Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 49 of 172
Found at i:13202728 original size:54 final size:54
Alignment explanation
Indices: 13202602--13202764 Score: 283
Period size: 54 Copynumber: 3.0 Consensus size: 54
13202592 GCTAGTGTAG
*
13202602 TTGGTGAACCGGTGTTCTCCAGGTAAGGTGTCGATTGGGGGTTC-CCAGTCTAT
1 TTGGTGAACCGGTGTTCTCCAGGTAAGGTGTCGACTGGGGGTTCACCAGTCTAT
* *
13202655 TTGGCGAACCGGTGTTCTCCAGGTAAAGTGTCGACTGGGGGTTCACCAGTCTAT
1 TTGGTGAACCGGTGTTCTCCAGGTAAGGTGTCGACTGGGGGTTCACCAGTCTAT
*
13202709 TTGGTGAACCGATGTTCTCCAGGTAAGGTGTCGACTGGGGGTTCACCAGTCTAT
1 TTGGTGAACCGGTGTTCTCCAGGTAAGGTGTCGACTGGGGGTTCACCAGTCTAT
13202763 TT
1 TT
13202765 AGCGAACCAG
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 41 0.40
54 62 0.60
ACGTcount: A:0.17, C:0.20, G:0.32, T:0.31
Consensus pattern (54 bp):
TTGGTGAACCGGTGTTCTCCAGGTAAGGTGTCGACTGGGGGTTCACCAGTCTAT
Found at i:13203387 original size:13 final size:13
Alignment explanation
Indices: 13203356--13203401 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
13203346 CTTTGATATT
13203356 TGTTTTCAAGGTTA
1 TGTTTTCAA-GTTA
*
13203370 AGTTTTCAAGTTA
1 TGTTTTCAAGTTA
* *
13203383 TGTTTTAAAGATA
1 TGTTTTCAAGTTA
13203396 TGTTTT
1 TGTTTT
13203402 ATGCGAGCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 20 0.71
14 8 0.29
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.52
Consensus pattern (13 bp):
TGTTTTCAAGTTA
Found at i:13209162 original size:50 final size:50
Alignment explanation
Indices: 13209050--13209276 Score: 247
Period size: 50 Copynumber: 4.4 Consensus size: 50
13209040 ATTCGGGTAA
* * *
13209050 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---AG---ATG
* * *
13209106 AGAGGTCTCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* * *
13209156 AGAGGTCCCATGTAAGATCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * *
13209206 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** *
13209256 AGAACTCTCATGTAAGACCAT
1 AGAGGTCCCATGTAAGACCAT
13209277 ATCTAAGATA
Statistics
Matches: 151, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
50 108 0.72
53 2 0.01
56 41 0.27
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:13209760 original size:44 final size:43
Alignment explanation
Indices: 13209710--13209980 Score: 319
Period size: 43 Copynumber: 6.3 Consensus size: 43
13209700 TTTTATAACT
* * *
13209710 AAACGCCGCTAAAGACCATGACCTTTAACGGCTCTCTTTCCCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCT-TTTCCCAC
* **
13209754 AAACGCCGCTAAAGACCAAGACCTTTAGTAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
13209797 AAACGCCGTTAAAGACCAAGACCTTGAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
*
13209840 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * * **
13209883 AAACACCGCTAAAGAACATGAACTTTAGCGGTGCTTACCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
** * * **
13209926 AAACGTTGCTAAAGAAC-TGATCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
13209968 AAACGCCGCTAAA
1 AAACGCCGCTAAA
13209981 AATACGATTC
Statistics
Matches: 193, Mismatches: 34, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 30 0.16
43 133 0.69
44 30 0.16
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:13212101 original size:24 final size:24
Alignment explanation
Indices: 13212069--13212128 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
13212059 CGTTGAAGGC
13212069 AGAAATAGATAACTTAAACAAATT
1 AGAAATAGATAACTTAAACAAATT
* *
13212093 AGAAATAGATAAATTAAACAACTT
1 AGAAATAGATAACTTAAACAAATT
*
13212117 AG-ACTAGATAAC
1 AGAAATAGATAAC
13212129 AGTAGTCTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 8 0.25
24 24 0.75
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (24 bp):
AGAAATAGATAACTTAAACAAATT
Found at i:13214060 original size:15 final size:15
Alignment explanation
Indices: 13214040--13214069 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13214030 CCTTAACTCG
*
13214040 ACCCTAAATCTCTAA
1 ACCCTAAATCACTAA
13214055 ACCCTAAATCACTAA
1 ACCCTAAATCACTAA
13214070 CTCTTAACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (15 bp):
ACCCTAAATCACTAA
Found at i:13214073 original size:21 final size:20
Alignment explanation
Indices: 13214049--13214100 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
13214039 GACCCTAAAT
13214049 CTCTAAACCCTAAATCACTAA
1 CTCTAAACCCT-AATCACTAA
* *
13214070 CTCTTAACCTCTAATCCCTAA
1 CTCTAAACC-CTAATCACTAA
*
13214091 CCCTAAACCC
1 CTCTAAACCC
13214101 CGAACTACTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 23 0.88
22 2 0.08
ACGTcount: A:0.35, C:0.40, G:0.00, T:0.25
Consensus pattern (20 bp):
CTCTAAACCCTAATCACTAA
Found at i:13214736 original size:20 final size:19
Alignment explanation
Indices: 13214707--13214748 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
13214697 AATTTTAACT
*
13214707 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATAA
*
13214726 AATAGTAAATAGACAAATAA
1 AATA-TAAATAAACAAATAA
13214746 AAT
1 AAT
13214749 GTTTTTGCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:13214814 original size:41 final size:41
Alignment explanation
Indices: 13214755--13214941 Score: 151
Period size: 41 Copynumber: 4.6 Consensus size: 41
13214745 AAATGTTTTT
* ** * * *
13214755 GCGGCGCTTTTTCAAAAACGCGGCTAAATCCCCTAGCATTA
1 GCGGCGCTTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
13214796 GCGGCGCTTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
1 GCGGCGCTTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
* ** * * **
13214837 GCGGCGCTTCTTGGAAAATGCCATTGAATCCCTGAGCATTA
1 GCGGCGCTTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
* ** * * **
13214878 GCGGTGCATT-TTTAAAAACGCAGCTAAAGCTCTGAGCATTA
1 GCGGCGC-TTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
* **
13214919 GCGGCGCTTTTTCAAAAACGCCG
1 GCGGCGCTTCTTGGAAAACGCCG
13214942 TCAGAGCCCT
Statistics
Matches: 118, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
40 2 0.02
41 114 0.97
42 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
Found at i:13215090 original size:40 final size:40
Alignment explanation
Indices: 13215011--13215138 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
13215001 TTCCAAAAAA
* * ** ** *
13215011 CACCGCTAATGCTC-ATTTTTAGTGGCACTTTCCTGAAAG
1 CACCGCTAATGCTCGATCTTTAGCGGCGTTTTTGTCAAAG
* * *
13215050 CGCCGCTAATGCTTGATCTTTAGCGGTGTTTTATGT-AAAG
1 CACCGCTAATGCTCGATCTTTAGCGGCGTTTT-TGTCAAAG
* * *
13215090 CACCGCTAATGCTCGATTTTTAGTGGCGTTTTTGTCAAAA
1 CACCGCTAATGCTCGATCTTTAGCGGCGTTTTTGTCAAAG
13215130 CACCGCTAA
1 CACCGCTAA
13215139 AAGCCTGTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
39 15 0.21
40 55 0.77
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (40 bp):
CACCGCTAATGCTCGATCTTTAGCGGCGTTTTTGTCAAAG
Found at i:13216026 original size:20 final size:20
Alignment explanation
Indices: 13216001--13216042 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
13215991 TTAGAGCAGG
13216001 TTTAGTCGGTTCTTGGAATA
1 TTTAGTCGGTTCTTGGAATA
13216021 TTTAGTCGGTTCTTGGAATA
1 TTTAGTCGGTTCTTGGAATA
13216041 TT
1 TT
13216043 CAGTATGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.10, G:0.24, T:0.48
Consensus pattern (20 bp):
TTTAGTCGGTTCTTGGAATA
Found at i:13220431 original size:50 final size:49
Alignment explanation
Indices: 13220307--13220594 Score: 245
Period size: 50 Copynumber: 5.7 Consensus size: 49
13220297 TAAAGAGATC
* * * *
13220307 CCATGTAAGACC-TGTCTGGGACATGACATTGGCATCATTGAGATTATGAGAGATC
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATGAGAG-TT
* * * *
13220362 CCATGTAAGACCATATCTGGGAGATGGCGTTGGCATCGAGATGAAATGTT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGA-GTT
* *
13220412 CCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATGAGAGGT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGTT
* * *
13220461 CCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGTGAGGTC
1 CC-ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGA-GTT
** * * * * **
13220512 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGTT
* * * *
13220561 CTCATGTAAGACCATATCTGAGATATGGCATTGG
1 C-CATGTAAGACCATGTCTGGGACATGGCGTTGG
13220595 TAGTACAAGA
Statistics
Matches: 193, Mismatches: 35, Indels: 15
0.79 0.14 0.06
Matches are distributed among these distances:
49 5 0.03
50 151 0.78
51 4 0.02
53 3 0.02
55 12 0.06
56 18 0.09
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGTT
Found at i:13220489 original size:100 final size:100
Alignment explanation
Indices: 13220352--13220594 Score: 274
Period size: 100 Copynumber: 2.4 Consensus size: 100
13220342 CATTGAGATT
* * * * * * *
13220352 ATGAGAGATCCCATGTAAGACCATATCTGGGAGATGGCGTTGGCATCGAGATGAAATGTTCCATG
1 ATGAGAGATCCTATGTAAGACCATATCTGGGACATGGCGTTGGCACCAAGATGAAAGGTCCCACG
* *
13220417 TAAGACCATGTCTGGGACATAGCGTTGGCACCGAG
66 TAAGACCATGTCTGGGACATAGCATGGGCACCGAG
* * ** *
13220452 ATGAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGTGAGGTCCCCCG
1 ATGAGAGATCCTATGTAAGACCATATCTGGGACATGGCGTTGGCACCAAGATGAAAGGTCCCACG
* * *
13220517 TAAGACCATGTCTGGGACATGGCATGGGCACCTAT
66 TAAGACCATGTCTGGGACATAGCATGGGCACCGAG
* * *
13220552 ATGAGA-A-CTCTCATGTAAGACCATATCTGAGATATGGCATTGG
1 ATGAGAGATC-CT-ATGTAAGACCATATCTGGGACATGGCGTTGG
13220595 TAGTACAAGA
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
98 1 0.01
99 2 0.02
100 116 0.97
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (100 bp):
ATGAGAGATCCTATGTAAGACCATATCTGGGACATGGCGTTGGCACCAAGATGAAAGGTCCCACG
TAAGACCATGTCTGGGACATAGCATGGGCACCGAG
Found at i:13225788 original size:26 final size:26
Alignment explanation
Indices: 13225733--13225788 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
13225723 AATCTGAGAC
* * *
13225733 TTTATGTTTTCTTTGATCTAGATACT
1 TTTATCTTTTCCTTGATCTAGATACG
*
13225759 TTTATCTTTTCCTTGATCTAGATTCG
1 TTTATCTTTTCCTTGATCTAGATACG
13225785 TTTA
1 TTTA
13225789 AGGCTTAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.18, C:0.14, G:0.11, T:0.57
Consensus pattern (26 bp):
TTTATCTTTTCCTTGATCTAGATACG
Found at i:13232375 original size:27 final size:27
Alignment explanation
Indices: 13232317--13232379 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
13232307 GTAGAATTCA
* *
13232317 CCACAGAGGCTATCATTTCATATTTTG
1 CCACAAAGGCTATCATTTCATATTTCG
* *
13232344 TCACAAAGGCTACTC-TTTCTTATTTCG
1 CCACAAAGGCTA-TCATTTCATATTTCG
13232371 CCACAAAGG
1 CCACAAAGG
13232380 TGTTGCTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (27 bp):
CCACAAAGGCTATCATTTCATATTTCG
Found at i:13238035 original size:19 final size:19
Alignment explanation
Indices: 13238000--13238036 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13237990 TTATGATCAT
*
13238000 AAATTAATTATGATTAATG
1 AAATTAATTAAGATTAATG
*
13238019 AAATTAATTAAGTTTAAT
1 AAATTAATTAAGATTAAT
13238037 TAACTCCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (19 bp):
AAATTAATTAAGATTAATG
Found at i:13241174 original size:21 final size:22
Alignment explanation
Indices: 13241148--13241194 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
13241138 AACTTTTGCT
*
13241148 AAATAT-AAGTACCACATTAGA
1 AAATATAAAGTACCACATTAAA
13241169 AAATATACAAGTACCACATTAAA
1 AAATATA-AAGTACCACATTAAA
13241192 AAA
1 AAA
13241195 ATATTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.26
23 17 0.74
ACGTcount: A:0.57, C:0.15, G:0.06, T:0.21
Consensus pattern (22 bp):
AAATATAAAGTACCACATTAAA
Found at i:13247625 original size:21 final size:21
Alignment explanation
Indices: 13247600--13247643 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
13247590 ATTTTTGAGG
13247600 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
13247621 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
13247642 AT
1 AT
13247644 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:13247649 original size:19 final size:19
Alignment explanation
Indices: 13247599--13247654 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
13247589 AATTTTTGAG
13247599 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13247618 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
13247639 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
13247655 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13247661 original size:22 final size:23
Alignment explanation
Indices: 13247612--13247677 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
13247602 ATGCAATCTT
*
13247612 AGATATGATATATGCAATCTT---
1 AGATATGAT-TATGTAATCTTAGA
13247633 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
13247655 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
13247678 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:13247687 original size:22 final size:23
Alignment explanation
Indices: 13247643--13247687 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13247633 AGATATGATA
*
13247643 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
13247666 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
13247688 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:13249087 original size:98 final size:98
Alignment explanation
Indices: 13248973--13249167 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
13248963 TTAAAAATAA
* * *
13248973 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
13249038 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
13249071 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
13249136 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
13249168 ATTTTATTGT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:13253188 original size:15 final size:15
Alignment explanation
Indices: 13253165--13253210 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
13253155 TTCAGATTCA
13253165 AAAAAAAAACAAAAC
1 AAAAAAAAACAAAAC
*
13253180 AAAACAAAACAAAAAAC
1 AAAA-AAAA-ACAAAAC
*
13253197 AAAAAAAAGCAAAA
1 AAAAAAAAACAAAA
13253211 ATGAAGAGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 8 0.31
16 8 0.31
17 10 0.38
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (15 bp):
AAAAAAAAACAAAAC
Found at i:13253196 original size:22 final size:21
Alignment explanation
Indices: 13253163--13253211 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
13253153 AGTTCAGATT
13253163 CAAAAAAAAAACAAAACAAAA-
1 CAAAAAAAAAACAAAA-AAAAG
13253184 CAAAACAAAAAACAAAAAAAAG
1 CAAAA-AAAAAACAAAAAAAAG
13253206 CAAAAA
1 CAAAAA
13253212 TGAAGAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (21 bp):
CAAAAAAAAAACAAAAAAAAG
Found at i:13253203 original size:10 final size:10
Alignment explanation
Indices: 13253165--13253211 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
13253155 TTCAGATTCA
13253165 AAAAAAAAAC
1 AAAAAAAAAC
*
13253175 AAAACAAAAC
1 AAAAAAAAAC
13253185 AAAACAAAAAAC
1 -AAA-AAAAAAC
*
13253197 AAAAAAAAGC
1 AAAAAAAAAC
13253207 AAAAA
1 AAAAA
13253212 TGAAGAGGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 20 0.62
11 6 0.19
12 6 0.19
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:13254732 original size:132 final size:132
Alignment explanation
Indices: 13254553--13263628 Score: 15054
Period size: 132 Copynumber: 68.9 Consensus size: 132
13254543 CTGCATTGAC
* * *
13254553 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13254618 GTAATTCTACTTCCTTGGGCAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13254683 GT
131 GT
* *
13254685 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13254750 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13254815 GT
131 GT
* * *
13254817 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTAGTTATAGTAGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13254882 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13254947 GT
131 GT
13254949 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13255014 ATAATTCTACTTCACTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13255079 GT
131 GT
* * *
13255081 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCTCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13255146 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13255211 GT
131 GT
* * *
13255213 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCTCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13255278 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCACCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13255343 GT
131 GT
* * *
13255345 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
** *
13255410 GTAATTCTACTTCCCTGGGTAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13255475 GT
131 GT
* * * *
13255477 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCATGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13255542 GTAATTCTACTTCCCTAGG-CAACAGTGGAATAGATTGAAGATTTCAGATCTAATCTCCCTAAGC
66 GTAATTCTACTTCCCT-GGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
13255606 AGT
130 AGT
*
13255609 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13255674 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13255739 GT
131 GT
* * *
13255741 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCTCT-TGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13255805 GTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13255870 GT
131 GT
* * *
13255872 AGTGGAGCAGATCGAAGATGGTGGATTTTTCCTCCCTGTGGTTATAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13255937 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256002 GT
131 GT
* *
13256004 GGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13256069 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATAGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256134 GT
131 GT
** * *
13256136 AGTGGAGCATTTCGAATATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *** *
13256201 GTAATTCTATTTCCCTGGGTTACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256266 GT
131 GT
* * * * *
13256268 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGACTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13256333 GTAATTCTACTTCCCTAGACAACAATGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256398 GT
131 GT
13256400 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13256465 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256530 GT
131 GT
* *
13256532 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13256597 GTAATTCTACTTCCATGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256662 GT
131 GT
* * * * *
13256664 AGTGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGTGTAAATTGAAGTCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13256729 GTAATTCTACTTCCCTGGGCAATAGTGGAATAGATTTGAA-ATTTCAGATCTTATCTCCCTAAGC
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGA-TTGAAGATTTCAGATCTTATCTCCCTAAGC
13256793 AGT
130 AGT
* *
13256796 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
13256861 ATAATTATACTTCACTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAACA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13256926 GT
131 GT
* * *
13256928 AGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCTTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
13256993 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAAAATTTCAGATC-TGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13257057 GT
131 GT
*
13257059 AGT-GAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13257123 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13257188 GT
131 GT
* * *
13257190 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
13257255 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13257320 GT
131 GT
13257322 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13257387 GTAATTCTACTTCCCTGGGCAACAGT-GAGATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
66 GTAATTCTACTTCCCTGGACAACAGTGGA-ATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
13257451 AGT
130 AGT
*
13257454 AGTGGAGCAGATCGAAGAT-G-TGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAG-CA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13257516 AT-ATTCTACTT-CCTAGACAACAGTGGAATAGATTGAAGA-TTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13257578 GT
131 GT
* *
13257580 AGTGGAGCAGATCGAAGATGG-TGATTTTACCT--TTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
13257642 GTAATTCTACTT-CC-GGACAACAGTGGAATAGATTGAAGA-TTCAGATC-TATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13257703 GT
131 GT
*
13257705 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTTCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13257770 GTAATTCTACTTCCAC-GGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
66 GTAATTCTACTTCC-CTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
13257834 AGT
130 AGT
*
13257837 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
13257902 ATAATTCTACTTCACTAGACAACAGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13257967 GT
131 GT
* * *
13257969 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCTCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13258034 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258099 GT
131 GT
* *
13258101 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13258166 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258231 GT
131 GT
* * ** * *
13258233 AGTGGAGCAGATCGGAGAAGATGGGTTTTACCTCCCTGTGGTTATAGTGGACTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
13258298 GTAATTCTACTTCCTTGGGCAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258363 GT
131 GT
13258365 AGTGGAGCAGATCGAAGAT-G-GGATTTT-CCTCCCTGT-GTTATAGTGGAGTACATT-AAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13258425 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258490 GT
131 GT
13258492 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13258557 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258622 GT
131 GT
* * * * *
13258624 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGACTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13258689 GTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258754 GT
131 GT
13258756 AGTGGAGCAGATCGAAGATGGCGGATTTTACCT-CCTGTGGTTATAGT-GAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13258819 GTAATTCCACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13258884 GT
131 GT
* *
13258886 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCTTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
13258951 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259016 GT
131 GT
*
13259018 AGTGGAGCAGATCGAAGAT-G-GGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13259081 ATAATTCTACTTCACTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259146 GT
131 GT
* *
13259148 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13259213 GTAATTCTACTTCGCTGGACAACAGTGGAATAGATTGAA-ATTTCAGATCTTATC-CCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259276 GT
131 GT
* * *
13259278 AGTGGAGCAGATCGAAGATGGCAGATTTTACATCCCTGTGGTTATAGTGGAGTACATTGAAGTCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13259343 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259408 GT
131 GT
* *
13259410 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13259475 ATAATTCTACTTCACTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259540 GT
131 GT
* *
13259542 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13259607 GTAATTCTACTTCGCTGGACAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259672 GT
131 GT
* *
13259674 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGTCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
**
13259739 GTAATTCTACTTCCCTGGGTAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259804 GT
131 GT
* * * *
13259806 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCCTTGTGGTTATAGTGGAGTCCATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13259871 GTAAATCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13259936 GT
131 GT
* * * *
13259938 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCCATGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13260003 GTAATTCTACTTCCCTAGG-CAACAGTGGAATAGATTGAAGATTTCAGATCTAATCTCCCTAAGC
66 GTAATTCTACTTCCCT-GGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
13260067 AGT
130 AGT
* *
13260070 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTTGTTATAGTGGAGTACATTGAAAGCC
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTG-AAGCC
13260135 AGTAATTCTACTTCCCTGGCAACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
65 AGTAATTCTACTTCCCTGG--ACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
13260200 GCAGT
128 GCAGT
* * *
13260205 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCTCTG-GGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13260269 GTAATTATACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13260334 GT
131 GT
* * * *
13260336 AGTGGAGCAGATCGAAGATGGTGAATTTTTCCTCCCTGTGGTTATAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13260401 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13260466 GT
131 GT
*
13260468 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13260533 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATAGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13260598 GT
131 GT
** * *
13260600 AGTGGAGCATTTCGAATATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
**
13260665 GTAATTCTACTTCCCTGGGTAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13260730 GT
131 GT
* * * * *
13260732 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGACTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13260797 GTAATTCTACTTCCCTAGACAACAATGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13260862 GT
131 GT
13260864 AGTGGAGCAGATCGAAGATGGCGGATTTTACCT-CCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13260928 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13260993 GT
131 GT
* *
13260995 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13261060 GTAATTCTACTTCCATGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13261125 GT
131 GT
* * * *
13261127 AGTGAAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGTGTAAATTGAAGTCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13261192 GTAATTCTACTTCCCTGGGCAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13261257 GT
131 GT
* *
13261259 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13261324 ATAATTCTACTTCACTGGACAACAGAGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13261389 GT
131 GT
* * *
13261391 AGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCTTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
13261456 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13261521 GT
131 GT
*
13261523 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
13261588 GTAATTCTATCTTCCCTGG-CAAAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
66 GTAATTCTA-CTTCCCTGGAC-AA-CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
13261652 GCAGT
128 GCAGT
* * *
13261657 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13261722 GTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13261787 GT
131 GT
13261789 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13261854 GTAATTCTACTTCCCTGGGCAACAGT-GAGATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
66 GTAATTCTACTTCCCTGGACAACAGTGGA-ATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
13261918 AGT
130 AGT
* *
13261921 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGTCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13261986 ATAATTCTACTTCACTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262051 GT
131 GT
* ** *
13262053 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTTTCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13262118 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262183 GT
131 GT
* *
13262185 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
13262250 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262315 GT
131 GT
*
13262317 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13262382 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262447 GT
131 GT
* * *
13262449 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13262514 GTAATTCTTCTTCCCTGGACAACAGTGGAA-AGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262578 GT
131 GT
13262580 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13262645 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGA-TTCAAGATCTTATCTCCCTAAGC
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTC-AGATCTTATCTCCCTAAGC
13262709 AGT
130 AGT
* *
13262712 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGTCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13262777 ATAATTCTACTTCACTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262842 GT
131 GT
* * *** *
13262844 AGTGGGGCAGATCGAAGATGGTGGATTTTACCTTTTTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13262909 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13262974 GT
131 GT
* * *
13262976 AGTGGAGAAGATCGAATATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13263041 GTAATTCTACTTCCCTCGG-CAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGC
66 GTAATTCTACTTCCCT-GGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
13263105 AGT
130 AGT
* * *
13263108 AGTGGAGCAGATCGGAGATGAC-GAGTTTTACCTCCCTGTGGTTATAGTGGACTACATTGAAGCC
1 AGTGGAGCAGATCGAAGATGGCGGA-TTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
* *
13263172 AGTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCTCTAAAG
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT-AAG
13263237 CAGT
129 CAGT
13263241 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGT-GTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13263305 GTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13263370 GT
131 GT
13263372 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
13263437 GTAATTCTACTTCTCTGGGCAACAGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13263502 GT
131 GT
* ** * * **
13263504 AGTGGAGTAGATCGAAGATGGTAGATTTTACCTGCCTGTGGTTACAGTGGAGTACATTGAAGTTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * * *
13263569 GTAATCCTA-TCTCCCT-AATCAGCAGTGGAATAGGTTGAAGATTGTAAG-TCTTATCTCCCT
66 GTAATTCTACT-TCCCTGGA-CAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
13263629 GCAGTTGCAG
Statistics
Matches: 8390, Mismatches: 498, Indels: 112
0.93 0.06 0.01
Matches are distributed among these distances:
125 63 0.01
126 89 0.01
127 133 0.02
128 70 0.01
129 20 0.00
130 524 0.06
131 640 0.08
132 6509 0.78
133 125 0.01
134 134 0.02
135 83 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:13257598 original size:43 final size:44
Alignment explanation
Indices: 13257418--13257598 Score: 103
Period size: 43 Copynumber: 4.2 Consensus size: 44
13257408 ACAGTGAGAT
13257418 AGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGTAGTGGAGC
1 AGATTGAAGA-TTCAGATCTTATCTCCCTAAGACAGTAGTGGAGC
* * * ** ** *
13257462 AGATCGAAGATGT--GATTTTACCTCCCTGTGGTTA-TAGTGGAGT
1 AGATTGAAGAT-TCAGATCTTATCTCCCT-AAGACAGTAGTGGAGC
* * * * ** **
13257505 ACATTGAAG---CA-ATATTCTACTTCCT-AGACAACAGTGGAAT
1 AGATTGAAGATTCAGATCTTAT-CTCCCTAAGACAGTAGTGGAGC
13257545 AGATTGAAGATTCAGATCTTATCTCCCTAAG-CAGTAGTGGAGC
1 AGATTGAAGATTCAGATCTTATCTCCCTAAGACAGTAGTGGAGC
*
13257588 AGATCGAAGAT
1 AGATTGAAGAT
13257599 GGTGATTTTA
Statistics
Matches: 98, Mismatches: 27, Indels: 25
0.65 0.18 0.17
Matches are distributed among these distances:
39 2 0.02
40 19 0.19
41 5 0.05
42 12 0.12
43 42 0.43
44 18 0.18
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATTGAAGATTCAGATCTTATCTCCCTAAGACAGTAGTGGAGC
Found at i:13259709 original size:44 final size:44
Alignment explanation
Indices: 13254553--13263536 Score: 848
Period size: 44 Copynumber: 204.8 Consensus size: 44
13254543 CTGCATTGAC
* * *
13254553 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTATGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-AG-CAGT
* *** * * * * ** *
13254598 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCTTGGGCAAT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13254641 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13254685 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * **
13254730 AGTGGAGTACATT-AA-A-GCCAGTAATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* * ** * *
13254773 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * *
13254817 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTAGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * *** * * * ** **
13254862 AGTAGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13254905 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13254949 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* ***** * * * **
13254994 AGTGGAGTACATTGAAGCCAATA-ATTCTACTTCACT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13255037 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * * *
13255081 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCTCTATGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-AG-CAGT
* *** * * * * **
13255126 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** ** *
13255169 AGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13255213 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCTCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13255258 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * * *
13255301 AGTGGAATAGATTGAAGATTTCAGATCTTATCACCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13255345 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** * **
13255390 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGTAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * * *
13255433 AGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * * ** *
13255477 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCATGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * **
13255522 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTAGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * * *
13255565 AGTGGAATAGATTGAAGATTTCAGATCTAATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13255609 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13255654 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13255697 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13255741 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCTCTTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * * * **
13255785 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * *
13255828 AGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * ** *
13255872 AGTGGAGCAGATCGAAGATGGTGGATTTTTCCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * **
13255917 AGTGGAGTACATT-AA-A-GCCAGTAATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* * ** * *
13255960 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13256004 GGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13256049 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * *
13256092 AGTGGAATAGATAGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13256136 AGTGGAGCA-TTTCGAATATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATT-GAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * ** ** * *
13256181 AGTGGAGTACATTGAAGCCAGTA-ATTCTATTTCCCTGGGTTA-C
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * * *
13256224 AGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13256268 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * **
13256313 AGTGGACTACATT-AA-A-GCCAGTAATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* * *** * *
13256356 AATGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13256400 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13256445 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13256488 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13256532 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * * **
13256577 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCAT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13256620 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * ** *
13256664 AGTGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * ** *
13256709 AGTGGTGTAAATTGAAG-T--CAGTAATTCTACTTCCCTGGGCAAT
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAGCAGT
* ** * *
13256752 AGTGGAATAGATTTGAA-ATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGA-TTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13256796 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * *** * * * * **
13256841 AGTGGAGTACATTGAAGCTAATA-ATTATACTTCACT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * * *
13256884 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAACAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * ** *
13256928 AGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCTTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * *
13256973 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGAA--AAT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT--AAGCAGT
* * ** *
13257016 AGTGGAATAGATTGAAAATTTCAGATCTGT--CTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGAT-TTTACCTCCCTAAGCAGT
* * ** *
13257059 AGT-GAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13257103 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13257146 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13257190 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * **
13257235 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13257278 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13257322 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13257367 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
** * *
13257410 AGT-GAGATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAG-TAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13257454 AGTGGAGCAGATCGAAGAT-G-TGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * **
13257497 AGTGGAGTACATTG-A-A--GCA-ATATTCTA-CTTCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGAT-TT-TACCTCCCTAAG-CAGT
* * * *
13257537 AGTGGAATAGATTGAAGAT-TCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * *** * *
13257580 AGTGGAGCAGATCGAAGATGG-TGATTTTACCTTTGT-GGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * * * ** **
13257622 AGTGGAGTACATTGAAGCCAGTA-ATTCTA-CTTCCGGA-CAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * *
13257663 AGTGGAATAGATTGAAGAT-TCAGA-TCTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13257705 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTTCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13257750 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCAC-GGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCC-CTAAGCAGT
* ** * *
13257793 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13257837 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* ***** * * * **
13257882 AGTGGAGTACATTGAAGCCAATA-ATTCTACTTCACT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* * ** * *
13257925 AGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * * *
13257969 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCTCTATGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-AG-CAGT
* *** * * * * **
13258014 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** ** *
13258057 AGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13258101 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13258146 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13258189 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13258233 AGTGGAGCAGATCGGAGAAGATGG--G-TTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGAT---TGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * *** * * * * ** *
13258278 AGTGGACTACATTGAAGCCAGTA-ATTCTACTTCCTTGGGCAAT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * * *
13258321 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13258365 AGTGGAGCAGATCGAAGATGG--GATTTT-CCTCCCTGTGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * * * * **
13258406 AGTGGAGTACATT-AAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* * ** * *
13258448 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13258492 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13258537 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13258580 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13258624 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * **
13258669 AGTGGACTACATT-AA-A-GCCAGTAATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* *** * *
13258712 AGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13258756 AGTGGAGCAGATCGAAGATGGCGGATTTTACCT-CCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * ** * ** **
13258800 AGT-GAGTACATTGAAGCCAGTA-ATTCCACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13258842 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * ** *
13258886 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCTTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * **
13258931 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13258974 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13259018 AGTGGAGCAGATCGAAGATGG--GATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * *** * * * * **
13259061 AGTGGAGTACATTGAAGCTAATA-ATTCTACTTCACT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13259104 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13259148 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * * **
13259193 AGTGGAGTACATT-AA-A-GCCAGTAATTCTACTTCGCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* ** * *
13259236 AGTGGAATAGATTGAA-ATTTCAGATCTTATC-CCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13259278 AGTGGAGCAGATCGAAGATGGCAGATTTTACATCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * ** **
13259323 AGTGGAGTACATTGAAG-T--CAGTAATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAGCAGT
* ** * *
13259366 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13259410 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * *** * * * * **
13259455 AGTGGAGTACATTGAAGCTAATA-ATTCTACTTCACT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * *
13259498 AGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13259542 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * * **
13259587 AGTGGAGTACATT-AA-A-GCCAGTAATTCTACTTCGCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* * ** * *
13259630 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13259674 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * ** * **
13259719 AGTGGAGTACATTGAAG-T--CAGTAATTCTACTTCCCTGGGTAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAGCAGT
* ** * *
13259762 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13259806 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCCTTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
** *** * * * * ** **
13259851 AGTGGAGTCCATTGAAGCCAGTA-AATCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13259894 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * **
13259938 AGTGGAGCAGATCGAATATGGCAGATTTTACCT-CC-ATGTGGTT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAG-T
* *** * * * * **
13259981 ACAGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTAGGCAAC
1 --AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * * *
13260026 AGTGGAATAGATTGAAGATTTCAGATCTAATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13260070 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTTGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * **
13260115 AGTGGAGTACATTGAA-A-GCCAGTAATTCTACTTCCCTGGCAA-CAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCT---AAGCAGT
* ** * *
13260161 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13260205 AGTGGAGCAGATCGAATATGGCAGATTTTACCTCTCTGGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * * * **
13260249 AGTGGAGTACATTGAAGCCAGTA-ATTATACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * *
13260292 AGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13260336 AGTGGAGCAGATCGAAGATGG-TGAATTTTTCCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAG-ATTTTACCTCCCT-AAG-CAGT
* * * * * **
13260381 AGTGGAGTACATT-AA-A-GCCAGTAATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* * ** * *
13260424 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13260468 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13260513 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * *
13260556 AGTGGAATAGATAGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13260600 AGTGGAGCA-TTTCGAATATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATT-GAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** * **
13260645 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGTAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13260688 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13260732 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * * **
13260777 AGTGGACTACATT-AA-A-GCCAGTAATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAG-CAGT
* * ** * *
13260820 AATGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13260864 AGTGGAGCAGATCGAAGATGGCGGATTTTACCT-CCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13260908 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13260951 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13260995 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * * **
13261040 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCAT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13261083 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13261127 AGTGAAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * * ** *
13261172 AGTGGTGTAAATTGAAG-T--CAGTAATTCTACTTCCCTGGGCAAT
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAGCAGT
* ** * *
13261215 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13261259 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * *** * * * * **
13261304 AGTGGAGTACATTGAAGCTAATA-ATTCTACTTCACT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* * ** * *
13261347 AGAGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * ** *
13261391 AGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCTTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * *
13261436 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGAA--AAT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT--AAGCAGT
* * ** * **
13261479 AGTGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13261523 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * *
13261568 AGTGGAGTACATTGAAGCCAGTA-ATTCTATCTTCCCT-GGCAAAGC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTA-CCTCCCTAAGC--AGT
* ** * *
13261613 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13261657 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * **
13261702 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13261745 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13261789 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13261834 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
** * *
13261877 AGT-GAGATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAG-TAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** *
13261921 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * **
13261966 AGTGGAGTACATTGAAG-T--CA-ATAATTCTACTTCACT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGAT--TT-TACCTCCCTAAG-CAGT
* ** * *
13262009 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** ** * *
13262053 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTTTCTATGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-AG-CAGT
* *** * * * * **
13262098 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** ** *
13262141 AGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13262185 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * *
13262230 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGAA--AAT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT--AAGCAGT
* * ** * **
13262273 AGTGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** *
13262317 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13262362 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* ** * *
13262405 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * * * ** *
13262449 AGTGGAGCAGATCGGAGATGACGGGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * **
13262494 AGTGGAGTACATTGAAGCCAGTA-ATTCTT-CTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATT-TTACCTCCCTAAG-CAGT
* ** * *
13262537 AGTGGA-AAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13262580 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13262625 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * *
13262668 AGTGGAATAGATTGAAGAT-TCAAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGC-AGATTTTACCTCCCTAAGCAGT
* * ** ** *
13262712 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* * * **
13262757 AGTGGAGTACATTGAAG-T--CA-ATAATTCTACTTCACT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGAT--TT-TACCTCCCTAAG-CAGT
* ** * *
13262800 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *** * *
13262844 AGTGGGGCAGATCGAAGATGGTGGATTTTACCTTTTTATGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-AG-CAGT
* *** * * * * **
13262889 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** ** *
13262932 AGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13262976 AGTGGAGAAGATCGAATATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * ** **
13263021 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTCGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * *
13263064 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * * ** *
13263108 AGTGGAGCAGATCGGAGATGAC-GAGTTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGA-TTTTACCTCCCT-AAG-CAGT
* * *** * * * **
13263153 AGTGGACTACATTGAAGCCAGTA-ATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * * *
13263196 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCTCTAAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAGCAGT
* * * ** *
13263241 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* *** * * * **
13263285 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAG-CAGT
* ** * *
13263328 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * * ** *
13263372 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAG-CAGT
* *** * * * * ** **
13263417 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCTCTGGGCAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* * ** * *
13263460 AGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
* *
13263504 AGTGGAGTAGATCGAAGATGGTAGATTTTACCT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCT
13263537 GCCTGTGGTT
Statistics
Matches: 5902, Mismatches: 2604, Indels: 867
0.63 0.28 0.09
Matches are distributed among these distances:
39 2 0.00
40 25 0.00
41 66 0.01
42 307 0.05
43 1204 0.20
44 3080 0.52
45 1076 0.18
46 128 0.02
47 11 0.00
48 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGCAGT
Found at i:13263922 original size:21 final size:19
Alignment explanation
Indices: 13263857--13263950 Score: 143
Period size: 19 Copynumber: 4.8 Consensus size: 19
13263847 AATTTTTGAG
13263857 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
13263876 GCTATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
13263895 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13263914 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
13263935 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
13263951 AGATATGATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
19 49 0.72
21 19 0.28
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13263933 original size:40 final size:38
Alignment explanation
Indices: 13263857--13263957 Score: 143
Period size: 40 Copynumber: 2.7 Consensus size: 38
13263847 AATTTTTGAG
*
13263857 GATATGCAATCTTAGATATGCTATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
13263895 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
13263935 GATATGTAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
13263958 ATTTTGTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
36 5 0.09
38 21 0.36
39 1 0.02
40 31 0.53
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:13263969 original size:23 final size:22
Alignment explanation
Indices: 13263889--13263973 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
13263879 ATGCAATCCT
*
13263889 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
13263910 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
13263929 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
13263951 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
13263974 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:13263983 original size:22 final size:23
Alignment explanation
Indices: 13263939--13263983 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13263929 AGATATGATA
*
13263939 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
13263962 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
13263984 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:13264964 original size:98 final size:98
Alignment explanation
Indices: 13264831--13265021 Score: 337
Period size: 98 Copynumber: 1.9 Consensus size: 98
13264821 TTAAAAATAA
* *
13264831 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
13264896 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
13264929 TAAATGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
13264994 TTAAATCTTGGATAAGTGGATGTTCTTT
66 TTAAATCTTGGATAAGTGGATGTTCTTT
13265022 AAAAATTTTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:13265855 original size:17 final size:17
Alignment explanation
Indices: 13265817--13265855 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13265807 TATATTTTTA
* *
13265817 AAAAAAATTAAAATTAT
1 AAAAAAAGTAAAACTAT
13265834 AAAAAAAGTAAAACTATT
1 AAAAAAAGTAAAACTA-T
13265852 AAAA
1 AAAA
13265856 GTTATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAAAAAGTAAAACTAT
Found at i:13267898 original size:59 final size:60
Alignment explanation
Indices: 13267825--13267948 Score: 169
Period size: 59 Copynumber: 2.1 Consensus size: 60
13267815 TTACGGTAGA
* * * * * *
13267825 GGTCATCCAACTATGAAAAGTTACAAAATAATTACTCTACTATTTAATTTTGT-TTTTTT
1 GGTCATCCAACTATGAAAAGTTACAAAACAATCACCCAACTATTCAATTTTATCTTTTTT
* *
13267884 GGTCATTCAACTATGAAAAGTTACAAAACGATCACCCAACTATTCAATTTTATCTTTTTT
1 GGTCATCCAACTATGAAAAGTTACAAAACAATCACCCAACTATTCAATTTTATCTTTTTT
13267944 GGTCA
1 GGTCA
13267949 CCAGCTTGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 45 0.80
60 11 0.20
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.40
Consensus pattern (60 bp):
GGTCATCCAACTATGAAAAGTTACAAAACAATCACCCAACTATTCAATTTTATCTTTTTT
Found at i:13269872 original size:29 final size:29
Alignment explanation
Indices: 13269838--13269915 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
13269828 AGAAGGTCGT
13269838 GTGGTAGGCCGTGTGC-A-ACACATGACCGC
1 GTGGTAGGCCGTGTGCGACACACA-G-CCGC
** *
13269867 GTGGTACACCGTGTGCGACACACAGCCGT
1 GTGGTAGGCCGTGTGCGACACACAGCCGC
* *
13269896 GTGATAGGCCGTGTGTGACA
1 GTGGTAGGCCGTGTGCGACA
13269916 TACGACCTAG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 33 0.82
30 2 0.05
31 5 0.12
ACGTcount: A:0.21, C:0.26, G:0.35, T:0.19
Consensus pattern (29 bp):
GTGGTAGGCCGTGTGCGACACACAGCCGC
Found at i:13270841 original size:18 final size:17
Alignment explanation
Indices: 13270818--13270856 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
13270808 GATAAAACGG
13270818 TTTTTCTGAAAATAACAA
1 TTTTTCTG-AAATAACAA
*
13270836 TTTTTCTGAAATAACAG
1 TTTTTCTGAAATAACAA
13270853 TTTT
1 TTTT
13270857 CAAGAAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (17 bp):
TTTTTCTGAAATAACAA
Found at i:13278184 original size:29 final size:30
Alignment explanation
Indices: 13278113--13278185 Score: 96
Period size: 29 Copynumber: 2.4 Consensus size: 30
13278103 AATCGAAGCT
*
13278113 ATCCCTTTTCATGATTTTGATGGTCGTCACC
1 ATCCCTTTTCAT-ATGTTGATGGTCGTCACC
13278144 AT-CCTTTCTCAT-TGTTGATGGTCGTCACC
1 ATCCCTTT-TCATATGTTGATGGTCGTCACC
*
13278173 GTCCCTTTTCATA
1 ATCCCTTTTCATA
13278186 GCTCGATAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
29 21 0.57
30 10 0.27
31 6 0.16
ACGTcount: A:0.15, C:0.27, G:0.15, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATATGTTGATGGTCGTCACC
Found at i:13284925 original size:17 final size:17
Alignment explanation
Indices: 13284903--13284935 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13284893 CACTAACATT
*
13284903 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
13284920 AAAATGCAACGACAAT
1 AAAATGCAACGACAAT
13284936 GTTCACTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:13287207 original size:11 final size:11
Alignment explanation
Indices: 13287186--13287216 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
13287176 AACAAACTTG
13287186 AATAGAAATAAA
1 AATA-AAATAAA
13287198 AATAAAATAAA
1 AATAAAATAAA
13287209 AATAAAAT
1 AATAAAAT
13287217 TTCATAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:13294365 original size:47 final size:48
Alignment explanation
Indices: 13294245--13294436 Score: 183
Period size: 48 Copynumber: 4.0 Consensus size: 48
13294235 TACTATGCGT
*
13294245 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCC
1 ACCGATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCC
* * **
13294293 ACCGATATTCTGTTGTGACACAAGGGTGGCACGGACTTTGTGTA-GCC
1 ACCGATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCC
* * *
13294340 ACC-A-ATTACTTGTTAAGATACAAGGGTGGCACGGACTATGTACAGGCC
1 ACCGATATT-C-TGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCC
* * * * * ** * * *
13294388 ACTGAGAATCTATTATTAGGCAAAGGTGGTACGGACTGTGTGCAGGCC
1 ACCGATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCC
13294436 A
1 A
13294437 TCGAGAAATC
Statistics
Matches: 117, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
45 3 0.03
46 2 0.02
47 34 0.29
48 74 0.63
49 2 0.02
50 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
ACCGATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCC
Found at i:13294422 original size:95 final size:95
Alignment explanation
Indices: 13294255--13294429 Score: 224
Period size: 95 Copynumber: 1.8 Consensus size: 95
13294245 ACCGATAATC
* * * * * * *
13294255 TGTTATGACACAAGGGTGGCACGGACTGTGTACAGGCCACCGATATTCTGTTGTGACACAAGGGT
1 TGTTAAGACACAAGGGTGGCACGGACTATGTACAGGCCACCGAGAATCTATTATGACACAAAGGT
*
13294320 GGCACGGACTTTGTGTAGCCACCAATTACT
66 GGCACGGACTGTGTGTAGCCACCAATTACT
* * * **
13294350 TGTTAAGATACAAGGGTGGCACGGACTATGTACAGGCCACTGAGAATCTATTATTAGGCAAAGGT
1 TGTTAAGACACAAGGGTGGCACGGACTATGTACAGGCCACCGAGAATCTATTATGACACAAAGGT
*
13294415 GGTACGGACTGTGTG
66 GGCACGGACTGTGTG
13294430 CAGGCCATCG
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
95 66 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (95 bp):
TGTTAAGACACAAGGGTGGCACGGACTATGTACAGGCCACCGAGAATCTATTATGACACAAAGGT
GGCACGGACTGTGTGTAGCCACCAATTACT
Found at i:13301689 original size:48 final size:48
Alignment explanation
Indices: 13301629--13301825 Score: 207
Period size: 48 Copynumber: 4.1 Consensus size: 48
13301619 TACTATGCAT
* * *
13301629 ACCGATAATCTGTTATGGCACAAGGGTGGCACAGACTGTGTGGAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * *
13301677 ACCGATATTCTGTTGTGACACAAGGGTGGCACGGACTGTGTGTAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * * * *
13301725 ACCAATTA-CTTGTTAAGATACAAGGGTGGCACGGACTATGTGCAGGTC
1 ACCGATAATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * * * * *
13301773 ACCGAGAATCTGTTATTAGACAAAGGTGGTACGGATTTTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
13301821 ACCGA
1 ACCGA
13301826 GAAATCTCTT
Statistics
Matches: 122, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 120 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
Found at i:13304452 original size:20 final size:20
Alignment explanation
Indices: 13304427--13304474 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
13304417 GGGTCACACG
13304427 GCCAAGCCACACATTCGTGT
1 GCCAAGCCACACATTCGTGT
13304447 GCCAAGCCACACATTCGTGT
1 GCCAAGCCACACATTCGTGT
13304467 GCCAAGCC
1 GCCAAGCC
13304475 GTGTACCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.38, G:0.21, T:0.17
Consensus pattern (20 bp):
GCCAAGCCACACATTCGTGT
Found at i:13305679 original size:29 final size:30
Alignment explanation
Indices: 13305623--13305682 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
13305613 AGCCAAAGCG
*
13305623 ATCCCTTTTCATAATTTTGATGGTCGTCACC
1 ATCCCTTTTCAT-ATGTTGATGGTCGTCACC
13305654 ATCCCTTTTCAT-TGTTGATGGTCGTCACC
1 ATCCCTTTTCATATGTTGATGGTCGTCACC
13305683 GTCATTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 16 0.57
31 12 0.43
ACGTcount: A:0.17, C:0.27, G:0.15, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATATGTTGATGGTCGTCACC
Found at i:13305691 original size:29 final size:29
Alignment explanation
Indices: 13305639--13305694 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
13305629 TTTCATAATT
*
13305639 TTGATGGTCGTCACCATCCCTTTTCATTG
1 TTGATGGTCGTCACCATCACTTTTCATTG
* *
13305668 TTGATGGTCGTCACCGTCATTTTTCAT
1 TTGATGGTCGTCACCATCACTTTTCAT
13305695 AGTTTGATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (29 bp):
TTGATGGTCGTCACCATCACTTTTCATTG
Found at i:13305812 original size:120 final size:120
Alignment explanation
Indices: 13305628--13305844 Score: 326
Period size: 120 Copynumber: 1.8 Consensus size: 120
13305618 AAGCGATCCC
* * * * *
13305628 TTTTCATAATTTTGATGGTCGTCACCATCCCTTTTCATTGTTGATGGTCGTCACCGTCATTTTTC
1 TTTTCATAATTTTGATGGTAGTCACCATCCCTGTTCATTGTTGATGGTCATCACCATCACTTTTC
* * * *
13305693 ATAGTTTGATAGTAAGAGCTGTCCCTTTTCATGACTTGGTAGCCGAGGCTACCCT
66 ATAGCTCGATAGCAAGAGCTATCCCTTTTCATGACTTGGTAGCCGAGGCTACCCT
* *
13305748 TTTTCATAATTTTGATGGTAGTCACCATCCCTGTTCATTGTTGATTGTCATCACCATCCCTTTTC
1 TTTTCATAATTTTGATGGTAGTCACCATCCCTGTTCATTGTTGATGGTCATCACCATCACTTTTC
*
13305813 ATAGCTCGATAGCCAGAGCTATCCCTTTTCAT
66 ATAGCTCGATAGCAAGAGCTATCCCTTTTCAT
13305845 TTTTCAATGA
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 85 1.00
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (120 bp):
TTTTCATAATTTTGATGGTAGTCACCATCCCTGTTCATTGTTGATGGTCATCACCATCACTTTTC
ATAGCTCGATAGCAAGAGCTATCCCTTTTCATGACTTGGTAGCCGAGGCTACCCT
Found at i:13309138 original size:732 final size:735
Alignment explanation
Indices: 13307266--13309959 Score: 3846
Period size: 732 Copynumber: 3.7 Consensus size: 735
13307256 ATTTGATTAA
13307266 ATAATTTTCTTAAAAAATTAATTTAGG-AAATCTATGTAATTTTTGGGAAAATTAATTTTGATTA
1 ATAATTTTCTTAAAAAATTAATTT-GGAAAATCTATGTAATTTTTGGGAAAATTAATTTTGATTA
* * * *
13307330 AGTAAAATTGTAACACCCCTAACCTGTTTCTGTCACCAAAATAAGGTTACGGAGCATTACCATAA
65 AGTAAAATTGTAACACCCCTAACCTGTATCTGTCACCGAAATAGGGTTACGGAGCATTACCGTAA
* *
13307395 AACCATAACATCACAACATTCATTTTTAAACATTTCATTAAGCATAGCAAATTCCACACATACAC
130 AACCATAACATCACAACATTCATTTCTAAACATTTCATTAAGCATAGCAAAGTCCACACATACAC
* * *
13307460 ATGTTTATTGTCTCTTAATCGAGCCTTGCAGGCCCTAGAAACACTTTAGAAACAATTC-AGGACT
195 ATGCTTATTGTCCCTTAATCGAGCCTTCCAGGCCCTAGAAACACTTTAGAAACAATTCGA-GACT
* * * * *
13307524 AAATCGGGAATATTTAAAACATTAAGGAGAAAGTGAGAAAAATTGAAGCTGCAGAGGTAACACGG
259 AAATCAGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAGGGGTCACACGG
* * *
13307589 CTGAGAAACACGCCCATGTCTTAGGCCATGTAAAATCTGAAATAGGGACACACAGCTGTGTCCCA
324 CTGAGAAACACGCCCATGTCTCAAGCCATGTAAAATTTGAAATAGGGACACACAGCTGTGTCCCA
* * * * *
13307654 ACCCGTTTCCGTGCTCATGTAACTCTTTAACTTGGATTACACGGTCAACCTTCAAAATCACCTTA
389 ACCCGTGTCCGTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTCAAAATCACCTTA
* * * * * *
13307719 CACGCCCGTCTACCAGGTCGTGTAACTTTTAAAAAGCAACATTTAAAACCAAAAGGGGACACACG
454 CATGCCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACATTTAAAACCTATAGGGGACACACG
* *
13307784 GCCGTCTCGCATGGTTGTGTGTCACACACGGTTGTG--ACACGCCAGTGTCTTAGGCA-GTGCGG
519 GCCGTGTCGCATGGTTGTGTGTCACACACGGTTGTGACACACGCCAGTGTCTTAGCCATGTGC--
* * *
13307846 ACAAGAAATTGGCTAAAATTCATGCCATTTCTTTCACCCATTCAAGCTTGAACCTAAAATTAAAT
582 ACAAGAAATTGGCTAAAATTCAAGCCATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACT
*
13307911 TGCACATATCATTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCA
647 TGCACATATAATTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCA
*
13307976 CATTCCATTAAACTAATATGCCAT
712 AATTCCATTAAACTAATATGCCAT
* * *
13308000 ATAATTTTCTTAAAAAATTAATTTCGAAAATCTAAGTAATTTTTGGGAAAATTAATTTTGATTAC
1 ATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAATTAATTTTGATTAA
* * *
13308065 GTAAAATTCTAACACCCCTAACCTGTATCTGTCACCGGAATAGGGTTATGGAGCATTACCGTAAA
66 GTAAAATTGTAACACCCCTAACCTGTATCTGTCACCGAAATAGGGTTACGGAGCATTACCGTAAA
* * * *
13308130 ACCATAATATCACAACGTTCATTTCTAAATATTTCATTGAGCATAGCAAAGTCCACACATACACA
131 ACCATAACATCACAACATTCATTTCTAAACATTTCATTAAGCATAGCAAAGTCCACACATACACA
* *
13308195 TGCTTATTGCCCCTTAATCGAGCCTTCCAGGCCCTAGAAACACTTTAGAAACAATTCGGGACTAA
196 TGCTTATTGTCCCTTAATCGAGCCTTCCAGGCCCTAGAAACACTTTAGAAACAATTCGAGACTAA
* * *
13308260 ATCAGGAATATTTAAAACATTAAAGAGAAAGATAGAAAAATTTAAGCTGCAGGGGTCACATGGCT
261 ATCAGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAGGGGTCACACGGCT
* * * * *
13308325 GGGAAACAC-CCCGTGTCTCAAGCCATGTAAAATTAGAAATAGGGACACACAGCAGTGTCACAAC
326 GAGAAACACGCCCATGTCTCAAGCCATGTAAAATTTGAAATAGGGACACACAGCTGTGTCCCAAC
* * * * * * * *
13308389 CTGTGTCCGTGCTCATGTAACTCTATGACTTGGGTTGCATGGTGAACCTTCAAAATGACCTTCCA
391 CCGTGTCCGTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTCAAAATCACCTTACA
* * *
13308454 TGCCCGTGTGCCA-GTCGTGTAACTTTTGAAAAGAAACCTTTAAAACCTATAGGGGACACACGAC
456 TGCCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACATTTAAAACCTATAGGGGACACACGGC
* *
13308518 CGTGTCGCATGGTTGTGTGTCACACACGGTTGCGACACACGCCCGTGTCTTA-CCATGTGCACAA
521 CGTGTCGCATGGTTGTGTGTCACACACGGTTGTGACACACGCCAGTGTCTTAGCCATGTGCACAA
*
13308582 GAAATTGGCTAAAATTCAAGCCATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTGCG
586 GAAATTGGCTAAAATTCAAGCCATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTGCA
13308647 CATATAATTAAGACCTTAAAACATACCTAAACAT-CAATAATATGACCAATTCAAATGACCAAAT
651 CATATAATTAAGACCTTAAAACATACCTAAACATAC-ATAATATGACCAATTCAAATGACCAAAT
13308711 TCCATTAAACTAATATGCCAT
715 TCCATTAAACTAATATGCCAT
* *
13308732 ATAATTTTCTTAAAAAATCAATTTGGAAAATCTATGTAATTTTTGGGAAAATTAATTTTGATCAA
1 ATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAATTAATTTTGATTAA
* * * *
13308797 GAAAAATTGTAAC-CCCTTAACCTATAAT-TGTCACCGAAATAGGGTTACGGAGCATTACCTTAA
66 GTAAAATTGTAACACCCCTAACCTGT-ATCTGTCACCGAAATAGGGTTACGGAGCATTACCGTAA
* * * * *
13308860 AACCATAACATCACAAAATTCATTTCTAAGA-ATTTCATTAAGCATAGGATAGTCCATACGTACA
130 AACCATAACATCACAACATTCATTTCTAA-ACATTTCATTAAGCATAGCAAAGTCCACACATACA
* * * *
13308924 CATACTTATTGTCCCTTAATCGAGCCTTCCATGCCCCAGAAACACTTTAGAAATAATTCGAGACT
194 CATGCTTATTGTCCCTTAATCGAGCCTTCCAGGCCCTAGAAACACTTTAGAAACAATTCGAGACT
* * *
13308989 AAATCGGGAATATTTAAAACATTAAGGAGAAAGTTACAAAAATTTAAGCTGTAGGGGTCACACGG
259 AAATCAGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAGGGGTCACACGG
* *
13309054 CTGAGAAACATGCCCATCTCTCAAGCCATGTAAAATTTGAAATAGGGACACACAGCTGTGTCCCA
324 CTGAGAAACACGCCCATGTCTCAAGCCATGTAAAATTTGAAATAGGGACACACAGCTGTGTCCCA
* * *
13309119 GCCCGTGTCCCTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTGAAAATCACCTTA
389 ACCCGTGTCCGTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTCAAAATCACCTTA
* * * * * *
13309184 CATGCCTGTGTGCCAGGTTGCGTAACTTTTGAAATGCCACATTTAAAACGTATAGGGGACACACG
454 CATGCCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACATTTAAAACCTATAGGGGACACACG
* * * *
13309249 GCCGTGTCGCATGGTTGTGTGCCACACACGGTCGTGACACAC-CCATGTGTCTTAGGCCGTGTGG
519 GCCGTGTCGCATGGTTGTGTGTCACACACGGTTGTGACACACGCCA-GTGTCTTA-GCCATGTGC
* ** *
13309313 ACAAGAAATTGGCTAAAATTTAAGTTATTTCTTTCACCCATTCAAGCTTGAACCTACAATTGACT
582 ACAAGAAATTGGCTAAAATTCAAGCCATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACT
*
13309378 TGCCCATATAATTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCA
647 TGCACATATAATTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCA
13309443 AATTCCATTAAACTAATATGCC--
712 AATTCCATTAAACTAATATGCCAT
13309465 ---A------T-----A-TAATTT------TC--T-TAA--------AAAATTAATTTTGATTAA
1 ATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAATTAATTTTGATTAA
* * *
13309498 GTAAAATTGTAACACCCTTAACTTGTATCTGTCACCGGAATAGGGTTACGGAGCATTACCGTAAA
66 GTAAAATTGTAACACCCCTAACCTGTATCTGTCACCGAAATAGGGTTACGGAGCATTACCGTAAA
* * *
13309563 ACCATAACATCACAACATTCATTTCTAAACGTTTCCTTAGGCATAGCAAAGTCCACACATACACA
131 ACCATAACATCACAACATTCATTTCTAAACATTTCATTAAGCATAGCAAAGTCCACACATACACA
* * * * *
13309628 TGCTTATTGTCGCTTAATCGAGCCTTCTAGGCCCTA-AAACCACTTTAGAAATAATTTGGGACTA
196 TGCTTATTGTCCCTTAATCGAGCCTTCCAGGCCCTAGAAA-CACTTTAGAAACAATTCGAGACTA
*
13309692 AATCAGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAGGGGTCACACGAC
260 AATCAGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAGGGGTCACACGGC
* *
13309757 TGAGAAACACGCCCATGTCTCAAGCCATGTAAAATTTGAAGTAGGGACACACAGCTGTGTCCCAG
325 TGAGAAACACGCCCATGTCTCAAGCCATGTAAAATTTGAAATAGGGACACACAGCTGTGTCCCAA
13309822 CCCGTGTCCGTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTCAAAATCACCTTAC
390 CCCGTGTCCGTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTCAAAATCACCTTAC
* *
13309887 ATGCCTGTGTGCCAGGTCGTGTAACTTTTGAAAAGCCACATTTAAAACCTATAGGGGACACACGG
455 ATGCCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACATTTAAAACCTATAGGGGACACACGG
*
13309952 TCGTGTCG
520 CCGTGTCG
13309960 TTGGTAGCTA
Statistics
Matches: 1770, Mismatches: 172, Indels: 68
0.88 0.09 0.03
Matches are distributed among these distances:
701 35 0.02
702 406 0.23
709 3 0.00
710 1 0.00
712 2 0.00
718 5 0.00
719 1 0.00
724 1 0.00
730 1 0.00
731 224 0.13
732 415 0.23
733 204 0.12
734 320 0.18
735 151 0.09
736 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (735 bp):
ATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAATTAATTTTGATTAA
GTAAAATTGTAACACCCCTAACCTGTATCTGTCACCGAAATAGGGTTACGGAGCATTACCGTAAA
ACCATAACATCACAACATTCATTTCTAAACATTTCATTAAGCATAGCAAAGTCCACACATACACA
TGCTTATTGTCCCTTAATCGAGCCTTCCAGGCCCTAGAAACACTTTAGAAACAATTCGAGACTAA
ATCAGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAGGGGTCACACGGCT
GAGAAACACGCCCATGTCTCAAGCCATGTAAAATTTGAAATAGGGACACACAGCTGTGTCCCAAC
CCGTGTCCGTGCTCATGTAACTCTCTGACCTGGGTTACACGGTCAACCTTCAAAATCACCTTACA
TGCCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACATTTAAAACCTATAGGGGACACACGGC
CGTGTCGCATGGTTGTGTGTCACACACGGTTGTGACACACGCCAGTGTCTTAGCCATGTGCACAA
GAAATTGGCTAAAATTCAAGCCATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTGCA
CATATAATTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATT
CCATTAAACTAATATGCCAT
Found at i:13321516 original size:736 final size:733
Alignment explanation
Indices: 13320106--13321780 Score: 2779
Period size: 736 Copynumber: 2.3 Consensus size: 733
13320096 TAACAGTCTC
* *
13320106 ATGGTTGTGTGTCACACACGGTCGTGACACACCCTCGTGTCTTAGGCCGTGTGGACAAGAAATTG
1 ATGGTTGTGTGTCACACACGGTTGTGACACACCCCCGTGTCTTAGGCCGTGTGGACAAGAAATTG
* *
13320171 GCTAAAATTCAAGTCATTTCTTTCACCCATTCAAGCTTTAACCTACAATTGACTTGCCCATATAA
66 GCTAAAATTCAAG-CATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTG--CATATAA
* *
13320236 TTAAGAGCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTCCATTAA
128 TTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTTCATTAA
* *
13320301 ACTAATATACCATATAATTTTCTTAAAAAATTAATTTGGAAAATCTGTGTAATTTTTGGGAAAAT
193 ACTAATATGCCATATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAAT
* * *
13320366 TAATTTTGATTAAGTAAAATTGTAACACCCTTAACCTGTATCTGTCAGTGAAATAGGGTTACGGA
258 TAATTTTGATTAAGTAAAATTCTAACACCCTTAACCTGTATCTATCACTGAAATAGGGTTACGGA
* * *
13320431 GCATTACTGTAAAACCATAACATCACAACATTCATTTCTGAACATTTCAATATGCATAGCAAAGT
323 GCATTACCGTAAAACCATAACATCACAACATTCATTTCTAAACATTTCAATAGGCATAGCAAAGT
*
13320496 CCACACATACACATGTTTATTGTCGCTTAATCGAGCCTTCCAGGCCCTAGAACAACTTTAGAAAT
388 CCACACATACACATGCTTATTGTCGCTTAATCGAGCCTTCCAGGCCCTAGAACAACTTTAGAAAT
* *
13320561 AATTCGGGACTAAATCGGGGATATTTAAAACATTAAGGAGAAAGTTAGAAGAATTTAAACTGCAG
453 AATTCGGGACTAAATCGGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAACTGCAG
* *
13320626 GGGTCACACGACTGAGAAACACGCCCATGTCTCAGGCCATGTAAAAATTGAACTAGGGACACACA
518 GGCTCACACGACTGAGAAACACGCCCATGTCTCAGGCCATGTAAAAATTGAAATAGGGACACACA
* * *
13320691 GCTGTGTCCCAGCCCGTGTCCATGCTCATGTAACTCTCTGACTTGGGTTACACAGTCAACCTTCA
583 GCTGTGTCCCAGCCCGTGTCCATGCTCATGTAACTCTCTAACTTGGATTACACAGTCAACATTCA
13320756 AGATGACCTTGCACACCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACCTTTAAAACCTACA
648 AGATGACCTTGCACACCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACCTTTAAAACCTACA
*
13320821 GGGGACATACGGTCGTGTCGA
713 GGGGACACACGGTCGTGTCGA
13320842 ATGGTTGTGTGTCACACACGGTTGTGACACACCCCCGTGTCTTAGGCCGTGTGGACAAGAAATTG
1 ATGGTTGTGTGTCACACACGGTTGTGACACACCCCCGTGTCTTAGGCCGTGTGGACAAGAAATTG
* * * * *
13320907 GCTCAAATTCAAGCAATTTCTTTCCCCCTTTCAAGCTTGAGCATACAATTAACTTGCAAATATAA
66 GCTAAAATTCAAGC-ATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTGC--ATATAA
13320972 TTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTTCATTAA
128 TTAAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTTCATTAA
13321037 ACTAATATGCCATATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAAT
193 ACTAATATGCCATATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAAT
* * *
13321102 TAATTTTGATTAAGTAAAATTCTAACACCCTTAACTTGTATCTATCACTGGAATAGGGTTACTGA
258 TAATTTTGATTAAGTAAAATTCTAACACCCTTAACCTGTATCTATCACTGAAATAGGGTTACGGA
*
13321167 GCATTACCGTAAAACCATAACATCACAACATTCATTTCTAAACATTTCATTAGGCATAGCAAAGT
323 GCATTACCGTAAAACCATAACATCACAACATTCATTTCTAAACATTTCAATAGGCATAGCAAAGT
* *
13321232 CTACACATACACATGCTTATTGTCGCTTAATCGAGCCTTCCAGGCCCTAGAACCACTTTAGAAAT
388 CCACACATACACATGCTTATTGTCGCTTAATCGAGCCTTCCAGGCCCTAGAACAACTTTAGAAAT
*
13321297 AATTCGGGACTAAATCGGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAGCTGCAG
453 AATTCGGGACTAAATCGGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAACTGCAG
* *
13321362 GGCTCACACGATTGAGAAACACGCCCATGTCTCAGGCCATGTAAAATTTGAAATAGGGACACACA
518 GGCTCACACGACTGAGAAACACGCCCATGTCTCAGGCCATGTAAAAATTGAAATAGGGACACACA
* * *
13321427 GCTGTGTCCCAGCCCGTGTCCGTGCTCATGTAACTCTTTAACTTGGATTACACGGTCAACATTCA
583 GCTGTGTCCCAGCCCGTGTCCATGCTCATGTAACTCTCTAACTTGGATTACACAGTCAACATTCA
* * *
13321492 AGATGACCTTGCACGCCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGTAACCTTTAAAACCTACG
648 AGATGACCTTGCACACCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACCTTTAAAACCTACA
* *
13321557 GGGGATACACGGTCGTGTCGC
713 GGGGACACACGGTCGTGTCGA
*
13321578 ATGGTTGTGTGTCACACACGGTTGTGACAC-CCCCCGTGTCTTAGGCCGTGTGCACAAGAAATTG
1 ATGGTTGTGTGTCACACACGGTTGTGACACACCCCCGTGTCTTAGGCCGTGTGGACAAGAAATTG
* * *
13321642 GCTAAAATTCAAGCCATTTCTTTCACCCATTCAAGATTGAACCTACAATTAGCTTGC--A-CA-T
66 GCTAAAATTCAAG-CATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTGCATATAATT
**
13321703 --GGTCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTTCATTAAAC
130 AAGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTTCATTAAAC
13321766 TAATATGCCATATAA
195 TAATATGCCATATAA
13321781 GGTACCACAA
Statistics
Matches: 879, Mismatches: 56, Indels: 17
0.92 0.06 0.02
Matches are distributed among these distances:
727 76 0.09
729 1 0.00
730 1 0.00
731 1 0.00
734 1 0.00
735 82 0.09
736 717 0.82
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (733 bp):
ATGGTTGTGTGTCACACACGGTTGTGACACACCCCCGTGTCTTAGGCCGTGTGGACAAGAAATTG
GCTAAAATTCAAGCATTTCTTTCACCCATTCAAGCTTGAACCTACAATTAACTTGCATATAATTA
AGACCTTAAAACATACCTAAACATACATAATATGACCAATTCAAATGACCAAATTTCATTAAACT
AATATGCCATATAATTTTCTTAAAAAATTAATTTGGAAAATCTATGTAATTTTTGGGAAAATTAA
TTTTGATTAAGTAAAATTCTAACACCCTTAACCTGTATCTATCACTGAAATAGGGTTACGGAGCA
TTACCGTAAAACCATAACATCACAACATTCATTTCTAAACATTTCAATAGGCATAGCAAAGTCCA
CACATACACATGCTTATTGTCGCTTAATCGAGCCTTCCAGGCCCTAGAACAACTTTAGAAATAAT
TCGGGACTAAATCGGGAATATTTAAAACATTAAGGAGAAAGTTAGAAAAATTTAAACTGCAGGGC
TCACACGACTGAGAAACACGCCCATGTCTCAGGCCATGTAAAAATTGAAATAGGGACACACAGCT
GTGTCCCAGCCCGTGTCCATGCTCATGTAACTCTCTAACTTGGATTACACAGTCAACATTCAAGA
TGACCTTGCACACCCGTGTGCCAGGTCGTGTAACTTTTGAAAAGCAACCTTTAAAACCTACAGGG
GACACACGGTCGTGTCGA
Found at i:13323616 original size:137 final size:137
Alignment explanation
Indices: 13323372--13323618 Score: 305
Period size: 137 Copynumber: 1.8 Consensus size: 137
13323362 ACATTAGCTA
* * * ** * *
13323372 ACGGTCAGAATGTAGCTACACGATGCCGTTCACACAAGCTGACTAGTATTCGCAAGAAATGTCAA
1 ACGGTCAAAATGTAGCTACACGATGCCGCTCACACAAGCTGACCAGTACCCGCAACAAATGCCAA
* * * * *
13323437 AACTCAACCATCGGTAGGACATTCCGGACTAGCACCCGAAACATGGTAACCTGGGTTTTCTCACA
66 AACTCAACCATCGGTAGAACATTCAGGACCAACACCCAAAACATGGTAACCTGGGTTTTCTCACA
13323502 CAAGCCG
131 CAAGCCG
* * * * *
13323509 ACGGTCAAAATGTAGCTATATGATGTCGCTCACACAAGCTGACCAGTACCCGCAACATATGCCGA
1 ACGGTCAAAATGTAGCTACACGATGCCGCTCACACAAGCTGACCAGTACCCGCAACAAATGCCAA
* * * *
13323574 ACCTCAGCCATCGGTAGAACATTTAGGACCAACACTCAAAACATG
66 AACTCAACCATCGGTAGAACATTCAGGACCAACACCCAAAACATG
13323619 AAAACCCTAT
Statistics
Matches: 89, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
137 89 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.20
Consensus pattern (137 bp):
ACGGTCAAAATGTAGCTACACGATGCCGCTCACACAAGCTGACCAGTACCCGCAACAAATGCCAA
AACTCAACCATCGGTAGAACATTCAGGACCAACACCCAAAACATGGTAACCTGGGTTTTCTCACA
CAAGCCG
Found at i:13324715 original size:39 final size:40
Alignment explanation
Indices: 13324596--13324724 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 40
13324586 AATTGGACAA
* * * *
13324596 AAAACACCACTAAAAATCAAGCATTAGCGGCGCTTTTCT-A
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGCG-TTTTTTGG
* ** * * * *
13324636 AAAACGCTGCTAAAGGTCGAGCATTAGTGGCGATTGTTGG
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTTGG
*
13324676 AAAACGCCGCTAAAAAT-AAGCATTAGCGACGTTTTTTGG
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTTGG
*
13324715 AAAGCGCCGC
1 AAAACGCCGC
13324725 AGAAAGCGTA
Statistics
Matches: 68, Mismatches: 20, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
39 29 0.43
40 39 0.57
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTTGG
Found at i:13324825 original size:41 final size:41
Alignment explanation
Indices: 13324765--13324961 Score: 236
Period size: 41 Copynumber: 4.8 Consensus size: 41
13324755 TGACTTTTTG
* * *
13324765 GGGCCTTTAGCGGCATTTTTGAAGATGCGCCGCTAAAGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * * * *
13324806 GGTCCTTTAACGGTGTTTTT-AGAGAAACGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGA-AGAAGCGCCGCTAATGCTC
* *
13324847 GGGCCTTTAGCGGCGTTTTTGAAGGAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * **
13324888 GAGCCTTTAGCGGTGTTTTTGAA-AATTTGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAA-GCGCCGCTAATGCTC
13324929 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
13324962 AGAAACATTT
Statistics
Matches: 129, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.02
41 124 0.96
42 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
Found at i:13324902 original size:82 final size:81
Alignment explanation
Indices: 13324765--13324959 Score: 261
Period size: 82 Copynumber: 2.4 Consensus size: 81
13324755 TGACTTTTTG
* *
13324765 GGGCCTTTAGCGGCATTTTTGAA-GATGCGCCGCTAAAGCTCGGTCCTTTAACGGTGTTTTTAGA
1 GGGCCTTTAGCGGCGTTTTTGAAGGA-GCGCCACTAAAGCTCGGTCCTTTAACGGTGTTTTT-GA
13324829 GAAA-CGCCACTAATGCTC
64 -AAATCGCCACTAATGCTC
* *
13324847 GGGCCTTTAGCGGCGTTTTTGAAGGAGCGCCACTAATGCTCGAG-CCTTTAGCGGTGTTTTTGAA
1 GGGCCTTTAGCGGCGTTTTTGAAGGAGCGCCACTAAAGCTCG-GTCCTTTAACGGTGTTTTTGAA
* *
13324911 AATTTGCCGCTAATGCTC
65 AA-TCGCCACTAATGCTC
*
13324929 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCC
1 GGGCCTTTAGCGGCGTTTTTGAAGGAGCGCC
13324960 GCAGAAACAT
Statistics
Matches: 102, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
80 3 0.03
81 2 0.02
82 94 0.92
83 3 0.03
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (81 bp):
GGGCCTTTAGCGGCGTTTTTGAAGGAGCGCCACTAAAGCTCGGTCCTTTAACGGTGTTTTTGAAA
ATCGCCACTAATGCTC
Found at i:13325085 original size:27 final size:27
Alignment explanation
Indices: 13325055--13325116 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
13325045 TTAAAAATAG
** *
13325055 ATAAATTTGAAATAATGACACGTAGAA
1 ATAAATTTGAAATAAAAAAACGTAGAA
13325082 AT-AATTTGAAATAAAAAAACGTAGAA
1 ATAAATTTGAAATAAAAAAACGTAGAA
*
13325108 AAAAATTTG
1 ATAAATTTG
13325117 TTAAAAATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.56, C:0.05, G:0.13, T:0.26
Consensus pattern (27 bp):
ATAAATTTGAAATAAAAAAACGTAGAA
Found at i:13326247 original size:16 final size:16
Alignment explanation
Indices: 13326226--13326258 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
13326216 ACTTAGTAAT
13326226 TAAAAGATACAATTAA
1 TAAAAGATACAATTAA
13326242 TAAAAGATACAATTAA
1 TAAAAGATACAATTAA
13326258 T
1 T
13326259 TGTATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (16 bp):
TAAAAGATACAATTAA
Found at i:13328666 original size:15 final size:15
Alignment explanation
Indices: 13328646--13328676 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13328636 TTGAACGACA
13328646 TAATTCAAAGTTATT
1 TAATTCAAAGTTATT
13328661 TAATTCAAAGTTATT
1 TAATTCAAAGTTATT
13328676 T
1 T
13328677 CATTTATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (15 bp):
TAATTCAAAGTTATT
Found at i:13328723 original size:22 final size:21
Alignment explanation
Indices: 13328656--13328734 Score: 67
Period size: 22 Copynumber: 3.8 Consensus size: 21
13328646 TAATTCAAAG
13328656 TTATTTAATTCAAAGTTATTTCAT
1 TTATTTAATTCAAAG-TATTT--T
*
13328680 TTATGTAATT-AAA-TA--TT
1 TTATTTAATTCAAAGTATTTT
13328697 TTATTTAATTCAAAGTCATTTT
1 TTATTTAATTCAAAGT-ATTTT
* *
13328719 TTATTTATTTTAAAGT
1 TTATTTAATTCAAAGT
13328735 TAAAATTAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
17 10 0.22
18 3 0.07
19 2 0.04
20 1 0.02
21 2 0.04
22 16 0.35
23 3 0.07
24 9 0.20
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (21 bp):
TTATTTAATTCAAAGTATTTT
Found at i:13329142 original size:142 final size:142
Alignment explanation
Indices: 13328980--13329938 Score: 1801
Period size: 142 Copynumber: 6.8 Consensus size: 142
13328970 AGGACACTTC
* *
13328980 ATAACTTTTATAATATTAAGATAAAATTTCTAACTACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
13329045 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
13329110 ATAATTATTAAG
131 ATAATTATTAAG
13329122 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
* *
13329187 GATAACTTATATAATATTAGGATTACTTATATAGTATTAAGACAATTTCTAATTACGTAACTTAT
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
13329252 ATAATTATTAAG
131 ATAATTATTAAG
*
13329264 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATGAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
*
13329329 GATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
13329394 ATAATTATTAAG
131 ATAATTATTAAG
*
13329406 ATAACTTATGTAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
*
13329471 GATAACTTATATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTAT
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
13329536 ATAATTATTAAG
131 ATAATTATTAAG
*
13329548 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAATTTAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
13329613 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
13329678 ATAATTATTAAG
131 ATAATTATTAAG
*
13329690 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAATTTAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
*
13329755 GATAACTTATATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTAT
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
13329820 ATAATTATTAAG
131 ATAATTATTAAG
*
13329832 ATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
*
13329897 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGA
66 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGA
13329939 TAAAATTACT
Statistics
Matches: 797, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
142 797 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (142 bp):
ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTAT
ATAATTATTAAG
Found at i:13329659 original size:66 final size:66
Alignment explanation
Indices: 13329589--13329938 Score: 289
Period size: 66 Copynumber: 5.0 Consensus size: 66
13329579 AACCACACAT
13329589 CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAG
1 CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAG
13329654 A
66 A
* *
13329655 CAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATT-T
1 CAATTTCTAA-T---T-AC--ATA-AA-T-TTAAGATAACTTATATAATATTAAGAT-TACTTAT
* ** *
13329719 CTA--ACCACACA
55 ATAGTATTA-AGA
*
13329730 TCAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAG
1 -CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAA
13329795 GA
65 GA
* *
13329797 CAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTAC
1 CAATTTCTAA-T---T-AC--ATA-AA-T-TTAAGATAACTTATATAATATTAAGAT-TACTTA-
** * *
13329862 TA-ACCA-CACA-T
54 TATAGTATTA-AGA
* *
13329873 CAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAATATTAAG
1 CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAG
13329938 A
66 A
13329939 TAAAATTACT
Statistics
Matches: 225, Mismatches: 27, Indels: 64
0.71 0.09 0.20
Matches are distributed among these distances:
64 2 0.01
65 10 0.04
66 78 0.35
67 4 0.02
68 6 0.03
69 6 0.03
70 2 0.01
71 8 0.04
72 2 0.01
73 6 0.03
74 6 0.03
75 6 0.03
76 78 0.35
77 9 0.04
78 2 0.01
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (66 bp):
CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAG
A
Found at i:13329919 original size:86 final size:86
Alignment explanation
Indices: 13329811--13330024 Score: 401
Period size: 86 Copynumber: 2.5 Consensus size: 86
13329801 TTCTAATTAC
*
13329811 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAA
1 ATAACTTATATAA-TATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAA
13329876 TTTCTAATTACATAAAATTAAG
65 TTTCTAATTACATAAAATTAAG
13329898 ATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAAT
1 ATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAAT
13329963 TTCTAATTACATAAAATTAAG
66 TTCTAATTACATAAAATTAAG
*
13329984 ATAACTTATATAATATTAAGATTACTTATATAGTATTAAGA
1 ATAACTTATATAATATTAAGATTACTTATATAATATTAAGA
13330025 CAATTTCTAA
Statistics
Matches: 125, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
86 112 0.90
87 13 0.10
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (86 bp):
ATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAAT
TTCTAATTACATAAAATTAAG
Found at i:13330057 original size:142 final size:142
Alignment explanation
Indices: 13329898--13331196 Score: 2417
Period size: 142 Copynumber: 9.2 Consensus size: 142
13329888 TAAAATTAAG
* *
13329898 ATAACTTATATAA-TATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
13329962 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330027 ATTTCTAATTAC
131 ATTTCTAATTAC
13330039 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
*
13330104 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTATATAGTATTAAGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330169 ATTTCTAATTAC
131 ATTTCTAATTAC
*
13330181 GTAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* *
13330246 TTTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330311 ATTTCTAATTAC
131 ATTTCTAATTAC
*
13330323 ATAACTTATATAATTATTAAGATAACTTATGTAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
*
13330388 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAGGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330453 ATTTCTAATTAC
131 ATTTCTAATTAC
13330465 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
*
13330530 TTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330595 ATTTCTAATTAC
131 ATTTCTAATTAC
13330607 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* *
13330672 TTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAGGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330737 ATTTCTAATTAC
131 ATTTCTAATTAC
*
13330749 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGAT-AAATTACTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
*
13330813 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAGGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
*
13330878 ACTTCTAATTAC
131 ATTTCTAATTAC
13330890 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
*
13330955 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTATATAGTATTAAGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13331020 ATTTCTAATTAC
131 ATTTCTAATTAC
* *
13331032 ATGACTTATATAATTATTAAGATAAGTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
1 ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
13331097 TTTCTAATTACAT-AAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
66 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13331161 ATTTCTAATTAC
131 ATTTCTAATTAC
13331173 ATAACTTATATAA-TATTAAGATAA
1 ATAACTTATATAATTATTAAGATAA
13331197 AATTTCTAAC
Statistics
Matches: 1129, Mismatches: 27, Indels: 5
0.97 0.02 0.00
Matches are distributed among these distances:
140 11 0.01
141 225 0.20
142 893 0.79
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (142 bp):
ATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
ATTTCTAATTAC
Found at i:13330059 original size:284 final size:291
Alignment explanation
Indices: 13328980--13331345 Score: 2101
Period size: 284 Copynumber: 8.4 Consensus size: 291
13328970 AGGACACTTC
* *
13328980 ATAACTTTTATAATATTAAGATAAAATTTCTAACTACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * **
13329045 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAG--ACAATTTCTAA--TTACAT-AA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* * * * * ** *
13329105 CTTAT-A-TA-AT-TATTAAGATAACTTATATAATATTAAGATAAAATT-TCTA--ACCACACAT
131 TTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGAT-TAATTATATAGTATTA-AGA-
* * * *
13329163 CAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTATATAGTATTAAG
193 CAATTTCTAATTACAT-AACTT---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAAG
* ** * * *
13329228 --ACAATTTCTAA-TTACGT-AACTTAT-A-TA-AT-TATTAAG
248 ATAAAATTTCTAACACACATCAATTTATAATTACATAAATTAAG
* * *
13329264 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATGAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * * **
13329329 GATAACTTATATAATATTAAGATTAATTATATAGTATTAAG--ACAATTTCTAA--TTACAT-AA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* * * * * * ** *
13329389 CTTAT-A-TA-AT-TATTAAGATAACTTATGTAATATTAAGATAAAATT-TCTA--ACCACACAT
131 TTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGAT-TAATTATATAGTATTA-AGA-
* * *
13329447 CAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATT-AG
193 CAATTTCTAATTACAT-AACTT---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAAG
* * ** * *
13329511 -GACAATTTCTAA-TTACAT-AACTTAT-A-TA-AT-TATTAAG
248 ATAAAATTTCTAACACACATCAATTTATAATTACATAAATTAAG
* * *
13329548 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAATTTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * **
13329613 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAG--ACAATTTCTAA--TTACAT-AA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* * * * * ** *
13329673 CTTAT-A-TA-AT-TATTAAGATAACTTATATAATATTAAGATAAAATT-TCTA--ACCACACAT
131 TTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGAT-TAATTATATAGTATTA-AGA-
* * *
13329731 CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATT-AG
193 CAATTTCTAATTACAT-AACTT---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAAG
* * ** * *
13329795 -GACAATTTCTAA-TTACAT-AACTTAT-A-TA-AT-TATTAAG
248 ATAAAATTTCTAACACACATCAATTTATAATTACATAAATTAAG
*
13329832 ATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
*
13329897 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
*
13329962 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
131 TTTCTAATTACAT-AAATTAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACA
13330027 ATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTA
195 ATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTA
*
13330092 ACCACACATCAATTTCTAATTACATAAAATTAAG
260 A-CACACATCAATTTATAATTACAT-AAATTAAG
* * * ** * ** * *
13330126 ATAACTTATATAATATTAGGAT-TACTTA-T-A-TA-GTATTAA-GAC-AATTTC-T--AATTAC
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
*
13330181 G-TAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCA
66 GATAACTTATATAA-TATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCA
*
13330245 ATTTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGAC
130 ATTTCTAATTACAT-AAATTAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGAC
*
13330310 AATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATGTAATATTAAGATAAAATTTCT
194 AATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCT
*
13330375 AACCACACATCAATTTCTAATTACATAAAATTAAG
259 AA-CACACATCAATTTATAATTACAT-AAATTAAG
* * * * * *
13330410 ATAACTTATATAATATTAAGAT-TACTTA-TATAGTATTAGGA-CAATTTCTAATTACAT-AACT
1 ATAACTTATATAATATTAAGATAAAATTACTA-ACTA-CA-CATCAATTTCTAATTACATAAAAT
*
13330471 T---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACAT
63 TAAGATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACAT
*
13330527 CAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAG
128 CAATTTCTAATTACATAAA-TTAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAG
13330592 ACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTT
192 ACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTT
*
13330657 CTAACCACACATCAATTTCTAATTACATAAATTTAAG
257 CTAA-CACACATCAATTTATAATTACATAAA-TTAAG
* * * * * *
13330694 ATAACTTATATAATATTAAGAT-TACTTA-TATAGTATTAGGA-CAATTTCTAATTACAT-AACT
1 ATAACTTATATAATATTAAGATAAAATTACTA-ACTA-CA-CATCAATTTCTAATTACATAAAAT
* *
13330755 T---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAAGAT-AAATTACTAACCACACAT
63 TAAGATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACAT
* *
13330810 CAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAGG
128 CAATTTCTAATTACAT-AAATTAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAG
*
13330875 ACAACTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTT
192 ACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTT
*
13330940 CTAACCACACATCAATTTCTAATTACATAAAATTAAG
257 CTAA-CACACATCAATTTATAATTACAT-AAATTAAG
* * * ** * ** *
13330977 ATAACTTATATAATATTAGGAT-TACTTA-T-A-TA-GTATTAA-GAC-AATTTC-T--AATT-A
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * * *
13331031 CATGACTTATATAATTATTAAGATAAGTTATATAATATTAAGATAAAATTTCTAACCACACATCA
66 GATAACTTATATAA-TATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCA
*
13331096 ATTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
130 ATTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACA
*
13331161 ATTTCTAATTACATAACTTATATAA-TATTAAG---A--TA-A-AAT-TT---CT--AA---C--
195 ATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTA
*
13331207 -CACACATCAATTTGTAATTACATAAAATTAAG
260 ACACACATCAATTTATAATTACAT-AAATTAAG
* *
13331239 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
*
13331304 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAGA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGA
13331346 CAATTTCTAA
Statistics
Matches: 1922, Mismatches: 98, Indels: 136
0.89 0.05 0.06
Matches are distributed among these distances:
262 52 0.03
263 3 0.00
264 1 0.00
265 1 0.00
266 2 0.00
267 4 0.00
268 1 0.00
269 7 0.00
270 1 0.00
271 1 0.00
272 29 0.02
273 13 0.01
274 5 0.00
275 4 0.00
276 8 0.00
277 5 0.00
278 2 0.00
279 3 0.00
280 4 0.00
281 1 0.00
282 7 0.00
283 324 0.17
284 1263 0.66
285 2 0.00
286 23 0.01
287 11 0.01
288 11 0.01
289 17 0.01
290 8 0.00
291 11 0.01
292 6 0.00
293 14 0.01
294 74 0.04
295 2 0.00
296 2 0.00
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.39
Consensus pattern (291 bp):
ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
TTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACAA
TTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAA
CACACATCAATTTATAATTACATAAATTAAG
Found at i:13330059 original size:426 final size:437
Alignment explanation
Indices: 13328980--13331074 Score: 1917
Period size: 426 Copynumber: 4.9 Consensus size: 437
13328970 AGGACACTTC
* *
13328980 ATAACTTTTATAATATTAAGATAAAATTTCTAACTACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * **
13329045 GATAACTTATATAATATTAAGATTACTTATATAGTATTAAG--ACAATTTCTAA--TTACAT-AA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* * * * * * ** *
13329105 CTTAT-A-TA-AT--TATTAAGATAACTTATATAATATTAAGATAAAATT-TCTA--ACCACACA
131 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGAT-TACTTATATAGTATTA-AGA
* * * *
13329162 TCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTATATAGTATTAA
194 -CAATTTCTAATTACAT-AACTT---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAA
* ** * * * *
13329227 G-ACAATTTCTAA-TTACGT-AACTTAT-A-TA-AT-TATTAAGATAACTTATATAATATTAAGA
248 GAAAAATTTCTAACACACATCAATTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGA
* * * * * *
13329285 -TA-A-A-A-TTTCTAACCACACA-TC-AATTTC-TAATTACATAA-AATGAAGATAACTTATAT
313 TTATATATAGTAT-TAA-GACA-ATTCTAATTACATAATTATATAATTATTAAGATAACTTATAT
* *
13329341 AATATTAAGATTAATTATATAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAG
375 AATATTAAGATT-ATTATATAGTATAAACACAATTTCTAATTACATAA-TTATATAATTATTAAG
* * *
13329406 ATAACTTATGTAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * * **
13329471 GATAACTTATATAATATTAAGATTACTTATATAGTATT-AG-GACAATTTCTAA--TTACAT-AA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
* * * * * * ** *
13329531 CTTAT-A-TA-AT--TATTAAGATAACTTATATAATATTAAGATAAAATT-TCTA--ACCACACA
131 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGAT-TACTTATATAGTATTA-AGA
* * *
13329588 TCAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAA
194 -CAATTTCTAATTACAT-AACTT---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAA
* ** * * *
13329653 G-ACAATTTCTAA-TTACAT-AACTTAT-A-TA-AT-TATTAAGATAACTTATATAATATTAAGA
248 GAAAAATTTCTAACACACATCAATTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGA
* * * * *
13329711 -TA-A-A-A-TTTCTAACCACACA-TC-AATTTC-TAATTACATAAAT-TTAAGATAACTTATAT
313 TTATATATAGTAT-TAA-GACA-ATTCTAATTACATAATTATATAATTATTAAGATAACTTATAT
* **
13329767 AATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTATATAATTATTAAG
375 AATATTAAGATTA-TTATATAGTATAAACACAATTTCTAATTACATAA-TTATATAATTATTAAG
*
13329832 ATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
*
13329897 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAA
66 GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
13329962 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
131 TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
13330027 ATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTA
196 ATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGA-AAAATTTCTA
*
13330092 ACCACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTATAT
260 A-CACACATCAATTTCTAATTACAT-AAATTAAGATAACTTATATAATATTAAGATTA--TATAT
*
13330157 AGTATTAAGACAATTTCTAATTACGTAACTTATATAATTATTAAGATAACTTATATAATATTAAG
321 AGTATTAAGACAA-TTCTAATTACATAA-TTATATAATTATTAAGATAACTTATATAATATTAAG
* * * * * * * *
13330222 A-TA--AAAT-TTCTAACCACACA--TC-AATTTC-TAATTACATAA-AATGAAG
384 ATTATTATATAGTATAAACACA-ATTTCTAATTACATAATTATATAATTATTAAG
* ** * ** *
13330268 ATAACTTATATAATATTAAGAT-TAATTA-T-A-TA-GTATTAA-GAC-AATTTC-T--AATT-A
1 ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
* * *
13330322 CATAACTTATATAATTATTAAGATAACTTATGTAATATTAAGATAAAATTTCTAACCACACATCA
66 GATAACTTATATAA-TATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCA
*
13330387 ATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAGGAC
130 ATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGAC
13330452 AATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCT
195 AATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGA-AAAATTTCT
13330517 AACCACACATCAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAGATTACTTATA
259 AA-CACACATCAATTTCTAATTACATAAA-TTAAGATAACTTATATAATATTAAGATTA--TATA
13330582 TAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAA
320 TAGTATTAAGACAA-TTCTAATTACATAA-TTATATAATTATTAAGATAACTTATATAATATTAA
* * * * * * *
13330647 GA-TA--AAAT-TTCTAACCACACA--TC-AATTTC-TAATTACATAAAT-TTAAG
383 GATTATTATATAGTATAAACACA-ATTTCTAATTACATAATTATATAATTATTAAG
* * * * * *
13330694 ATAACTTATATAATATTAAGAT-TACTTA-TATAGTATTAGGA-CAATTTCTAATTACAT-AACT
1 ATAACTTATATAATATTAAGATAAAATTACTA-ACTA-CA-CATCAATTTCTAATTACATAAAAT
* *
13330755 T---AT-A--TA-AT--TATTAAGATAACTTATATAATATTAAGAT-AAATTACTAACCACACAT
63 TAAGATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACAT
*
13330810 CAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAGG
128 CAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAG
*
13330875 ACAACTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTT
193 ACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGA-AAAATTT
*
13330940 CTAACCACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTA
257 CTAA-CACACATCAATTTCTAATTACAT-AAATTAAGATAACTTATATAATATTAAGATTA--TA
* *
13331005 TATAGTATTAAGACAATTTCTAATTACATGACTTATATAATTATTAAGATAAGTTATATAATATT
318 TATAGTATTAAGACAA-TTCTAATTACAT-AATTATATAATTATTAAGATAACTTATATAATATT
13331070 AAGAT
381 AAGAT
13331075 AAAATTTCTA
Statistics
Matches: 1531, Mismatches: 82, Indels: 112
0.89 0.05 0.06
Matches are distributed among these distances:
425 291 0.19
426 944 0.62
427 2 0.00
428 23 0.02
429 11 0.01
430 11 0.01
431 17 0.01
432 8 0.01
433 12 0.01
434 6 0.00
435 15 0.01
436 100 0.07
437 11 0.01
438 5 0.00
439 5 0.00
440 4 0.00
441 10 0.01
442 10 0.01
443 7 0.00
444 3 0.00
445 10 0.01
446 26 0.02
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (437 bp):
ATAACTTATATAATATTAAGATAAAATTACTAACTACACATCAATTTCTAATTACATAAAATTAA
GATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAACCACACATCAA
TTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACA
ATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGAAAAATTTCTAA
CACACATCAATTTCTAATTACATAAATTAAGATAACTTATATAATATTAAGATTATATATAGTAT
TAAGACAATTCTAATTACATAATTATATAATTATTAAGATAACTTATATAATATTAAGATTATTA
TATAGTATAAACACAATTTCTAATTACATAATTATATAATTATTAAG
Found at i:13330151 original size:654 final size:654
Alignment explanation
Indices: 13329244--13330592 Score: 2545
Period size: 654 Copynumber: 2.1 Consensus size: 654
13329234 TCTAATTACG
* *
13329244 TAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAAT
1 TAACTTATATAA-TATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAAT
13329309 TTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACAA
65 TTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACAA
*
13329374 TTTCTAATTACATAACTTATATAATTATTAAGATAACTTATGTAATATTAAGATAAAATTTCTAA
130 TTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAA
13329439 CCACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATA
195 CCACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATA
*
13329504 GTATTAGGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGA
260 GTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGA
* *
13329569 TAAAATTTCTAACCACACATCAATTTCTAATTACATAAATTTAAGATAACTTATATAATATTAAG
325 TAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATGAAGATAACTTATATAATATTAAG
*
13329634 ATTACTTATATAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTAT
390 ATTAATTATATAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTAT
*
13329699 ATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAATTTAAGATAACTTA
455 ATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAAGATAACTTA
13329764 TATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTATATAATTATT
520 TATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTATATAATTATT
13329829 AAGATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAAT
585 AAGATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAAT
13329894 TAAGA
650 TAAGA
13329899 TAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAATT
1 TAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAATT
* *
13329964 TCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAAT
66 TCTAATTACATAAAATGAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACAAT
13330029 TTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAAC
131 TTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAAC
*
13330094 CACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAGGATTACTTATATAG
196 CACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAG
*
13330159 TATTAAGACAATTTCTAATTACGTAACTTATATAATTATTAAGATAACTTATATAATATTAAGAT
261 TATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGAT
13330224 AAAATTTCTAACCACACATCAATTTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGA
326 AAAATTTCTAACCACACATCAATTTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGA
*
13330289 TTAATTATATAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATG
391 TTAATTATATAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATA
13330354 TAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAAGATAACTTAT
456 TAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAAGATAACTTAT
13330419 ATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTATATAATTATTA
521 ATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTATATAATTATTA
* *
13330484 AGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAATTT
586 AGATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAATT
13330549 AAGA
651 AAGA
*
13330553 TAACTTATATAATATTAAGATTACTTATATAGTATTAAGA
1 TAACTTATATAATATTAAGATTACTTATATAATATTAAGA
13330593 CAATTTCTAA
Statistics
Matches: 678, Mismatches: 16, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
654 666 0.98
655 12 0.02
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (654 bp):
TAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTACTAACCACACATCAATT
TCTAATTACATAAAATGAAGATAACTTATATAATATTAAGATTAATTATATAGTATTAAGACAAT
TTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGATAAAATTTCTAAC
CACACATCAATTTCTAATTACATAAAATTAAGATAACTTATATAATATTAAGATTACTTATATAG
TATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATATAATATTAAGAT
AAAATTTCTAACCACACATCAATTTCTAATTACATAAAATGAAGATAACTTATATAATATTAAGA
TTAATTATATAGTATTAAGACAATTTCTAATTACATAACTTATATAATTATTAAGATAACTTATA
TAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAAGATAACTTAT
ATAATATTAAGATTACTTATATAGTATTAGGACAATTTCTAATTACATAACTTATATAATTATTA
AGATAACTTATATAATATTAAGATAAAATTACTAACCACACATCAATTTCTAATTACATAAAATT
AAGA
Found at i:13331061 original size:21 final size:20
Alignment explanation
Indices: 13331037--13331076 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 20
13331027 ATTACATGAC
13331037 TTATATAATTATTAAGATAAG
1 TTATATAA-TATTAAGATAAG
13331058 TTATATAATATTAAGATAA
1 TTATATAATATTAAGATAA
13331077 AATTTCTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (20 bp):
TTATATAATATTAAGATAAG
Found at i:13331218 original size:55 final size:55
Alignment explanation
Indices: 13331159--13331297 Score: 170
Period size: 66 Copynumber: 2.3 Consensus size: 55
13331149 AGTATTAAGA
13331159 CAATTTCTAATTACATAACTTATATAATATTAAGATAAAATTTCTAACCACACAT
1 CAATTTCTAATTACATAACTTATATAATATTAAGATAAAATTTCTAACCACACAT
*
13331214 CAATTTGTAATTACATAAAATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACA
1 CAA----T--TT-C-T--AATT-ACATAACTTATATAATATTAAGATAAAATTTCTAACCACACA
13331279 T
55 T
13331280 CAATTTCTAATTACATAA
1 CAATTTCTAATTACATAA
13331298 AATTAAGATA
Statistics
Matches: 71, Mismatches: 2, Indels: 22
0.75 0.02 0.23
Matches are distributed among these distances:
55 8 0.11
56 4 0.06
58 1 0.01
59 2 0.03
60 2 0.03
61 2 0.03
62 2 0.03
63 1 0.01
65 4 0.06
66 45 0.63
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (55 bp):
CAATTTCTAATTACATAACTTATATAATATTAAGATAAAATTTCTAACCACACAT
Found at i:13331361 original size:187 final size:187
Alignment explanation
Indices: 13331047--13331384 Score: 651
Period size: 187 Copynumber: 1.8 Consensus size: 187
13331037 TTATATAATT
*
13331047 ATTAAGATAAGTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAA
1 ATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAA
13331112 ATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAA
66 ATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAA
13331177 CTTATATAA-TATTAAGATAAAATTTCTAACCACACATCAATTTGTAATTACATAAA
131 CTTATATAATTATTAAGATAAAATTTCTAACCACACATCAATTTGTAATTACATAAA
13331233 ATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAA
1 ATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACAT-A
13331298 AATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATA
65 AATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATA
13331363 ACTTATATAATTATTAAGATAA
130 ACTTATATAATTATTAAGATAA
13331385 CTTATATAAT
Statistics
Matches: 149, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
186 62 0.42
187 76 0.51
188 11 0.07
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.38
Consensus pattern (187 bp):
ATTAAGATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAA
ATTAAGATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTACATAA
CTTATATAATTATTAAGATAAAATTTCTAACCACACATCAATTTGTAATTACATAAA
Found at i:13331363 original size:66 final size:66
Alignment explanation
Indices: 13331173--13331326 Score: 281
Period size: 66 Copynumber: 2.3 Consensus size: 66
13331163 TTCTAATTAC
* *
13331173 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTGTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTTATAACCACACATCAATTTCTAATTACATAAAATTAA
13331238 G
66 G
*
13331239 ATAACTTATATAATATTAAGATAAAATTTCTAACCACACATCAATTTCTAATTACATAAAATTAA
1 ATAACTTATATAATATTAAGATAAAATTTATAACCACACATCAATTTCTAATTACATAAAATTAA
13331304 G
66 G
13331305 ATAACTTATATAATATTAAGAT
1 ATAACTTATATAATATTAAGAT
13331327 TACTTATATA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 87 1.00
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.36
Consensus pattern (66 bp):
ATAACTTATATAATATTAAGATAAAATTTATAACCACACATCAATTTCTAATTACATAAAATTAA
G
Found at i:13331417 original size:55 final size:54
Alignment explanation
Indices: 13331305--13331422 Score: 150
Period size: 55 Copynumber: 2.1 Consensus size: 54
13331295 TAAAATTAAG
* * *
13331305 ATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATAACTTATATAATATTAAGAAAATTTCTAA-TAC
*
13331360 ATAACTTATATAATTATTAAGATAACTTATATAATATTAATATAAAATTTCT-A-AC
1 ATAACTTATATAA-TATTAAGATAACTTATATAATATT-A-AGAAAATTTCTAATAC
13331415 ATAACTTA
1 ATAACTTA
13331423 CGTAACTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
55 23 0.41
56 22 0.39
57 2 0.04
58 9 0.16
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (54 bp):
ATAACTTATATAATATTAAGATAACTTATATAATATTAAGAAAATTTCTAATAC
Found at i:13331536 original size:9 final size:8
Alignment explanation
Indices: 13331522--13331716 Score: 55
Period size: 9 Copynumber: 23.5 Consensus size: 8
13331512 TAACTTATAT
13331522 ATAACTCAC
1 ATAACT-AC
13331531 ATAACTTAC
1 ATAAC-TAC
*
13331540 ATAGCTTAC
1 ATAAC-TAC
*
13331549 AT-TCTAC
1 ATAACTAC
*
13331556 ACAACTTAC
1 ATAAC-TAC
*
13331565 ATGACATAC
1 ATAAC-TAC
13331574 ATAA-TAC
1 ATAACTAC
13331581 ATAACTGAC
1 ATAACT-AC
13331590 ATAACTAAC
1 ATAACT-AC
*
13331599 ATAA-TGC
1 ATAACTAC
**
13331606 ATAGTTTAC
1 ATA-ACTAC
13331615 ATAA-TAC
1 ATAACTAC
*
13331622 ACAACTTAC
1 ATAAC-TAC
*
13331631 ATAGCTTAC
1 ATAAC-TAC
*
13331640 ATAA-TAA
1 ATAACTAC
13331647 ATAACTAAC
1 ATAACT-AC
*
13331656 ATAAAATAC
1 AT-AACTAC
*
13331665 A-AATTAC
1 ATAACTAC
*
13331672 ATAGCTTAC
1 ATAAC-TAC
*
13331681 ATAA-TAT
1 ATAACTAC
*
13331688 GTAACTTAC
1 ATAAC-TAC
*
13331697 ATAACTTAT
1 ATAAC-TAC
13331706 ATAA-TAC
1 ATAACTAC
13331713 ATAA
1 ATAA
13331717 ATTTCCAGGC
Statistics
Matches: 140, Mismatches: 30, Indels: 34
0.69 0.15 0.17
Matches are distributed among these distances:
7 44 0.31
8 6 0.04
9 86 0.61
10 4 0.03
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (8 bp):
ATAACTAC
Found at i:13331623 original size:66 final size:65
Alignment explanation
Indices: 13331536--13331716 Score: 195
Period size: 66 Copynumber: 2.7 Consensus size: 65
13331526 CTCACATAAC
** * * *
13331536 TTACATAGCTTACATTCTACACAACTTACATGACATACATAATACATAACTGACAT-AACTAACA
1 TTACATAGCTTACATAATACACAACTTACAT-ACTTACATAATACATAACTAACATAAAAT-ACA
13331600 TAA
64 -AA
* * *
13331603 -TGCATAGTTTACATAATACACAACTTACATAGCTTACATAATAAATAACTAACATAAAATACAA
1 TTACATAGCTTACATAATACACAACTTACATA-CTTACATAATACATAACTAACATAAAATACAA
13331667 A
65 A
*** *
13331668 TTACATAGCTTACATAATATGTAACTTACATAACTTATATAATACATAA
1 TTACATAGCTTACATAATACACAACTTACAT-ACTTACATAATACATAA
13331717 ATTTCCAGGC
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
65 3 0.03
66 88 0.93
67 4 0.04
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.30
Consensus pattern (65 bp):
TTACATAGCTTACATAATACACAACTTACATACTTACATAATACATAACTAACATAAAATACAAA
Found at i:13331630 original size:16 final size:16
Alignment explanation
Indices: 13331522--13331700 Score: 71
Period size: 16 Copynumber: 10.8 Consensus size: 16
13331512 TAACTTATAT
*
13331522 ATAACTCACATAACTTAC
1 ATAACTTACATAA--TAC
* **
13331540 ATAGCTTACATTCTAC
1 ATAACTTACATAATAC
*
13331556 ACAACTTACATGACATAC
1 ATAACTTACAT-A-ATAC
13331574 ATAA--TACATAACTGAC
1 ATAACTTACATAA-T-AC
* *
13331590 ATAACTAACATAATGC
1 ATAACTTACATAATAC
**
13331606 ATAGTTTACATAATAC
1 ATAACTTACATAATAC
* *
13331622 ACAACTTACATAGCTTAC
1 ATAACTTACATA--ATAC
*
13331640 ATAA--TAAATAACTAAC
1 ATAACTTACATAA-T-AC
**
13331656 ATAAAATACA-AATTAC
1 ATAACTTACATAA-TAC
* *
13331672 ATAGCTTACATAATAT
1 ATAACTTACATAATAC
*
13331688 GTAACTTACATAA
1 ATAACTTACATAA
13331701 CTTATATAAT
Statistics
Matches: 118, Mismatches: 30, Indels: 28
0.67 0.17 0.16
Matches are distributed among these distances:
14 1 0.01
15 3 0.03
16 78 0.66
17 6 0.05
18 30 0.25
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (16 bp):
ATAACTTACATAATAC
Found at i:13331652 original size:25 final size:25
Alignment explanation
Indices: 13331605--13331658 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
13331595 TAACATAATG
* * *
13331605 CATAGTTTACATAATACACAACTTA
1 CATAGCTTACATAATAAACAACTAA
*
13331630 CATAGCTTACATAATAAATAACTAA
1 CATAGCTTACATAATAAACAACTAA
13331655 CATA
1 CATA
13331659 AAATACAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.19, G:0.04, T:0.30
Consensus pattern (25 bp):
CATAGCTTACATAATAAACAACTAA
Found at i:13331658 original size:41 final size:41
Alignment explanation
Indices: 13331571--13331700 Score: 134
Period size: 41 Copynumber: 3.2 Consensus size: 41
13331561 TTACATGACA
* * * * ** **
13331571 TACATAATACATAACTGACATAACTAACATAATGCATAGTT
1 TACATAATACACAACTTACATAGCTTACATAATAAATAACT
13331612 TACATAATACACAACTTACATAGCTTACATAATAAATAACT
1 TACATAATACACAACTTACATAGCTTACATAATAAATAACT
* * * * **
13331653 AACATAAAATACAAATTACATAGCTTACATAATATGTAACT
1 TACATAATACACAACTTACATAGCTTACATAATAAATAACT
13331694 TACATAA
1 TACATAA
13331701 CTTATATAAT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (41 bp):
TACATAATACACAACTTACATAGCTTACATAATAAATAACT
Found at i:13331658 original size:116 final size:116
Alignment explanation
Indices: 13331431--13331658 Score: 268
Period size: 116 Copynumber: 2.0 Consensus size: 116
13331421 TACGTAACTG
*
13331431 ACATTCTACACAACTTACAAAACATACATAATACATAACTGGCATAACTAACATAATACATAGCT
1 ACATTCTACACAACTTACAAAACATACATAATACATAACTGACATAACTAACATAATACATAGCT
** * * * *
13331496 TATATAATTATTAAGATAACTTATATATAACTCACATAACTTACATAGCTT
66 TATATAACAATTAACATAACTTATACATAACTCAAATAACTAACATAGCTT
** * *
13331547 ACATTCTACACAACTTACATGACATACATAATACATAACTGACATAACTAACATAATGCATAGTT
1 ACATTCTACACAACTTACAAAACATACATAATACATAACTGACATAACTAACATAATACATAGCT
*
13331612 TACATAATACACAACTT-ACATAGC-T-TACATAA-T-AAATAACTAACATA
66 T--AT-ATA-ACAA-TTAACATAACTTATACATAACTCAAATAACTAACATA
13331659 AAATACAAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
116 73 0.77
117 1 0.01
118 8 0.08
119 4 0.04
120 7 0.07
121 2 0.02
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.29
Consensus pattern (116 bp):
ACATTCTACACAACTTACAAAACATACATAATACATAACTGACATAACTAACATAATACATAGCT
TATATAACAATTAACATAACTTATACATAACTCAAATAACTAACATAGCTT
Found at i:13337209 original size:66 final size:66
Alignment explanation
Indices: 13337095--13337261 Score: 192
Period size: 66 Copynumber: 2.5 Consensus size: 66
13337085 ATTACACAAA
* * * * *
13337095 TTAAAGCGGAGGCAGCATCGAGAGAAGTTGAGGTTCAAAAAAGATATGAAGAACTCGAGCTAAAA
1 TTAAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGCTCAAAAAAGATATGAAGAACTCCAGCTAAAA
13337160 C
66 C
* * * * *
13337161 TTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGCTCAAAGAAGGTATGAAGAACTCCAGCTACAG
1 TTAAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGCTCAAAAAAGATATGAAGAACTCCAGCTAAAA
13337226 C
66 C
* * * *
13337227 TTAAAGCAAAGGCTGCAACGAGGGAAG-TAGAGGCT
1 TTAAAGCAGAGGCAGCAGCGAGAGAAGCT-GAGGCT
13337262 ACAGCGAAGG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
65 1 0.01
66 84 0.99
ACGTcount: A:0.40, C:0.16, G:0.29, T:0.15
Consensus pattern (66 bp):
TTAAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGCTCAAAAAAGATATGAAGAACTCCAGCTAAAA
C
Found at i:13337662 original size:43 final size:43
Alignment explanation
Indices: 13337615--13337804 Score: 123
Period size: 43 Copynumber: 4.4 Consensus size: 43
13337605 GGCGTTTTAA
* * *
13337615 AAAAATGTCGCTAAAGGTAAGGGTCTTTTGCGGCATTTGTGGG
1 AAAAATGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGTGGG
* * *
13337658 AAAAATGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTTTGG
1 AAAAATGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTG-TGGG
* ** * * ** **
13337702 -CAAGCGCCGCTAAAGACCATGGACCTTTAGCGGTGTTTGTGGG
1 AAAAATGCCGCTAAAGA-TAAGGGTCTTTAGCGGCATTTGTGGG
** * * * * * *
13337745 AAAAACACCACAAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTG
1 AAAAATGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGTGG-G
*
13337789 -AAAGTGCCGCTAAAGA
1 AAAAATGCCGCTAAAGA
13337805 CCATGACCTT
Statistics
Matches: 108, Mismatches: 35, Indels: 8
0.72 0.23 0.05
Matches are distributed among these distances:
43 78 0.72
44 30 0.28
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (43 bp):
AAAAATGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGTGGG
Found at i:13337816 original size:43 final size:43
Alignment explanation
Indices: 13337664--13337911 Score: 250
Period size: 43 Copynumber: 5.7 Consensus size: 43
13337654 TGGGAAAAAT
* * * *
13337664 GCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGT-TTGGCAAGC
1 GCCGCTAAAGATCATGGCCTTTAGCGGCGTTTGTGGT-GAAAGC
* * *
13337707 GCCGCTAAAGACCATGGACCTTTAGCGGTGTTTGTGG-GAAAAAC
1 GCCGCTAAAGATCATGG-CCTTTAGCGGCGTTTGTGGTG-AAAGC
* * * * * *
13337751 ACCACAAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTGAAAGT
1 GCCGCTAAAGATCATGGCCTTTAGCGGCGTTTGTGGTGAAAGC
* * *
13337794 GCCGCTAAAGACCATGACCTTTAGTGGCGTTTGTGGTGAAAGC
1 GCCGCTAAAGATCATGGCCTTTAGCGGCGTTTGTGGTGAAAGC
* *
13337837 GCCGCTAAAGGTCATGGCCTTTAGCGGTGTTTGTGGT-AATAGC
1 GCCGCTAAAGATCATGGCCTTTAGCGGCGTTTGTGGTGAA-AGC
* * *
13337880 GCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
1 GCCGCTAAAGATCATGGCCTTTAGCGGCGTTT
13337912 TTTCTAAAAA
Statistics
Matches: 167, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
42 2 0.01
43 134 0.80
44 31 0.19
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (43 bp):
GCCGCTAAAGATCATGGCCTTTAGCGGCGTTTGTGGTGAAAGC
Found at i:13337853 original size:130 final size:129
Alignment explanation
Indices: 13337627--13337911 Score: 340
Period size: 130 Copynumber: 2.2 Consensus size: 129
13337617 AAATGTCGCT
* * * * * **
13337627 AAAGGTAAGGGTCTTTTGCGGCATTTGTGGGAAAAATGCCGCTAAAGATCAGGGTCTTTAGCGGC
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAATGCCGCTAAAGACCAGGACCTTTAGCGGC
* *
13337692 GTTTGTTTGGCAAGCGCCGCTAAAGACCATGGACCTTTAGCGGTGTTTGTGGGAAAAACACCACA
66 GTTTGTGTGGAAAGCGCCGCTAAAGACCATGG-CCTTTAGCGGTGTTTGTGGGAAAAACACCACA
* * *
13337757 AAAGGTCATGGTCTTTAGCGGCGTTTGTGGTG-AAAGTGCCGCTAAAGACCATGACCTTTAGTGG
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTGG-GAAAAATGCCGCTAAAGACCAGGACCTTTAGCGG
** * * * * *
13337821 CGTTTGTG-GTGAAAGCGCCGCTAAAGGTCATGGCCTTTAGCGGTGTTTGTGGTAATAGCGCCGC
65 CGTTTGTGTG-GAAAGCGCCGCTAAAGACCATGGCCTTTAGCGGTGTTTGTGGGAAAAACACCAC
*
13337885 T
129 A
*
13337886 AAAGGTCTTGGTCTTTAGCGGCGTTT
1 AAAGGTCATGGTCTTTAGCGGCGTTT
13337912 TTTCTAAAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
129 52 0.39
130 79 0.60
131 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (129 bp):
AAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAATGCCGCTAAAGACCAGGACCTTTAGCGGC
GTTTGTGTGGAAAGCGCCGCTAAAGACCATGGCCTTTAGCGGTGTTTGTGGGAAAAACACCACA
Found at i:13337861 original size:86 final size:87
Alignment explanation
Indices: 13337639--13337911 Score: 304
Period size: 86 Copynumber: 3.2 Consensus size: 87
13337629 AGGTAAGGGT
* * * * * * *
13337639 CTTTTGCGGCATTTGTGGGAAAAATGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGT-TTGGC
1 CTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT-GA
13337703 AAGCGCCGCTAAAGACCATGGAC
65 AAGCGCCGCTAAAGACCATGGAC
* * * *
13337726 CTTTAGCGGTGTTTGTGGGAAAAACACCACAAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTGAA
1 CTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTGAA
*
13337791 AGTGCCGCTAAAGACCAT-GAC
66 AGCGCCGCTAAAGACCATGGAC
* * * *
13337812 CTTTAGTGGCGTTTGTGGTG-AAAGCGCCGCTAAAGGTCATGGCCTTTAGCGGTGTTTGTGGT-A
1 CTTTAGCGGCGTTTGTGG-GAAAAACGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTGA
** * *
13337875 ATAGCGCCGCTAAAGGTCTTGG-T
65 A-AGCGCCGCTAAAGACCATGGAC
13337898 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
13337912 TTTCTAAAAA
Statistics
Matches: 156, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
85 2 0.01
86 82 0.53
87 71 0.46
88 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.29
Consensus pattern (87 bp):
CTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTGAA
AGCGCCGCTAAAGACCATGGAC
Found at i:13341327 original size:21 final size:21
Alignment explanation
Indices: 13341301--13341355 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
13341291 TCTAAAAATA
*
13341301 TACAGCTGAAGATTTCTGTGG
1 TACAGCTGAAGATTTCTGCGG
13341322 TACAGCTGAAGATTTCTGCGG
1 TACAGCTGAAGATTTCTGCGG
* *
13341343 TATAGCCGAAGAT
1 TACAGCTGAAGAT
13341356 GATCTAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (21 bp):
TACAGCTGAAGATTTCTGCGG
Found at i:13348904 original size:26 final size:26
Alignment explanation
Indices: 13348873--13348935 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
13348863 TCTGACCCAC
13348873 AGCTCGTGTGAACAGCCCATTTTTGT
1 AGCTCGTGTGAACAGCCCATTTTTGT
13348899 AGCTCGTGTGAACAGCCCATTTTTGT
1 AGCTCGTGTGAACAGCCCATTTTTGT
13348925 AGCTCGTGTGA
1 AGCTCGTGTGA
13348936 GCATACTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.33
Consensus pattern (26 bp):
AGCTCGTGTGAACAGCCCATTTTTGT
Found at i:13352289 original size:21 final size:21
Alignment explanation
Indices: 13352265--13352304 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13352255 TCAGCACTCT
13352265 CAGATACATCCACAACAAAGC
1 CAGATACATCCACAACAAAGC
* *
13352286 CAGATGCATCCACACCAAA
1 CAGATACATCCACAACAAA
13352305 ATCAAACGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.35, G:0.10, T:0.10
Consensus pattern (21 bp):
CAGATACATCCACAACAAAGC
Found at i:13362754 original size:15 final size:16
Alignment explanation
Indices: 13362729--13362761 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
13362719 TAGATTAAAA
*
13362729 AATAGAAATAACATTT
1 AATAGAAATAAAATTT
13362745 AATA-AAATAAAATTT
1 AATAGAAATAAAATTT
13362760 AA
1 AA
13362762 CCTAGAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (16 bp):
AATAGAAATAAAATTT
Found at i:13370139 original size:37 final size:37
Alignment explanation
Indices: 13370089--13370203 Score: 167
Period size: 37 Copynumber: 3.1 Consensus size: 37
13370079 TGTCGAGGTG
* * * *
13370089 TGTTATCAATTGGATTAGCTCTCTTTAGCGTTTGGCG
1 TGTTATCGATTGGATTAGCTCTCATGAGCGTTTGGCA
* *
13370126 TGTTATCGGTTGGATTAGCTCTCATGAGCATTTGGCA
1 TGTTATCGATTGGATTAGCTCTCATGAGCGTTTGGCA
*
13370163 TGTTATCGATTGGATTAGCTCTCATGAGTGTTTGGCA
1 TGTTATCGATTGGATTAGCTCTCATGAGCGTTTGGCA
13370200 TGTT
1 TGTT
13370204 TTGGTTGGTT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.17, C:0.15, G:0.26, T:0.42
Consensus pattern (37 bp):
TGTTATCGATTGGATTAGCTCTCATGAGCGTTTGGCA
Found at i:13387423 original size:13 final size:13
Alignment explanation
Indices: 13387405--13387464 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
13387395 TCTGACACTT
*
13387405 TGTTTTGAAGATA
1 TGTTTTAAAGATA
* *
13387418 TGTTTTCAAGTTA
1 TGTTTTAAAGATA
* *
13387431 AGTTTTTAAA-CTA
1 TG-TTTTAAAGATA
13387444 TGTTTTAAAAGATA
1 TGTTTT-AAAGATA
13387458 TGTTTTA
1 TGTTTTA
13387465 TGTGTGCTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
12 4 0.11
13 19 0.51
14 14 0.38
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.50
Consensus pattern (13 bp):
TGTTTTAAAGATA
Found at i:13387519 original size:14 final size:13
Alignment explanation
Indices: 13387485--13387532 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 13
13387475 TAAGCGAGCC
*
13387485 TATGTTTT-CAAG
1 TATGTTTTATAAG
13387497 TATGTTTTATAAG
1 TATGTTTTATAAG
13387510 TATAGTTTTATAAG
1 TAT-GTTTTATAAG
13387524 CTATGTTTT
1 -TATGTTTT
13387533 TGCGATCTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 8 0.25
13 6 0.19
14 15 0.47
15 3 0.09
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (13 bp):
TATGTTTTATAAG
Found at i:13388234 original size:17 final size:17
Alignment explanation
Indices: 13388212--13388250 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
13388202 TGGCAATGGA
13388212 GAGGTAGATGAA-TTGGC
1 GAGGTAGAT-AACTTGGC
13388229 GAGGTAGATAACTTGGC
1 GAGGTAGATAACTTGGC
13388246 GAGGT
1 GAGGT
13388251 TCATCCCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.28, C:0.08, G:0.41, T:0.23
Consensus pattern (17 bp):
GAGGTAGATAACTTGGC
Found at i:13392861 original size:29 final size:29
Alignment explanation
Indices: 13392819--13392917 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
13392809 GAGTCAACTG
13392819 CTATAAACTAATAGACAACATAATACTCC
1 CTATAAACTAATAGACAACATAATACTCC
** **
13392848 CTATAAACTAATAGACAATGT-ATTTTCC
1 CTATAAACTAATAGACAACATAATACTCC
* **
13392876 CAATTGGACTAATAGACAACATAATACTCC
1 CTA-TAAACTAATAGACAACATAATACTCC
13392906 CTATAAACTAAT
1 CTATAAACTAAT
13392918 TGCTCAATTT
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
28 7 0.13
29 40 0.74
30 7 0.13
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.28
Consensus pattern (29 bp):
CTATAAACTAATAGACAACATAATACTCC
Found at i:13393406 original size:28 final size:28
Alignment explanation
Indices: 13393366--13393424 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
13393356 CTAAATTAAG
13393366 ATGGAGGTTTGTGATGGTATTTTACCAA
1 ATGGAGGTTTGTGATGGTATTTTACCAA
13393394 ATGGAGGTTTGTGATGGTATTTTACCAA
1 ATGGAGGTTTGTGATGGTATTTTACCAA
13393422 ATG
1 ATG
13393425 AATGGCTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.29, T:0.39
Consensus pattern (28 bp):
ATGGAGGTTTGTGATGGTATTTTACCAA
Found at i:13394386 original size:26 final size:26
Alignment explanation
Indices: 13394355--13394407 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13394345 TTTTAAATAC
13394355 TTAAACAATTATATGCACGAGACCAG
1 TTAAACAATTATATGCACGAGACCAG
13394381 TTAAACAATTATATGCACGAGACCAG
1 TTAAACAATTATATGCACGAGACCAG
13394407 T
1 T
13394408 ACAAACCCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (26 bp):
TTAAACAATTATATGCACGAGACCAG
Found at i:13395764 original size:20 final size:20
Alignment explanation
Indices: 13395741--13395793 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
13395731 ATTGGATTAA
* *
13395741 AATCAAATCAAATTTATTGG
1 AATCAAATAAAATTGATTGG
13395761 AATCAAATAAAATTGATTGG
1 AATCAAATAAAATTGATTGG
13395781 AATCAAATAAAAT
1 AATCAAATAAAAT
13395794 CAGGATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.53, C:0.08, G:0.09, T:0.30
Consensus pattern (20 bp):
AATCAAATAAAATTGATTGG
Found at i:13395768 original size:25 final size:24
Alignment explanation
Indices: 13395731--13395791 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 24
13395721 AATTAAATCA
* * *
13395731 ATTGGATTAAAATCAAATCAAATTT
1 ATTGGAATCAAAT-AAATCAAATTG
13395756 ATTGGAATCAAAT--A--AAATTG
1 ATTGGAATCAAATAAATCAAATTG
13395776 ATTGGAATCAAATAAA
1 ATTGGAATCAAATAAA
13395792 ATCAGGATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 18 0.58
22 2 0.06
25 11 0.35
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (24 bp):
ATTGGAATCAAATAAATCAAATTG
Found at i:13398712 original size:82 final size:81
Alignment explanation
Indices: 13398608--13398912 Score: 249
Period size: 81 Copynumber: 3.7 Consensus size: 81
13398598 TGTTTCGAAA
* * *
13398608 CAAAATCAAAATAAAATTTGTTAAATGAC-GGAATAAATC-CTGAAACAGAATTATTTAATTAAT
1 CAAAATC-AAATAAAATCTGTTAAACGACGGGAATAAATCTC-GAAACAG-ATTATTCAATTAAT
13398671 TCTTCATTTGGAAATAAAAT
63 TC-TCATTTGGAAATAAAAT
* *
13398691 CAAAATCAAATAAAATCTGTTAAACGGCGGGAATAAATCTCGAAACAGATTATTCAATTATTTCT
1 CAAAATCAAATAAAATCTGTTAAACGACGGGAATAAATCTCGAAACAGATTATTCAATTAATTCT
*
13398756 CATTTGGAAATAATAT
66 CATTTGGAAATAAAAT
*** ** * ** * * * *
13398772 CAAAAAGGAATAAAATCTGTCGAACGGCTAGACTAAATCCCAAAACAAATTATTCATTATTCAAT
1 CAAAATCAAATAAAATCTGTTAAACGACGGGAATAAATCTCGAAACAGATTATTCA--ATT--A-
*
13398837 TATTTCTCATTTGGAAACAAAAT
61 -A-TTCTCATTTGGAAATAAAAT
* * * * *
13398860 TAGAAT-AGAATAAAATTTGTTAAACGACAGGATTAAATC-CTGAAACAGATTAT
1 CAAAATCA-AATAAAATCTGTTAAACGACGGGAATAAATCTC-GAAACAGATTAT
13398913 CAAATTATTA
Statistics
Matches: 178, Mismatches: 33, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
81 61 0.34
82 32 0.18
83 27 0.15
84 1 0.01
85 1 0.01
87 1 0.01
88 55 0.31
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (81 bp):
CAAAATCAAATAAAATCTGTTAAACGACGGGAATAAATCTCGAAACAGATTATTCAATTAATTCT
CATTTGGAAATAAAAT
Found at i:13398785 original size:81 final size:79
Alignment explanation
Indices: 13398617--13398921 Score: 256
Period size: 88 Copynumber: 3.7 Consensus size: 79
13398607 ACAAAATCAA
* * * *
13398617 AATAAAATTTGTTAAATGACGGAATAAATCCTGAAACAGAATTATTTAATTAATTCTTCATTTGG
1 AATAAAATCTGTTAAACGACGGAATAAATCCTGAAACAG-ATTATTCAATTATTTC-TCATTTGG
13398682 AAATAAAATCAAAATCA-
64 AAATAAAATCAAAA--AG
*
13398699 AATAAAATCTGTTAAACGGCGGGAATAAAT-CTCGAAACAGATTATTCAATTATTTCTCATTTGG
1 AATAAAATCTGTTAAACGAC-GGAATAAATCCT-GAAACAGATTATTCAATTATTTCTCATTTGG
*
13398763 AAATAATATCAAAAAGG
64 AAATAAAATCAAAAA-G
** * * * ** *
13398780 AATAAAATCTGTCGAACGGCTAGACTAAATCCCAAAACAAATTATTCATTATTCAATTATTTCTC
1 AATAAAATCTGTTAAACGAC-GGAATAAATCCTGAAAC-----A--GATTATTCAATTATTTCTC
* * *
13398845 ATTTGGAAACAAAATTAGAATAG
58 ATTTGGAAATAAAATCA-AAAAG
* *
13398868 AATAAAATTTGTTAAACGACAGGATTAAATCCTGAAACAGATTA-TCAAATTATT
1 AATAAAATCTGTTAAACGAC-GGAATAAATCCTGAAACAGATTATTC-AATTATT
13398922 AATTTTTATT
Statistics
Matches: 181, Mismatches: 28, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
79 1 0.01
80 2 0.01
81 61 0.34
82 34 0.19
83 17 0.09
86 1 0.01
88 62 0.34
89 3 0.02
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.31
Consensus pattern (79 bp):
AATAAAATCTGTTAAACGACGGAATAAATCCTGAAACAGATTATTCAATTATTTCTCATTTGGAA
ATAAAATCAAAAAG
Found at i:13401329 original size:50 final size:50
Alignment explanation
Indices: 13401271--13401371 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
13401261 TTTAAATGTG
*
13401271 AAAATGTTAAATATTTCATGAAATTTAATTTGAGATTTCATTGGCATAAT
1 AAAATGTTAAATACTTCATGAAATTTAATTTGAGATTTCATTGGCATAAT
*
13401321 AAAATGTTAAATACTTCATGGAATTTAATTTGAGATTTCATTGGCATAAT
1 AAAATGTTAAATACTTCATGAAATTTAATTTGAGATTTCATTGGCATAAT
13401371 A
1 A
13401372 TTGAATCTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.41
Consensus pattern (50 bp):
AAAATGTTAAATACTTCATGAAATTTAATTTGAGATTTCATTGGCATAAT
Found at i:13404174 original size:43 final size:43
Alignment explanation
Indices: 13404125--13404219 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
13404115 TTTTATAAAT
* *
13404125 AAACGCCGCTAAAGACCAAGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAAACCAAGACCTTTAGCGACACTTTTCCCAC
* *
13404168 AAACGCCGCTAAAAACCAAGACCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTAAAAACCAAGACCTTTAGCGACACTTTTCCCAC
*
13404211 AAACACCGC
1 AAACGCCGC
13404220 CACTTTTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.33, C:0.35, G:0.15, T:0.18
Consensus pattern (43 bp):
AAACGCCGCTAAAAACCAAGACCTTTAGCGACACTTTTCCCAC
Found at i:13406153 original size:10 final size:10
Alignment explanation
Indices: 13406138--13406168 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
13406128 CTAATAATGT
13406138 AAGTTAAGCA
1 AAGTTAAGCA
13406148 AAGTTAAGCA
1 AAGTTAAGCA
*
13406158 AAGTCAAGCA
1 AAGTTAAGCA
13406168 A
1 A
13406169 GTCCACCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.16
Consensus pattern (10 bp):
AAGTTAAGCA
Found at i:13406858 original size:12 final size:12
Alignment explanation
Indices: 13406841--13406879 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
13406831 ATTATAAAAG
13406841 AGTCTACAAACC
1 AGTCTACAAACC
13406853 AGTCTACAAACC
1 AGTCTACAAACC
*
13406865 AGTCTACAATCC
1 AGTCTACAAACC
13406877 AGT
1 AGT
13406880 TTAAGCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.38, C:0.31, G:0.10, T:0.21
Consensus pattern (12 bp):
AGTCTACAAACC
Found at i:13408457 original size:28 final size:31
Alignment explanation
Indices: 13408403--13408460 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
13408393 TAAACTAATA
*
13408403 TTTAAATATATCAAATGGTTTAGATTAATTTT
1 TTTAAATATA-CAAATGCTTTAGATTAATTTT
13408435 TTTAAATATA-AAA-GCTTTA-ATTAATT
1 TTTAAATATACAAATGCTTTAGATTAATT
13408461 GTATAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 7 0.28
29 5 0.20
30 3 0.12
32 10 0.40
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (31 bp):
TTTAAATATACAAATGCTTTAGATTAATTTT
Found at i:13408735 original size:14 final size:14
Alignment explanation
Indices: 13408709--13408773 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
13408699 ATCCTTAAAC
13408709 CTTAAATCCCTAACT
1 CTTAAA-CCCTAACT
13408724 CTTAAACCCTAACAT
1 CTTAAACCCTAAC-T
*
13408739 C-TAACCCCTAAAC-
1 CTTAAACCCT-AACT
*
13408752 CTTAAATCCC-AACC
1 CTTAAA-CCCTAACT
13408766 CTTAAACC
1 CTTAAACC
13408774 ATAATCGCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
13 6 0.14
14 23 0.53
15 14 0.33
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (14 bp):
CTTAAACCCTAACT
Found at i:13408765 original size:21 final size:21
Alignment explanation
Indices: 13408704--13408821 Score: 71
Period size: 21 Copynumber: 5.5 Consensus size: 21
13408694 CCTGAATCCT
* *
13408704 TAAACCTTAAATCCCTAACTCT
1 TAAACCTTAAATCCC-AACCCC
* *
13408726 TAAACCCTAACAT-CTAACCCC
1 TAAACCTTAA-ATCCCAACCCC
*
13408747 TAAACCTTAAATCCCAACCCT
1 TAAACCTTAAATCCCAACCCC
* * * *
13408768 TAAACCAT-AATCGCTAATCCA
1 TAAACCTTAAATC-CCAACCCC
* *
13408789 TAATCCCTAAAT-CCATACTCCC
1 TAAACCTTAAATCCCA-AC-CCC
13408811 TAAACCTTAAA
1 TAAACCTTAAA
13408822 ATATGAACTC
Statistics
Matches: 72, Mismatches: 18, Indels: 12
0.71 0.18 0.12
Matches are distributed among these distances:
20 8 0.11
21 38 0.53
22 24 0.33
23 2 0.03
ACGTcount: A:0.39, C:0.35, G:0.01, T:0.25
Consensus pattern (21 bp):
TAAACCTTAAATCCCAACCCC
Found at i:13408803 original size:15 final size:15
Alignment explanation
Indices: 13408768--13408814 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
13408758 TCCCAACCCT
*
13408768 TAAA-CCATAATCGC
1 TAAATCCATAATCCC
13408782 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
13408796 TAAATCCATACTCCC
1 TAAATCCATAATCCC
13408811 TAAA
1 TAAA
13408815 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 16 0.55
ACGTcount: A:0.40, C:0.32, G:0.02, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:13409036 original size:15 final size:15
Alignment explanation
Indices: 13408998--13409059 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
13408988 ATCCCTAACT
*
13408998 TTTAACCCCTAACACG
1 TTTAACCCCTAAC-CC
*
13409014 TCTAACCCCTAACCC
1 TTTAACCCCTAACCC
*
13409029 TTTAACCCCTAAACC
1 TTTAACCCCTAACCC
**
13409044 -TTAAATCCTAACCC
1 TTTAACCCCTAACCC
13409058 TT
1 TT
13409060 AAACTATAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 11 0.29
15 15 0.39
16 12 0.32
ACGTcount: A:0.31, C:0.40, G:0.02, T:0.27
Consensus pattern (15 bp):
TTTAACCCCTAACCC
Found at i:13409076 original size:14 final size:14
Alignment explanation
Indices: 13409059--13409110 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
13409049 TCCTAACCCT
*
13409059 TAAACTATAATCAC
1 TAAACTATAATCCC
* *
13409073 TAAACCCATACTCCC
1 TAAA-CTATAATCCC
* *
13409088 TAAACTAAAAACCC
1 TAAACTATAATCCC
13409102 TAAACTATA
1 TAAACTATA
13409111 GTGATAATTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACTATAATCCC
Found at i:13409457 original size:41 final size:41
Alignment explanation
Indices: 13409398--13409492 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
13409388 CTTGTTCAAA
* *
13409398 GCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAAC
1 GCCGCTAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAAAC
*
13409439 GCCGCTAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAACC
1 GCCGCTAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAAAC
13409480 GCCGCTAAAGACC
1 GCCGCTAAAGACC
13409493 CATGACGTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (41 bp):
GCCGCTAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAAAC
Found at i:13409630 original size:40 final size:40
Alignment explanation
Indices: 13409566--13409641 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
13409556 TTTTCGGAAA
*
13409566 AGCGCCGCTAATACTCGATCTTTAGCGGCGTTTTTTAGAT
1 AGCGCCGCTAATACTCGATCTTTAGCAGCGTTTTTTAGAT
* * *
13409606 AGCGCCGCTAATGA-TTGATTTTTAGCAGTGTTTTTT
1 AGCGCCGCTAAT-ACTCGATCTTTAGCAGCGTTTTTT
13409642 TATCCAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.97
41 1 0.03
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.39
Consensus pattern (40 bp):
AGCGCCGCTAATACTCGATCTTTAGCAGCGTTTTTTAGAT
Found at i:13410799 original size:65 final size:65
Alignment explanation
Indices: 13410718--13410867 Score: 282
Period size: 65 Copynumber: 2.3 Consensus size: 65
13410708 AATCTATGTG
13410718 ATTTTTGGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGA
1 ATTTTT-GGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGA
13410783 T
65 T
13410784 ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
1 ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
*
13410849 ATTTTTGAAAATTAATTTT
1 ATTTTTGGAAATTAATTTT
13410868 CAAGTCAGAC
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
65 77 0.93
66 6 0.07
ACGTcount: A:0.45, C:0.01, G:0.08, T:0.46
Consensus pattern (65 bp):
ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
Found at i:13411023 original size:15 final size:15
Alignment explanation
Indices: 13411003--13411033 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13410993 CTGGTGCCAG
13411003 CAATAGTTGAACCGA
1 CAATAGTTGAACCGA
13411018 CAATAGTTGAACCGA
1 CAATAGTTGAACCGA
13411033 C
1 C
13411034 TCGAGGTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (15 bp):
CAATAGTTGAACCGA
Found at i:13411370 original size:61 final size:58
Alignment explanation
Indices: 13411305--13411416 Score: 170
Period size: 61 Copynumber: 1.9 Consensus size: 58
13411295 GTTATTGTAA
* * *
13411305 TATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATAGATTTAT
1 TATTAAATTTAATCTAATATTTATCTTGT---TAAGTATTATATTAATATAATAGATTTAT
13411366 TATTAAATTTAATCTAATATTTATCTTGTTAAGTATTATATTAATATAATA
1 TATTAAATTTAATCTAATATTTATCTTGTTAAGTATTATATTAATATAATA
13411417 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
58 20 0.42
61 28 0.58
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.52
Consensus pattern (58 bp):
TATTAAATTTAATCTAATATTTATCTTGTTAAGTATTATATTAATATAATAGATTTAT
Found at i:13411429 original size:58 final size:58
Alignment explanation
Indices: 13411302--13411437 Score: 152
Period size: 58 Copynumber: 2.3 Consensus size: 58
13411292 GTGGTTATTG
* * *
13411302 TAAT-ATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATAGAT
1 TAATGATTAAATTTAATCTAATATTTATCTTGT--ATAAGTATTATATTAATATAATA-AT
* *
13411362 TTATTATTAAATTTAATCTAATATTTATCTTGT-TAAGTATTATATTAATATAAT-AT
1 TAATGATTAAATTTAATCTAATATTTATCTTGTATAAGTATTATATTAATATAATAAT
*
13411418 TAAAGTGATTAAGTTTAATC
1 T-AA-TGATTAAATTTAATC
13411438 ATAGTTGATC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
56 3 0.05
57 1 0.02
58 32 0.48
60 3 0.05
61 27 0.41
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.50
Consensus pattern (58 bp):
TAATGATTAAATTTAATCTAATATTTATCTTGTATAAGTATTATATTAATATAATAAT
Found at i:13412546 original size:13 final size:13
Alignment explanation
Indices: 13412528--13412552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13412518 TATTTTAATA
13412528 TTATTTTGTGTGT
1 TTATTTTGTGTGT
13412541 TTATTTTGTGTG
1 TTATTTTGTGTG
13412553 CATTCGATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:13413815 original size:41 final size:41
Alignment explanation
Indices: 13413608--13413804 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
13413598 TTTATCGTTA
* * * *
13413608 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
13413649 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGTTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
13413690 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
13413731 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
13413772 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
13413805 AAGAGCCGGT
Statistics
Matches: 146, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 141 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:13414077 original size:33 final size:32
Alignment explanation
Indices: 13414021--13414084 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
13414011 AGATATGTAT
13414021 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
13414053 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
13414085 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:13414101 original size:33 final size:33
Alignment explanation
Indices: 13414028--13414101 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
13414018 TATATATATA
* * **
13414028 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
13414060 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
13414093 TGTATGTAT
1 TATATGTAT
13414102 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:13419746 original size:13 final size:13
Alignment explanation
Indices: 13419728--13419752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13419718 TATTTTAATA
13419728 TTATTTTGTGTGT
1 TTATTTTGTGTGT
13419741 TTATTTTGTGTG
1 TTATTTTGTGTG
13419753 CATTCGATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:13420852 original size:41 final size:43
Alignment explanation
Indices: 13420789--13420886 Score: 148
Period size: 41 Copynumber: 2.3 Consensus size: 43
13420779 ATCGTTAGTG
* * *
13420789 ACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGA-
1 ACATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
13420831 A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
1 ACATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
13420873 ACATT-TTCAGACTA
1 ACATTATTCAGACTA
13420887 AATTAATTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
41 37 0.73
42 11 0.22
43 3 0.06
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (43 bp):
ACATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
Found at i:13422367 original size:40 final size:39
Alignment explanation
Indices: 13422260--13422529 Score: 325
Period size: 40 Copynumber: 6.8 Consensus size: 39
13422250 ACACGTCACC
* * * * *
13422260 AGCATGATTGCTCTTACGGGATTTAGCACGGAT-TATCACT
1 AGCATGAATGCTCTT-C-GGACTTAGCCCGGATACATCGCT
*
13422300 -GCACGAATGCTCTTTCGGAACTTAGCCCGGATACATCGCT
1 AGCATGAATGCTC-TTCGG-ACTTAGCCCGGATACATCGCT
13422340 AGCATGAAATGCTCTTCGGACTTAGCCCGGATACATCGCT
1 AGCATG-AATGCTCTTCGGACTTAGCCCGGATACATCGCT
* *
13422380 AGCA-GAATGCTCTTCGGAACTTAGCCTGGATACATCACT
1 AGCATGAATGCTCTTCGG-ACTTAGCCCGGATACATCGCT
* *
13422419 AGCATGAATGCTCTTCGGGACTTAGCCCGAATACATCACT
1 AGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCGCT
13422459 AGCATGAATGCTCTTCGGGACTTAGCCCGGATAC-TCGCT
1 AGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCGCT
13422498 AGCATGAATGCTCTTGCGGAC-TAGCCCCGGAT
1 AGCATGAATGCTCTT-CGGACTTAG-CCCGGAT
13422530 TTAGTACTCG
Statistics
Matches: 207, Mismatches: 13, Indels: 21
0.86 0.05 0.09
Matches are distributed among these distances:
38 17 0.08
39 76 0.37
40 96 0.46
41 11 0.05
42 7 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
AGCATGAATGCTCTTCGGACTTAGCCCGGATACATCGCT
Found at i:13422398 original size:79 final size:79
Alignment explanation
Indices: 13422260--13422529 Score: 352
Period size: 79 Copynumber: 3.4 Consensus size: 79
13422250 ACACGTCACC
* * * * *
13422260 AGCATGATTGCTCTTACGGGATTTAGCACGGAT-TATCACT-GCACGAATGCTCTTTCGGAACTT
1 AGCATGAATGCTCTT-C-GGACTTAGCCCGGATACATCACTAGCATGAATGCTC-TTCGGAACTT
13422323 AGCCCGGATACATCGCT
63 AGCCCGGATACATCGCT
*
13422340 AGCATGAAATGCTCTTCGGACTTAGCCCGGATACATCGCTAGCA-GAATGCTCTTCGGAACTTAG
1 AGCATG-AATGCTCTTCGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAG
* *
13422404 CCTGGATACATCACT
65 CCCGGATACATCGCT
* *
13422419 AGCATGAATGCTCTTCGGGACTTAGCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAG
13422484 CCCGGATAC-TCGCT
65 CCCGGATACATCGCT
13422498 AGCATGAATGCTCTTGCGGAC-TAGCCCCGGAT
1 AGCATGAATGCTCTT-CGGACTTAG-CCCGGAT
13422530 TTAGTACTCG
Statistics
Matches: 170, Mismatches: 13, Indels: 15
0.86 0.07 0.08
Matches are distributed among these distances:
78 13 0.08
79 98 0.58
80 48 0.28
81 11 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
AGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGC
CCGGATACATCGCT
Found at i:13422436 original size:119 final size:120
Alignment explanation
Indices: 13422260--13422517 Score: 357
Period size: 119 Copynumber: 2.2 Consensus size: 120
13422250 ACACGTCACC
* * * * *
13422260 AGCATGATTGCTCTTACGGGATTTAGCAC-GGAT-TATCACTGCACGAATGCTCTTTCGGAACTT
1 AGCATGAATGCTCTTGCGGAACTTAGC-CTGGATACATCACTGCACGAATGCTCTTTCGGAACTT
* *
13422323 AGCCCGGATACATCGCTAGCATGAAATGCTCTTC-GGACTTAGCCCGGATACATCGCT
65 AGCCCGAATACATCACTAGCATG-AATGCTCTTCGGGACTTAGCCCGGATAC-TCGCT
* *
13422380 AGCA-GAATGCTCTT-CGGAACTTAGCCTGGATACATCACTAGCATGAATGCTC-TTCGGGACTT
1 AGCATGAATGCTCTTGCGGAACTTAGCCTGGATACATCACT-GCACGAATGCTCTTTCGGAACTT
13422442 AGCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACTCGCT
65 AGCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACTCGCT
13422498 AGCATGAATGCTCTTGCGGA
1 AGCATGAATGCTCTTGCGGA
13422518 CTAGCCCCGG
Statistics
Matches: 124, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
117 1 0.01
118 32 0.26
119 72 0.58
120 19 0.15
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
AGCATGAATGCTCTTGCGGAACTTAGCCTGGATACATCACTGCACGAATGCTCTTTCGGAACTTA
GCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACTCGCT
Done.