Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 52 of 172
Found at i:13904550 original size:36 final size:36
Alignment explanation
Indices: 13904510--13904584 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
13904500 ATGTTGATAT
13904510 TAAGCATTAAGTTGAGTAAATGTCAATTGTTGAGGG
1 TAAGCATTAAGTTGAGTAAATGTCAATTGTTGAGGG
13904546 TAAGCATTAAGTTGAGTAAATGTCAATTGTTGAGGG
1 TAAGCATTAAGTTGAGTAAATGTCAATTGTTGAGGG
13904582 TAA
1 TAA
13904585 AAGTACAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (36 bp):
TAAGCATTAAGTTGAGTAAATGTCAATTGTTGAGGG
Found at i:13915941 original size:16 final size:17
Alignment explanation
Indices: 13915920--13915952 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13915910 AATTTTAGGG
13915920 GCAAAAGTAT-AATTTT
1 GCAAAAGTATGAATTTT
*
13915936 GCAAAATTATGAATTTT
1 GCAAAAGTATGAATTTT
13915953 TGACTGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (17 bp):
GCAAAAGTATGAATTTT
Found at i:13918058 original size:25 final size:25
Alignment explanation
Indices: 13918030--13918080 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
13918020 TGTAGCTACG
13918030 TTCTGACCCACAGCTCGTGTGAGCA
1 TTCTGACCCACAGCTCGTGTGAGCA
** *
13918055 TTCTGATTCACAGGTCGTGTGAGCA
1 TTCTGACCCACAGCTCGTGTGAGCA
13918080 T
1 T
13918081 ACATGTACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.29
Consensus pattern (25 bp):
TTCTGACCCACAGCTCGTGTGAGCA
Found at i:13920588 original size:108 final size:109
Alignment explanation
Indices: 13920448--13920677 Score: 295
Period size: 108 Copynumber: 2.1 Consensus size: 109
13920438 AAGTCAGACA
* * * *
13920448 GTTACATGGCCTGGCACACGGGCATATAGCTTGGCCGTGTGACCCAACTTCGAAAGTTACACAGG
1 GTTACATGGCCTGGCACACAGGCATATAGCTTGGCCATGTGACCCAAATTCAAAAGTTACACAGG
* *
13920513 CACGGAC-ATGGCTGGGACAC-AGCCGTGTGTCCCTATTTC-AGTT
66 CACGGACAAGGGCTGGGACACGA-CCATGTGTCCCTATTTCGA-TT
* * * **
13920556 GTTACATGGCCTGGCACACAGGCTTGTGGCTTGGCCATGTGACCCAAATTCAAAAGTTACATGGG
1 GTTACATGGCCTGGCACACAGGCATATAGCTTGGCCATGTGACCCAAATTCAAAAGTTACACAGG
* *
13920621 CACGGACAAGGGTTGGGACACGACTATGTGTCCCTATTTCGATT
66 CACGGACAAGGGCTGGGACACGACCATGTGTCCCTATTTCGATT
*
13920665 GTTACACGGCCTG
1 GTTACATGGCCTG
13920678 AGACACGGGT
Statistics
Matches: 105, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
108 63 0.60
109 40 0.38
110 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (109 bp):
GTTACATGGCCTGGCACACAGGCATATAGCTTGGCCATGTGACCCAAATTCAAAAGTTACACAGG
CACGGACAAGGGCTGGGACACGACCATGTGTCCCTATTTCGATT
Found at i:13922561 original size:9 final size:9
Alignment explanation
Indices: 13922549--13922573 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
13922539 CTAAGTACGC
13922549 TAATTGAAT
1 TAATTGAAT
13922558 TAATTGAAT
1 TAATTGAAT
13922567 TAATTGA
1 TAATTGA
13922574 GAAAGTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (9 bp):
TAATTGAAT
Found at i:13936099 original size:39 final size:39
Alignment explanation
Indices: 13936040--13936224 Score: 208
Period size: 39 Copynumber: 4.7 Consensus size: 39
13936030 TGAAAGTTCT
* * * * *
13936040 ATCAGGGGTATCGAAGTACAACAGCGACATGTGAGTGCA
1 ATCAAGGGTACCGAAGTACAACAGGGGCACGTGAGTGCA
13936079 ATCAAGGGTACCGAAGTACAACAGGGGCACGTGAGTGCA
1 ATCAAGGGTACCGAAGTACAACAGGGGCACGTGAGTGCA
* * *
13936118 ATCAAGGGTACCGAAGTACAATAGGGGCACATGAGTGCG
1 ATCAAGGGTACCGAAGTACAACAGGGGCACGTGAGTGCA
** * * ***
13936157 ATCAAGGGTATTGAAGTACAACAGGGGCACATAAGTATG
1 ATCAAGGGTACCGAAGTACAACAGGGGCACGTGAGTGCA
* * *
13936196 ATCAGGGGTACTGAAGTACAATAGGGGCA
1 ATCAAGGGTACCGAAGTACAACAGGGGCA
13936225 TGTAAGTACC
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.35, C:0.17, G:0.32, T:0.17
Consensus pattern (39 bp):
ATCAAGGGTACCGAAGTACAACAGGGGCACGTGAGTGCA
Found at i:13936248 original size:27 final size:27
Alignment explanation
Indices: 13936203--13936258 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
13936193 ATGATCAGGG
* *
13936203 GTACTGAAGTACAATAGGGGCATGTAA
1 GTACCGAAGTACAACAGGGGCATGTAA
*
13936230 GTACCGAAGTATAACAGGGGCATGTAA
1 GTACCGAAGTACAACAGGGGCATGTAA
13936257 GT
1 GT
13936259 GCGATCAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.21
Consensus pattern (27 bp):
GTACCGAAGTACAACAGGGGCATGTAA
Found at i:13945368 original size:19 final size:19
Alignment explanation
Indices: 13945344--13945383 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
13945334 ATCTCATTTC
13945344 ATTCA-TTGCATTTAGATTA
1 ATTCATTTGCATTTAG-TTA
13945363 ATTCATTTGCATTTAGTTA
1 ATTCATTTGCATTTAGTTA
13945382 AT
1 AT
13945384 ATTAATTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (19 bp):
ATTCATTTGCATTTAGTTA
Found at i:13948312 original size:18 final size:19
Alignment explanation
Indices: 13948273--13948312 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
13948263 GGTATAATTT
*
13948273 AAAATGAAAATTTTAAAGA
1 AAAATGAAAATTATAAAGA
13948292 AAAATGAAAATTATAAA-A
1 AAAATGAAAATTATAAAGA
13948310 AAA
1 AAA
13948313 GGATGCTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (19 bp):
AAAATGAAAATTATAAAGA
Found at i:13958969 original size:13 final size:13
Alignment explanation
Indices: 13958951--13958977 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13958941 TATGAATTTG
13958951 GCCCATTGTAATT
1 GCCCATTGTAATT
13958964 GCCCATTGTAATT
1 GCCCATTGTAATT
13958977 G
1 G
13958978 GACTTTATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:13961651 original size:45 final size:45
Alignment explanation
Indices: 13961587--13961678 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
13961577 TTTTTCATCC
*
13961587 ATTTCCATGCTAATCGATCCGTCCCTGTAGCAAAGGAGGGTGTCA
1 ATTTCCATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCA
13961632 ATTTCCATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCA
1 ATTTCCATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCA
13961677 AT
1 AT
13961679 AGAACTGCTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (45 bp):
ATTTCCATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCA
Found at i:13961688 original size:45 final size:45
Alignment explanation
Indices: 13961592--13961688 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
13961582 CATCCATTTC
* ***
13961592 CATGCTAATCGATCCGTCCCTGTAGCAAAGGAGGGTGTCAATTTC
1 CATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCAATGAA
13961637 CATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCAATAGAA
1 CATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCAAT-GAA
13961683 C-TGCTA
1 CATGCTA
13961689 TATTCACGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
45 46 0.98
46 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (45 bp):
CATGCTAATCGATCCGTCCCTATAGCAAAGGAGGGTGTCAATGAA
Found at i:13965140 original size:15 final size:16
Alignment explanation
Indices: 13965109--13965141 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
13965099 TGTAACCTTT
13965109 AACTTAATTAACATTTA
1 AACTTAATT-ACATTTA
13965126 AACTTAATT-CATTTA
1 AACTTAATTACATTTA
13965141 A
1 A
13965142 TTGCTTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (16 bp):
AACTTAATTACATTTA
Found at i:13966356 original size:50 final size:50
Alignment explanation
Indices: 13966275--13966376 Score: 188
Period size: 50 Copynumber: 2.0 Consensus size: 50
13966265 GCTTTGGGAC
13966275 AAACCACTTGTACTTAACTATTCATTCAATTAATAAAATTATCAAATAAA
1 AAACCACTTGTACTTAACTATTCATTCAATTAATAAAATTATCAAATAAA
13966325 AAACCACTTGTACTTAACTATTCATAT-AATTAATAAAATTATCAAATAAA
1 AAACCACTTGTACTTAACTATTCAT-TCAATTAATAAAATTATCAAATAAA
13966375 AA
1 AA
13966377 TTCAATATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (50 bp):
AAACCACTTGTACTTAACTATTCATTCAATTAATAAAATTATCAAATAAA
Found at i:13989267 original size:13 final size:13
Alignment explanation
Indices: 13989239--13989278 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
13989229 TAAAGTATTT
*
13989239 TAAAATT-AAAAT
1 TAAAATTAAAAAA
13989251 TAAAATTAAAAAA
1 TAAAATTAAAAAA
*
13989264 TAAAAATAAAAAA
1 TAAAATTAAAAAA
13989277 TA
1 TA
13989279 TATATTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 7 0.28
13 18 0.72
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (13 bp):
TAAAATTAAAAAA
Found at i:13991767 original size:21 final size:21
Alignment explanation
Indices: 13991743--13991791 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
13991733 TATAACTATC
** *
13991743 ATATCATTGTTTAATTGTGTA
1 ATATCATCATTTAATTGTATA
*
13991764 ATATCATCATTTGATTGTATA
1 ATATCATCATTTAATTGTATA
13991785 ATATCAT
1 ATATCAT
13991792 ATCATAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (21 bp):
ATATCATCATTTAATTGTATA
Found at i:14002192 original size:49 final size:49
Alignment explanation
Indices: 14002111--14002253 Score: 144
Period size: 49 Copynumber: 2.9 Consensus size: 49
14002101 ACAGTGGCCC
* * ** * *
14002111 ATCTAGTTTGCAACTAACATGCCCTAATAGTGGTCTATCACATT-GGCGA
1 ATCTGGTTAGCAACTAACATGCCCTACCAGTGGCCTATCACATTCAGC-A
* ** * *
14002160 ATCTGGTTAGCAACTAACATGCCCTACCAGTGGCCCATCTTATTCATCC
1 ATCTGGTTAGCAACTAACATGCCCTACCAGTGGCCTATCACATTCAGCA
* * *
14002209 ATCTGGTTAGCAACTAACATACCCTACCTGTGGCCTATCATATTC
1 ATCTGGTTAGCAACTAACATGCCCTACCAGTGGCCTATCACATTC
14002254 GGATACCGAG
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 77 0.99
50 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (49 bp):
ATCTGGTTAGCAACTAACATGCCCTACCAGTGGCCTATCACATTCAGCA
Found at i:14025504 original size:19 final size:19
Alignment explanation
Indices: 14025482--14025519 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14025472 TGAATCATCC
14025482 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
14025501 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
14025520 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:14034622 original size:50 final size:50
Alignment explanation
Indices: 14034555--14034691 Score: 157
Period size: 50 Copynumber: 2.7 Consensus size: 50
14034545 TTTCTTGTAC
* * ** *
14034555 TGCCAATGCCATATCCCAGATATGGTATTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTATTACATGGGACCTCTCATATCGG
* * * ** *
14034605 TGCCCATGCCATGTCCCATACATGGTTTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTATTACATGGGACCTCTCATATCGG
* *
14034655 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTATTACATGGGA
14034692 TCTGATTCCC
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTATTACATGGGACCTCTCATATCGG
Found at i:14058446 original size:29 final size:29
Alignment explanation
Indices: 14058401--14058486 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 29
14058391 TGCCACGACT
* *
14058401 ATTAGCAACTCGAACAAAGTCTCTCAACC
1 ATTAACAACTCAAACAAAGTCTCTCAACC
* * *
14058430 ATTAACCAGTCAAACAAAATCTCTCAACC
1 ATTAACAACTCAAACAAAGTCTCTCAACC
*
14058459 ATTAACAACTCGAACAAAGTCTCTCAAC
1 ATTAACAACTCAAACAAAGTCTCTCAAC
14058487 TATAGTGCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.42, C:0.30, G:0.07, T:0.21
Consensus pattern (29 bp):
ATTAACAACTCAAACAAAGTCTCTCAACC
Found at i:14058924 original size:26 final size:26
Alignment explanation
Indices: 14058864--14058924 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
14058854 GAGTTTGCCT
*
14058864 CAATCTATAGTTTTCTATCATTTTCA
1 CAATCTATAGTATTCTATCATTTTCA
* *
14058890 TAGTCTATAGTATTCTAT-AGTTTTCA
1 CAATCTATAGTATTCTATCA-TTTTCA
*
14058916 CAATATATA
1 CAATCTATA
14058925 ATTTTCACAG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.31, C:0.15, G:0.07, T:0.48
Consensus pattern (26 bp):
CAATCTATAGTATTCTATCATTTTCA
Found at i:14063959 original size:29 final size:29
Alignment explanation
Indices: 14063917--14064171 Score: 212
Period size: 29 Copynumber: 8.8 Consensus size: 29
14063907 AGGCATATCA
* * *
14063917 ACGATCATCAATTATGAAAAGGGATACCT-
1 ACGACCATCGATTATGAAAAGGGAT-GCTG
* * *
14063946 TCGACTATCGATTATGAAAAGGGATGGTG
1 ACGACCATCGATTATGAAAAGGGATGCTG
* * * *
14063975 ACGACCATCAACTATGAAAAAGGATGGTG
1 ACGACCATCGATTATGAAAAGGGATGCTG
* *
14064004 ACGACCATTGATTATGACAAGCGG-TAGCT-
1 ACGACCATCGATTATGAAAAG-GGAT-GCTG
* * * * *
14064033 TCGGCTATTGATTATGAAAAGGGATGGTG
1 ACGACCATCGATTATGAAAAGGGATGCTG
*
14064062 ACGACCATCAATTATGAAAAGGGATAGCT-
1 ACGACCATCGATTATGAAAAGGGAT-GCTG
** * *
14064091 TTGACTATCGATTATGAAAAGGGATGGTG
1 ACGACCATCGATTATGAAAAGGGATGCTG
** *
14064120 ACGACCATTAATTATGAAAAGGGATGGTG
1 ACGACCATCGATTATGAAAAGGGATGCTG
*
14064149 ACGACCATCGATTATAAAAAGGG
1 ACGACCATCGATTATGAAAAGGG
14064172 TCATCAACTA
Statistics
Matches: 178, Mismatches: 41, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
28 7 0.04
29 165 0.93
30 6 0.03
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (29 bp):
ACGACCATCGATTATGAAAAGGGATGCTG
Found at i:14064017 original size:58 final size:58
Alignment explanation
Indices: 14063947--14064384 Score: 330
Period size: 58 Copynumber: 7.7 Consensus size: 58
14063937 GGGATACCTT
* * * *
14063947 CGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAAGGATGGTGA
1 CGACCATCGATTATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGA
* * * * * * *
14064005 CGACCATTGATTATGACAAGCGG-TAGCT-TCGGCTATTGATTATGAAAAGGGATGGTGA
1 CGACCATCGATTATGAAAAG-GGAT-GGTGACGACCATCGATTATGAAAAGGGATGGTGA
* * ** *
14064063 CGACCATCAATTATGAAAAGGGATAGCT-TTGACTATCGATTATGAAAAGGGATGGTGA
1 CGACCATCGATTATGAAAAGGGAT-GGTGACGACCATCGATTATGAAAAGGGATGGTGA
**
14064121 CGACCATTAATTATGAAAAGGGATGGTGACGACCATCGATTAT-AAAA---A--G-G-
1 CGACCATCGATTATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGA
* * * * * * **
14064171 -G-TCATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGTTT
1 CGACCATCGATTATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGA
* * * * * * * *
14064227 TGGCTATCGACTATGAAAAGGGATGGTGACGACTATCAACTATGGAAAGGGATGGTGA
1 CGACCATCGATTATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGA
* * * * * *
14064285 CGACCATCGATTATAAAAAGGGATAGCT-TCGGCTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCGATTATGAAAAGGGAT-GGTGACGACCATCGATTATGAAAAGGGATGGTGA
* * * * *
14064343 TGACTATCAACTATGAAAAGGGATGGTGACAACCATCG-TTAT
1 CGACCATCGATTATGAAAAGGGATGGTGACGACCATCGATTAT
14064385 TCCATTTTGT
Statistics
Matches: 304, Mismatches: 60, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
48 36 0.12
49 5 0.02
51 1 0.00
52 2 0.01
54 2 0.01
57 14 0.05
58 238 0.78
59 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (58 bp):
CGACCATCGATTATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGA
Found at i:14064078 original size:87 final size:86
Alignment explanation
Indices: 14063917--14064170 Score: 280
Period size: 87 Copynumber: 2.9 Consensus size: 86
14063907 AGGCATATCA
* * * *
14063917 ACGATCATCAATTATGAAAAGGGATACCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCA
1 ACGACCATCGATTATGAAAAGGG-TAGCTTCGACTATTGATTATGAAAAGGGATGGTGACGACCA
* *
14063982 TCAACTATGAAAAAGGAT-GGT
65 TCAATTATGAAAAAGGATAGCT
* * *
14064003 GACGACCATTGATTATGACAAGCGGTAGCTTCGGCTATTGATTATGAAAAGGGATGGTGACGACC
1 -ACGACCATCGATTATGAAAAG-GGTAGCTTCGACTATTGATTATGAAAAGGGATGGTGACGACC
*
14064068 ATCAATTATGAAAAGGGATAGCT
64 ATCAATTATGAAAAAGGATAGCT
** * * * * *
14064091 TTGACTATCGATTATGAAAAGGG-ATGGTGACGACCATTAATTATGAAAAGGGATGGTGACGACC
1 ACGACCATCGATTATGAAAAGGGTA-GCT-TCGACTATTGATTATGAAAAGGGATGGTGACGACC
*
14064155 ATCGATTAT-AAAAAGG
64 ATCAATTATGAAAAAGG
14064171 GTCATCAACT
Statistics
Matches: 141, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
85 1 0.01
86 10 0.07
87 126 0.89
88 4 0.03
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (86 bp):
ACGACCATCGATTATGAAAAGGGTAGCTTCGACTATTGATTATGAAAAGGGATGGTGACGACCAT
CAATTATGAAAAAGGATAGCT
Found at i:14064218 original size:29 final size:29
Alignment explanation
Indices: 14064178--14064372 Score: 203
Period size: 29 Copynumber: 6.7 Consensus size: 29
14064168 AGGGTCATCA
* *
14064178 ACTATGGAAAGGGATGGTGACGACCATCG
1 ACTATGAAAAGGGATGGTGACGACTATCG
* * * *** *
14064207 ATTATAAAAAGGGATAGTTTTGGCTATCG
1 ACTATGAAAAGGGATGGTGACGACTATCG
*
14064236 ACTATGAAAAGGGATGGTGACGACTATCA
1 ACTATGAAAAGGGATGGTGACGACTATCG
* *
14064265 ACTATGGAAAGGGATGGTGACGACCATCG
1 ACTATGAAAAGGGATGGTGACGACTATCG
* * * * *
14064294 ATTATAAAAAGGGATAGCT-TCGGCTATCG
1 ACTATGAAAAGGGAT-GGTGACGACTATCG
* *
14064323 ACTATGAAAAGGGATGGTGATGACTATCA
1 ACTATGAAAAGGGATGGTGACGACTATCG
14064352 ACTATGAAAAGGGATGGTGAC
1 ACTATGAAAAGGGATGGTGAC
14064373 AACCATCGTT
Statistics
Matches: 129, Mismatches: 35, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
28 2 0.02
29 125 0.97
30 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (29 bp):
ACTATGAAAAGGGATGGTGACGACTATCG
Found at i:14064292 original size:135 final size:135
Alignment explanation
Indices: 14064045--14064306 Score: 434
Period size: 135 Copynumber: 1.9 Consensus size: 135
14064035 GGCTATTGAT
* *
14064045 TATGAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATAGCTTTGACTATCGATTATGAAA
1 TATGAAAAGGGATGGTGACGACCATCAATTATAAAAAGGGATAGCTTTGACTATCGACTATGAAA
* *
14064110 AGGGATGGTGACGACCATTAATTATGAAAAGGGATGGTGACGACCATCGATTATAAAAAGGGTCA
66 AGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCGATTATAAAAAGGGTCA
14064175 TCAAC
131 TCAAC
* * * *
14064180 TATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGTTTTGGCTATCGACTATGAAA
1 TATGAAAAGGGATGGTGACGACCATCAATTATAAAAAGGGATAGCTTTGACTATCGACTATGAAA
* *
14064245 AGGGATGGTGACGACTATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGG
66 AGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCGATTATAAAAAGGG
14064307 ATAGCTTCGG
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
135 117 1.00
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (135 bp):
TATGAAAAGGGATGGTGACGACCATCAATTATAAAAAGGGATAGCTTTGACTATCGACTATGAAA
AGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCGATTATAAAAAGGGTCA
TCAAC
Found at i:14064320 original size:87 final size:87
Alignment explanation
Indices: 14064174--14064384 Score: 370
Period size: 87 Copynumber: 2.4 Consensus size: 87
14064164 AAAAAGGGTC
* *
14064174 ATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGTTTTGGCTATCGACT
1 ATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGCTTCGGCTATCGACT
14064239 ATGAAAAGGGATGGTGACGACT
66 ATGAAAAGGGATGGTGACGACT
14064261 ATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGCTTCGGCTATCGACT
1 ATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGCTTCGGCTATCGACT
*
14064326 ATGAAAAGGGATGGTGATGACT
66 ATGAAAAGGGATGGTGACGACT
* *
14064348 ATCAACTATGAAAAGGGATGGTGACAACCATCG-TTAT
1 ATCAACTATGGAAAGGGATGGTGACGACCATCGATTAT
14064385 TCCATTTTGT
Statistics
Matches: 119, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
86 4 0.03
87 115 0.97
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (87 bp):
ATCAACTATGGAAAGGGATGGTGACGACCATCGATTATAAAAAGGGATAGCTTCGGCTATCGACT
ATGAAAAGGGATGGTGACGACT
Found at i:14071197 original size:30 final size:30
Alignment explanation
Indices: 14071157--14071235 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 30
14071147 AGCCGAAGCT
*
14071157 ATCCCTTTTCATTATTTGATGGGCATCATC
1 ATCCCTTTTCATTATTTGATGGGCATCACC
* * * *
14071187 ATCCTTTTTCATT-GTTGATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATGGGCATCACC
* *
14071216 ATCCCCTTTCATAATTTGAT
1 ATCCCTTTTCATTATTTGAT
14071236 AGTCGAAGCT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 22 0.56
30 17 0.44
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.44
Consensus pattern (30 bp):
ATCCCTTTTCATTATTTGATGGGCATCACC
Found at i:14071370 original size:31 final size:32
Alignment explanation
Indices: 14071334--14071409 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 32
14071324 TGGTGTCACC
** *
14071334 ATCCCTTTTTCA-TAATTTGATAGCTGAGGCT
1 ATCCCTTTTTCATTAATTTGATAGCCAAAGCT
*
14071365 ATCCC-TTTTCATTATTTTGATAGCCAAAGCT
1 ATCCCTTTTTCATTAATTTGATAGCCAAAGCT
14071396 ATCCC-TTTTCATTA
1 ATCCCTTTTTCATTA
14071410 GCTGATGATC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 6 0.15
31 34 0.85
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (32 bp):
ATCCCTTTTTCATTAATTTGATAGCCAAAGCT
Found at i:14078105 original size:27 final size:27
Alignment explanation
Indices: 14078072--14078124 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
14078062 TAGTTTAATC
14078072 AATTATAAAACATAAACACAAAAAATT
1 AATTATAAAACATAAACACAAAAAATT
14078099 AATTATAAAACATAAACACAAAAAAT
1 AATTATAAAACATAAACACAAAAAAT
14078125 AACGTACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (27 bp):
AATTATAAAACATAAACACAAAAAATT
Found at i:14081467 original size:24 final size:24
Alignment explanation
Indices: 14081435--14081672 Score: 172
Period size: 24 Copynumber: 9.4 Consensus size: 24
14081425 GGTGACGAAG
14081435 CTGCTGCTGCCGCTGAAGTTCCAA
1 CTGCTGCTGCCGCTGAAGTTCCAA
*
14081459 CTGCTGCTGCTGCTGCAGCTGTAGTTCCAA
1 ---CTGCTGCTGC--C-GCTGAAGTTCCAA
* * *
14081489 CTGCTGCTGCCGCTGTAA-CTCTAG
1 CTGCTGCTGCCGCTG-AAGTTCCAA
* *
14081513 CTGCTGCTGCCGCTGTAGTTCCAGTTG
1 CTGCTGCTGCCGCTGAAGTTCCA---A
* *
14081540 CTGCTGTTGCCGCTGAAGTTCCAG
1 CTGCTGCTGCCGCTGAAGTTCCAA
*
14081564 CTGCTGCTGCCTCTGAAGTTCCAA
1 CTGCTGCTGCCGCTGAAGTTCCAA
* ** * * **
14081588 CTGCTGCTGCTGCTGCTGCTGCTG
1 CTGCTGCTGCCGCTGAAGTTCCAA
* *
14081612 CTGCTGCTGTCGCTTAAGTTCCAA
1 CTGCTGCTGCCGCTGAAGTTCCAA
*
14081636 TTGCTGCTGCTGTCGCTGAAGTTCCAA
1 ---CTGCTGCTGCCGCTGAAGTTCCAA
*
14081663 CTGCCGCTGC
1 CTGCTGCTGC
14081673 TGTTGAAACT
Statistics
Matches: 167, Mismatches: 33, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
23 1 0.01
24 86 0.51
25 2 0.01
27 65 0.39
29 1 0.01
30 12 0.07
ACGTcount: A:0.12, C:0.32, G:0.26, T:0.30
Consensus pattern (24 bp):
CTGCTGCTGCCGCTGAAGTTCCAA
Found at i:14081592 original size:75 final size:75
Alignment explanation
Indices: 14081435--14081672 Score: 225
Period size: 75 Copynumber: 3.1 Consensus size: 75
14081425 GGTGACGAAG
* * * *
14081435 CTGCTGCTGCCGCTGAAGTTCCAACTGCTGCTGCTGCTGCAGCTGTAGTTCCAACTGCTGCTGCC
1 CTGCTGCTGCCGCTGTAGTTCC-A--GCTGCTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCC
* * *
14081500 GCTGTAA-CTCTAG
63 GCTG-AAGTTCCAA
* * *
14081513 CTGCTGCTGCCGCTGTAGTTCCAGTTGCTGCTGTTGCCGCTGAAGTTCCAGCTGCTGCTGCCTCT
1 CTGCTGCTGCCGCTGTAGTTCCAGCTGCTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCCGCT
14081578 GAAGTTCCAA
66 GAAGTTCCAA
* * * * *
14081588 CTGCTGCTGCTGCTGCT-G---CTGCTGCTGCTGCTGTCGCTTAAGTTCCAATTGCTGCTGCTGT
1 CTGCTGCTGCCGCTG-TAGTTCCAGCTGCTGCTGCTGCCGCTGAAGTTCC-A--GCTGCTGCTGC
14081649 CGCTGAAGTTCCAA
62 CGCTGAAGTTCCAA
*
14081663 CTGCCGCTGC
1 CTGCTGCTGC
14081673 TGTTGAAACT
Statistics
Matches: 136, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
72 23 0.17
73 1 0.01
74 2 0.01
75 87 0.64
76 1 0.01
77 1 0.01
78 21 0.15
ACGTcount: A:0.12, C:0.32, G:0.26, T:0.30
Consensus pattern (75 bp):
CTGCTGCTGCCGCTGTAGTTCCAGCTGCTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCCGCT
GAAGTTCCAA
Found at i:14081596 original size:3 final size:3
Alignment explanation
Indices: 14081588--14081620 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14081578 GAAGTTCCAA
14081588 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG
14081621 TCGCTTAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (3 bp):
CTG
Found at i:14081675 original size:27 final size:27
Alignment explanation
Indices: 14081434--14081674 Score: 190
Period size: 27 Copynumber: 9.4 Consensus size: 27
14081424 TGGTGACGAA
14081434 GCTGCTGCTGCCGCTGAAGTTCCAACT
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
*
14081461 GCTGCTGCTGCTGCAGCTGTAGTTCCAA--
1 GCTGCTGCTGC--C-GCTGAAGTTCCAACT
* *
14081489 -CTGCTGCTGCCGCTGTAA-CT-CTA--
1 GCTGCTGCTGCCGCTG-AAGTTCCAACT
* **
14081512 GCTGCTGCTGCCGCTGTAGTTCCAGTT
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
*
14081539 GCTGCTGTTGCCGCTGAAGTTCC-A--
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
*
14081563 GCTGCTGCTGCCTCTGAAGTTCCAACT
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
* **
14081590 GCTGCTGCTGCTGCT---G---CTGCT
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
* * *
14081611 GCTGCTGCTGTCGCTTAAGTTCCAATT
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
*
14081638 GCTGCTGCTGTCGCTGAAGTTCCAACT
1 GCTGCTGCTGCCGCTGAAGTTCCAACT
*
14081665 GCCGCTGCTG
1 GCTGCTGCTG
14081675 TTGAAACTGA
Statistics
Matches: 171, Mismatches: 25, Indels: 36
0.74 0.11 0.16
Matches are distributed among these distances:
21 16 0.09
23 3 0.02
24 44 0.26
25 4 0.02
27 91 0.53
29 1 0.01
30 12 0.07
ACGTcount: A:0.12, C:0.31, G:0.27, T:0.30
Consensus pattern (27 bp):
GCTGCTGCTGCCGCTGAAGTTCCAACT
Found at i:14086978 original size:34 final size:35
Alignment explanation
Indices: 14086923--14086989 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
14086913 CAAACACCAG
*
14086923 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
14086958 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
14086990 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:14095340 original size:29 final size:29
Alignment explanation
Indices: 14095295--14095397 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
14095285 CGATACATAA
* *
14095295 TACCTGATAAGTATAACACTGACACAAAG
1 TACCTGATAACTGTAACACTGACACAAAG
* *
14095324 TGCCTGATAACTGTAACAC-CACTACAAAG
1 TACCTGATAACTGTAACACTGAC-ACAAAG
* **
14095353 TATCTGATAACTGTAACA-TCGGTACAAAG
1 TACCTGATAACTGTAACACT-GACACAAAG
*
14095382 TACCTAATAACTGTAA
1 TACCTGATAACTGTAA
14095398 TCAACGGCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (29 bp):
TACCTGATAACTGTAACACTGACACAAAG
Found at i:14096000 original size:25 final size:25
Alignment explanation
Indices: 14095972--14096022 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14095962 CCAATACATG
*
14095972 TTAGCCAAATTTACCCTTATTCATT
1 TTAGACAAATTTACCCTTATTCATT
**
14095997 TTAGATGAATTTACCCTTATTCATT
1 TTAGACAAATTTACCCTTATTCATT
14096022 T
1 T
14096023 ACATCATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.47
Consensus pattern (25 bp):
TTAGACAAATTTACCCTTATTCATT
Found at i:14098424 original size:20 final size:19
Alignment explanation
Indices: 14098375--14098424 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
14098365 CTATGTAATT
14098375 ATACGGATGAATTACTGTTG
1 ATACGGAT-AATTACTGTTG
* *
14098395 ATATGTATAAGTTACTGTTG
1 ATACGGATAA-TTACTGTTG
14098415 ATACGGATAA
1 ATACGGATAA
14098425 ATTTTTGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (19 bp):
ATACGGATAATTACTGTTG
Found at i:14103631 original size:52 final size:53
Alignment explanation
Indices: 14103566--14103673 Score: 164
Period size: 52 Copynumber: 2.1 Consensus size: 53
14103556 GTCATCTTCA
* *
14103566 TTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTC-CATTTCTCCAT
1 TTTTCATTATGGAGAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCAT
* * *
14103618 TTTTCATTATGGAGAAAACTATAATCATTTCCAAATGTTTCTCATTTCTCCAT
1 TTTTCATTATGGAGAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCAT
14103671 TTT
1 TTT
14103674 AAGCAATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 36 0.72
53 14 0.28
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (53 bp):
TTTTCATTATGGAGAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCAT
Found at i:14106510 original size:26 final size:26
Alignment explanation
Indices: 14106481--14106532 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14106471 GGACCAAAGT
14106481 AGAAGAGATCCTTAATCCATTTTTGA
1 AGAAGAGATCCTTAATCCATTTTTGA
14106507 AGAAGAGATCCTTAATCCATTTTTGA
1 AGAAGAGATCCTTAATCCATTTTTGA
14106533 CTTTATTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (26 bp):
AGAAGAGATCCTTAATCCATTTTTGA
Found at i:14107685 original size:14 final size:13
Alignment explanation
Indices: 14107648--14107687 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
14107638 GAGCATTCTC
*
14107648 TTTACTCTTTTAT
1 TTTATTCTTTTAT
14107661 TTTATTCTTTTAT
1 TTTATTCTTTTAT
*
14107674 TTATATTTTTTTAT
1 TT-TATTCTTTTAT
14107688 CTAGCCAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTATTCTTTTAT
Found at i:14109711 original size:19 final size:19
Alignment explanation
Indices: 14109683--14109727 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14109673 AATTAAATGT
*
14109683 CATTTCCATTTCA-ATAAC
1 CATTTTCATTTCATATAAC
*
14109701 CAATTTTCATTTGATATAAC
1 C-ATTTTCATTTCATATAAC
14109721 CATTTTC
1 CATTTTC
14109728 CACTTGATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 16 0.70
20 6 0.26
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.44
Consensus pattern (19 bp):
CATTTTCATTTCATATAAC
Found at i:14109734 original size:20 final size:20
Alignment explanation
Indices: 14109696--14109735 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14109686 TTCCATTTCA
*
14109696 ATAACCAATTTTCATTTGAT
1 ATAACCAATTTTCACTTGAT
14109716 ATAACC-ATTTTCCACTTGAT
1 ATAACCAATTTT-CACTTGAT
14109736 GAACTATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (20 bp):
ATAACCAATTTTCACTTGAT
Found at i:14114228 original size:104 final size:104
Alignment explanation
Indices: 14114048--14114256 Score: 409
Period size: 104 Copynumber: 2.0 Consensus size: 104
14114038 TGTAGCATAT
14114048 AGCTAGCACTCTACAACACACCAAACATATCTCGGTGAATGGAGCTTAGCTCACATTCCCTTATC
1 AGCTAGCACTCTACAACACACCAAACATATCTCGGTGAATGGAGCTTAGCTCACATTCCCTTATC
14114113 TCTCCAAAACTGTCCTAAATGCCCTAGAAACACAACACA
66 TCTCCAAAACTGTCCTAAATGCCCTAGAAACACAACACA
14114152 AGCTAGCACTCTACAACACACCAAACATATCTCGGTGAATGGAGCTTAGCTCACATTCCCTTATC
1 AGCTAGCACTCTACAACACACCAAACATATCTCGGTGAATGGAGCTTAGCTCACATTCCCTTATC
*
14114217 TCTCCAAAACTGTCCTAAATGCCCTAGAAGCACAACACA
66 TCTCCAAAACTGTCCTAAATGCCCTAGAAACACAACACA
14114256 A
1 A
14114257 AGGTGAGTAC
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.34, C:0.32, G:0.12, T:0.22
Consensus pattern (104 bp):
AGCTAGCACTCTACAACACACCAAACATATCTCGGTGAATGGAGCTTAGCTCACATTCCCTTATC
TCTCCAAAACTGTCCTAAATGCCCTAGAAACACAACACA
Found at i:14120752 original size:11 final size:11
Alignment explanation
Indices: 14120736--14120793 Score: 59
Period size: 11 Copynumber: 5.4 Consensus size: 11
14120726 ATTTTTTTAA
14120736 TTTTAAAATAT
1 TTTTAAAATAT
14120747 TTTTAAAATACT
1 TTTTAAAATA-T
* *
14120759 TTTT---TTAA
1 TTTTAAAATAT
14120767 TTTTAAAATAT
1 TTTTAAAATAT
14120778 TTTTAAAATACT
1 TTTTAAAATA-T
14120790 TTTT
1 TTTT
14120794 TTAATTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
8 4 0.11
9 2 0.05
11 22 0.58
12 10 0.26
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14120765 original size:31 final size:31
Alignment explanation
Indices: 14120727--14120842 Score: 175
Period size: 31 Copynumber: 3.8 Consensus size: 31
14120717 AATATATTTA
14120727 TTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC
14120758 TTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC
* *
14120789 TTTTTTTAATTTT---TTAATTTTAAAATAC
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC
14120817 TTTTTTTAATTTTTAAAATAATTTTT
1 TTTTTTTAA-TTTTAAAAT-ATTTTT
14120843 TGGTATTTAT
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
28 22 0.29
29 4 0.05
31 44 0.58
32 1 0.01
33 5 0.07
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (31 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:14120772 original size:20 final size:19
Alignment explanation
Indices: 14120747--14120843 Score: 79
Period size: 20 Copynumber: 4.8 Consensus size: 19
14120737 TTTAAAATAT
14120747 TTTTAAAATACTTTTTTTAA
1 TTTTAAAATA-TTTTTTTAA
**
14120767 TTTTAAAATATTTTTAAAA
1 TTTTAAAATATTTTTTTAA
*** *
14120786 TACTTT-TTTTAATTTTTTAA
1 T--TTTAAAATATTTTTTTAA
14120806 TTTTAAAATACTTTTTTTAA
1 TTTTAAAATA-TTTTTTTAA
14120826 TTTTTAAAATAATTTTTT
1 -TTTTAAAAT-ATTTTTT
14120844 GGTATTTATT
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
18 3 0.05
19 10 0.17
20 27 0.46
21 18 0.31
22 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAAATATTTTTTTAA
Found at i:14120801 original size:21 final size:21
Alignment explanation
Indices: 14120776--14120843 Score: 64
Period size: 28 Copynumber: 2.9 Consensus size: 21
14120766 ATTTTAAAAT
14120776 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATACTTTTTTTA
14120797 ATTTTTTAATTTTAAAATACTTTTTTTA
1 A----TT--T-TTAAAATACTTTTTTTA
*
14120825 ATTTTTAAAATAATTTTTT
1 ATTTTTAAAATACTTTTTT
14120844 GGTATTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
21 15 0.38
22 1 0.03
24 2 0.05
25 2 0.05
27 1 0.03
28 18 0.46
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTAAAATACTTTTTTTA
Found at i:14122935 original size:29 final size:29
Alignment explanation
Indices: 14122903--14123014 Score: 152
Period size: 29 Copynumber: 3.9 Consensus size: 29
14122893 GCTATTTCAG
** *
14122903 TTAAAAGTGAGTCTTTGTGATGATCTCTA
1 TTAAAAGAAAGTCTTTGTGGTGATCTCTA
*
14122932 TTAAAAGAAAGTCTTTGTGGTAATCTCTA
1 TTAAAAGAAAGTCTTTGTGGTGATCTCTA
* *
14122961 TTAAAAGAAAGTCTTTGTGGCGATCTCTG
1 TTAAAAGAAAGTCTTTGTGGTGATCTCTA
* *
14122990 TTAAAAGAAAGCCTTTGTGGCGATC
1 TTAAAAGAAAGTCTTTGTGGTGATC
14123015 CTTCTATCTC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (29 bp):
TTAAAAGAAAGTCTTTGTGGTGATCTCTA
Found at i:14123099 original size:95 final size:95
Alignment explanation
Indices: 14122925--14123105 Score: 218
Period size: 95 Copynumber: 1.9 Consensus size: 95
14122915 CTTTGTGATG
* * * * * *
14122925 ATCTCTATTAAAAGAAAGTCTTTGTGGTAATCTCTATTAAAAGAAAGTCTTTGTGGCGATCTCTG
1 ATCTCTATTAAAAGAAAGTCTTCGTGATAATCTCTATTAAAAGAAAGCCTTTATGGCGATATCTA
14122990 TTAAAAGAAAGCCTTTGTGGCGATCCTTCT
66 TTAAAAGAAAGCCTTTGTGGCGATCCTTCT
* * * * * * *
14123020 ATCTCTGTTATAAGAAAGTCTTCGTGATTATCTCTATTATAAGGATGCCTTTATGGCTATATCTA
1 ATCTCTATTAAAAGAAAGTCTTCGTGATAATCTCTATTAAAAGAAAGCCTTTATGGCGATATCTA
* * *
14123085 TTATAAGGATGCCTTTGTGGC
66 TTAAAAGAAAGCCTTTGTGGC
14123106 TATCTCTGTT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
95 70 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (95 bp):
ATCTCTATTAAAAGAAAGTCTTCGTGATAATCTCTATTAAAAGAAAGCCTTTATGGCGATATCTA
TTAAAAGAAAGCCTTTGTGGCGATCCTTCT
Found at i:14123138 original size:29 final size:29
Alignment explanation
Indices: 14123048--14123147 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
14123038 TCTTCGTGAT
* *
14123048 TATCTCTATTATAAGGATGCCTTTATGGC
1 TATCTCTATTAAAAGGATGCCTTTGTGGC
* *
14123077 TATATCTATTATAAGGATGCCTTTGTGGC
1 TATCTCTATTAAAAGGATGCCTTTGTGGC
* **
14123106 TATCTCTGTTAAAAGGATATCTTTGTGGC
1 TATCTCTATTAAAAGGATGCCTTTGTGGC
*
14123135 TATCTCTGTTAAA
1 TATCTCTATTAAA
14123148 GAAATGTATT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (29 bp):
TATCTCTATTAAAAGGATGCCTTTGTGGC
Found at i:14123159 original size:29 final size:29
Alignment explanation
Indices: 14123098--14123183 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 29
14123088 TAAGGATGCC
* * *
14123098 TTTGTGGCTATCTCTGTTAAA-AGGATATC
1 TTTGTGGCTATCTCTGTTAAAGA-AATGTA
14123127 TTTGTGGCTATCTCTGTTAAAGAAATGTA
1 TTTGTGGCTATCTCTGTTAAAGAAATGTA
* * * *
14123156 TTTGTAGATATCTCTATTAAAGGAATGT
1 TTTGTGGCTATCTCTGTTAAAGAAATGT
14123184 CTTGTAGCAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
29 48 0.98
30 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (29 bp):
TTTGTGGCTATCTCTGTTAAAGAAATGTA
Found at i:14123160 original size:58 final size:59
Alignment explanation
Indices: 14123018--14123176 Score: 164
Period size: 58 Copynumber: 2.7 Consensus size: 59
14123008 GGCGATCCTT
* * *
14123018 CTATCTCTGTTATAAGAAA-GTCTTCGT-GATTATCTCTATTATAAGGATGCCTTTATGG
1 CTATCTCTGTTATAAGAAATGTCTTTGTGGA-TATCTCTATTAAAAGGATACCTTTATGG
* * * * * * * *
14123076 CTATATCTATTATAAG-GATGCCTTTGTGGCTATCTCTGTTAAAAGGATATCTTTGTGG
1 CTATCTCTGTTATAAGAAATGTCTTTGTGGATATCTCTATTAAAAGGATACCTTTATGG
* *
14123134 CTATCTCTGTTA-AAGAAATGTATTTGTAGATATCTCTATTAAA
1 CTATCTCTGTTATAAGAAATGTCTTTGTGGATATCTCTATTAAA
14123177 GGAATGTCTT
Statistics
Matches: 79, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
57 4 0.05
58 74 0.94
59 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (59 bp):
CTATCTCTGTTATAAGAAATGTCTTTGTGGATATCTCTATTAAAAGGATACCTTTATGG
Found at i:14125372 original size:12 final size:13
Alignment explanation
Indices: 14125354--14125395 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
14125344 AGGAAAGATT
14125354 TAATAATAATATA
1 TAATAATAATATA
14125367 -AATAATAACATATA
1 TAATAAT-A-ATATA
14125381 TACATAATAATATA
1 TA-ATAATAATATA
14125395 T
1 T
14125396 TAAAGTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.24
13 1 0.04
14 11 0.44
15 2 0.08
16 5 0.20
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:14125387 original size:16 final size:16
Alignment explanation
Indices: 14125362--14125399 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14125352 TTTAATAATA
14125362 ATATAAATAATAACAT
1 ATATAAATAATAACAT
* *
14125378 ATATACATAATAATAT
1 ATATAAATAATAACAT
14125394 AT-TAAA
1 ATATAAA
14125400 GTTGAAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAAATAATAACAT
Found at i:14125634 original size:16 final size:16
Alignment explanation
Indices: 14125589--14125635 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
14125579 TTAAAATAAT
14125589 ATTATATAATAAAATA
1 ATTATATAATAAAATA
*
14125605 ATGCATATACATAAAA-A
1 AT-TATATA-ATAAAATA
14125622 ATTATATAGATAAA
1 ATTATATA-ATAAA
14125636 TATATGAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (16 bp):
ATTATATAATAAAATA
Found at i:14125672 original size:15 final size:15
Alignment explanation
Indices: 14125652--14125704 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
14125642 AACTAATATA
*
14125652 AATAATAACACTAAT
1 AATAATAACAATAAT
* *
14125667 AATAATAACAGTAGT
1 AATAATAACAATAAT
14125682 AATAATAACAATAAT
1 AATAATAACAATAAT
14125697 AATAATAA
1 AATAATAA
14125705 TCATGGTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.26
Consensus pattern (15 bp):
AATAATAACAATAAT
Found at i:14125687 original size:30 final size:32
Alignment explanation
Indices: 14125652--14125722 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 32
14125642 AACTAATATA
*
14125652 AATAATAACACTAATAATAATAA-CA-GTAGT
1 AATAATAACAATAATAATAATAATCAGGTAGT
14125682 AATAATAACAATAATAATAATAATCATGGTAGT
1 AATAATAACAATAATAATAATAATCA-GGTAGT
*
14125715 AGTAATAA
1 AATAATAA
14125723 TGATAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 22 0.61
31 2 0.06
33 12 0.33
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.28
Consensus pattern (32 bp):
AATAATAACAATAATAATAATAATCAGGTAGT
Found at i:14125723 original size:3 final size:3
Alignment explanation
Indices: 14125652--14125705 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
14125642 AACTAATATA
* * * * * *
14125652 AAT AAT AAC ACT AAT AAT AAT AAC AGT AGT AAT AAT AAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14125700 AAT AAT
1 AAT AAT
14125706 CATGGTAGTA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:14126636 original size:23 final size:24
Alignment explanation
Indices: 14126603--14126652 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
14126593 TAATTAGATA
*
14126603 AATGTTATTTAATTATT-TTTTATT
1 AATGTTATTT-AGTATTATTTTATT
14126627 AATGTT-TTTAGTATTATTTTATT
1 AATGTTATTTAGTATTATTTTATT
14126650 AAT
1 AAT
14126653 AAATGATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 13 0.54
24 6 0.25
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
AATGTTATTTAGTATTATTTTATT
Found at i:14128805 original size:51 final size:50
Alignment explanation
Indices: 14128678--14128961 Score: 281
Period size: 51 Copynumber: 5.6 Consensus size: 50
14128668 AAAGTGATGG
* *
14128678 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAT-GA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATCGA
* * * *
14128727 GTCGCATGTGTAGTATTATGTGCAGGCTACTACGCGTACC-GAATAGCTTCGA
1 -TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAT-G-ATCGA
* * * *
14128779 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATCGA
* * * *
14128829 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC-GAATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAT-G-ATCGA
* * * *
14128880 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGG-ATGGAAAT-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAT-G--ATCGA
* *
14128931 TCACATGTGTAGTACTACGTGCAGGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
14128962 TGTGAATCGG
Statistics
Matches: 191, Mismatches: 35, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
49 8 0.04
50 72 0.38
51 103 0.54
52 8 0.04
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATCGA
Found at i:14128853 original size:101 final size:101
Alignment explanation
Indices: 14128678--14128961 Score: 455
Period size: 101 Copynumber: 2.8 Consensus size: 101
14128668 AAAGTGATGG
* *
14128678 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGAGTCGCATGTGTAGTAT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGGGTCGCATGTGTAGTAC
14128743 TATGTGCAGGCTACTACGCGTACCGAATAGCTTCGA
66 TATGTGCAGGCTACTACGCGTACCGAATAGCTTCGA
14128779 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGGGTCGCATGTGTAGTAC
*
14128844 TATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
66 TATGTGCAGGCTACTACGCGTACCGAATAGCTTCGA
* * * *
14128880 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGG-ATGGAAAT-GGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAAT-G--ATGGGTCGCATGTGTAG
*
14128943 TACTACGTGCAGGCTACTA
63 TACTATGTGCAGGCTACTA
14128962 TGTGAATCGG
Statistics
Matches: 172, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
100 2 0.01
101 137 0.80
102 31 0.18
103 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTACGCGTACCGAATAGCTTCGA
Found at i:14128940 original size:152 final size:151
Alignment explanation
Indices: 14128683--14128961 Score: 339
Period size: 152 Copynumber: 1.8 Consensus size: 151
14128673 GATGGTCACG
* * * *
14128683 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATGAGTCGCATGTGTAGTATTATGT
1 TGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATGAGTCACATGTGTAGTACTATGT
* ** * * *
14128748 GCAGGCTACTACGCGTACCGAATAGCTTCGATCACGTGTGTAGTACTATGTGTAGGCTACTACGT
66 GCAGACTACTACGCGTACCGAATAGAATCGATCACATGTGTAGTACTACGTGCAGGCTACTACGT
14128813 GTACCGGAATGATGGGTCGCA
131 GTACCGGAATGATGGGTCGCA
* * *
14128834 TGTGTAGTACTATGTGCAGGCTACTATGCGTACC-GAATAGCTTCGA-TCACGTGTGTAGTACTA
1 TGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAT-G-AT-GAGTCACATGTGTAGTACTA
* * * * *
14128897 TGTGCAGACTACTACGTGTATCGGATGGAAAT-GGTCACATGTGTAGTACTACGTGCAGGCTACT
63 TGTGCAGACTACTACGCGTACCGAATAG-AATCGATCACATGTGTAGTACTACGTGCAGGCTACT
14128961 A
127 A
14128962 TGTGAATCGG
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
150 4 0.04
151 32 0.30
152 67 0.63
153 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATGAGTCACATGTGTAGTACTATGT
GCAGACTACTACGCGTACCGAATAGAATCGATCACATGTGTAGTACTACGTGCAGGCTACTACGT
GTACCGGAATGATGGGTCGCA
Found at i:14129061 original size:33 final size:32
Alignment explanation
Indices: 14128990--14129144 Score: 140
Period size: 33 Copynumber: 4.7 Consensus size: 32
14128980 GAATATAAAG
14128990 GGGGTTGCTAAGTGCTGATTCCCC----CA-A
1 GGGGTTGCTAAGTGCTGATTCCCCAAATCATA
*
14129017 GGGGTTGCTAAGTGCTGATTCCCCAAATCATC
1 GGGGTTGCTAAGTGCTGATTCCCCAAATCATA
*
14129049 GGTGGTTGCTAAGTGCTGATTCCACCGTAACGGATGTATAA
1 GG-GGTTGCTAAGTGCTGATTCC-CC--AA---AT-CAT-A
* *
14129090 GGGGTTGCTAAGTGCTGATTCCTCGAATCATTA
1 GGGGTTGCTAAGTGCTGATTCCCCAAATCA-TA
*
14129123 GTGGTTGCTAAGTGCTGATTCC
1 GGGGTTGCTAAGTGCTGATTCC
14129145 ACCATATCTT
Statistics
Matches: 106, Mismatches: 7, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
27 24 0.23
31 2 0.02
32 2 0.02
33 43 0.41
34 5 0.05
36 2 0.02
37 1 0.01
39 3 0.03
40 22 0.21
41 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (32 bp):
GGGGTTGCTAAGTGCTGATTCCCCAAATCATA
Found at i:14130101 original size:49 final size:48
Alignment explanation
Indices: 14130023--14130123 Score: 123
Period size: 49 Copynumber: 2.1 Consensus size: 48
14130013 ATGAGTACTT
*
14130023 TCGGTAAGTGATATGTGATTCTGTATAAGACAATAGCTGGGCTATGGAA
1 TCGGTAAGTGATATGTGATTCTG-ATAAGACAATAGCTGGACTATGGAA
* * * *
14130072 TCGGTATGTGATATGTGATTACATG-TAAGACCATAGTTGGACTATGGCA
1 TCGGTAAGTGATATGTGATT-C-TGATAAGACAATAGCTGGACTATGGAA
14130121 TCG
1 TCG
14130124 AGAAAACGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
49 42 0.93
50 1 0.02
51 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.32
Consensus pattern (48 bp):
TCGGTAAGTGATATGTGATTCTGATAAGACAATAGCTGGACTATGGAA
Found at i:14136063 original size:138 final size:138
Alignment explanation
Indices: 14135815--14136082 Score: 491
Period size: 138 Copynumber: 1.9 Consensus size: 138
14135805 TTGGACGGAA
*
14135815 TTATTACGGAAATTACAAGTTTCGAGCTTTTAATTTAAGTTTAAATCATATTGGGTTCAGTTTTT
1 TTATTACGGAAATTACAAGTTTCGAGCTTTTAATTTAAGTTTAAATCATATTGGGTTCAGGTTTT
14135880 AGACTTAATTTTTATTATATATGAGTCCAAGATAGTATTTATCAACTCTTATTATTTTTTATTTT
66 AGACTTAATTTTTATTATATATGAGTCCAAGATAGTATTTATCAACTCTTATTATTTTTTATTTT
14135945 ATATGAGT
131 ATATGAGT
* *
14135953 TTATTACGGAAATTACGAGTTTCGAGCTTTTAATTTAAGTTTAAATCATATTGGGTTCGGGTTTT
1 TTATTACGGAAATTACAAGTTTCGAGCTTTTAATTTAAGTTTAAATCATATTGGGTTCAGGTTTT
* *
14136018 AGACTTAATTTTTATTATATGTGAGTCCAAGATATTATTTATCAACTCTTATTATTTTTTATTTT
66 AGACTTAATTTTTATTATATATGAGTCCAAGATAGTATTTATCAACTCTTATTATTTTTTATTTT
14136083 TTTGTTCCGA
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 125 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (138 bp):
TTATTACGGAAATTACAAGTTTCGAGCTTTTAATTTAAGTTTAAATCATATTGGGTTCAGGTTTT
AGACTTAATTTTTATTATATATGAGTCCAAGATAGTATTTATCAACTCTTATTATTTTTTATTTT
ATATGAGT
Found at i:14136213 original size:12 final size:12
Alignment explanation
Indices: 14136196--14136223 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14136186 TTCATTATTA
14136196 GTCTATATAAAG
1 GTCTATATAAAG
14136208 GTCTATATAAAG
1 GTCTATATAAAG
14136220 GTCT
1 GTCT
14136224 TTTCATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (12 bp):
GTCTATATAAAG
Found at i:14136313 original size:25 final size:25
Alignment explanation
Indices: 14136287--14136355 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
14136277 AGTTAATAAA
*
14136287 TTCTCTTTGAGTTTTCTTTCAAGAAT
1 TTCTC-TTCAGTTTTCTTTCAAGAAT
*
14136313 TTTTCTTCAGTTTTCTTTCAAGAAT
1 TTCTCTTCAGTTTTCTTTCAAGAAT
* *
14136338 TTTTCTTCAATTTTCTTT
1 TTCTCTTCAGTTTTCTTT
14136356 TAGAAGAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.17, C:0.16, G:0.07, T:0.59
Consensus pattern (25 bp):
TTCTCTTCAGTTTTCTTTCAAGAAT
Found at i:14136347 original size:14 final size:15
Alignment explanation
Indices: 14136298--14136344 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
14136288 TCTCTTTGAG
14136298 TTTTCTTTCAAGAAT
1 TTTTCTTTCAAGAAT
14136313 TTTTC-TTC-AG---
1 TTTTCTTTCAAGAAT
14136323 TTTTCTTTCAAGAAT
1 TTTTCTTTCAAGAAT
14136338 TTTTCTT
1 TTTTCTT
14136345 CAATTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
10 5 0.19
11 3 0.11
12 2 0.07
13 2 0.07
14 3 0.11
15 12 0.44
ACGTcount: A:0.19, C:0.15, G:0.06, T:0.60
Consensus pattern (15 bp):
TTTTCTTTCAAGAAT
Found at i:14143821 original size:20 final size:19
Alignment explanation
Indices: 14143796--14143833 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 19
14143786 GAAATTGACA
14143796 TTTTTTTCTTAATTTGGTAT
1 TTTTTTTC-TAATTTGGTAT
14143816 TTTTTTTCTAATTTGGTA
1 TTTTTTTCTAATTTGGTA
14143834 CCTGAGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.16, C:0.05, G:0.11, T:0.68
Consensus pattern (19 bp):
TTTTTTTCTAATTTGGTAT
Found at i:14143828 original size:79 final size:82
Alignment explanation
Indices: 14143737--14143886 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 82
14143727 TTCAACTTGA
* * * *
14143737 TTTTTTTCTAATTTAGTATCTAAGATTTTTTT-TT-TTCATTTTGGTACTTGAAATTGACA-TTT
1 TTTTTTTCTAATTTAGTACCTAAGATTTTTTTATTATCCAATTTGGTACTTGAAATAGACACTTT
14143799 TTTTCTTAATTTGGTAT
66 TTTTCTTAATTTGGTAT
* * * * *
14143816 TTTTTTTCTAATTTGGTACCTGAGCTTTTTTTATTATCCAATTTGGTTCTTGAACTAGACACTTT
1 TTTTTTTCTAATTTAGTACCTAAGATTTTTTTATTATCCAATTTGGTACTTGAAATAGACACTTT
14143881 TTTTCT
66 TTTTCT
14143887 AGTTTGATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 28 0.47
80 2 0.03
81 20 0.34
82 9 0.15
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.58
Consensus pattern (82 bp):
TTTTTTTCTAATTTAGTACCTAAGATTTTTTTATTATCCAATTTGGTACTTGAAATAGACACTTT
TTTTCTTAATTTGGTAT
Found at i:14144009 original size:56 final size:56
Alignment explanation
Indices: 14143948--14144059 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 56
14143938 TGTACTTTTT
* * * * *
14143948 TTTTTCTAATTTGTTACCTGAGTTTTTTTTGTCCAATTTGGTTA-TTGAATTTGACA
1 TTTTTCTAATATGGTACCTAAGCTTTTTTTGTCCAATTTGG-TACTTGAAATTGACA
*
14144004 TTTTTCTAGTATGGTACCTAAGCTTTTTTTGTCCAATTTGGTACTTGAAATTGACA
1 TTTTTCTAATATGGTACCTAAGCTTTTTTTGTCCAATTTGGTACTTGAAATTGACA
14144060 CTTGTACTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 2 0.04
56 47 0.96
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.51
Consensus pattern (56 bp):
TTTTTCTAATATGGTACCTAAGCTTTTTTTGTCCAATTTGGTACTTGAAATTGACA
Found at i:14144067 original size:124 final size:124
Alignment explanation
Indices: 14143815--14144175 Score: 370
Period size: 124 Copynumber: 2.8 Consensus size: 124
14143805 TAATTTGGTA
* * *
14143815 TTTTTTTTCTAATTTGGTACCTGAGCTTTTTTTATTATCCAATTTGGTTCTTGAACTAGACACTT
1 TTTTTTTTCTAATTTGATACCTGAGC-TTTTTT-TTGTCCAATTTGGTTCTTGAACTTGACA---
* * * * * *
14143880 TTTTTCTAGTTTGATATCTAA-ATTTTTTTGGTCCAATTTAGTGCACGAACTTGAAACTTGTACT
61 TTTTTCTAGTATGGTACCTAAGATTTTTTT-GTCCAATTTGGTACACGAAATTGAAACTTGTAC-
14143944 T
124 T
* * *
14143945 TTTTTTTTCTAATTTGTTACCTGAG-TTTTTTTTGTCCAATTTGGTTATTGAATTTGACATTTTT
1 TTTTTTTTCTAATTTGATACCTGAGCTTTTTTTTGTCCAATTTGGTTCTTGAACTTGACATTTTT
* ** *
14144009 CTAGTATGGTACCTAAGCTTTTTTTGTCCAATTTGGTACTTGAAATTGACACTTGTACT
66 CTAGTATGGTACCTAAGATTTTTTTGTCCAATTTGGTACACGAAATTGAAACTTGTACT
* * *
14144068 TTTTTTTT-AAATTTGATA-CTCGAGCTTTTTTTTCTGGTCCAATTTAGTTCTTGAACTTGACTT
1 TTTTTTTTCTAATTTGATACCT-GAGC-TTTTTTT-T-GTCCAATTTGGTTCTTGAACTTGAC-A
* * *
14144131 TTTTTCCTAGTCTGGTACTTAAGGTTTTTTTTGTCCAATTTGGTA
61 TTTTT-CTAGTATGGTACCTAA-GATTTTTTTGTCCAATTTGGTA
14144176 TCTAAACTTG
Statistics
Matches: 198, Mismatches: 24, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
121 2 0.01
122 11 0.06
123 9 0.05
124 52 0.26
125 8 0.04
126 22 0.11
127 29 0.15
128 20 0.10
129 21 0.11
130 24 0.12
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (124 bp):
TTTTTTTTCTAATTTGATACCTGAGCTTTTTTTTGTCCAATTTGGTTCTTGAACTTGACATTTTT
CTAGTATGGTACCTAAGATTTTTTTGTCCAATTTGGTACACGAAATTGAAACTTGTACT
Found at i:14145521 original size:30 final size:29
Alignment explanation
Indices: 14145466--14145528 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
14145456 ATATTTAACA
*
14145466 TATAAAATTTTAATAATGTTATTTTATATT
1 TATAAAATTTTAATAA-GTTATTTTATAAT
*
14145496 TATAAATATTTTAATTAA-TTGTTTTATAAT
1 TATAAA-ATTTTAA-TAAGTTATTTTATAAT
14145526 TAT
1 TAT
14145529 TTAAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 19 0.66
31 7 0.24
32 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (29 bp):
TATAAAATTTTAATAAGTTATTTTATAAT
Found at i:14151539 original size:41 final size:41
Alignment explanation
Indices: 14151482--14151572 Score: 148
Period size: 41 Copynumber: 2.2 Consensus size: 41
14151472 TCGACGAAGG
*
14151482 AGAAGAAAATTTACAACAAAACTCTATTCTAA-AGAAAATAAA
1 AGAA-AAAATCTACAACAAAACTCTATTCTAACA-AAAATAAA
14151524 AGAAAAAATCTACAACAAAACTCTATTCTAACAAAAATAAA
1 AGAAAAAATCTACAACAAAACTCTATTCTAACAAAAATAAA
14151565 AGAAAAAA
1 AGAAAAAA
14151573 AAAACCTAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 42 0.89
42 5 0.11
ACGTcount: A:0.63, C:0.13, G:0.05, T:0.19
Consensus pattern (41 bp):
AGAAAAAATCTACAACAAAACTCTATTCTAACAAAAATAAA
Found at i:14154376 original size:110 final size:109
Alignment explanation
Indices: 14154227--14154522 Score: 443
Period size: 109 Copynumber: 2.7 Consensus size: 109
14154217 TTTGACCAGC
* *
14154227 TCACAATGCTGCTCACACAAGCTGTAGAGAATCCGCAACAGATGCAGGATCTCAAGCCATCGTTA
1 TCACGATGCTGCTCACACAAGCTGTAGAGAATCTGCAACAGATGCAGGATCTC-AGCCATCGTTA
14154292 CGGTCTGTATCATCT-GTATATAGTACCTACTAAATAAAT-ATCGGG
65 CGGTCTGTATCA-CTGGTATATAGTACCTACTAAAT-AATCATCGGG
* * *
14154337 TCACGATGCTGCTCACACAAGCTGTAGAGAATCTACAACAGATGTAGGATCTCAGCCATTGTTAC
1 TCACGATGCTGCTCACACAAGCTGTAGAGAATCTGCAACAGATGCAGGATCTCAGCCATCGTTAC
*
14154402 GGTCTGTATCACTGGTATATAGTACCTGCTAAATAATCATCGGG
66 GGTCTGTATCACTGGTATATAGTACCTACTAAATAATCATCGGG
* ** * * *
14154446 TCACGATGTTGCTTGCAAAAGCTGTACAGAATCTGCAACAGATGCAGGATCTCAGCCATCGCTAC
1 TCACGATGCTGCTCACACAAGCTGTAGAGAATCTGCAACAGATGCAGGATCTCAGCCATCGTTAC
14154511 GGTCTGTATCAC
66 GGTCTGTATCAC
14154523 CAGCTCAAGG
Statistics
Matches: 169, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
108 5 0.03
109 115 0.68
110 49 0.29
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (109 bp):
TCACGATGCTGCTCACACAAGCTGTAGAGAATCTGCAACAGATGCAGGATCTCAGCCATCGTTAC
GGTCTGTATCACTGGTATATAGTACCTACTAAATAATCATCGGG
Found at i:14154612 original size:40 final size:40
Alignment explanation
Indices: 14154560--14154641 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
14154550 ATACAAGGCC
* * *
14154560 TGCTAGGCACAAAGCCTGATAAACACACTGGCACAAAGCT
1 TGCTAGGCACAAAGCCCGATAAACACACTAGCACAAAACT
* *
14154600 TGCTAGGTACAAAGCCCGATAAATACACTAGCACAAAACT
1 TGCTAGGCACAAAGCCCGATAAACACACTAGCACAAAACT
14154640 TG
1 TG
14154642 ATATTCACGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.39, C:0.26, G:0.18, T:0.17
Consensus pattern (40 bp):
TGCTAGGCACAAAGCCCGATAAACACACTAGCACAAAACT
Found at i:14154660 original size:9 final size:9
Alignment explanation
Indices: 14154646--14154675 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14154636 AACTTGATAT
14154646 TCACGTACA
1 TCACGTACA
14154655 TCACGTACA
1 TCACGTACA
14154664 TCACGTAC-
1 TCACGTACA
14154672 TCAC
1 TCAC
14154676 AATATTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.30, C:0.37, G:0.10, T:0.23
Consensus pattern (9 bp):
TCACGTACA
Found at i:14161290 original size:61 final size:61
Alignment explanation
Indices: 14161207--14161356 Score: 156
Period size: 61 Copynumber: 2.5 Consensus size: 61
14161197 CATTATTTAC
* * * * * *
14161207 ATCCAATTCTCGTCACAAAGGCTTTCTTGTCCAGAATTGTGCCACAAAAGCATTCCTTAAT
1 ATCCAATACTCGCCACAAAGGCTTTCCTGGCAAAAATTGTGCCACAAAAGCATTCCTTAAT
* * * * *
14161268 ATCCAATACTCGCCATAAAGGCTTTCCTGGCAAAAATTGTGTCAGAAAGGCATTCGTTAAT
1 ATCCAATACTCGCCACAAAGGCTTTCCTGGCAAAAATTGTGCCACAAAAGCATTCCTTAAT
* * * * *
14161329 ATCCATTAATCACCACCAAGACTTTCCT
1 ATCCAATACTCGCCACAAAGGCTTTCCT
14161357 ATCCTGGTGA
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
61 72 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (61 bp):
ATCCAATACTCGCCACAAAGGCTTTCCTGGCAAAAATTGTGCCACAAAAGCATTCCTTAAT
Found at i:14163681 original size:19 final size:19
Alignment explanation
Indices: 14163657--14163700 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14163647 TGACGTATGT
*
14163657 TAGCTAGAGGACACTTATA
1 TAGCTAGAAGACACTTATA
*
14163676 TAGCTAGAAGACGCTTATA
1 TAGCTAGAAGACACTTATA
*
14163695 TGGCTA
1 TAGCTA
14163701 CATTACATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (19 bp):
TAGCTAGAAGACACTTATA
Found at i:14169860 original size:18 final size:18
Alignment explanation
Indices: 14169822--14169860 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14169812 CCTATAAATA
*
14169822 ATATTACTAGCAACATTT
1 ATATTACTAACAACATTT
14169840 ATATTACTAAC-ACATTCT
1 ATATTACTAACAACATT-T
14169858 ATA
1 ATA
14169861 CATGCCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (18 bp):
ATATTACTAACAACATTT
Found at i:14180465 original size:21 final size:21
Alignment explanation
Indices: 14180424--14180472 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
14180414 TGGCTGATTG
*
14180424 ATTTGATTTGTTTAGTCATTT-
1 ATTT-ATTTATTTAGTCATTTA
*
14180445 ATTTATTTATTTCAGTTATTTA
1 ATTTATTTATTT-AGTCATTTA
14180467 ATTTAT
1 ATTTAT
14180473 AATATTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.29
21 11 0.46
22 6 0.25
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.63
Consensus pattern (21 bp):
ATTTATTTATTTAGTCATTTA
Found at i:14185827 original size:34 final size:34
Alignment explanation
Indices: 14185786--14185854 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
14185776 ACACGGTTAA
*
14185786 CCATCCAGCAGACTAG-ATGCTCGTATGAGCTAAT
1 CCATCCAGCACAC-AGAATGCTCGTATGAGCTAAT
* *
14185820 CCATCCAGTACACCGAATGCTCGTATGAGCTAAT
1 CCATCCAGCACACAGAATGCTCGTATGAGCTAAT
14185854 C
1 C
14185855 AATTTAGCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 1 0.03
34 30 0.97
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (34 bp):
CCATCCAGCACACAGAATGCTCGTATGAGCTAAT
Found at i:14196414 original size:21 final size:22
Alignment explanation
Indices: 14196371--14196414 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
14196361 CAAGGTCTTT
14196371 AATGAAATACTCTAAAAAGACA
1 AATGAAATACTCTAAAAAGACA
* * *
14196393 AATGCAATA-TCTTAAAATACA
1 AATGAAATACTCTAAAAAGACA
14196414 A
1 A
14196415 CTAAACTCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.23
Consensus pattern (22 bp):
AATGAAATACTCTAAAAAGACA
Found at i:14198714 original size:29 final size:27
Alignment explanation
Indices: 14198651--14198737 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
14198641 GTACAAATGA
*
14198651 GCCCACACGCCCGTGTGTGCCCGTGTG
1 GCCCACACGCCTGTGTGTGCCCGTGTG
* * *
14198678 GCCTACACGCTTGTGTGTGCCTGTGTG
1 GCCCACACGCCTGTGTGTGCCCGTGTG
* * *
14198705 GCCCACACACCCGTGTGTGCCCATGTG
1 GCCCACACGCCTGTGTGTGCCCGTGTG
*
14198732 GTCCAC
1 GCCCAC
14198738 TCGGCCCAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.10, C:0.37, G:0.30, T:0.23
Consensus pattern (27 bp):
GCCCACACGCCTGTGTGTGCCCGTGTG
Found at i:14203944 original size:16 final size:16
Alignment explanation
Indices: 14203923--14203956 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
14203913 GGAAATCAAT
14203923 CAATTTTT-TGAAAGCC
1 CAATTTTTATGAAA-CC
14203939 CAATTTTTATGAAACC
1 CAATTTTTATGAAACC
14203955 CA
1 CA
14203957 TAATCCACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (16 bp):
CAATTTTTATGAAACC
Found at i:14216032 original size:41 final size:40
Alignment explanation
Indices: 14215995--14216102 Score: 153
Period size: 41 Copynumber: 2.6 Consensus size: 40
14215985 ACCGAAGTGT
*
14215995 AAACAGGGCCACGTATATGCAATTCAGGGGTATCGAAGTAC
1 AAACAGGG-CACGTATGTGCAATTCAGGGGTATCGAAGTAC
**
14216036 AAGTAGAGGCACGTATGTGCAATTCAGGGGTATCGAAGTAC
1 AAACAG-GGCACGTATGTGCAATTCAGGGGTATCGAAGTAC
*
14216077 AAACAGGGGCACATATGTGCAATTCA
1 AAACA-GGGCACGTATGTGCAATTCA
14216103 TAGAATAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
41 56 0.95
42 3 0.05
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (40 bp):
AAACAGGGCACGTATGTGCAATTCAGGGGTATCGAAGTAC
Found at i:14225841 original size:40 final size:39
Alignment explanation
Indices: 14225757--14225940 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
14225747 TTGAATGATG
* * * *
14225757 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
14225797 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
14225837 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
14225875 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
14225916 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
14225941 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14225892 original size:78 final size:80
Alignment explanation
Indices: 14225757--14225940 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 80
14225747 TTGAATGATG
*
14225757 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14225821 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
14225836 TTCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
14225898 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
14225915 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
14225941 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 57 0.63
79 8 0.09
80 24 0.27
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:14230076 original size:30 final size:31
Alignment explanation
Indices: 14230021--14230088 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
14230011 ACCCTTAAAA
** * **
14230021 TATTTACACTATTGGTCCTTCAAATTTTTCG
1 TATTTACACTATTAATCCCTCAAATTTTAAG
14230052 TATTTACACT-TTAATCCCTCAAATTTTAAG
1 TATTTACACTATTAATCCCTCAAATTTTAAG
14230082 TATTTAC
1 TATTTAC
14230089 TCTTAGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTAAG
Found at i:14234599 original size:15 final size:15
Alignment explanation
Indices: 14234579--14234612 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
14234569 AGGCAGCAAT
14234579 AGAAGAAAAAAATAG
1 AGAAGAAAAAAATAG
*
14234594 AGAAGAAAAAAATTG
1 AGAAGAAAAAAATAG
14234609 AGAA
1 AGAA
14234613 AGTAAGTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (15 bp):
AGAAGAAAAAAATAG
Found at i:14239392 original size:28 final size:28
Alignment explanation
Indices: 14239353--14239414 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
14239343 TACGCCAGAC
14239353 TAAT-TTACACGATGTTTATTGCCAATA
1 TAATCTTACACGATGTTTATTGCCAATA
14239380 TAATCTTACACGATGTTTATTGCCAATA
1 TAATCTTACACGATGTTTATTGCCAATA
*
14239408 TTATCTT
1 TAATCTT
14239415 TGAGATTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.12
28 29 0.88
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.44
Consensus pattern (28 bp):
TAATCTTACACGATGTTTATTGCCAATA
Found at i:14241608 original size:36 final size:36
Alignment explanation
Indices: 14241512--14241594 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
14241502 ATTATTAAAT
*
14241512 TAATATTAGAATAATAATTTATTAATATTATTACATGATAA
1 TAATATT--AATAAT-ATTAATTAA-A-TATTACATGATAA
* *
14241553 TAATATTAATAATATTAATTAAATATTACATTATAG
1 TAATATTAATAATATTAATTAAATATTACATGATAA
14241589 TAATAT
1 TAATAT
14241595 AAAATTAGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
36 17 0.44
37 1 0.03
38 8 0.21
39 6 0.15
41 7 0.18
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (36 bp):
TAATATTAATAATATTAATTAAATATTACATGATAA
Found at i:14241758 original size:19 final size:17
Alignment explanation
Indices: 14241734--14241776 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
14241724 TTCAATTAAA
14241734 TAAATATAATTCTTATATG
1 TAAATATAATT-TTAT-TG
* *
14241753 TAAATATGATTTTATTT
1 TAAATATAATTTTATTG
14241770 TAAATAT
1 TAAATAT
14241777 GATAATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 4 0.18
19 10 0.45
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (17 bp):
TAAATATAATTTTATTG
Found at i:14241775 original size:17 final size:19
Alignment explanation
Indices: 14241734--14241779 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
14241724 TTCAATTAAA
*
14241734 TAAATATAATTCTTATATG
1 TAAATATGATTCTTATATG
*
14241753 TAAATATGATT-TTAT-TT
1 TAAATATGATTCTTATATG
14241770 TAAATATGAT
1 TAAATATGAT
14241780 AATAATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.44
18 4 0.16
19 10 0.40
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (19 bp):
TAAATATGATTCTTATATG
Found at i:14242787 original size:22 final size:24
Alignment explanation
Indices: 14242751--14242796 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
14242741 ATTGTCATTT
* *
14242751 AATTAGTAAATATAT-TTTTTTAA
1 AATTAGTAAAAATATATTATTTAA
14242774 AATTA-TAAAAATATATTATTTAA
1 AATTAGTAAAAATATATTATTTAA
14242797 CATGACATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
AATTAGTAAAAATATATTATTTAA
Found at i:14242990 original size:31 final size:30
Alignment explanation
Indices: 14242930--14242994 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 30
14242920 TACGTGATAA
14242930 TAATAAAAATAATATTAATTAAATATTAAT
1 TAATAAAAATAATATTAATTAAATATTAAT
*
14242960 TAATAAAATATATTATTAATATAAAT-TTAAT
1 TAATAAAA-ATAATATTAAT-TAAATATTAAT
14242991 TAAT
1 TAAT
14242995 TTGGTTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 8 0.25
31 19 0.59
32 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (30 bp):
TAATAAAAATAATATTAATTAAATATTAAT
Found at i:14244095 original size:26 final size:27
Alignment explanation
Indices: 14244066--14244123 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
14244056 ATTCTTAGGT
**
14244066 AAATATA-TATTTTTAAAAATTTAAAA
1 AAATATATTATTTAAAAAAATTTAAAA
14244092 AAATATATTATTTAAAAAAATTTAAAA
1 AAATATATTATTTAAAAAAATTTAAAA
14244119 AAATA
1 AAATA
14244124 AACATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
AAATATATTATTTAAAAAAATTTAAAA
Found at i:14248834 original size:49 final size:49
Alignment explanation
Indices: 14248762--14248861 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
14248752 GCAGGAAAGA
14248762 AAGCATATATAACATGCATATACAAGATAAAAACCATCCATTCCAACTC
1 AAGCATATATAACATGCATATACAAGATAAAAACCATCCATTCCAACTC
*
14248811 AAGCATATATAACATGCATATACAAGATAAAAACCATCCATTCCAATTC
1 AAGCATATATAACATGCATATACAAGATAAAAACCATCCATTCCAACTC
14248860 AA
1 AA
14248862 ACCTCTTTCG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (49 bp):
AAGCATATATAACATGCATATACAAGATAAAAACCATCCATTCCAACTC
Found at i:14253425 original size:49 final size:48
Alignment explanation
Indices: 14253353--14253480 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 48
14253343 ATAACACACC
*
14253353 AATATTGTGGACAAGCCACCAGATAGTGCAATCACACTGCCAGAA-ATAG
1 AATATTGTGGACAAGCCACCAGATAGTGCAAT-ACACTGCCA-AATACAG
* * ** *
14253402 AATATTGTGGTCAAGCCACCAGATAATGCAAATTTACTGCTAAATACAG
1 AATATTGTGGACAAGCCACCAGATAGTGC-AATACACTGCCAAATACAG
* *
14253451 AAAATTATGGACAAGCCACCAGATAGTGCA
1 AATATTGTGGACAAGCCACCAGATAGTGCA
14253481 TATTTACTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 3 0.04
49 61 0.91
50 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (48 bp):
AATATTGTGGACAAGCCACCAGATAGTGCAATACACTGCCAAATACAG
Found at i:14258027 original size:18 final size:18
Alignment explanation
Indices: 14258004--14258043 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
14257994 CTATAGACAT
14258004 CTAGTACCTTAGGGAAGG
1 CTAGTACCTTAGGGAAGG
14258022 CTAGTACCTTAGGGAAGG
1 CTAGTACCTTAGGGAAGG
14258040 -TAGT
1 CTAGT
14258044 TGTAACACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.25
Consensus pattern (18 bp):
CTAGTACCTTAGGGAAGG
Found at i:14266121 original size:15 final size:15
Alignment explanation
Indices: 14266077--14266121 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
14266067 TTGGTCGAAA
*
14266077 AATTTTATTTTTTAT
1 AATTTTATTTTATAT
*
14266092 AGAATTTATTATTATAT
1 A-ATTTTATT-TTATAT
14266109 AATTTTATTTTAT
1 AATTTTATTTTAT
14266122 TTTTGTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 5 0.20
16 14 0.56
17 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (15 bp):
AATTTTATTTTATAT
Found at i:14268023 original size:17 final size:17
Alignment explanation
Indices: 14268001--14268033 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14267991 GTTAATGCAC
*
14268001 ATTGTCTTTGCATTTTT
1 ATTGTCATTGCATTTTT
14268018 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
14268034 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.12, T:0.61
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:14271001 original size:26 final size:26
Alignment explanation
Indices: 14270967--14271047 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
14270957 ACTCATGGTT
* *
14270967 CTCTGACCAACTTAAACTCAAGGGCC
1 CTCTAACCAACTTAAACTCAAGGGAC
14270993 CTCTAACCAACTTAAACTCAAGGGAC
1 CTCTAACCAACTTAAACTCAAGGGAC
* * *
14271019 CTCCAACCAACTCAAACTCAAGGGTC
1 CTCTAACCAACTTAAACTCAAGGGAC
14271045 CTC
1 CTC
14271048 AGACCCACTC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.19
Consensus pattern (26 bp):
CTCTAACCAACTTAAACTCAAGGGAC
Found at i:14271057 original size:26 final size:25
Alignment explanation
Indices: 14270972--14271059 Score: 104
Period size: 26 Copynumber: 3.4 Consensus size: 25
14270962 TGGTTCTCTG
* *
14270972 ACCAACTTAAACTCAAGGGCCCTCTA
1 ACCAACTCAAACTCAAGGGACCTC-A
*
14270998 ACCAACTTAAACTCAAGGGACCTCCA
1 ACCAACTCAAACTCAAGGGACCT-CA
*
14271024 ACCAACTCAAACTCAAGGGTCCTCA
1 ACCAACTCAAACTCAAGGGACCTCA
*
14271049 GACCCACTCAA
1 -ACCAACTCAA
14271060 TCTCGATGGG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
25 2 0.04
26 53 0.95
27 1 0.02
ACGTcount: A:0.36, C:0.36, G:0.11, T:0.16
Consensus pattern (25 bp):
ACCAACTCAAACTCAAGGGACCTCA
Found at i:14277186 original size:21 final size:20
Alignment explanation
Indices: 14277146--14277187 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
14277136 TTTTTTAGAT
*
14277146 AATTAGATTTATTTTCTTTA
1 AATTAGATTTATTTTATTTA
14277166 AATTAAGATTT-TTTTAATTTA
1 AATT-AGATTTATTTT-ATTTA
14277187 A
1 A
14277188 TGTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
AATTAGATTTATTTTATTTA
Found at i:14278948 original size:12 final size:12
Alignment explanation
Indices: 14278933--14278977 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
14278923 TATTTATTTT
*
14278933 ATAATTTTTGTG
1 ATAATCTTTGTG
14278945 ATAATCTTTGTG
1 ATAATCTTTGTG
14278957 ATAATCTTTGTG
1 ATAATCTTTGTG
*
14278969 ATATTCTTT
1 ATAATCTTT
14278978 TGTCATCATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.24, C:0.07, G:0.13, T:0.56
Consensus pattern (12 bp):
ATAATCTTTGTG
Found at i:14281342 original size:26 final size:26
Alignment explanation
Indices: 14281313--14281366 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
14281303 AAATACCTAT
14281313 TTGTGTTTTTATAAAAAAAATCATGA
1 TTGTGTTTTTATAAAAAAAATCATGA
14281339 TTGTGTTTTTATAAAAAAAATCATGA
1 TTGTGTTTTTATAAAAAAAATCATGA
14281365 TT
1 TT
14281367 AAAGTTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.44
Consensus pattern (26 bp):
TTGTGTTTTTATAAAAAAAATCATGA
Found at i:14285901 original size:20 final size:19
Alignment explanation
Indices: 14285877--14285924 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
14285867 TTTTCAATCC
* *
14285877 AAATTAATTATTTTCATTA
1 AAATTAATTAATTACATTA
* *
14285896 ATAATTATTTAATTACTTTA
1 A-AATTAATTAATTACATTA
14285916 AAATTAATT
1 AAATTAATT
14285925 TTCCAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (19 bp):
AAATTAATTAATTACATTA
Found at i:14287236 original size:13 final size:13
Alignment explanation
Indices: 14287218--14287249 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14287208 TTTAATTTAG
14287218 TTAAATTAATTAA
1 TTAAATTAATTAA
*
14287231 TTAAATTAATTGA
1 TTAAATTAATTAA
14287244 TTAAAT
1 TTAAAT
14287250 AATACTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TTAAATTAATTAA
Found at i:14289980 original size:12 final size:12
Alignment explanation
Indices: 14289963--14289987 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14289953 CCAAAATTCA
14289963 AAACCAATGTCC
1 AAACCAATGTCC
14289975 AAACCAATGTCC
1 AAACCAATGTCC
14289987 A
1 A
14289988 TAGTAAGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.32, G:0.08, T:0.16
Consensus pattern (12 bp):
AAACCAATGTCC
Found at i:14304024 original size:21 final size:21
Alignment explanation
Indices: 14303998--14304051 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
14303988 TTCTTTTGAG
*
14303998 AAGGAAGTTGCTGCTACAGAA
1 AAGGAAGTTGCTGCTAAAGAA
* *
14304019 GAGGAAGTTGTTGCTAAAGAA
1 AAGGAAGTTGCTGCTAAAGAA
*
14304040 AAAGAAGTTGCT
1 AAGGAAGTTGCT
14304052 AAAAATGAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (21 bp):
AAGGAAGTTGCTGCTAAAGAA
Found at i:14304525 original size:19 final size:19
Alignment explanation
Indices: 14304485--14304525 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14304475 ATAAGTAAAC
* **
14304485 ATTGTCATTGCATTTTTTT
1 ATTGTCATTACATTTTCAT
14304504 ATTGTCATTACATTTTCAT
1 ATTGTCATTACATTTTCAT
14304523 ATT
1 ATT
14304526 AGTGCATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.22, C:0.12, G:0.07, T:0.59
Consensus pattern (19 bp):
ATTGTCATTACATTTTCAT
Found at i:14307764 original size:11 final size:11
Alignment explanation
Indices: 14307748--14307772 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14307738 TTTTTGTAAA
14307748 TAAAACAAAAT
1 TAAAACAAAAT
14307759 TAAAACAAAAT
1 TAAAACAAAAT
14307770 TAA
1 TAA
14307773 GTAAAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (11 bp):
TAAAACAAAAT
Found at i:14308725 original size:21 final size:21
Alignment explanation
Indices: 14308696--14308736 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14308686 CGGGTAGATC
* *
14308696 AGCTTTTACGAGCTTCTGTTA
1 AGCTCTTACAAGCTTCTGTTA
14308717 AGCTCTTACAAGCTTCTGTT
1 AGCTCTTACAAGCTTCTGTT
14308737 GGCGTACTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (21 bp):
AGCTCTTACAAGCTTCTGTTA
Found at i:14309951 original size:20 final size:21
Alignment explanation
Indices: 14309926--14309964 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
14309916 CCCTACAATC
14309926 TAAAATTTTCAAAT-TTTTCT
1 TAAAATTTTCAAATGTTTTCT
14309946 TAAAATTTTCAAATGTTTT
1 TAAAATTTTCAAATGTTTT
14309965 TGATTTAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (21 bp):
TAAAATTTTCAAATGTTTTCT
Found at i:14314593 original size:31 final size:31
Alignment explanation
Indices: 14314555--14314613 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
14314545 TACTCTAGTC
*
14314555 AAATTAAATTTTGTAGACAATTTATATATTG
1 AAATTAAATTTTGTAAACAATTTATATATTG
14314586 AAATTAAATTTTGTAAACAATTTATATA
1 AAATTAAATTTTGTAAACAATTTATATA
14314614 AAAATTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (31 bp):
AAATTAAATTTTGTAAACAATTTATATATTG
Found at i:14315594 original size:15 final size:15
Alignment explanation
Indices: 14315574--14315605 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14315564 TACAATACTT
*
14315574 AAAAAGAAAAGGAAA
1 AAAAAGAAAAAGAAA
14315589 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
14315604 AA
1 AA
14315606 TATTGCAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGAAA
Found at i:14318060 original size:36 final size:36
Alignment explanation
Indices: 14318013--14318086 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
14318003 TAGTTTTGAT
14318013 TTGGTTCTTTGCTTGGTTTGATGGTTTTATGATCTG
1 TTGGTTCTTTGCTTGGTTTGATGGTTTTATGATCTG
14318049 TTGGTTCTTTGCTTGGTTTGATGGTTTTATGATCTG
1 TTGGTTCTTTGCTTGGTTTGATGGTTTTATGATCTG
14318085 TT
1 TT
14318087 TTAGGAGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.08, C:0.08, G:0.27, T:0.57
Consensus pattern (36 bp):
TTGGTTCTTTGCTTGGTTTGATGGTTTTATGATCTG
Found at i:14318087 original size:20 final size:20
Alignment explanation
Indices: 14318028--14318087 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
14318018 TCTTTGCTTG
14318028 GTTTGATGGTTTTATGATCT
1 GTTTGATGGTTTTATGATCT
*
14318048 G--T--TGGTTCTT-TGCT-T
1 GTTTGATGGTT-TTATGATCT
14318063 GGTTTGATGGTTTTATGATCT
1 -GTTTGATGGTTTTATGATCT
14318084 GTTT
1 GTTT
14318088 TAGGAGAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 16
0.62 0.04 0.33
Matches are distributed among these distances:
15 1 0.03
16 9 0.30
17 2 0.07
18 2 0.07
19 2 0.07
20 13 0.43
21 1 0.03
ACGTcount: A:0.10, C:0.07, G:0.27, T:0.57
Consensus pattern (20 bp):
GTTTGATGGTTTTATGATCT
Done.