * * *
11650440 TATTCAGCTTGCATGAGCTTATCAT
1 TATTCAGCTCGAAAGAGCTTACCAT
* *
11650465 TATTCAGTTCGAAAGAGCTTACCGT
1 TATTCAGCTCGAAAGAGCTTACCAT
* *
11650490 TATTTAGCTCGAAGGAGCTT
1 TATTCAGCTCGAAAGAGCTT
11650510 GCTGTTTACA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (25 bp):
TATTCAGCTCGAAAGAGCTTACCAT
Found at i:11656125 original size:16 final size:15
Alignment explanation
Indices: 11656104--11656133 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
11656094 AGCTTAACAA
11656104 TTTAATATTCATTAAT
1 TTTAATATT-ATTAAT
11656120 TTTAATATTATTAA
1 TTTAATATTATTAA
11656134 CATTAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAATATTATTAAT
Found at i:11656524 original size:16 final size:16
Alignment explanation
Indices: 11656503--11656533 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11656493 ATATTACTAT
*
11656503 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
11656519 TATTTAATATTAAAA
1 TATTTAATATTAAAA
11656534 TAATAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:11658723 original size:22 final size:23
Alignment explanation
Indices: 11658691--11658752 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
11658681 CTGCCATATT
*
11658691 TATACACATGCAT-TTTT-CATA
1 TATACATATGCATATTTTCCATA
11658712 TAGTACATATGCATATTTTCCATA
1 TA-TACATATGCATATTTTCCATA
11658736 TATA-ATATGCATATTTT
1 TATACATATGCATATTTT
11658753 TAAGTTTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 2 0.05
22 23 0.62
23 6 0.16
24 6 0.16
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (23 bp):
TATACATATGCATATTTTCCATA
Found at i:11661077 original size:19 final size:20
Alignment explanation
Indices: 11661037--11661080 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
11661027 GTCTCTTTTC
* *
11661037 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
11661056 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
11661075 GCATTA
1 GCATTA
11661081 AACACCTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:11662980 original size:18 final size:18
Alignment explanation
Indices: 11662957--11663000 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
11662947 TTGAGCAAAT
11662957 ATTCTTTCATTCTTTACG
1 ATTCTTTCATTCTTTACG
**
11662975 ATTCTTTCATTCTTTTGG
1 ATTCTTTCATTCTTTACG
11662993 ATTCTTTC
1 ATTCTTTC
11663001 TGCCAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.20, G:0.07, T:0.59
Consensus pattern (18 bp):
ATTCTTTCATTCTTTACG
Found at i:11665205 original size:45 final size:45
Alignment explanation
Indices: 11665146--11665462 Score: 298
Period size: 45 Copynumber: 7.1 Consensus size: 45
11665136 AGCAGGCTGT
*
11665146 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
* * * *** * * **
11665191 GAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGTGAAATAGATC
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
*
11665235 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
* * * *** * * *
11665280 GAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
* * *
11665324 AGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATT
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
* * *** * * *
11665369 AAAGAAAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
* *
11665413 AAATATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
1 AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
11665458 GAAAG
1 -AAAG
11665463 CAGATCGAAG
Statistics
Matches: 202, Mismatches: 66, Indels: 7
0.73 0.24 0.03
Matches are distributed among these distances:
44 99 0.49
45 100 0.50
46 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (45 bp):
AAAGAAACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
Found at i:11665249 original size:44 final size:44
Alignment explanation
Indices: 11665181--11665605 Score: 298
Period size: 44 Copynumber: 9.3 Consensus size: 44
11665171 TACTGGTGGC
* * *
11665181 GAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
* * * * *** * *
11665225 GAAATAGATCAAAGATACCAGATCTTGCCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGG-CGT
* * *
11665270 GAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
* * * * *** * *
11665314 GAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGG-CGT
* *
11665359 GAAGCAGATTAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
* * * * *
11665403 GAAGTAGATCAAATATACCAGATCTTGCCTTCCCATACTGGTGGC-GAAGCAGAT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTT--C--A-T-GT-ACTG--GC-G-T
* *
11665457 CGAAAGCAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
1 -G-AAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
* * *
11665503 GAAGTAGATCAAAG-AAACAGATCTTGTCTCCCTATACTAGTG-GT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACT-G-GCGT
* * * * * *
11665547 GGAGTAGATCGAAGAAAATAGATCTTATCTTCATGTATTGACGT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
11665591 GAAGTAGATCAAAGA
1 GAAGTAGATCAAAGA
11665606 TAGCATGTCA
Statistics
Matches: 287, Mismatches: 74, Indels: 40
0.72 0.18 0.10
Matches are distributed among these distances:
43 21 0.07
44 133 0.46
45 86 0.30
46 2 0.01
47 1 0.00
48 3 0.01
49 2 0.01
50 6 0.02
51 2 0.01
52 3 0.01
53 1 0.00
54 2 0.01
55 1 0.00
56 24 0.08
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
Found at i:11665297 original size:89 final size:89
Alignment explanation
Indices: 11665146--11665460 Score: 576
Period size: 89 Copynumber: 3.5 Consensus size: 89
11665136 AGCAGGCTGT
11665146 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
*
11665211 TCATGTACTGGCGTGAAATAGATC
66 TCATGTACTGGCGTGAAGTAGATC
11665235 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
11665300 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* ** *
11665324 AGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATTAAAGAAAACAGATCTTGTCT
1 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
11665389 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
*
11665413 AAATATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA
1 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA
11665461 AGCAGATCGA
Statistics
Matches: 217, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 217 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (89 bp):
AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
TCATGTACTGGCGTGAAGTAGATC
Found at i:11665447 original size:178 final size:182
Alignment explanation
Indices: 11665146--11665607 Score: 666
Period size: 178 Copynumber: 2.5 Consensus size: 182
11665136 AGCAGGCTGT
*
11665146 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTCT
*
11665211 TCATGTACTGGCGTGAAATAGATCAAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCA
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCA
11665276 GATCG-A-AGA-AAG-CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
131 GATCGAACAGACAAGACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
* **
11665324 AGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATTAAAGAAAACAGATCTTGTCT
1 AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTCT
*
11665389 TCATGTACTGGCGTGAAGTAGATCAAATATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCA
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCA
11665454 GATCGAAAGCAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
131 GATCG-AA-CAGA-C-AAG---ACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
* * * * * * * *
11665513 AAAGA-AACAGATCTTGTC-TCCCTATACTAGTGGTGGAGTAGATCGAAGAAAATAGATCTTATC
1 AAAGATACCAGATCTTGCCTTCCC-ATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTC
* *
11665576 TTCATGTATTGACGTGAAGTAGATCAAAGATA
65 TTCATGTACTGGCGTGAAGTAGATCAAAGATA
11665608 GCATGTCATG
Statistics
Matches: 252, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
178 129 0.51
180 1 0.00
182 3 0.01
185 3 0.01
187 4 0.02
188 72 0.29
189 40 0.16
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (182 bp):
AAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTCT
TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCA
GATCGAACAGACAAGACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
Done.