Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 53 of 172
Found at i:14323026 original size:51 final size:51
Alignment explanation
Indices: 14322958--14323297 Score: 316
Period size: 51 Copynumber: 6.7 Consensus size: 51
14322948 TACCCAGTTG
* * *
14322958 ACATAGTAGCTTACACATAGTACTACACATGTGACCATTTTCATCCGATAC
1 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTCTCATCCGATAC
* * * ** *
14323009 ACGTAGTAGCTTGCACATAGTACTACACATGTGATCGAAGCT-ATCCGGTAC
1 ACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATTCTCATCCGATAC
* * * *
14323060 GCATAGTAGCCTGCACATAGTACTACACATGCGA-C-TTATCATTCCGGTAC
1 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTCTCA-TCCGATAC
* *
14323110 ACATAGTAGCCTGCACAT-GATACTACACACGTGACCATTTTCATCCGATAC
1 ACATAGTAGCCTGCACATAG-TACTACACATGTGACCATTCTCATCCGATAC
* * * * ** * *
14323161 ACGTAGTAGCCTCCACATAGTACTACACACGTGATCGAAGCT-ATTCGGTAC
1 ACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATTCTCATCCGATAC
* * * * *
14323212 GCATAGTAGCCTACACATAGTACTACACATGCGACC--TGTCATTCCGATAT
1 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTCTCA-TCCGATAC
* *
14323262 ACGTAGTAGCCTGCACATAGTACTACACACGTGACC
1 ACATAGTAGCCTGCACATAGTACTACACATGTGACC
14323298 TAGCAACTTC
Statistics
Matches: 235, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
48 2 0.01
49 3 0.01
50 74 0.31
51 144 0.61
52 12 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (51 bp):
ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTCTCATCCGATAC
Found at i:14323137 original size:101 final size:102
Alignment explanation
Indices: 14322958--14323298 Score: 327
Period size: 101 Copynumber: 3.4 Consensus size: 102
14322948 TACCCAGTTG
* * * * *
14322958 ACATAGTAGCTTACACATAGTACTACACATGTGACCATTTTCA-TCCGATACACGTAGTAGCTTG
1 ACATAGTAGCCTACACATAGTACTACACATGTGACC-TTATCATTCCGGTACACATAGTAGCCTG
* *
14323022 CACATAGTACTACACATGTGATCGAAGCT-ATCCGGTAC
65 CACATAGTACTACACATGTGA-CCAAGCTCATCCGATAC
* * *
14323060 GCATAGTAGCCTGCACATAGTACTACACATGCGA-CTTATCATTCCGGTACACATAGTAGCCTGC
1 ACATAGTAGCCTACACATAGTACTACACATGTGACCTTATCATTCCGGTACACATAGTAGCCTGC
* ***
14323124 ACAT-GATACTACACACGTGACCATTTTCATCCGATAC
66 ACATAG-TACTACACATGTGACCAAGCTCATCCGATAC
* * * * ** * * *
14323161 ACGTAGTAGCCTCCACATAGTACTACACACGTGATCGAAGCTATT-CGGTACGCATAGTAGCCTA
1 ACATAGTAGCCTACACATAGTACTACACATGTGACCTTATC-ATTCCGGTACACATAGTAGCCTG
* * *
14323225 CACATAGTACTACACATGCGACC-TG-TCATTCCGATAT
65 CACATAGTACTACACATGTGACCAAGCTCA-TCCGATAC
* * *
14323262 ACGTAGTAGCCTGCACATAGTACTACACACGTGACCT
1 ACATAGTAGCCTACACATAGTACTACACATGTGACCT
14323299 AGCAACTTCA
Statistics
Matches: 201, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
100 12 0.06
101 116 0.58
102 69 0.34
103 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (102 bp):
ACATAGTAGCCTACACATAGTACTACACATGTGACCTTATCATTCCGGTACACATAGTAGCCTGC
ACATAGTACTACACATGTGACCAAGCTCATCCGATAC
Found at i:14323234 original size:152 final size:152
Alignment explanation
Indices: 14322958--14323297 Score: 547
Period size: 152 Copynumber: 2.2 Consensus size: 152
14322948 TACCCAGTTG
* * * * *
14322958 ACATAGTAGCTTACACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCTTGC
1 ACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATACACGTAGTAGCCTCC
* *
14323023 ACATAGTACTACACATGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACAC
66 ACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTACACATAGTACTACAC
* *
14323088 ATGCGACTTATCATTCCGGTAC
131 ATGCGACCTATCATTCCGATAC
14323110 ACATAGTAGCCTGCACAT-GATACTACACACGTGACCATTTTCATCCGATACACGTAGTAGCCTC
1 ACATAGTAGCCTGCACATAG-TACTACACACGTGACCATTTTCATCCGATACACGTAGTAGCCTC
*
14323174 CACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATAGTAGCCTACACATAGTACTACA
65 CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTACACATAGTACTACA
* *
14323239 CATGCGACCTGTCATTCCGATAT
130 CATGCGACCTATCATTCCGATAC
*
14323262 ACGTAGTAGCCTGCACATAGTACTACACACGTGACC
1 ACATAGTAGCCTGCACATAGTACTACACACGTGACC
14323298 TAGCAACTTC
Statistics
Matches: 173, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
151 1 0.01
152 171 0.99
153 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (152 bp):
ACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATACACGTAGTAGCCTCC
ACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTACACATAGTACTACAC
ATGCGACCTATCATTCCGATAC
Found at i:14326480 original size:13 final size:12
Alignment explanation
Indices: 14326462--14326508 Score: 58
Period size: 13 Copynumber: 3.7 Consensus size: 12
14326452 GTTTTAAAAC
14326462 ATGTTTTCAAGTT
1 ATGTTTT-AAGTT
14326475 ATGTTTTTAAGTT
1 ATG-TTTTAAGTT
*
14326488 ATGTTTTAAATAT
1 ATGTTTTAAGT-T
14326501 ATGTTTTA
1 ATGTTTTA
14326509 TGTGTTCTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 7 0.23
13 20 0.65
14 4 0.13
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (12 bp):
ATGTTTTAAGTT
Found at i:14330501 original size:6 final size:6
Alignment explanation
Indices: 14330490--14330594 Score: 210
Period size: 6 Copynumber: 17.5 Consensus size: 6
14330480 GAATTAATAT
14330490 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
14330538 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
14330586 TGTATA TGT
1 TGTATA TGT
14330595 GGGTATAATA
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 99 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTATA
Found at i:14331257 original size:22 final size:21
Alignment explanation
Indices: 14331231--14331283 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
14331221 TTTGGAATTT
14331231 TAATAATAATAAGAAAAT-AAA
1 TAATAATAATAAG-AAATCAAA
*
14331252 TAAATAATAATGAGAAATCAAA
1 T-AATAATAATAAGAAATCAAA
14331274 TAATAA-AATA
1 TAATAATAATA
14331284 TGTCACATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 3 0.11
21 10 0.36
22 15 0.54
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.25
Consensus pattern (21 bp):
TAATAATAATAAGAAATCAAA
Found at i:14331932 original size:57 final size:57
Alignment explanation
Indices: 14331842--14331953 Score: 188
Period size: 57 Copynumber: 2.0 Consensus size: 57
14331832 TTTTCCATAA
* *
14331842 CATGTGTTAAATAAGCCTATTTAGTGTCGTTTTTAACCCTAGGTTAGTTGCCATCCT
1 CATGTGTTAAATAAACCTATTTAGTGTCATTTTTAACCCTAGGTTAGTTGCCATCCT
* *
14331899 CATGTGTTAAATAAACCTATTTAGTGTCATTTTTAACCTTAGGTTAGTTTCCATC
1 CATGTGTTAAATAAACCTATTTAGTGTCATTTTTAACCCTAGGTTAGTTGCCATC
14331954 TTCGTGCTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (57 bp):
CATGTGTTAAATAAACCTATTTAGTGTCATTTTTAACCCTAGGTTAGTTGCCATCCT
Found at i:14333497 original size:48 final size:48
Alignment explanation
Indices: 14333426--14333581 Score: 278
Period size: 48 Copynumber: 3.2 Consensus size: 48
14333416 AGGCACATAT
14333426 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTTTTAAGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTTTTAAGATACAAGG
* *
14333474 GTGGCATGGACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTTTTAAGATACAAGG
14333522 GTGGCACGGACTGTGTGCAGGCCACCAATATT-TTGTTAAGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTT-TTAAGATACAAGG
14333570 GTGGCACGGACT
1 GTGGCACGGACT
14333582 AGGGGTAATG
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
47 1 0.01
48 102 0.99
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GTGGCACGGACTGTGTGCAGGCCACCAATATTCTTTTAAGATACAAGG
Found at i:14334091 original size:18 final size:18
Alignment explanation
Indices: 14334037--14334091 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
14334027 CCTTTATATA
*
14334037 TTTGTCTTT-TTTTCTTT
1 TTTGTATTTATTTTCTTT
14334054 TTT-TCATTTATTTT-TGTT
1 TTTGT-ATTTATTTTCT-TT
*
14334072 TTTGTTTTTATTTTCTTT
1 TTTGTATTTATTTTCTTT
14334090 TT
1 TT
14334092 CTTACATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 1 0.03
17 7 0.23
18 21 0.68
19 2 0.06
ACGTcount: A:0.05, C:0.07, G:0.05, T:0.82
Consensus pattern (18 bp):
TTTGTATTTATTTTCTTT
Found at i:14338014 original size:27 final size:23
Alignment explanation
Indices: 14337960--14338004 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14337950 TGCTAAAACA
14337960 TGTAGGTTATGGATAAACCACCT
1 TGTAGGTTATGGATAAACCACCT
*
14337983 TGTAGGTTGTGGATAAACCACC
1 TGTAGGTTATGGATAAACCACC
14338005 AAATTTGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (23 bp):
TGTAGGTTATGGATAAACCACCT
Found at i:14338845 original size:11 final size:11
Alignment explanation
Indices: 14338831--14338872 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
14338821 AAAGATGATT
14338831 AAAGAAAAGAG
1 AAAGAAAAGAG
14338842 AAAGAAAAGAG
1 AAAGAAAAGAG
14338853 -AAGAAGAAGTAG
1 AAAGAA-AAG-AG
14338865 TAAAGAAA
1 -AAAGAAA
14338873 TGTGTTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 5 0.19
11 14 0.52
12 2 0.07
13 1 0.04
14 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.26, T:0.05
Consensus pattern (11 bp):
AAAGAAAAGAG
Found at i:14338946 original size:22 final size:22
Alignment explanation
Indices: 14338918--14338979 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
14338908 AGTTTTAACG
14338918 TGGTGGTGCTACGGTGGTTGAA
1 TGGTGGTGCTACGGTGGTTGAA
*
14338940 TGGTGGTGCTACGGTGGTTGTA
1 TGGTGGTGCTACGGTGGTTGAA
* *
14338962 TGG-GGTGGTTCGGTGGTT
1 TGGTGGTGCTACGGTGGTT
14338980 TTTGGGTGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 13 0.35
22 24 0.65
ACGTcount: A:0.08, C:0.08, G:0.48, T:0.35
Consensus pattern (22 bp):
TGGTGGTGCTACGGTGGTTGAA
Found at i:14341081 original size:33 final size:33
Alignment explanation
Indices: 14341020--14341114 Score: 118
Period size: 33 Copynumber: 2.9 Consensus size: 33
14341010 ACTTACCCTG
* * * *
14341020 TGTTTACTATCCTAGCAGACTGTCTCTGTTCTA
1 TGTTTACTGTCCCAGCGGACTGTATCTGTTCTA
* *
14341053 TGTTTACTGTCCCAGCGGACTATATCTGTTCTG
1 TGTTTACTGTCCCAGCGGACTGTATCTGTTCTA
* *
14341086 TGTTTACTGTCCCAACGGATTGTATCTGT
1 TGTTTACTGTCCCAGCGGACTGTATCTGT
14341115 GGATGCCATG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.41
Consensus pattern (33 bp):
TGTTTACTGTCCCAGCGGACTGTATCTGTTCTA
Found at i:14345638 original size:26 final size:26
Alignment explanation
Indices: 14345604--14345653 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14345594 ATCTTTAAAT
* *
14345604 TAATTTCACAAAATTTCAGAAAATCG
1 TAATATCACAAAATTCCAGAAAATCG
14345630 TAATATCACAAAATTCCAGAAAAT
1 TAATATCACAAAATTCCAGAAAAT
14345654 TAGTTCATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (26 bp):
TAATATCACAAAATTCCAGAAAATCG
Found at i:14351097 original size:163 final size:163
Alignment explanation
Indices: 14350827--14351149 Score: 538
Period size: 163 Copynumber: 2.0 Consensus size: 163
14350817 AAGCCTAAAG
* *
14350827 TATTTGATGTCATAGAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAGAAGATTA
1 TATTTGATGTCACAGAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAAAAGATTA
* *
14350892 CGATTTGATCATTGACTATCATCTAGGAAAAGCTAATGTTGTTGTTGATGCTTTAAGTAGAAAAT
66 CGATTTGATCATCGACTATCATCTAGGAAAAGCTAATGTTGTTGCTGATGCTTTAAGTAGAAAAT
*
14350957 CTTTGTGTACATTGAGAGCTTTGAACACTCAGT
131 ATTTGTGTACATTGAGAGCTTTGAACACTCAGT
* * *
14350990 TATTTGATGTCACAGAAAGAACTGAATTTGAGACAACGTAGATGGTTTGAGTTGTTAAAAGATTA
1 TATTTGATGTCACAGAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAAAAGATTA
14351055 CGATTTGATCATCGACTATCATCTAGGAAAAGCTAATGTTGTTGCTGATGCTTTAAGTAGAAAAT
66 CGATTTGATCATCGACTATCATCTAGGAAAAGCTAATGTTGTTGCTGATGCTTTAAGTAGAAAAT
* * * *
14351120 ATTTTTTTACCTTGAGAGCTTTGAATACTC
131 ATTTGTGTACATTGAGAGCTTTGAACACTC
14351150 GATTGACATT
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
163 148 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (163 bp):
TATTTGATGTCACAGAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAAAAGATTA
CGATTTGATCATCGACTATCATCTAGGAAAAGCTAATGTTGTTGCTGATGCTTTAAGTAGAAAAT
ATTTGTGTACATTGAGAGCTTTGAACACTCAGT
Found at i:14355441 original size:22 final size:22
Alignment explanation
Indices: 14355413--14355491 Score: 70
Period size: 22 Copynumber: 3.3 Consensus size: 22
14355403 AAATTAATAG
14355413 AATGTGTAAGTACTGAAGATTA
1 AATGTGTAAGTACTGAAGATTA
* *
14355435 AATGTGTTAAATA-TGATAAAATTAATA
1 AATGTG-TAAGTACTG--AAGA-T--TA
14355462 GAATGTGTAAGTACTGAAGATTA
1 -AATGTGTAAGTACTGAAGATTA
14355485 AATGTGT
1 AATGTGT
14355492 TAATATACAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
22 15 0.33
23 7 0.16
24 3 0.07
25 2 0.04
26 3 0.07
27 7 0.16
28 8 0.18
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.34
Consensus pattern (22 bp):
AATGTGTAAGTACTGAAGATTA
Found at i:14355468 original size:50 final size:50
Alignment explanation
Indices: 14355393--14355494 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
14355383 TATTATTTAG
14355393 AAATATGATAAAATTAATAGAATGTGTAAGTACTGAAGATTAAATGTGTT
1 AAATATGATAAAATTAATAGAATGTGTAAGTACTGAAGATTAAATGTGTT
14355443 AAATATGATAAAATTAATAGAATGTGTAAGTACTGAAGATTAAATGTGTT
1 AAATATGATAAAATTAATAGAATGTGTAAGTACTGAAGATTAAATGTGTT
14355493 AA
1 AA
14355495 TATACATATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.47, C:0.02, G:0.18, T:0.33
Consensus pattern (50 bp):
AAATATGATAAAATTAATAGAATGTGTAAGTACTGAAGATTAAATGTGTT
Found at i:14356209 original size:91 final size:91
Alignment explanation
Indices: 14356062--14356269 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 91
14356052 TTGATTTTAG
* *
14356062 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
14356127 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
14356154 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
14356219 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* * *
14356245 CAAATTAATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
14356270 GTTATAATTA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
91 91 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:14356238 original size:26 final size:28
Alignment explanation
Indices: 14356184--14356244 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
14356174 TATTATCAAG
* *
14356184 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
14356212 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
14356238 AATTATA
1 AATTATA
14356245 CAAATTAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:14356244 original size:44 final size:43
Alignment explanation
Indices: 14356102--14356244 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
14356092 GAATTTTATG
* *
14356102 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
14356146 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
14356193 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
14356237 AAATTATA
1 AAATTATA
14356245 CAAATTAATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:14356253 original size:26 final size:29
Alignment explanation
Indices: 14356184--14356256 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 29
14356174 TATTATCAAG
* *
14356184 AATTTTATGAAATT-ATATATTATTATTA
1 AATTATATCAAATTAATATATTATTATTA
**
14356212 AATTATATGTAA-TAATA-ATTATT-TTA
1 AATTATATCAAATTAATATATTATTATTA
14356238 AATTATA-CAAATTAATATA
1 AATTATATCAAATTAATATA
14356257 AGATAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.05
26 15 0.39
27 8 0.21
28 13 0.34
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (29 bp):
AATTATATCAAATTAATATATTATTATTA
Found at i:14356362 original size:59 final size:57
Alignment explanation
Indices: 14356296--14356484 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
14356286 ATTTTATTAA
14356296 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
14356355 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
14356416 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
14356475 ATCATATATT
1 ATCATATATT
14356485 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.20
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:14356393 original size:66 final size:64
Alignment explanation
Indices: 14356323--14356521 Score: 186
Period size: 66 Copynumber: 3.2 Consensus size: 64
14356313 AAATATATTT
14356323 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
14356388 G
64 G
* * * * * **
14356389 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
14356443 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
14356508 G
64 G
*
14356509 AATATTGATTATT
1 AATATTAATTATT
14356522 AAGAATTTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:14356409 original size:120 final size:120
Alignment explanation
Indices: 14356285--14356582 Score: 517
Period size: 120 Copynumber: 2.5 Consensus size: 120
14356275 AATTATTTTA
* * *
14356285 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
14356349 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
14356405 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
14356470 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
14356525 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
14356583 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 161 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:14356425 original size:61 final size:61
Alignment explanation
Indices: 14356358--14356545 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
14356348 TTATAGTATC
14356358 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
14356419 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
14356477 C
61 T
*
14356478 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
14356539 ATATATT
1 ATATATT
14356546 TTAATTAAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.19
60 16 0.17
61 25 0.26
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:14356445 original size:15 final size:15
Alignment explanation
Indices: 14356410--14356461 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14356400 TTAAGAATTT
*
14356410 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14356424 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14356438 TATTTAATAATAAT-
1 TATTTAATTATAATA
14356452 TATGTTAATT
1 TAT-TTAATT
14356462 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14356554 original size:18 final size:17
Alignment explanation
Indices: 14356526--14356560 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14356516 ATTATTAAGA
*
14356526 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14356543 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14356561 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14356815 original size:16 final size:16
Alignment explanation
Indices: 14356794--14356832 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14356784 TTGATTTGCT
*
14356794 ATTACATATCTATTCC
1 ATTACACATCTATTCC
*
14356810 ATTACACCTCTATTCC
1 ATTACACATCTATTCC
14356826 ATTACAC
1 ATTACAC
14356833 CCCTAATCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTACACATCTATTCC
Found at i:14356833 original size:16 final size:16
Alignment explanation
Indices: 14356802--14356863 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 16
14356792 CTATTACATA
* *
14356802 TCTATTCCATTACACC
1 TCTAATCCAATACACC
* *
14356818 TCTATTCCATTACACC
1 TCTAATCCAATACACC
*
14356834 CCTAATCCAATACACC
1 TCTAATCCAATACACC
14356850 TCTAATCCAATACA
1 TCTAATCCAATACA
14356864 GCAAACCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.31
Consensus pattern (16 bp):
TCTAATCCAATACACC
Found at i:14363936 original size:22 final size:23
Alignment explanation
Indices: 14363897--14363946 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
14363887 TAAAAAAAAT
*
14363897 AAAAACACCACAATACAT-TAAGA
1 AAAAACAACACAATACATCTAA-A
*
14363920 AAAAACAACAGAA-ACATCTAAA
1 AAAAACAACACAATACATCTAAA
14363942 AAAAA
1 AAAAA
14363947 TCAAAGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.68, C:0.18, G:0.04, T:0.10
Consensus pattern (23 bp):
AAAAACAACACAATACATCTAAA
Found at i:14365050 original size:25 final size:26
Alignment explanation
Indices: 14364987--14365058 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 26
14364977 CGTTTTGACC
* *
14364987 CACAACTTGTGTGAGCAGACCCATTTT
1 CACAGCTTGTGTGAGCATACCCA-TTT
* * *
14365014 CATAGCTCGTGTGAGCATACCGA-TT
1 CACAGCTTGTGTGAGCATACCCATTT
14365039 CACAGCTTGTGTGAGCATAC
1 CACAGCTTGTGTGAGCATAC
14365059 ATGTACAAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 20 0.53
27 18 0.47
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (26 bp):
CACAGCTTGTGTGAGCATACCCATTT
Found at i:14368655 original size:760 final size:757
Alignment explanation
Indices: 14367478--14369757 Score: 3128
Period size: 752 Copynumber: 3.0 Consensus size: 757
14367468 ACACAGTCGT
* * * * *
14367478 GTGGTGTCGACAGTCCAGTTTTTCAGCTTTCAGCCGTTTGTGATTTTTCTAGTTTTCATTACACA
1 GTGGTGTCGACAGTCCAATTTTTCGGCTTTTAGCCGTTCGTGATTTTTCTAGTTTTCGTTACACA
* * *
14367543 CCTTGGTTTTTTTTATGCGAATCCACCCACGAGGCTTCCAAAACCTAAAAACATCAATTAA-CCA
66 CCTTGGCTTTTTTTATGCGAATCCACTCACGAGGCTTCCAGAACCTAAAAACATCAATTAATCC-
* * * *
14367607 TCTAAATTAGCAATGATTTATTAATTCCAAGTAATACTTATGATTAAAAATGCTAACATACACCT
130 TCCAAATTAGCAATGATTTACTAATTCCAATTAACACTTATGATTAAAAATGCTAACATACACCT
* *
14367672 TACTAAACAAAAATTCTACCCTTTTTTGGGTGTTCGATCACTTACCCAAACGAACAGCCACTACC
195 TACTAAACCAAAATTCTA-CCTTTTTTGGGTGTTCGATCACTTACCCAAACGAACAGCCACCACC
* * * *
14367737 CACACTTAATTTGCTGGTAGGTCACTGAAAGCTTCATGGTTTTCTCCTAATAACAGAAAAGAACC
259 CACACTTAATTTGCTAGTGGGTCACTGAAAGCTTCACGGTCTTCTCCTAATAACAGAAAAGAACC
* * *
14367802 CAATCAAACAATCTTACGTCACAATTACAACCAACCTGAACATAATAATTCTCCATACCAACAAG
324 GAATCAAACAACCTTACGCCACAATTACAACCAACCTGAACATAATAATTCTCCATACCAACAAG
* * *
14367867 GAAATAATTCCACCACTGACAA-AAACACCAAAACCACTTACTAACAAGCTACGACAATCGACTG
389 GAAATAATTCCACCACTGACAACAAACACCACAACCACTTACCAACAAGGTACGACAATCGACTG
*
14367931 TGTAGAAGATGGGAACTGAAACAGAAGCAAAAGAAAAAGGGAAAGGAACAAAAAGAAA-AAA-AT
454 TGTAGAAGATGGGAACTGAAACA-AAGCAAAAGCAAAAGGGAAAGGAACAAAAAGAAAGAAACAT
* * *
14367994 ATAATATGGTGTGAAGAAGGAATAATTGAAAAGTAAAGATGAAGAATGGGGGAAGAAAACATTAG
518 ATAATATGGTGTGAAGAAGAAATAATTGAAAAGCAAAGATGAAGAATGGGGGAAGAAAACGTTAG
*
14368059 ACGTCAGAAAAGAAAAGTGAATTTTTGGGGATTTCAAAAAAAATAATTAAAATTACTTTTCTAAA
583 ACGT-AGAAAAGAAAAG-GAATTTTTGGGGATTTC-AAAAAAATAATTAAAATTTCTTTT-TAAA
* *
14368124 AAAACCATTAACCATTTCCCCTACTAACTTCACCAAATTAGGTACCCACTTCTATTAGATTTCCC
644 AAAACCATTAACCATTTCCCCTACTAACTCCACCAAATTAGGTACCCACTTCTATCAGATTTCCC
* *
14368189 ATAGAATTCGAAACCCATGCAAACTCTACCACCTAGGTGGCTCAAGCAG
709 ATAGAATTCGAAACCCATCCAAACTCTACCACCTGGGTGGCTCAAGCAG
* *
14368238 GTGGTGTCGACAATCCAATTTTTCGGCTTTTAGCCATTCGTGATTTTTCTAGTTTTCGTTACACA
1 GTGGTGTCGACAGTCCAATTTTTCGGCTTTTAGCCGTTCGTGATTTTTCTAGTTTTCGTTACACA
* * *
14368303 CCTTGGCTTTCTTTATCCGAATCCACTCACGAGGCTTCCAGAACCTAAAAACGTCAATTAATCCT
66 CCTTGGCTTTTTTTATGCGAATCCACTCACGAGGCTTCCAGAACCTAAAAACATCAATTAATCCT
14368368 CCAAATTAGCAATGATTTACTAATTCCAATTAACACTTATGATTAAAAATGCTAACATACACCTT
131 CCAAATTAGCAATGATTTACTAATTCCAATTAACACTTATGATTAAAAATGCTAACATACACCTT
* * * * *
14368433 ACTTAACCAAAATTCTACATTTTTTTGGGTGTTCGATCACTTGCCCAAATGAACAACCACCACCC
196 ACTAAACCAAAATTCTAC-CTTTTTTGGGTGTTCGATCACTTACCCAAACGAACAGCCACCACCC
* * *
14368498 ATACTTAATTTGCTAGTGGGTCACTGAAAACTTCACGGTCTTCTCCTAGTAACAGAAAA-AACCG
260 ACACTTAATTTGCTAGTGGGTCACTGAAAGCTTCACGGTCTTCTCCTAATAACAGAAAAGAACCG
* * *
14368562 AATCAAACAACCTTACACCATAATTACAACCAACCTGAACATAATAATTCTCCATACCAATAAGG
325 AATCAAACAACCTTACGCCACAATTACAACCAACCTGAACATAATAATTCTCCATACCAACAAGG
*
14368627 AAATAATTCCACCACTGACAACAAACACCACAACCACTTACCAACAAGGTACGACAATCGACTAT
390 AAATAATTCCACCACTGACAACAAACACCACAACCACTTACCAACAAGGTACGACAATCGACTGT
** *
14368692 GTAG-A-A---GAACTG----AAA-CAAAAGCAAAAGGGAAAAAAACAAAAAGAAAGAAACAAAT
455 GTAGAAGATGGGAACTGAAACAAAGCAAAAGCAAAAGGGAAAGGAACAAAAAGAAAGAAACATAT
* *
14368747 AATATGGTGTGAAGAAGAAAAAAATTGAAAAGCAAAGATGAAGAATGGGGAAAGAAAACGTTAGA
520 AATATGGTGTGAAGAAG-AAATAATTGAAAAGCAAAGATGAAGAATGGGGGAAGAAAACGTTAGA
* * * **
14368812 CGTAAAACAAGAACA-GAAATTTTAAGGATTTCAAAAAAATAATTACTAAATTTTCTTTTTAAAG
584 CGTAGAA-AAGAAAAGGAATTTTTGGGGATTTCAAAAAAATAATTA--AAA-TTTCTTTTTAAA-
* * *
14368876 AAAACCATTAACCATTTCCCCCACTAAATCCACCAAATTAGGTGCCCACTTCTATCAGATTTCCC
644 AAAACCATTAACCATTTCCCCTACTAACTCCACCAAATTAGGTACCCACTTCTATCAGATTTCCC
* ** *
14368941 ATAGAATTCGAAACCTATCCAAACT-TCACCACCTGGGCAGCTCAAGGAG
709 ATAGAATTCGAAACCCATCCAAACTCT-ACCACCTGGGTGGCTCAAGCAG
* * * *
14368990 GTGGCGTCAACAGTCCAATTTTTCGGCTTTTAGCCGTTC-TCAATTTTTCTAGTTTTTGTTACAC
1 GTGGTGTCGACAGTCCAATTTTTCGGCTTTTAGCCGTTCGT-GATTTTTCTAGTTTTCGTTACAC
* * *
14369054 ACCTTGGCTTTTTTTTATGCGAATCCA-TCCATGAGGCTTCTAGAACCTAAAAACATTAATTAAT
65 ACCTTGGC-TTTTTTTATGCGAATCCACT-CACGAGGCTTCCAGAACCTAAAAACATCAATTAAT
** ***
14369118 CCTCCAAATTAGCAACAATTTACTAATTCCAATTAACACTTATGATTAAAAACATTAACATACAC
128 CCTCCAAATTAGCAATGATTTACTAATTCCAATTAACACTTATGATTAAAAATGCTAACATACAC
* ** *
14369183 CTTACTAAACCGAAATTC-AGCCCCTTTTGGGTGTTCGATCACTTACCCAAACGAACAGTCACCA
193 CTTACTAAACCAAAATTCTA-CCTTTTTTGGGTGTTCGATCACTTACCCAAACGAACAGCCACCA
* * * *** * *
14369247 CCCACATTTAATTTGCTTGTGAGTTGTTGAATGCTTCACGATCTTCTCCTAATAACAGAAAAGAA
257 CCCACACTTAATTTGCTAGTGGGTCACTGAAAGCTTCACGGTCTTCTCCTAATAACAGAAAAGAA
* *
14369312 -TGCAATCAAACAACCTTACGCCACAATTACAACCAACCTGAACATAATAATTCTCTATACCAAC
322 CCG-AATCAAACAACCTTACGCCACAATTACAACCAACCTGAACATAATAATTCTCCATACCAAC
* * *
14369376 AAGGAAATAATTCCACCATTAAC-ACAAACACCACAACCACTTACCAACAAGGTACGACAATTGA
386 AAGGAAATAATTCCACCACTGACAACAAACACCACAACCACTTACCAACAAGGTACGACAATCGA
* * *
14369440 CTGTGTAGAAGATGGGAATTGAAACAAAAGTAAAAGCAAAATGGAAAGGAACAAAAAGAAAGAAA
451 CTGTGTAGAAGATGGGAACTGAAAC-AAAGCAAAAGCAAAAGGGAAAGGAACAAAAAGAAAGAAA
* * * *
14369505 CATATAATATGGTGTGAAGAAGAAATAATTGTAAAGCAAAGGTTAAGAATGGAGGAAGAAAACGT
515 CATATAATATGGTGTGAAGAAGAAATAATTGAAAAGCAAAGATGAAGAATGGGGGAAGAAAACGT
* *
14369570 TAGACGTTAGAAAATAAAAGAGAATTTTTGGGGATTTCAAAAAAATAATTAAATTTTCTTTTTTT
580 TAGACG-TAGAAAAGAAAAG-GAATTTTTGGGGATTTCAAAAAAATAATTAAAATTTC--TTTTT
* * *
14369635 AAAAAAAAAAAAACCACTAACCATTTCCCCTACTAACTCCACCATATTAGGTACTCACTTCTATC
641 ------AAAAAAACCATTAACCATTTCCCCTACTAACTCCACCAAATTAGGTACCCACTTCTATC
* * *
14369700 AGATTTCCCACAGAATTCGAAACCCATCCAAGCTCCACCACCTGGGTGGCTCAAGCAG
700 AGATTTCCCATAGAATTCGAAACCCATCCAAACTCTACCACCTGGGTGGCTCAAGCAG
14369758 AAATAGTAAA
Statistics
Matches: 1334, Mismatches: 145, Indels: 74
0.86 0.09 0.05
Matches are distributed among these distances:
749 41 0.03
750 19 0.01
751 33 0.02
752 360 0.27
753 205 0.15
754 1 0.00
755 6 0.00
757 5 0.00
758 1 0.00
759 87 0.07
760 326 0.24
761 6 0.00
762 53 0.04
763 61 0.05
764 27 0.02
768 100 0.07
769 3 0.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (757 bp):
GTGGTGTCGACAGTCCAATTTTTCGGCTTTTAGCCGTTCGTGATTTTTCTAGTTTTCGTTACACA
CCTTGGCTTTTTTTATGCGAATCCACTCACGAGGCTTCCAGAACCTAAAAACATCAATTAATCCT
CCAAATTAGCAATGATTTACTAATTCCAATTAACACTTATGATTAAAAATGCTAACATACACCTT
ACTAAACCAAAATTCTACCTTTTTTGGGTGTTCGATCACTTACCCAAACGAACAGCCACCACCCA
CACTTAATTTGCTAGTGGGTCACTGAAAGCTTCACGGTCTTCTCCTAATAACAGAAAAGAACCGA
ATCAAACAACCTTACGCCACAATTACAACCAACCTGAACATAATAATTCTCCATACCAACAAGGA
AATAATTCCACCACTGACAACAAACACCACAACCACTTACCAACAAGGTACGACAATCGACTGTG
TAGAAGATGGGAACTGAAACAAAGCAAAAGCAAAAGGGAAAGGAACAAAAAGAAAGAAACATATA
ATATGGTGTGAAGAAGAAATAATTGAAAAGCAAAGATGAAGAATGGGGGAAGAAAACGTTAGACG
TAGAAAAGAAAAGGAATTTTTGGGGATTTCAAAAAAATAATTAAAATTTCTTTTTAAAAAAACCA
TTAACCATTTCCCCTACTAACTCCACCAAATTAGGTACCCACTTCTATCAGATTTCCCATAGAAT
TCGAAACCCATCCAAACTCTACCACCTGGGTGGCTCAAGCAG
Found at i:14372789 original size:20 final size:20
Alignment explanation
Indices: 14372764--14372811 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
14372754 AATTGAAGTG
14372764 AATGTGATATTGAGTTATGA
1 AATGTGATATTGAGTTATGA
* *
14372784 AATGTGATATTGGGTTGTGA
1 AATGTGATATTGAGTTATGA
14372804 AATGTGAT
1 AATGTGAT
14372812 TTTATGGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (20 bp):
AATGTGATATTGAGTTATGA
Found at i:14372970 original size:35 final size:35
Alignment explanation
Indices: 14372864--14373295 Score: 129
Period size: 35 Copynumber: 12.2 Consensus size: 35
14372854 CGACTAACGC
* * * *
14372864 TGGGCGCAACTTCTGTTAGTTCATCTAACTAGTGC
1 TGGGCACAACTTCTGTCAGTTCATCTGACTAGTGT
* * *
14372899 TGGGCACAACCATC-GTCGGTT-AT-TCGACTAGCGT
1 TGGGCACAA-CTTCTGTCAGTTCATCT-GACTAGTGT
* * *
14372933 TGGGCGCAACTTCTGTCAGTTCCTCTGACTGGTGT
1 TGGGCACAACTTCTGTCAGTTCATCTGACTAGTGT
* * * *
14372968 TGGGCACAACCATC-GTCGGTT-ATCCGACTAGCGCT
1 TGGGCACAA-CTTCTGTCAGTTCATCTGACTAGTG-T
* * * *
14373003 TGGTG--CAACTTCTATCAATTTATCTGCAC-AGTGC
1 TGG-GCACAACTTCTGTCAGTTCATCTG-ACTAGTGT
* * *
14373037 TGGGCACAACCAATACAACTTCTGTCAGTTTATCTAACTAGTGC
1 TGGG------C---ACAACTTCTGTCAGTTCATCTGACTAGTGT
* * * *
14373081 TAGGCACAACTATC-GTTAGTT-AT-TCGACTAGCGC
1 TGGGCACAACT-TCTGTCAGTTCATCT-GACTAGTGT
* * * * *
14373115 TAGGCTCAACTTTTGTCAGTTCATTTGACTAGTGC
1 TGGGCACAACTTCTGTCAGTTCATCTGACTAGTGT
* * *
14373150 TGGGCACAACCAT-TGTCGGTT-ATCTGACTAGTGC
1 TGGGCACAA-CTTCTGTCAGTTCATCTGACTAGTGT
** * * * *
14373184 TGGGTGCAACATCTGTTAGTTCATCTTACTAGTGC
1 TGGGCACAACTTCTGTCAGTTCATCTGACTAGTGT
* * * * * *
14373219 TGAGCAGAACCATC-GTCGGTT-ATCCGACTAGTGC
1 TGGGCACAA-CTTCTGTCAGTTCATCTGACTAGTGT
* ** * * *
14373253 TGAGTGCAACTTCTCTCAATTTATCTGACTAGTGT
1 TGGGCACAACTTCTGTCAGTTCATCTGACTAGTGT
14373288 TGGGCACA
1 TGGGCACA
14373296 CTCTTTATAT
Statistics
Matches: 295, Mismatches: 68, Indels: 68
0.68 0.16 0.16
Matches are distributed among these distances:
33 16 0.05
34 111 0.38
35 120 0.41
36 19 0.06
38 1 0.00
43 2 0.01
44 26 0.09
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (35 bp):
TGGGCACAACTTCTGTCAGTTCATCTGACTAGTGT
Found at i:14372972 original size:69 final size:69
Alignment explanation
Indices: 14372843--14373048 Score: 245
Period size: 69 Copynumber: 3.0 Consensus size: 69
14372833 AATTGATATT
* * * *
14372843 GTCGGTTCACCCGACTAACGCTGGGCGCAACTTCTGTTAGTTCATCTAACTAGTGCTGGGCACAA
1 GTCGGTT-ATCCGACTAGCGTTGGGCGCAACTTCTGTCAGTTCATCTAACTAGTGCTGGGCACAA
14372908 CCATC
65 CCATC
* * * * *
14372913 GTCGGTTATTCGACTAGCGTTGGGCGCAACTTCTGTCAGTTCCTCTGACTGGTGTTGGGCACAAC
1 GTCGGTTATCCGACTAGCGTTGGGCGCAACTTCTGTCAGTTCATCTAACTAGTGCTGGGCACAAC
14372978 CATC
66 CATC
* * * * *
14372982 GTCGGTTATCCGACTAGCGCTT-GGTGCAACTTCTATCAATTTATCTGCAC-AGTGCTGGGCACA
1 GTCGGTTATCCGACTAGCG-TTGGGCGCAACTTCTGTCAGTTCATCT-AACTAGTGCTGGGCACA
14373045 ACCA
64 ACCA
14373049 ATACAACTTC
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
69 105 0.91
70 11 0.09
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (69 bp):
GTCGGTTATCCGACTAGCGTTGGGCGCAACTTCTGTCAGTTCATCTAACTAGTGCTGGGCACAAC
CATC
Found at i:14373117 original size:34 final size:35
Alignment explanation
Indices: 14373073--14373253 Score: 106
Period size: 34 Copynumber: 5.3 Consensus size: 35
14373063 AGTTTATCTA
*
14373073 ACTAGTGCTAGGCACAACTATCGTTAGTT-ATTCG
1 ACTAGTGCTAGGCACAACTATCGTCAGTTCATTCG
* * * * *
14373107 ACTAGCGCTAGGCTCAACTTTTGTCAGTTCATTTG
1 ACTAGTGCTAGGCACAACTATCGTCAGTTCATTCG
* * * *
14373142 ACTAGTGCTGGGCACAACCATTGTCGGTT-A-TCTG
1 ACTAGTGCTAGGCACAACTATCGTCAGTTCATTC-G
* ** * *
14373176 ACTAGTGCTGGGTGCAAC-ATCTGTTAGTTCA-TCTT
1 ACTAGTGCTAGGCACAACTATC-GTCAGTTCATTC-G
* * * *
14373211 ACTAGTGCT-GAGCAGAACCATCGTCGGTT-ATCCG
1 ACTAGTGCTAG-GCACAACTATCGTCAGTTCATTCG
14373245 ACTAGTGCT
1 ACTAGTGCT
14373254 GAGTGCAACT
Statistics
Matches: 114, Mismatches: 26, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
33 3 0.03
34 58 0.51
35 50 0.44
36 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (35 bp):
ACTAGTGCTAGGCACAACTATCGTCAGTTCATTCG
Found at i:14373149 original size:113 final size:113
Alignment explanation
Indices: 14372939--14373161 Score: 270
Period size: 113 Copynumber: 2.0 Consensus size: 113
14372929 GCGTTGGGCG
* * * * * * *
14372939 CAACTTCTGTCAGTTCCTCTGACTGGTGTTGGGCACAACCATCGTCGGTTATCCGACTAGCGCTT
1 CAACTTCTGTCAGTTCATCTAACTAGTGCTAGGCACAACCATCGTCAGTTATCCGACTAGCGCTA
*
14373004 GGTGCAACTTCTATCAATTTATCTGCACAGTGCTGGGCACAACCAATA
66 GGTGCAACTTCTATCAATTCATCTGCACAGTGCTGGGCACAACCAATA
* * * *
14373052 CAACTTCTGTCAGTTTATCTAACTAGTGCTAGGCACAACTATCGTTAGTTATTCGACTAGCGCTA
1 CAACTTCTGTCAGTTCATCTAACTAGTGCTAGGCACAACCATCGTCAGTTATCCGACTAGCGCTA
* * * *
14373117 GGCT-CAACTTTTGTCAGTTCATTTG-ACTAGTGCTGGGCACAACCA
66 GG-TGCAACTTCTATCAATTCATCTGCAC-AGTGCTGGGCACAACCA
14373162 TTGTCGGTTA
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
112 2 0.02
113 89 0.97
114 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (113 bp):
CAACTTCTGTCAGTTCATCTAACTAGTGCTAGGCACAACCATCGTCAGTTATCCGACTAGCGCTA
GGTGCAACTTCTATCAATTCATCTGCACAGTGCTGGGCACAACCAATA
Found at i:14373172 original size:69 final size:68
Alignment explanation
Indices: 14373052--14373295 Score: 215
Period size: 69 Copynumber: 3.5 Consensus size: 68
14373042 ACAACCAATA
* * * * **
14373052 CAACTTCTGTCAGTTTATCTAACTAGTGCTAGGCACAACTATCGTTAGTTATTCGACTAGCGCTA
1 CAACTTCTGTCAGTTCAT-TTACTAGTGCTGGGCACAACCATCGTCGGTTATTCGACTAGCGCT-
14373117 GGCT-
64 GGCTG
* * *
14373121 CAACTTTTGTCAGTTCATTTGACTAGTGCTGGGCACAACCATTGTCGGTTA-TCTGACTAGTGCT
1 CAACTTCTGTCAGTTCATTT-ACTAGTGCTGGGCACAACCATCGTCGGTTATTC-GACTAGCGCT
*
14373185 GGGTG
64 GGCTG
* * * * * *
14373190 CAACATCTGTTAGTTCATCTTACTAGTGCTGAGCAGAACCATCGTCGGTTATCCGACTAGTGCTG
1 CAACTTCTGTCAGTTCAT-TTACTAGTGCTGGGCACAACCATCGTCGGTTATTCGACTAGCGCTG
14373255 AG-TG
65 -GCTG
* * * * *
14373259 CAACTTCTCTCAATTTATCTGACTAGTGTTGGGCACA
1 CAACTTCTGTCAGTTCAT-TTACTAGTGCTGGGCACA
14373296 CTCTTTATAT
Statistics
Matches: 143, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
68 6 0.04
69 133 0.93
70 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (68 bp):
CAACTTCTGTCAGTTCATTTACTAGTGCTGGGCACAACCATCGTCGGTTATTCGACTAGCGCTGG
CTG
Found at i:14373220 original size:182 final size:182
Alignment explanation
Indices: 14372870--14373230 Score: 472
Period size: 182 Copynumber: 2.0 Consensus size: 182
14372860 ACGCTGGGCG
* * * * *
14372870 CAACTTCTGTTAGTTCATCTAACTAGTGCTGGGCACAACCATCGTCGGTTATTCGACTAGCGTTG
1 CAACTTCTGTCAGTTCATCTAACTAGTGCTAGGCACAACCATCGTCAGTTATTCGACTAGCGCTA
* * *
14372935 GGCGCAACTTCTGTCAGTTCCTCTGACTGGTGTTGGGCACAACCATCGTCGGTTATCCGACTAGC
66 GGCGCAACTTCTGTCAGTTCATCTGACTAGTGCTGGGCACAACCATCGTCGGTTATCCGACTAGC
* * * *
14373000 GCTTGGTGCAACTTCTATCAATTTATCTGCACAGTGCTGGGCACAACCAATA
131 GCTGGGTGCAACATCTATCAATTCATCTGCACAGTGCTGAGCACAACCAATA
* * *
14373052 CAACTTCTGTCAGTTTATCTAACTAGTGCTAGGCACAACTATCGTTAGTTATTCGACTAGCGCTA
1 CAACTTCTGTCAGTTCATCTAACTAGTGCTAGGCACAACCATCGTCAGTTATTCGACTAGCGCTA
* * * * * *
14373117 GGCTCAACTTTTGTCAGTTCATTTGACTAGTGCTGGGCACAACCATTGTCGGTTATCTGACTAGT
66 GGCGCAACTTCTGTCAGTTCATCTGACTAGTGCTGGGCACAACCATCGTCGGTTATCCGACTAGC
* * * * *
14373182 GCTGGGTGCAACATCTGTTAGTTCATCT-TACTAGTGCTGAGCAGAACCA
131 GCTGGGTGCAACATCTATCAATTCATCTGCAC-AGTGCTGAGCACAACCA
14373231 TCGTCGGTTA
Statistics
Matches: 152, Mismatches: 26, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
181 2 0.01
182 150 0.99
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (182 bp):
CAACTTCTGTCAGTTCATCTAACTAGTGCTAGGCACAACCATCGTCAGTTATTCGACTAGCGCTA
GGCGCAACTTCTGTCAGTTCATCTGACTAGTGCTGGGCACAACCATCGTCGGTTATCCGACTAGC
GCTGGGTGCAACATCTATCAATTCATCTGCACAGTGCTGAGCACAACCAATA
Found at i:14373254 original size:34 final size:34
Alignment explanation
Indices: 14373140--14373256 Score: 112
Period size: 34 Copynumber: 3.4 Consensus size: 34
14373130 TCAGTTCATT
* * *
14373140 TGACTAGTGCTGGGCACAACCATTGTCGGTTATC
1 TGACTAGTGCTGAGCAGAACCATCGTCGGTTATC
** **
14373174 TGACTAGTGCTG-GGTGCAA-CATCTGTTAGTTCATC
1 TGACTAGTGCTGAGCAG-AACCATC-GTCGGTT-ATC
*
14373209 TTACTAGTGCTGAGCAGAACCATCGTCGGTTATC
1 TGACTAGTGCTGAGCAGAACCATCGTCGGTTATC
*
14373243 CGACTAGTGCTGAG
1 TGACTAGTGCTGAG
14373257 TGCAACTTCT
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
33 4 0.06
34 34 0.52
35 21 0.32
36 6 0.09
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (34 bp):
TGACTAGTGCTGAGCAGAACCATCGTCGGTTATC
Found at i:14382397 original size:22 final size:21
Alignment explanation
Indices: 14382369--14382485 Score: 65
Period size: 22 Copynumber: 5.9 Consensus size: 21
14382359 CTTATGGCGA
14382369 TGTTATTCAGGCTTTGTGCCGG
1 TGTTATTCAGGCTTTGTGCC-G
* *
14382391 TGTTATTTAGGCGTTGTGCC-
1 TGTTATTCAGGCTTTGTGCCG
* *
14382411 ---TA-GCAGGCTTTATGCCGG
1 TGTTATTCAGGCTTTGTGCC-G
* *
14382429 TGTTATTTAGGCTCTGTGCC-
1 TGTTATTCAGGCTTTGTGCCG
* *
14382449 ---TAGT-AGGCTTTGTGTCAG
1 TGTTATTCAGGCTTTGTG-CCG
14382467 TGTTATTCAGGCTTTGTGC
1 TGTTATTCAGGCTTTGTGC
14382486 TAGTGTATTA
Statistics
Matches: 69, Mismatches: 14, Indels: 25
0.64 0.13 0.23
Matches are distributed among these distances:
16 19 0.28
17 6 0.09
21 6 0.09
22 38 0.55
ACGTcount: A:0.12, C:0.17, G:0.30, T:0.41
Consensus pattern (21 bp):
TGTTATTCAGGCTTTGTGCCG
Found at i:14382418 original size:38 final size:37
Alignment explanation
Indices: 14382376--14382485 Score: 148
Period size: 38 Copynumber: 2.9 Consensus size: 37
14382366 CGATGTTATT
14382376 CAGGCTTTGTGCCGGTGTTATTTAGGCGTTGTGCCTAG
1 CAGGCTTTGTGCCGGTGTTATTTAGGC-TTGTGCCTAG
*
14382414 CAGGCTTTATGCCGGTGTTATTTAGGCTCTGTGCCTAG
1 CAGGCTTTGTGCCGGTGTTATTTAGGCT-TGTGCCTAG
* * * *
14382452 TAGGCTTTGTGTCAGTGTTATTCAGGCTTTGTGC
1 CAGGCTTTGTGCCGGTGTTATTTAGGC-TTGTGC
14382486 TAGTGTATTA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
37 1 0.02
38 62 0.97
39 1 0.02
ACGTcount: A:0.12, C:0.18, G:0.31, T:0.39
Consensus pattern (37 bp):
CAGGCTTTGTGCCGGTGTTATTTAGGCTTGTGCCTAG
Found at i:14383649 original size:16 final size:16
Alignment explanation
Indices: 14383606--14383652 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
14383596 TAAAGTTACG
14383606 TTTTTACTATAATGCT
1 TTTTTACTATAATGCT
*
14383622 TTGTAATACTATAAT-CT
1 TT-T-TTACTATAATGCT
14383639 ATTTTTACTATAAT
1 -TTTTTACTATAAT
14383653 TGGATATGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 11 0.42
17 4 0.15
18 11 0.42
ACGTcount: A:0.32, C:0.11, G:0.04, T:0.53
Consensus pattern (16 bp):
TTTTTACTATAATGCT
Found at i:14397680 original size:29 final size:30
Alignment explanation
Indices: 14397624--14397695 Score: 110
Period size: 29 Copynumber: 2.4 Consensus size: 30
14397614 AGTCGAAGTT
*
14397624 ATCCCTTTTCATATTTTGATGGTAGTCACC
1 ATCCCTTTTCATATGTTGATGGTAGTCACC
*
14397654 ATCCCTTTTCAT-TGTTGATGGTCGTCACC
1 ATCCCTTTTCATATGTTGATGGTAGTCACC
*
14397683 ATCCCTATTCATA
1 ATCCCTTTTCATA
14397696 ATTCGATAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 26 0.68
30 12 0.32
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATATGTTGATGGTAGTCACC
Found at i:14397745 original size:30 final size:30
Alignment explanation
Indices: 14397624--14397753 Score: 111
Period size: 30 Copynumber: 4.4 Consensus size: 30
14397614 AGTCGAAGTT
** * *
14397624 ATCCCTTTTCATATTTTGATGGTAGTCACC
1 ATCCCTTTTCATAAATCGATGGTCGTCACC
** *
14397654 ATCCCTTTTCAT-TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAAATCGATGGTCGTCACC
* * * ***
14397683 ATCCCTATTCATAATTCGATAG-CCAAAGCC
1 ATCCCTTTTCATAAATCGATGGTCGTCA-CC
*
14397713 ATCCATTTTCATAAATCGATGGTCGTCACC
1 ATCCCTTTTCATAAATCGATGGTCGTCACC
14397743 ATCCCTTTTCA
1 ATCCCTTTTCA
14397754 CTATCATAAT
Statistics
Matches: 79, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
29 28 0.35
30 49 0.62
31 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAAATCGATGGTCGTCACC
Found at i:14397794 original size:30 final size:30
Alignment explanation
Indices: 14397758--14397828 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
14397748 TTTTCACTAT
**
14397758 CATAATTTGATAGCCGAAGTTATCCCTTTA
1 CATAATTTGATAGCCGAAGCCATCCCTTTA
* * *
14397788 CATAATTCGATTGCCGAAGCCATCCCTTTT
1 CATAATTTGATAGCCGAAGCCATCCCTTTA
14397818 CATAATTTGAT
1 CATAATTTGAT
14397829 GGTCGTCGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (30 bp):
CATAATTTGATAGCCGAAGCCATCCCTTTA
Found at i:14398831 original size:24 final size:24
Alignment explanation
Indices: 14398780--14398832 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
14398770 AAATTGAAAT
*
14398780 AAAAATAAATAAAAGGGTAAATTAA
1 AAAAATAAATAAAA-GCTAAATTAA
* *
14398805 AAAAATAAATAAAA-CTTAATTAC
1 AAAAATAAATAAAAGCTAAATTAA
14398828 AAAAA
1 AAAAA
14398833 CATTAAAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.44
25 14 0.56
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.21
Consensus pattern (24 bp):
AAAAATAAATAAAAGCTAAATTAA
Found at i:14399125 original size:22 final size:21
Alignment explanation
Indices: 14399090--14399242 Score: 74
Period size: 19 Copynumber: 7.7 Consensus size: 21
14399080 AAAGGGTATC
* * *
14399090 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
14399111 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
*
14399134 TACATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
14399153 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14399172 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
14399191 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14399210 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14399229 TGCATATCATATCT
1 TACAAATCATATCT
14399243 ATGATTATAT
Statistics
Matches: 109, Mismatches: 11, Indels: 24
0.76 0.08 0.17
Matches are distributed among these distances:
17 4 0.04
19 72 0.66
21 8 0.07
22 15 0.14
23 10 0.09
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.40
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:14399135 original size:23 final size:22
Alignment explanation
Indices: 14399090--14399147 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14399080 AAAGGGTATC
* * *
14399090 TACAAATTAAATC-TCTAATAT
1 TACAAATCATATCTTCTAAGAT
14399111 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
14399134 TACATATCATATCT
1 TACAAATCATATCT
14399148 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14399150 original size:19 final size:19
Alignment explanation
Indices: 14399126--14399293 Score: 219
Period size: 19 Copynumber: 8.8 Consensus size: 19
14399116 AATCATATCT
*
14399126 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
** *
14399145 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
14399164 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
14399183 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
14399202 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14399221 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* ** *
14399240 TCTATGATTATATATTATA
1 TCTAAGATTGCATATCATA
*
14399259 TCTAACATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
14399278 TCTAGGATTGCATATC
1 TCTAAGATTGCATATC
14399294 CCTGAAGATT
Statistics
Matches: 127, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 127 1.00
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14399188 original size:57 final size:57
Alignment explanation
Indices: 14399119--14399293 Score: 264
Period size: 57 Copynumber: 3.1 Consensus size: 57
14399109 ATTACAAAAT
* * ** *
14399119 CATATC-T-TCTAAGATTACATATCATATCTAAGATTATATATTATATCTAAGATTG
1 CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
14399174 CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
* * *
14399231 CATATCATATCTATGATTATATATTATATCTAACATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
14399288 CATATC
1 CATATC
14399294 CCTGAAGATT
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
55 6 0.05
56 1 0.01
57 103 0.94
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (57 bp):
CATATCATATCTAAGATTATATATTATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:14399844 original size:132 final size:132
Alignment explanation
Indices: 14399622--14400513 Score: 1554
Period size: 132 Copynumber: 6.8 Consensus size: 132
14399612 TAGGACTTAC
* * *
14399622 AATCTTCAACCTATTCCACTGCTGACCAGGG-AGATATG-ATTACTGGCTTCAATGTACTCCACT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGCTTCAATGTACTCCACT
* * *
14399685 GTAACCACAGGGAGGTAAAATCCGCCATATTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
64 ATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
14399750 CTGA
129 CTGA
14399754 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* *
14399819 AACCACGGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAGCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
*
14399884 AA
131 GA
* * *
14399886 AATCTTCAATCTATTCCACTGTTGTGCAGGGAAGTAGAATTACTGGTTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* *
14399951 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCCCTACTGCTTAGGGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
14400016 GA
131 GA
*
14400018 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
** * *
14400083 AACCACAGAAAGGTAAAATCCGCCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
14400148 GA
131 GA
14400150 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
14400215 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
14400280 GA
131 GA
*
14400282 AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
*
14400347 AACCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
14400412 GA
131 GA
14400414 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
*
14400479 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCT
14400514 ACTTCACTGT
Statistics
Matches: 726, Mismatches: 32, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 723 1.00
133 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GA
Found at i:14400287 original size:44 final size:44
Alignment explanation
Indices: 14400239--14400433 Score: 123
Period size: 44 Copynumber: 4.4 Consensus size: 44
14400229 AAAATCCGCC
* *
14400239 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** **
14400283 ATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGA-TAAG-A-T-CTGAA
* * * * * * * **
14400327 -GCTTCAATGTACTCCACTA-TAACCATAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* *
14400371 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
*
14400415 ATCTTCAATCTATTCCACT
1 ATCTTCAATCTACTCCACT
14400434 GTTGTCCAGG
Statistics
Matches: 108, Mismatches: 31, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
42 3 0.03
43 19 0.18
44 65 0.60
45 17 0.16
46 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
Found at i:14400593 original size:19 final size:19
Alignment explanation
Indices: 14400569--14400717 Score: 217
Period size: 19 Copynumber: 7.8 Consensus size: 19
14400559 AATCATATCT
14400569 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
14400588 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
14400607 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* ** *
14400626 TCTAATATTATATATTATA
1 TCTAAGATTGCATATCATA
14400645 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14400664 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
14400683 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
14400702 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
14400718 CCTGAAGATT
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 112 1.00
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14417264 original size:16 final size:16
Alignment explanation
Indices: 14417243--14417274 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14417233 GGGACCTTAA
*
14417243 TCTAATTTCCATGATT
1 TCTAATTTCAATGATT
14417259 TCTAATTTCAATGATT
1 TCTAATTTCAATGATT
14417275 CCTTATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50
Consensus pattern (16 bp):
TCTAATTTCAATGATT
Found at i:14417282 original size:16 final size:16
Alignment explanation
Indices: 14417244--14417282 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14417234 GGACCTTAAT
* *
14417244 CTAATTTCCATGATTT
1 CTAATTTCAATGATTC
14417260 CTAATTTCAATGATTC
1 CTAATTTCAATGATTC
*
14417276 CTTATTT
1 CTAATTT
14417283 TTCATTTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.05, T:0.51
Consensus pattern (16 bp):
CTAATTTCAATGATTC
Found at i:14418655 original size:21 final size:20
Alignment explanation
Indices: 14418624--14418679 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 20
14418614 TTTACAATCC
14418624 AATATACATTTCAATACCACAAT
1 AATAT-CATTTCAAT-CCA-AAT
*
14418647 AAT-TCATTT-AATTCAAAT
1 AATATCATTTCAATCCAAAT
14418665 AATATCATTTGCAAT
1 AATATCATTT-CAAT
14418680 TTCCATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
18 6 0.21
19 8 0.28
20 3 0.10
21 8 0.28
22 1 0.03
23 3 0.10
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.38
Consensus pattern (20 bp):
AATATCATTTCAATCCAAAT
Found at i:14420224 original size:23 final size:23
Alignment explanation
Indices: 14420198--14420296 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
14420188 ATAAGTGCCA
14420198 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14420221 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14420244 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
14420267 CACAGATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14420290 CACTGAT
1 CACTGAT
14420297 CAATAACACT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 66 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14420265 original size:46 final size:46
Alignment explanation
Indices: 14420198--14420295 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
14420188 ATAAGTGCCA
* *
14420198 CACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACAGATACGTAGCCGTAGCTAC
* *
14420244 CACTGAAATGTAGCCGAAGCTACCACAGATATGTAGCTGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACAGATACGTAGCCGTAGCTAC
14420290 CACTGA
1 CACTGA
14420296 TCAATAACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACAGATACGTAGCCGTAGCTAC
Found at i:14420548 original size:18 final size:17
Alignment explanation
Indices: 14420522--14420560 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
14420512 ATTTTCCTTC
14420522 CACATTC-AATAATAATT
1 CACATTCAAAT-ATAATT
14420539 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
14420557 CACA
1 CACA
14420561 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 12 0.60
19 3 0.15
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:14422519 original size:10 final size:10
Alignment explanation
Indices: 14422506--14422533 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
14422496 TTATTTTTGT
14422506 ACAATTTTTA
1 ACAATTTTTA
14422516 ACAATTTTTA
1 ACAATTTTTA
14422526 ACAATTTT
1 ACAATTTT
14422534 CCAAATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (10 bp):
ACAATTTTTA
Found at i:14422966 original size:23 final size:23
Alignment explanation
Indices: 14422940--14423038 Score: 135
Period size: 23 Copynumber: 4.3 Consensus size: 23
14422930 ATAAGTGCCA
*
14422940 CACTGATATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14422963 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14422986 CACTGAAATTTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14423009 CACAGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14423032 CACTGAT
1 CACTGAT
14423039 CAATAACACT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 64 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14423007 original size:46 final size:46
Alignment explanation
Indices: 14422940--14423037 Score: 151
Period size: 46 Copynumber: 2.1 Consensus size: 46
14422930 ATAAGTGCCA
* * *
14422940 CACTGATATGTAGCTGAAGCTACCACTGATACGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACAGATACGTAGCCGTAGCTAC
* *
14422986 CACTGAAATTTAGCCGAAGCTACCACAGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACAGATACGTAGCCGTAGCTAC
14423032 CACTGA
1 CACTGA
14423038 TCAATAACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACAGATACGTAGCCGTAGCTAC
Found at i:14426278 original size:23 final size:23
Alignment explanation
Indices: 14426249--14426347 Score: 110
Period size: 23 Copynumber: 4.3 Consensus size: 23
14426239 ATAAGTTCCA
14426249 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
14426272 CACTGATACGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * * *
14426295 CATTGAAATTTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14426318 CACAGATATGTAGCCGTAA-CTAC
1 CACTGATATGTAGCCG-AAGCTAC
14426341 CACTGAT
1 CACTGAT
14426348 CAATAACATT
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
23 57 0.97
24 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14429288 original size:30 final size:30
Alignment explanation
Indices: 14429254--14429312 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
14429244 CATTACGTAA
* *
14429254 TTCGATAACCGAAGTTATCCATTTTCATAG
1 TTCGACAACCAAAGTTATCCATTTTCATAG
* *
14429284 TTCGACAGCCAAAGTTATCCCTTTTCATA
1 TTCGACAACCAAAGTTATCCATTTTCATA
14429313 ATTTGATGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.36
Consensus pattern (30 bp):
TTCGACAACCAAAGTTATCCATTTTCATAG
Found at i:14429339 original size:30 final size:30
Alignment explanation
Indices: 14429300--14429376 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 30
14429290 AGCCAAAGTT
14429300 ATCCCTTTTCATAATTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* ** * **
14429330 ATCCATTTTCATTGTTCGATGGTTGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
14429360 ATCCCTTTTCATAATTT
1 ATCCCTTTTCATAATTT
14429377 TATAGCCGAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.44
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:14429497 original size:29 final size:29
Alignment explanation
Indices: 14429360--14429518 Score: 155
Period size: 29 Copynumber: 5.4 Consensus size: 29
14429350 GGTTGTCACC
* * *
14429360 ATCCCTTTTCATAATTTTATAGCCGAAGCT
1 ATCCCTTTTCAT-AGTTGATAGTCGAAGCT
*
14429390 ATCTC-TTTCATAGATTGATAGTCGAAGCT
1 ATCCCTTTTCATAG-TTGATAGTCGAAGCT
* * *
14429419 ATCCCTTTTCATAGTTCAATGGTC-ATCA-CC
1 ATCCCTTTTCATAGTT-GATAGTCGA--AGCT
*
14429449 ATCCCTTTTCATAATTGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTGATAGTCGAAGCT
*
14429478 ATCCCTTTTCAT-GTTCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTT-GATAGTCGAAGCT
14429507 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14429519 TCATTGATGG
Statistics
Matches: 107, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
28 4 0.04
29 68 0.64
30 34 0.32
31 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATAGTTGATAGTCGAAGCT
Found at i:14429525 original size:59 final size:60
Alignment explanation
Indices: 14429360--14429531 Score: 185
Period size: 59 Copynumber: 2.9 Consensus size: 60
14429350 GGTTGTCACC
* ** *
14429360 ATCCCTTTTCATAATTTTATAGCCGAAGCTATCTC-TTTCA-TAGATTGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTCAATAGCCGAAGCTATCCCTTTTCATTA-ATTGATAGTCGAAGCT
* * *
14429419 ATCCCTTTTCATAGTTCAATGGTC-ATCA-CCATCCCTTTTCA-TAATTGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTCAATAGCCGA--AGCTATCCCTTTTCATTAATTGATAGTCGAAGCT
* * *
14429478 ATCCCTTTTCAT-GTTCGATAGCCGAAGCTATCCCTTTTCATTCATTGATGGTCG
1 ATCCCTTTTCATAGTTCAATAGCCGAAGCTATCCCTTTTCATTAATTGATAGTCG
14429532 TTGTTACGCC
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
57 1 0.01
58 21 0.22
59 64 0.68
60 8 0.09
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (60 bp):
ATCCCTTTTCATAGTTCAATAGCCGAAGCTATCCCTTTTCATTAATTGATAGTCGAAGCT
Found at i:14429530 original size:88 final size:89
Alignment explanation
Indices: 14429330--14429518 Score: 258
Period size: 89 Copynumber: 2.1 Consensus size: 89
14429320 GGTCATCACC
* * * ** * *
14429330 ATCCATTTTCATTGTTCGATGGTTGTCACCATCCCTTTTCATAATTTTATAGCCGAAGCTATCTC
1 ATCCCTTTTCATAGTTCAATGGTCATCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCC
*
14429395 TTTCATAGATTGATAGTCGAAGCT
66 TTTCATAGATTGATAGCCGAAGCT
*
14429419 ATCCCTTTTCATAGTTCAATGGTCATCACCATCCCTTTTCATAA-TTGATAGTCGAAGCTATCCC
1 ATCCCTTTTCATAGTTCAATGGTCATCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCC
14429483 TTTTCAT-G-TTCGATAGCCGAAGCT
66 -TTTCATAGATT-GATAGCCGAAGCT
14429507 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14429519 TCATTGATGG
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
87 2 0.02
88 42 0.47
89 45 0.51
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.39
Consensus pattern (89 bp):
ATCCCTTTTCATAGTTCAATGGTCATCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCC
TTTCATAGATTGATAGCCGAAGCT
Found at i:14440865 original size:20 final size:20
Alignment explanation
Indices: 14440851--14440891 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14440841 GGAAGTGTAT
* *
14440851 ACAGGGGCACTGAAGTGCAA
1 ACAGAGGCACCGAAGTGCAA
14440871 ACAGAGGCACCGAAGTGCAA
1 ACAGAGGCACCGAAGTGCAA
14440891 A
1 A
14440892 TCCCGTACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.22, G:0.32, T:0.07
Consensus pattern (20 bp):
ACAGAGGCACCGAAGTGCAA
Found at i:14450051 original size:45 final size:45
Alignment explanation
Indices: 14449925--14450051 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
14449915 TTTGCCTAAC
* * *
14449925 ATAAGTAAGACCATAGTTGAAAGATGATATTACATCATGATAAAG
1 ATAAGTAAGACCATAGTTGAAAGATGATATGACATTATGATAAAA
* * * *
14449970 ATAAGTAAAACCATAGTTAAAAGATGTTATGGCATTATGATAAAA
1 ATAAGTAAGACCATAGTTGAAAGATGATATGACATTATGATAAAA
* * * *
14450015 ATGAGTAAGACCATAGCTGAAAGAAGCTATGACATTA
1 ATAAGTAAGACCATAGTTGAAAGATGATATGACATTA
14450052 GGTGCAAGTA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.26
Consensus pattern (45 bp):
ATAAGTAAGACCATAGTTGAAAGATGATATGACATTATGATAAAA
Found at i:14450222 original size:27 final size:27
Alignment explanation
Indices: 14450191--14450246 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
14450181 AGGGCATCAT
* * *
14450191 AGATAGTCCGTCGGGATACTAAACATG
1 AGATAGTCCATCGGGACAATAAACATG
14450218 AGATAGTCCATCGGGACAATAAACATG
1 AGATAGTCCATCGGGACAATAAACATG
14450245 AG
1 AG
14450247 GATCCCGAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
AGATAGTCCATCGGGACAATAAACATG
Found at i:14454841 original size:20 final size:20
Alignment explanation
Indices: 14454816--14454857 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14454806 CCCCCACCCA
14454816 TTCTACTTCAATTTAATTTT
1 TTCTACTTCAATTTAATTTT
***
14454836 TTCTACTTTTCTTTAATTTT
1 TTCTACTTCAATTTAATTTT
14454856 TT
1 TT
14454858 AATATTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (20 bp):
TTCTACTTCAATTTAATTTT
Found at i:14459708 original size:13 final size:13
Alignment explanation
Indices: 14459690--14459714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14459680 TTCTCAATCC
14459690 TAATAATAATAAA
1 TAATAATAATAAA
14459703 TAATAATAATAA
1 TAATAATAATAA
14459715 TAAACAACGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:14462982 original size:27 final size:27
Alignment explanation
Indices: 14462815--14462992 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
14462805 TAAATTGTAC
*
14462815 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
14462842 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
14462868 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
14462896 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
14462924 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
14462951 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
14462978 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14462993 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:14462983 original size:82 final size:81
Alignment explanation
Indices: 14462812--14462992 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
14462802 GATTAAATTG
* * * *
14462812 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14462877 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
14462893 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14462957 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
14462975 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14462993 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:14470987 original size:27 final size:27
Alignment explanation
Indices: 14470820--14470997 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
14470810 TAAATTGTAC
*
14470820 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
14470847 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
14470873 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
14470901 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
14470929 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
14470956 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
14470983 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14470998 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:14470988 original size:82 final size:81
Alignment explanation
Indices: 14470817--14470997 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
14470807 GATTAAATTG
* * * *
14470817 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14470882 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
14470898 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14470962 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
14470980 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14470998 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:14475471 original size:57 final size:57
Alignment explanation
Indices: 14475408--14475516 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
14475398 GATTTGTTTG
*
14475408 TATTGATGTTAAATTCAGTCATAAA-GCTTTCCAAAATAAGGTTATTCAAGTTGTCTA
1 TATTGATGTTAAATTCAGTCA-AAATGCTATCCAAAATAAGGTTATTCAAGTTGTCTA
* * * *
14475465 TATTGATGTTTAATTGAGTCAAAATGCTATCCAAATTAAGGTTTTTCAAGTT
1 TATTGATGTTAAATTCAGTCAAAATGCTATCCAAAATAAGGTTATTCAAGTT
14475517 CTCCATTTGG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 3 0.07
57 43 0.93
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (57 bp):
TATTGATGTTAAATTCAGTCAAAATGCTATCCAAAATAAGGTTATTCAAGTTGTCTA
Found at i:14475542 original size:57 final size:57
Alignment explanation
Indices: 14475408--14475547 Score: 142
Period size: 57 Copynumber: 2.5 Consensus size: 57
14475398 GATTTGTTTG
* * * * * *
14475408 TATTGATGTTAAATTCAGTCATAAAGCTTTCCAAAATAAGGTTATTCAAGTTGTCTA
1 TATTGATATTTAATTAAGTCATAAAGCTATCCAAAATAAGGTTATTCAAGTTCTCCA
* * * *
14475465 TATTGATGTTTAATTGAGTCA-AAATGCTATCCAAATTAAGGTTTTTCAAGTTCTCCA
1 TATTGATATTTAATTAAGTCATAAA-GCTATCCAAAATAAGGTTATTCAAGTTCTCCA
14475522 T-TTGGATATCTTAA-TAAGTCATAAAG
1 TATT-GATAT-TTAATTAAGTCATAAAG
14475548 TTGTCTTATT
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
56 5 0.07
57 58 0.83
58 7 0.10
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.39
Consensus pattern (57 bp):
TATTGATATTTAATTAAGTCATAAAGCTATCCAAAATAAGGTTATTCAAGTTCTCCA
Found at i:14483083 original size:31 final size:29
Alignment explanation
Indices: 14483044--14483127 Score: 107
Period size: 31 Copynumber: 2.8 Consensus size: 29
14483034 ATCCCAAAAC
*
14483044 TACACATGAACCTTGATTTGATGTGCAATT-
1 TACACATGAACTTTGATTTG--GTGCAATTA
14483074 TGACACATGAACTTTGATTTGGTGCAATTA
1 T-ACACATGAACTTTGATTTGGTGCAATTA
14483104 TACACATGGAACTTTGATTGTGGT
1 TACACAT-GAACTTTGATT-TGGT
14483128 TCAAATTTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
29 14 0.29
30 13 0.27
31 22 0.45
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (29 bp):
TACACATGAACTTTGATTTGGTGCAATTA
Found at i:14483108 original size:29 final size:28
Alignment explanation
Indices: 14483044--14483172 Score: 105
Period size: 31 Copynumber: 4.2 Consensus size: 28
14483034 ATCCCAAAAC
*
14483044 TACACATGAACCTTGATTTGATGTGCAATT
1 TACACATGAACTTTGATTTG--GTGCAATT
14483074 TGACACATGAACTTTGATTTGGTGCAATT
1 T-ACACATGAACTTTGATTTGGTGCAATT
*
14483103 ATACACATGGAACTTTGATTGTGGTTCAAATT
1 -TACACAT-GAACTTTGATT-TGGTGC-AATT
** * * *
14483135 TATGCATGAAACTTTAATCTTGATTCAATT
1 TACACATG-AACTTTGAT-TTGGTGCAATT
14483165 GTACACAT
1 -TACACAT
14483173 TTAAAGAAAC
Statistics
Matches: 83, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
29 14 0.17
30 18 0.22
31 46 0.55
32 5 0.06
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (28 bp):
TACACATGAACTTTGATTTGGTGCAATT
Found at i:14483319 original size:30 final size:29
Alignment explanation
Indices: 14483285--14483346 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
14483275 AGTAATTTGT
* *
14483285 TAAAATTGAATTAAATCAATATTTCATATA
1 TAAAATTGAATGAAATCAA-AGTTCATATA
* *
14483315 TAAAATTGCATGAAATCAAAGTTCATGTA
1 TAAAATTGAATGAAATCAAAGTTCATATA
14483344 TAA
1 TAA
14483347 CGTTACACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35
Consensus pattern (29 bp):
TAAAATTGAATGAAATCAAAGTTCATATA
Found at i:14484952 original size:31 final size:32
Alignment explanation
Indices: 14484908--14484974 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
14484898 AGGCATTGTT
* * *
14484908 GTTATATAATTTTATCATTTTAGTCACTCA-C
1 GTTACATAATTTTACCATTTTAGTCACCCATC
*
14484939 GTTACATACTTTTACCATTTTAGTCACCCATC
1 GTTACATAATTTTACCATTTTAGTCACCCATC
14484971 GTTA
1 GTTA
14484975 ATTTTCCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 26 0.84
32 5 0.16
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (32 bp):
GTTACATAATTTTACCATTTTAGTCACCCATC
Found at i:14487672 original size:26 final size:26
Alignment explanation
Indices: 14487642--14487692 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14487632 ACCAATGAAC
*
14487642 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
14487668 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
14487693 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:14487732 original size:103 final size:104
Alignment explanation
Indices: 14487548--14487770 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
14487538 AATGGATATC
14487548 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
14487613 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
14487652 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
14487716 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
14487755 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
14487771 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:14490975 original size:12 final size:12
Alignment explanation
Indices: 14490958--14490982 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14490948 AAATTTGAGT
14490958 AATCAACTAAGA
1 AATCAACTAAGA
14490970 AATCAACTAAGA
1 AATCAACTAAGA
14490982 A
1 A
14490983 GTTTACCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATCAACTAAGA
Found at i:14491145 original size:19 final size:19
Alignment explanation
Indices: 14491104--14491145 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
14491094 CCGTTTTCCA
*
14491104 AAAAAAAAAAAAGACAAAG
1 AAAAAAAAAAAAGACAAAC
*
14491123 AAAAAAACAAAAGA-AAATC
1 AAAAAAAAAAAAGACAAA-C
14491142 AAAA
1 AAAA
14491146 CTAATGGAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAAAAGACAAAC
Found at i:14494215 original size:40 final size:40
Alignment explanation
Indices: 14494151--14494294 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 40
14494141 TGCATTCAGA
* **
14494151 GTACCGAAGTACAAAAAGGGGCACATATGTGCAATCAACG
1 GTACTGAAGTACAAAAAGGGGCACATATGTGCAATCAGGG
* ** * *
14494191 GTACTGAAGTACAAACAGAAGCACATATATGTAATCAGGG
1 GTACTGAAGTACAAAAAGGGGCACATATGTGCAATCAGGG
* * *
14494231 GTA-TCGAAGTATAAATAGGGGAACATATGTGCAATCAGGG
1 GTACT-GAAGTACAAAAAGGGGCACATATGTGCAATCAGGG
* *
14494271 GTACTGTAGTACAAATAGGGGCAC
1 GTACTGAAGTACAAAAAGGGGCAC
14494295 GTTTGTGTGA
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 82 0.98
41 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.19
Consensus pattern (40 bp):
GTACTGAAGTACAAAAAGGGGCACATATGTGCAATCAGGG
Found at i:14495089 original size:16 final size:16
Alignment explanation
Indices: 14495068--14495116 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
14495058 TTGATCTTTT
14495068 ACTTAATTAACATTTA
1 ACTTAATTAACATTTA
* *
14495084 ACTTAATTATCAAATT-
1 ACTTAATTAAC-ATTTA
*
14495100 ACTTAATTAACCTTTA
1 ACTTAATTAACATTTA
14495116 A
1 A
14495117 AAAATATCAT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
15 2 0.08
16 21 0.81
17 3 0.12
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (16 bp):
ACTTAATTAACATTTA
Found at i:14506652 original size:40 final size:40
Alignment explanation
Indices: 14506570--14506793 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
14506560 ATCGGGGTAT
** * * *
14506570 AAACAGGGGCACAAAAGTGCATTC-AGAGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
*
14506609 AAACAGGGGCACGCATGTGCAATCAAGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
* * *
14506649 AAACAGGGGCACGTATGTGCAATCACGGGTTCTGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
* *
14506689 AAATAGGGGCACGTATGTGCAATCAAGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
* * * *
14506729 AAACAAGGGCACGTATATGCAATCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
** *
14506769 AAACAATGGCACGTTTGTGCAATCA
1 AAACAGGGGCACGTATGTGCAATCA
14506794 TACAATAATT
Statistics
Matches: 161, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 20 0.12
40 141 0.88
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (40 bp):
AAACAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
Found at i:14507572 original size:16 final size:16
Alignment explanation
Indices: 14507551--14507599 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
14507541 TTCATCTTTT
14507551 ACTTAATTAACATTTA
1 ACTTAATTAACATTTA
* *
14507567 ACTTAATTATCAAATT-
1 ACTTAATTAAC-ATTTA
*
14507583 ACTTAATTAACCTTTA
1 ACTTAATTAACATTTA
14507599 A
1 A
14507600 AAATTATCGT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
15 2 0.08
16 21 0.81
17 3 0.12
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (16 bp):
ACTTAATTAACATTTA
Found at i:14515148 original size:38 final size:37
Alignment explanation
Indices: 14515098--14515177 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
14515088 TAAGTGTATT
*
14515098 TTATTATAAAACTTAAAGTTAAAATATATAATATAATA
1 TTATAATAAAACTTAAAGTTAAAATATAT-ATATAATA
* * * *
14515136 TTATAATAAAACTTAAATTTTAAGTATATATATTATA
1 TTATAATAAAACTTAAAGTTAAAATATATATATAATA
14515173 TTATA
1 TTATA
14515178 TTATATTATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 12 0.32
38 25 0.68
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (37 bp):
TTATAATAAAACTTAAAGTTAAAATATATATATAATA
Found at i:14515174 original size:5 final size:5
Alignment explanation
Indices: 14515160--14515207 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
14515150 AAATTTTAAG
14515160 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
14515208 CTAAAATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.09
5 39 0.91
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:14515274 original size:13 final size:12
Alignment explanation
Indices: 14515242--14515308 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 12
14515232 AGAAATAGAA
14515242 AAAGAAGGAAAG
1 AAAGAAGGAAAG
14515254 AAAGAAGGAAA-
1 AAAGAAGGAAAG
14515265 ATAGAGAAGGAAAG
1 A-A-AGAAGGAAAG
14515279 --A-AAGGAAAG
1 AAAGAAGGAAAG
*
14515288 AGA-AAGAGAAAG
1 AAAGAAG-GAAAG
14515300 AAAGAAGGA
1 AAAGAAGGA
14515309 GAAAAGTTAG
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
9 8 0.17
10 1 0.02
11 5 0.11
12 21 0.45
13 12 0.26
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (12 bp):
AAAGAAGGAAAG
Found at i:14515275 original size:25 final size:25
Alignment explanation
Indices: 14515240--14515305 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
14515230 ATAGAAATAG
*
14515240 AAAA-AGAAGGAAAGAAA-GAAGGA
1 AAAAGAGAAGGAAAGAAAGGAAAGA
14515263 AAATAGAGAAGGAAAGAAAGGAAAGA
1 AAA-AGAGAAGGAAAGAAAGGAAAGA
* *
14515289 GAAAGAGAAAGAAAGAA
1 AAAAGAGAAGGAAAGAA
14515306 GGAGAAAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 3 0.08
24 1 0.03
25 26 0.70
26 7 0.19
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (25 bp):
AAAAGAGAAGGAAAGAAAGGAAAGA
Found at i:14515314 original size:21 final size:21
Alignment explanation
Indices: 14515249--14515314 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
14515239 GAAAAAGAAG
14515249 GAAAGAAAGAAGGA-AAATAGA
1 GAAAGAAAGAAGGAGAAA-AGA
*
14515270 GAAGGAAAGAAAGGAAAGAGAAAGA
1 GAAAGAAAG-AAGG--AGA-AAAGA
14515295 GAAAGAAAGAAGGAGAAAAG
1 GAAAGAAAGAAGGAGAAAAG
14515315 TTAGGGTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
21 12 0.32
22 7 0.18
24 5 0.13
25 12 0.32
26 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (21 bp):
GAAAGAAAGAAGGAGAAAAGA
Found at i:14516202 original size:41 final size:39
Alignment explanation
Indices: 14516157--14516282 Score: 150
Period size: 37 Copynumber: 3.2 Consensus size: 39
14516147 CGACTTTGAG
14516157 TCGATGAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
1 TCGATGAGACACTGGGTGTCAATTTATTACTTC-GATT-AT
* * *
14516198 TCGATGAGGCACTGGGTGCCAA--T-TTACTTCGATTTAG
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCGA-TTAT
* *
14516235 CCGATGAGACACTGGGTGTCAATTTATTACTTCTAATTAT
1 TCGATGAGACACTGGGTGTCAATTTATTACTTC-GATTAT
14516275 TCGATGAG
1 TCGATGAG
14516283 GTACTAGGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
37 22 0.31
38 9 0.13
39 2 0.03
40 17 0.24
41 21 0.30
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGTCAATTTATTACTTCGATTAT
Found at i:14516249 original size:37 final size:37
Alignment explanation
Indices: 14516140--14516260 Score: 136
Period size: 37 Copynumber: 3.1 Consensus size: 37
14516130 GAGTTCAGGG
14516140 ATTT-CTTCGACTTTGAGTCGATGAGACACTGGGTGTCA
1 ATTTACTTCGA-TTT-AGTCGATGAGACACTGGGTGTCA
* * * *
14516178 ATTTATTACTTCGGATTAATTCGATGAGGCACTGGGTGCCA
1 A--T-TTACTTC-GATTTAGTCGATGAGACACTGGGTGTCA
*
14516219 ATTTACTTCGATTTAGCCGATGAGACACTGGGTGTCA
1 ATTTACTTCGATTTAGTCGATGAGACACTGGGTGTCA
14516256 ATTTA
1 ATTTA
14516261 TTACTTCTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
37 28 0.41
38 8 0.12
39 1 0.01
40 1 0.01
41 23 0.33
42 6 0.09
43 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (37 bp):
ATTTACTTCGATTTAGTCGATGAGACACTGGGTGTCA
Found at i:14516486 original size:21 final size:22
Alignment explanation
Indices: 14516457--14516499 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14516447 AGCTATTTGT
*
14516457 ATAGAAAGT-ATGAGATTTGAA
1 ATAGAAAGTGATGAGAATTGAA
*
14516478 ATAGCAAGTGATGAGAATTGAA
1 ATAGAAAGTGATGAGAATTGAA
14516500 TATGTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.47, C:0.02, G:0.26, T:0.26
Consensus pattern (22 bp):
ATAGAAAGTGATGAGAATTGAA
Found at i:14524865 original size:7 final size:7
Alignment explanation
Indices: 14524855--14524944 Score: 74
Period size: 7 Copynumber: 13.0 Consensus size: 7
14524845 GAGAATTAAT
14524855 GATTGAG
1 GATTGAG
14524862 GATTGAG
1 GATTGAG
* *
14524869 GATTAAA
1 GATTGAG
* *
14524876 AATTGGG
1 GATTGAG
14524883 GA-TGAG
1 GATTGAG
14524889 GATTGAG
1 GATTGAG
*
14524896 GATTGAA
1 GATTGAG
*
14524903 AATTGAG
1 GATTGAG
14524910 GATTGAG
1 GATTGAG
* *
14524917 AATTTAG
1 GATTGAG
* *
14524924 GATTTAT
1 GATTGAG
14524931 GATTGAG
1 GATTGAG
*
14524938 TATTGAG
1 GATTGAG
14524945 TTGAAAAGAA
Statistics
Matches: 63, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
6 5 0.08
7 58 0.92
ACGTcount: A:0.34, C:0.00, G:0.33, T:0.32
Consensus pattern (7 bp):
GATTGAG
Found at i:14524872 original size:14 final size:14
Alignment explanation
Indices: 14524842--14524927 Score: 84
Period size: 14 Copynumber: 6.2 Consensus size: 14
14524832 ATAATTGAAA
* *
14524842 ATTGAGAATTAATG
1 ATTGAGAATTGAGG
*
14524856 ATTGAGGATTGAGG
1 ATTGAGAATTGAGG
* * *
14524870 ATTAAAAATTGGGG
1 ATTGAGAATTGAGG
*
14524884 A-TGAGGATTGAGG
1 ATTGAGAATTGAGG
*
14524897 ATTGAAAATTGAGG
1 ATTGAGAATTGAGG
*
14524911 ATTGAGAATTTAGG
1 ATTGAGAATTGAGG
14524925 ATT
1 ATT
14524928 TATGATTGAG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
13 9 0.16
14 47 0.84
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.31
Consensus pattern (14 bp):
ATTGAGAATTGAGG
Found at i:14524880 original size:21 final size:21
Alignment explanation
Indices: 14524842--14524916 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
14524832 ATAATTGAAA
* **
14524842 ATTGAGAATTAATGATTGAGG
1 ATTGAGGATTAAAAATTGAGG
14524863 ATTGAGGATTAAAAATTGGGGATGAGG
1 ATTGAGGATTAAAAA-T-----TGAGG
*
14524890 ATTGAGGATTGAAAATTGAGG
1 ATTGAGGATTAAAAATTGAGG
14524911 ATTGAG
1 ATTGAG
14524917 AATTTAGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
21 23 0.52
22 1 0.02
26 1 0.02
27 19 0.43
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.29
Consensus pattern (21 bp):
ATTGAGGATTAAAAATTGAGG
Found at i:14524893 original size:27 final size:28
Alignment explanation
Indices: 14524855--14524927 Score: 103
Period size: 27 Copynumber: 2.6 Consensus size: 28
14524845 GAGAATTAAT
*
14524855 GATTGAGGATTGAGGATTAAAAATTGGG
1 GATTGAGGATTGAGGATTAAAAATTGAG
*
14524883 GA-TGAGGATTGAGGATTGAAAATTGAG
1 GATTGAGGATTGAGGATTAAAAATTGAG
* *
14524910 GATTGAGAATTTAGGATT
1 GATTGAGGATTGAGGATT
14524928 TATGATTGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 25 0.62
28 15 0.38
ACGTcount: A:0.36, C:0.00, G:0.34, T:0.30
Consensus pattern (28 bp):
GATTGAGGATTGAGGATTAAAAATTGAG
Found at i:14534929 original size:17 final size:17
Alignment explanation
Indices: 14534903--14534940 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14534893 TTCTAGTTTT
14534903 ATAA-AATT-AAAATAAA
1 ATAACAATTAAAAAT-AA
14534919 ATAACAATTAAAAATAA
1 ATAACAATTAAAAATAA
14534936 ATAAC
1 ATAAC
14534941 TAACTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 11 0.55
18 5 0.25
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAACAATTAAAAATAA
Found at i:14535790 original size:48 final size:48
Alignment explanation
Indices: 14535731--14535882 Score: 218
Period size: 48 Copynumber: 3.2 Consensus size: 48
14535721 AAATAATGTC
*
14535731 TGGTTACTCATTTGGGTTAAACCTACATGAATAATGAATAATAGTGCT
1 TGGTTACTCATTTGGGTTAAACCTACACGAATAATGAATAATAGTGCT
*
14535779 TGGTTTCTCATTTGGGTTAAACCTACACGAATAATGAATAATAGTGCCT
1 TGGTTACTCATTTGGGTTAAACCTACACGAATAATGAATAATAGTG-CT
* * * *
14535828 AGG-TAC-CTGTTTAGGTTAAACCTACACAAATAATGAATAATAGTGCT
1 TGGTTACTC-ATTTGGGTTAAACCTACACGAATAATGAATAATAGTGCT
14535875 TGGTTACT
1 TGGTTACT
14535883 TGTCAAGGTT
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
47 5 0.05
48 83 0.90
49 4 0.04
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (48 bp):
TGGTTACTCATTTGGGTTAAACCTACACGAATAATGAATAATAGTGCT
Found at i:14535892 original size:48 final size:48
Alignment explanation
Indices: 14535731--14535904 Score: 206
Period size: 48 Copynumber: 3.6 Consensus size: 48
14535721 AAATAATGTC
** * *
14535731 TGGTTACTCATTTGGGTTAAACCTACATGAATAATGAATAATAGTGCT
1 TGGTTACTTGTTTAGGTTAAACCTACACGAATAATGAATAATAGTGCT
* ** *
14535779 TGGTTTCTCATTTGGGTTAAACCTACACGAATAATGAATAATAGTGCCT
1 TGGTTACTTGTTTAGGTTAAACCTACACGAATAATGAATAATAGTG-CT
* * *
14535828 AGG-TACCTGTTTAGGTTAAACCTACACAAATAATGAATAATAGTGCT
1 TGGTTACTTGTTTAGGTTAAACCTACACGAATAATGAATAATAGTGCT
** *
14535875 TGGTTACTTGTCAAGGTTAAACCTATACGA
1 TGGTTACTTGTTTAGGTTAAACCTACACGA
14535905 TAAATAGCTT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 4 0.04
48 101 0.93
49 4 0.04
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (48 bp):
TGGTTACTTGTTTAGGTTAAACCTACACGAATAATGAATAATAGTGCT
Found at i:14541172 original size:168 final size:168
Alignment explanation
Indices: 14540894--14541209 Score: 447
Period size: 168 Copynumber: 1.9 Consensus size: 168
14540884 AATGGCATGA
* * * * *
14540894 ACTTGAAGTAAACATCACTCAGAAGGGGGTATTGTGATACTAAAGCATGAAAGTCTTGATACCCC
1 ACTTGAAGAAAACATCACTCAGAAGGGGGTATCGTGATACTAAAACATAAAAGTCATGATACCCC
* * * * *
14540959 TGACAGTATTAAAGTGAGGAGCATTGCGGCCAATGCTAGTGATATCGCAATACCAAGTATGGGTA
66 TGACAGTACTAAAGTGAAGAGAATTGAGGCCAATGATAGTGATATCGCAATACCAAGTATGGGTA
14541024 TCA-TGATATCGAGATTCCAAAAAAGTTCAAGTTTGAGG
131 TCACT-ATATCGAGATTCCAAAAAAGTTCAAGTTTGAGG
* * *
14541062 ACTTGAAGAAAACATCACTTAGAAGGGGGTATCGTGATACTAAAATATAAAAGTGATGATACCCC
1 ACTTGAAGAAAACATCACTCAGAAGGGGGTATCGTGATACTAAAACATAAAAGTCATGATACCCC
* * *
14541127 TGACAGTCCTGAAGTGAAGAGAATTGAGGCCAACT-ATAGTGATATCGCGATACCAAGTATGGGT
66 TGACAGTACTAAAGTGAAGAGAATTGAGGCCAA-TGATAGTGATATCGCAATACCAAGTATGGGT
*
14541191 ATCACTATATCTAGATTCC
130 ATCACTATATCGAGATTCC
14541210 CAAGATGCCC
Statistics
Matches: 129, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
168 127 0.98
169 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (168 bp):
ACTTGAAGAAAACATCACTCAGAAGGGGGTATCGTGATACTAAAACATAAAAGTCATGATACCCC
TGACAGTACTAAAGTGAAGAGAATTGAGGCCAATGATAGTGATATCGCAATACCAAGTATGGGTA
TCACTATATCGAGATTCCAAAAAAGTTCAAGTTTGAGG
Found at i:14546668 original size:21 final size:21
Alignment explanation
Indices: 14546630--14546669 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14546620 TGGATAAACC
* * *
14546630 ACCACATATTTGCTGATAACG
1 ACCACATAATCGCAGATAACG
14546651 ACCACATAATCGCAGATAA
1 ACCACATAATCGCAGATAA
14546670 ACTGCCATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (21 bp):
ACCACATAATCGCAGATAACG
Found at i:14552830 original size:168 final size:168
Alignment explanation
Indices: 14552542--14552864 Score: 431
Period size: 168 Copynumber: 1.9 Consensus size: 168
14552532 AATGGCACGA
* * * *
14552542 ACTTGAAGAAAACATTACTCAAAAGGGGGTATTGTGATACTAAATCCTGAAAGTCTTGATACCAC
1 ACTTGAAGAAAACATCACTCAAAAGGGGGTATCGTGATACTAAATCATGAAAGTCATGATACCAC
* * *
14552607 TGACAGTATTAAAGTGAAGAGAATTGTGGCCAATGCTAGTGATATCGCAATACCAAGTATGGGTA
66 TGACAGTACTAAAGTGAAGAGAATTGAGGCCAATGCCAGTGATATCGCAATACCAAGTATGGGTA
14552672 TCA-TGATATCGAGATTCCAAAGATGTTCAAGTTTGAGG
131 TCACT-ATATCGAGATTCCAAAGATGTTCAAGTTTGAGG
* * *
14552710 ACTTGAGGAAAACATCACTCAGAAGGGGGTATCGTGATACTGAAAT-AT-AGAAGTGATGATACG
1 ACTTGAAGAAAACATCACTCAAAAGGGGGTATCGTGATACT-AAATCATGA-AAGTCATGATAC-
* * *
14552773 C-CTGATAGTCCTAAAGTGAAGAGAATTGAGGCCAACT-CCAGTGATATCGCTATACCAAGTATG
63 CACTGACAGTACTAAAGTGAAGAGAATTGAGGCCAA-TGCCAGTGATATCGCAATACCAAGTATG
* *
14552836 GGTATCACTATATCTAGATTCCCAAGATG
127 GGTATCACTATATCGAGATTCCAAAGATG
14552865 ACCAAGTTCG
Statistics
Matches: 135, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
167 1 0.01
168 127 0.94
169 7 0.05
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (168 bp):
ACTTGAAGAAAACATCACTCAAAAGGGGGTATCGTGATACTAAATCATGAAAGTCATGATACCAC
TGACAGTACTAAAGTGAAGAGAATTGAGGCCAATGCCAGTGATATCGCAATACCAAGTATGGGTA
TCACTATATCGAGATTCCAAAGATGTTCAAGTTTGAGG
Found at i:14564406 original size:41 final size:41
Alignment explanation
Indices: 14564286--14564406 Score: 127
Period size: 41 Copynumber: 3.0 Consensus size: 41
14564276 AACCTGATTC
* * * *
14564286 AATTCACTGGCAATGAGCCTGCTAGACTTAAAGTTTGAATT
1 AATTCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATT
* * * *
14564327 ATTTCACCGGCATTAAGCTTGCTGGACATAAAGTCTGAATT
1 AATTCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATT
* * *
14564368 ACATT-ACCGGCTTTAAGCCTGCTAGACTTTAAGCCTGAA
1 A-ATTCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAA
14564407 AATTTCCATT
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 62 0.97
42 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (41 bp):
AATTCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATT
Found at i:14573943 original size:41 final size:41
Alignment explanation
Indices: 14573864--14573944 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
14573854 CATGATTCAA
* **
14573864 TTCACCAGCAATTAGCCTGCTAGACTTAAAGTTTGAATTAT
1 TTCACCAGCAATTAGCCTGCTAGACATAAAGTCCGAATTAT
* *
14573905 TTCACCTGC-ATTAAGCCTGCTGGACATAAAGTCCGAATTA
1 TTCACCAGCAATT-AGCCTGCTAGACATAAAGTCCGAATTA
14573945 CATTACAGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 3 0.09
41 31 0.91
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (41 bp):
TTCACCAGCAATTAGCCTGCTAGACATAAAGTCCGAATTAT
Found at i:14575309 original size:11 final size:11
Alignment explanation
Indices: 14575287--14575324 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14575277 TTAACCTTAT
14575287 TATA-ATAA-A
1 TATATATAACA
14575296 TATATATAACA
1 TATATATAACA
14575307 TATATATAACA
1 TATATATAACA
*
14575318 TGTATAT
1 TATATAT
14575325 TAAGGATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 4 0.15
10 4 0.15
11 18 0.69
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (11 bp):
TATATATAACA
Found at i:14575510 original size:13 final size:13
Alignment explanation
Indices: 14575492--14575517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14575482 TCAAACGATC
14575492 AAATTTTCACACA
1 AAATTTTCACACA
14575505 AAATTTTCACACA
1 AAATTTTCACACA
14575518 TATAACTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATTTTCACACA
Found at i:14587821 original size:13 final size:13
Alignment explanation
Indices: 14587780--14587821 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
14587770 CCATGGTTAG
14587780 AATCAGTCATACA
1 AATCAGTCATACA
*
14587793 AATCA--CAGACA
1 AATCAGTCATACA
*
14587804 AATCAGTCATATA
1 AATCAGTCATACA
14587817 AATCA
1 AATCA
14587822 AGGAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 10 0.42
13 14 0.58
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (13 bp):
AATCAGTCATACA
Found at i:14587830 original size:24 final size:24
Alignment explanation
Indices: 14587780--14587830 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
14587770 CCATGGTTAG
*
14587780 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGAAA
*
14587804 AATCAGTCATATAAATCA-AGGAAA
1 AATCAGTCATACAAATCACA-GAAA
14587828 AAT
1 AAT
14587831 AAATCATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.53, C:0.18, G:0.10, T:0.20
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGAAA
Found at i:14587902 original size:27 final size:27
Alignment explanation
Indices: 14587859--14588002 Score: 132
Period size: 27 Copynumber: 5.4 Consensus size: 27
14587849 GGGCAAAATA
* *
14587859 GTCA-TTTACCCTCTAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* **
14587885 GTCATTTTACCTTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTACG
* *
14587912 GTCA-TTTAACCTTTAGGGGGTATTACG
1 GTCATTTTACCCTATA-GGGGTATTACG
* * *
14587939 GACATTTTACCCTA-AGGGGGTTTTTCG
1 GTCATTTTACCCTATA-GGGGTATTACG
*
14587966 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
**
14587993 ACCATTTTAC
1 GTCATTTTAC
14588003 AAATATTTGG
Statistics
Matches: 94, Mismatches: 20, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
26 12 0.13
27 74 0.79
28 8 0.09
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:14587959 original size:54 final size:53
Alignment explanation
Indices: 14587859--14588002 Score: 152
Period size: 54 Copynumber: 2.7 Consensus size: 53
14587849 GGGCAAAATA
* * * *
14587859 GTCATTTACCCTCTAGGGGCATTACGGTCATTTTACCTTATAGGGGTATTTT-G
1 GTCATTTAACCTCTAGGGGTATTACGGACATTTTACCCTATAGGGGT-TTTTCG
*
14587912 GTCATTTAACCTTTAGGGGGTATTACGGACATTTTACCCTA-AGGGGGTTTTTCG
1 GTCATTTAACCTCTA-GGGGTATTACGGACATTTTACCCTATA-GGGGTTTTTCG
*
14587966 GTCATTTTACC-CTACAGGGGTATTAC-GACCATTTTAC
1 GTCATTTAACCTCT--AGGGGTATTACGGA-CATTTTAC
14588003 AAATATTTGG
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
53 21 0.27
54 56 0.72
55 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (53 bp):
GTCATTTAACCTCTAGGGGTATTACGGACATTTTACCCTATAGGGGTTTTTCG
Found at i:14601519 original size:10 final size:10
Alignment explanation
Indices: 14601504--14601529 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14601494 GATTTATTTA
14601504 ATTTAATAAC
1 ATTTAATAAC
14601514 ATTTAATAAC
1 ATTTAATAAC
14601524 ATTTAA
1 ATTTAA
14601530 GGTCGTTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
ATTTAATAAC
Found at i:14605805 original size:16 final size:16
Alignment explanation
Indices: 14605784--14605814 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14605774 ACAACATTTA
14605784 TCATAAATAATCATAC
1 TCATAAATAATCATAC
*
14605800 TCATAAATTATCATA
1 TCATAAATAATCATA
14605815 AAGTATCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (16 bp):
TCATAAATAATCATAC
Done.