Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 54 of 172
Found at i:14606201 original size:50 final size:50
Alignment explanation
Indices: 14606137--14606319 Score: 161
Period size: 50 Copynumber: 3.5 Consensus size: 50
14606127 TACTGCAAAT
* ** * * *
14606137 GCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTGCCTAT
1 GCCATGTCCCAGATATGGTCTTACATGAGACCTCTCATATCGATGCCAAC
* ** * *
14606187 GCTATGTCCCAGATATGGTCTTACGGGGGACCTCTCATCTCGATGCCAAC
1 GCCATGTCCCAGATATGGTCTTACATGAGACCTCTCATATCGATGCCAAC
* * *
14606237 GCCATGTCCCAGACATGGTCTTACATTG-GACCTCTCATAACCTCAATAATGCCAAT
1 GCCATGTCCCAGATATGGTCTTACA-TGAGACCTCTCAT-A--TC---GATGCCAAC
*
14606293 GCCATGTCCCAGACATGGTCTTACATG
1 GCCATGTCCCAGATATGGTCTTACATG
14606320 GGATCTTATT
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
50 71 0.66
51 1 0.01
53 2 0.02
55 2 0.02
56 32 0.30
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGATATGGTCTTACATGAGACCTCTCATATCGATGCCAAC
Found at i:14608587 original size:60 final size:60
Alignment explanation
Indices: 14608494--14608607 Score: 201
Period size: 60 Copynumber: 1.9 Consensus size: 60
14608484 GTTAACAATG
14608494 ACATCTCCTCGTTGTGGAGCTAAAACAAAGATAAAATGCATGTTACAAGCTATCATTGAC
1 ACATCTCCTCGTTGTGGAGCTAAAACAAAGATAAAATGCATGTTACAAGCTATCATTGAC
* * *
14608554 ACATCTCCTCGTTGTGGAGCTTAAGCAGAGATAAAATGCATGTTACAAGCTATC
1 ACATCTCCTCGTTGTGGAGCTAAAACAAAGATAAAATGCATGTTACAAGCTATC
14608608 GTTAACAACA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (60 bp):
ACATCTCCTCGTTGTGGAGCTAAAACAAAGATAAAATGCATGTTACAAGCTATCATTGAC
Found at i:14610944 original size:27 final size:27
Alignment explanation
Indices: 14610875--14611080 Score: 208
Period size: 27 Copynumber: 7.7 Consensus size: 27
14610865 TTCAACTCTT
**
14610875 AGGGGTATAACAGTCATTTTACCC-T-
1 AGGGGTATTTCAGTCATTTTACCCTTC
* *
14610900 ATGGGATATTTCGGTCATTTTACCCTTC
1 A-GGGGTATTTCAGTCATTTTACCCTTC
*
14610928 AGGGGTATTTCAATCATTTTACCCTT-
1 AGGGGTATTTCAGTCATTTTACCCTTC
*
14610954 TGAGGGTATTTCAGTCATTTTACCCTTC
1 AG-GGGTATTTCAGTCATTTTACCCTTC
* * *
14610982 AGGGG-AATTCTAGTCATTTTACTCTTT
1 AGGGGTATTTC-AGTCATTTTACCCTTC
* *
14611009 AGGGGTATTTCGGTCA-TTTACCCTTT
1 AGGGGTATTTCAGTCATTTTACCCTTC
*
14611035 AAGGGTATTT-ATGTCATTTTACCCTTC
1 AGGGGTATTTCA-GTCATTTTACCCTTC
* *
14611062 GGGGGTATTTCGGTCATTT
1 AGGGGTATTTCAGTCATTT
14611081 GCCCATGAAT
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
25 1 0.01
26 46 0.31
27 96 0.64
28 6 0.04
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTCAGTCATTTTACCCTTC
Found at i:14610980 original size:54 final size:54
Alignment explanation
Indices: 14610875--14611080 Score: 242
Period size: 53 Copynumber: 3.9 Consensus size: 54
14610865 TTCAACTCTT
** * *
14610875 AGGGGTATAACAGTCATTTTACCCTATG-GGATATTTCGGTCATTTTACCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTC
* *
14610928 AGGGGTATTTCAATCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTC
* * *
14610982 AGGGG-AATTCTAGTCATTTTACTCTTT-AGGGGTATTTCGGTCA-TTTACCCTTT
1 AGGGGTATTTC-AGTCATTTTACCCTTTGA-GGGTATTTCGGTCATTTTACCCTTC
* * *
14611035 AAGGGTATTT-ATGTCATTTTACCCTTCGGGGGTATTTCGGTCATTT
1 AGGGGTATTTCA-GTCATTTTACCCTTTGAGGGTATTTCGGTCATTT
14611081 GCCCATGAAT
Statistics
Matches: 130, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.01
53 69 0.53
54 60 0.46
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (54 bp):
AGGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTC
Found at i:14611030 original size:80 final size:81
Alignment explanation
Indices: 14610913--14611066 Score: 231
Period size: 80 Copynumber: 1.9 Consensus size: 81
14610903 GGATATTTCG
*
14610913 GTCATTTTACCCTTCAGGGGTATTTCAATCATTTTACCCTTTGAGGGTATTTCA-GTCATTTTAC
1 GTCATTTTACCCTTCAGGGGTATTTCAATCATTTTACCCTTTAAGGGTATTT-ATGTCATTTTAC
14610977 CCTTCAGGGGAATTCTA
65 CCTTCAGGGGAATTCTA
* * **
14610994 GTCATTTTACTCTTTAGGGGTATTTCGGTCA-TTTACCCTTTAAGGGTATTTATGTCATTTTACC
1 GTCATTTTACCCTTCAGGGGTATTTCAATCATTTTACCCTTTAAGGGTATTTATGTCATTTTACC
*
14611058 CTTCGGGGG
66 CTTCAGGGG
14611067 TATTTCGGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 1 0.02
80 38 0.58
81 27 0.41
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (81 bp):
GTCATTTTACCCTTCAGGGGTATTTCAATCATTTTACCCTTTAAGGGTATTTATGTCATTTTACC
CTTCAGGGGAATTCTA
Found at i:14614161 original size:26 final size:26
Alignment explanation
Indices: 14614132--14614181 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14614122 ACACAACAAT
14614132 ATCGCAACAAAACTGCTAGTAATAAA
1 ATCGCAACAAAACTGCTAGTAATAAA
* *
14614158 ATCGCAGCAAAGCTGCTAGTAATA
1 ATCGCAACAAAACTGCTAGTAATA
14614182 GTATATGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (26 bp):
ATCGCAACAAAACTGCTAGTAATAAA
Found at i:14614399 original size:27 final size:27
Alignment explanation
Indices: 14614341--14614816 Score: 496
Period size: 27 Copynumber: 17.6 Consensus size: 27
14614331 ATCTCCTAAA
* * * *
14614341 GGTATATTAATCATTTTACCCAAT-GGG
1 GGTATTTTAGTCATTTTACCC-TTCGAG
* *
14614368 GGTATTTTAGTCATTTTACCTTTTGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
* *
14614395 TGTATTTTAGTCATTTTACACTTCGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
* *
14614422 GGTATTTCAATCATTTTACCCTTCG-G
1 GGTATTTTAGTCATTTTACCCTTCGAG
* * *
14614448 GAGTA-TTTCGATCATTTGACCCTACGAG
1 G-GTATTTTAG-TCATTTTACCCTTCGAG
* *
14614476 GGTATTTCAATCATTTTACCCTTCGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
* *
14614503 GGTATTTCAGTGATTTTACCCTTCGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
*
14614530 GGTA-TTTCGATCATTTTACCCTTCGAG
1 GGTATTTTAG-TCATTTTACCCTTCGAG
*
14614557 GGTATTTCAGTCATTTTACCCTTCGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
* * *
14614584 GGTATTTCAATCATTTTGCCCTTCGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
**
14614611 GGTATTTCGGTCATTTTACCCTTCGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
** * * *
14614638 GGTATTTCGGCCCTTTTACCCTTTGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
* *
14614665 GGTATTTCAGTCATTTTACCCTTTGAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
* * *
14614692 GGTATTTTGGTCATTTTACCCTTTGAA
1 GGTATTTTAGTCATTTTACCCTTCGAG
14614719 GGTATTTCTA-TCATTTTACCCTTCGAG
1 GGTATTT-TAGTCATTTTACCCTTCGAG
* * *
14614746 GGTA-TTTCGTTCATTTTACCATTTGAG
1 GGTATTTTAG-TCATTTTACCCTTCGAG
* *
14614773 GGTATTTTGGTCATTTTACCCTTCAAG
1 GGTATTTTAGTCATTTTACCCTTCGAG
*
14614800 GGTATTTTGGTCATTTT
1 GGTATTTTAGTCATTTT
14614817 CCCACGAATC
Statistics
Matches: 384, Mismatches: 54, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 10 0.03
27 361 0.94
28 12 0.03
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (27 bp):
GGTATTTTAGTCATTTTACCCTTCGAG
Found at i:14614426 original size:81 final size:81
Alignment explanation
Indices: 14614341--14614816 Score: 582
Period size: 81 Copynumber: 5.9 Consensus size: 81
14614331 ATCTCCTAAA
* * * * * * *
14614341 GGTATATT-AATCATTTTACCCAAT-GGGGGTATTTTAGTCATTTTACCTTTTGAGTGTATTTTA
1 GGTAT-TTCAATCATTTTACCC-TTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCA
*
14614404 GTCATTTTACACTTCGAG
64 GTCATTTTACCCTTCGAG
* * * * *
14614422 GGTATTTCAATCATTTTACCCTTCG-GGAGTATTTCGATCATTTGACCCTACGAGGGTATTTCAA
1 GGTATTTCAATCATTTTACCCTTCGAGG-GTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAG
14614486 TCATTTTACCCTTCGAG
65 TCATTTTACCCTTCGAG
* * * *
14614503 GGTATTTCAGTGATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGT
1 GGTATTTCAATCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGT
14614568 CATTTTACCCTTCGAG
66 CATTTTACCCTTCGAG
* * * *
14614584 GGTATTTCAATCATTTTGCCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGC
1 GGTATTTCAATCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGT
* *
14614649 CCTTTTACCCTTTGAG
66 CATTTTACCCTTCGAG
* * * *
14614665 GGTATTTCAGTCATTTTACCCTTTGAGGGTATTTTGGTCATTTTACCCTTTGAAGGTATTTCTA-
1 GGTATTTCAATCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTC-AG
14614729 TCATTTTACCCTTCGAG
65 TCATTTTACCCTTCGAG
** * * * **
14614746 GGTATTTCGTTCATTTTACCATTTGAGGGTATTTTGGTCATTTTACCCTTCAAGGGTATTTTGGT
1 GGTATTTCAATCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGT
14614811 CATTTT
66 CATTTT
14614817 CCCACGAATC
Statistics
Matches: 346, Mismatches: 43, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
80 5 0.01
81 339 0.98
82 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (81 bp):
GGTATTTCAATCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGT
CATTTTACCCTTCGAG
Found at i:14632640 original size:19 final size:20
Alignment explanation
Indices: 14632609--14632651 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
14632599 CATATATACA
*
14632609 TAAATAATAAAATATGT-GT
1 TAAATAATAAAATAGGTAGT
14632628 TAAA-AATATAAATAGGTAGT
1 TAAATAATA-AAATAGGTAGT
14632648 TAAA
1 TAAA
14632652 CATTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.33
Consensus pattern (20 bp):
TAAATAATAAAATAGGTAGT
Found at i:14634747 original size:44 final size:44
Alignment explanation
Indices: 14634665--14635002 Score: 299
Period size: 44 Copynumber: 7.6 Consensus size: 44
14634655 TCAGTCTGCC
* * * *
14634665 TCACTACCAATATAAGAAGATAGGATCTGCTATT-TTCGATCCACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCT-TTCTTCGATCTACT
* * * * *
14634710 CCACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * * *
14634754 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* *
14634798 TCACTACCAATATAGGAAGACATGATCTG-TTATATTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTT-TCTTCGATCTACT
* * **
14634843 TCACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * * * *
14634887 TCGCCACCAGTATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
14634931 TCGCTACTAATATAGGAAGACAGGATCTG-TTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTT-TCTTCGATCTACT
* * *
14634976 TCACGCCAATACATGAAGACAAGATCT
1 TCACACCAATATAGGAAGACAAGATCT
14635003 ACTATTTTTT
Statistics
Matches: 232, Mismatches: 51, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
43 4 0.02
44 152 0.66
45 76 0.33
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (44 bp):
TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
Found at i:14634773 original size:89 final size:89
Alignment explanation
Indices: 14634670--14635002 Score: 307
Period size: 89 Copynumber: 3.8 Consensus size: 89
14634660 CTGCCTCACT
* * * * * *
14634670 ACCAATATAAGAAGATAGGATCTGCTATTTTCGATCCACTCCACGCCAATACATGAAGACAAGAT
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTCCACACCAATACAGGAAGACAAGAT
*
14634735 TTGCTTTCTTCGATCTACTTCGCC
66 CTGCTTTCTTCGATCTACTTCGCC
* * * *
14634759 ACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACTACCAATATAGGAAGACATGA
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTCCAC-ACCAATACAGGAAGACAAGA
* *
14634823 TCTG-TTATATTCGATCTACTTC-AC
65 TCTGCTT-TCTTCGATCTACTTCGCC
* * ** * * * **
14634847 GCCAATACATAAAGACAAGATCTGCTTTCTTCGATCTACTTCGC-CACCAGTATGGGAAGACAAG
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCAC-TC-CACACCAATACAGGAAGACAAG
* * *
14634911 ATCTGC-ATCTTCGATCCACTTCGCT
64 ATCTGCTTTCTTCGATCTACTTCGCC
* * * * * * *
14634936 ACTAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTCCACACCAATACAGGAAGACAAGAT
14635001 CT
66 CT
14635003 ACTATTTTTT
Statistics
Matches: 193, Mismatches: 43, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
87 1 0.01
88 72 0.37
89 117 0.61
90 2 0.01
91 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (89 bp):
ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTCCACACCAATACAGGAAGACAAGAT
CTGCTTTCTTCGATCTACTTCGCC
Found at i:14634825 original size:133 final size:133
Alignment explanation
Indices: 14634665--14635002 Score: 559
Period size: 133 Copynumber: 2.5 Consensus size: 133
14634655 TCAGTCTGCC
* * * * * *
14634665 TCACTACCAATATAAGAAGATAGGATCTGCTATTTTCGATCCACTCCACGCCAATACATGAAGAC
1 TCACTACCAATATAGGAAGACAGGATCTGTTATATTCGATCTACTTCACGCCAATACATGAAGAC
*
14634730 AAGATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
66 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
14634795 ACT
131 ACT
* *
14634798 TCACTACCAATATAGGAAGACATGATCTGTTATATTCGATCTACTTCACGCCAATACATAAAGAC
1 TCACTACCAATATAGGAAGACAGGATCTGTTATATTCGATCTACTTCACGCCAATACATGAAGAC
*
14634863 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
66 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
14634928 ACT
131 ACT
* * *
14634931 TCGCTACTAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 TCACTACCAATATAGGAAGACAGGATCTGTTATATTCGATCTACTTCACGCCAATACATGAAGAC
14634996 AAGATCT
66 AAGATCT
14635003 ACTATTTTTT
Statistics
Matches: 190, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 190 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (133 bp):
TCACTACCAATATAGGAAGACAGGATCTGTTATATTCGATCTACTTCACGCCAATACATGAAGAC
AAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
ACT
Found at i:14644724 original size:4 final size:4
Alignment explanation
Indices: 14644705--14644740 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
14644695 AATTACATAG
*
14644705 AAAT AATAT GAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
14644741 AATAATGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 26 0.90
5 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:14644744 original size:35 final size:35
Alignment explanation
Indices: 14644674--14644746 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
14644664 CCCTTAAACA
* * *
14644674 AATATCAATAATAAATACAACAATTACATAGAAAT
1 AATATCAATAATAAATACAACAAATAAATAAAAAT
* *
14644709 AATATGAATAAATAAATA-AATAAATAAATAAAAAT
1 AATATCAAT-AATAAATACAACAAATAAATAAAAAT
14644744 AAT
1 AAT
14644747 GACATGCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 24 0.75
36 8 0.25
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (35 bp):
AATATCAATAATAAATACAACAAATAAATAAAAAT
Found at i:14654053 original size:20 final size:20
Alignment explanation
Indices: 14654028--14654103 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
14654018 GCGCGCTTGG
*
14654028 TGCCTCTTTTTGCACTTCGA
1 TGCCTCTGTTTGCACTTCGA
*
14654048 TGCCTCTGTTTGCACTTCAA
1 TGCCTCTGTTTGCACTTCGA
* ** * *
14654068 TTCCTCTGCATACACTTCGG
1 TGCCTCTGTTTGCACTTCGA
14654088 TGTCC-CTGTTTGCACT
1 TG-CCTCTGTTTGCACT
14654104 ATGGTGCCCC
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.12, C:0.32, G:0.16, T:0.41
Consensus pattern (20 bp):
TGCCTCTGTTTGCACTTCGA
Found at i:14654109 original size:20 final size:20
Alignment explanation
Indices: 14654086--14654136 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
14654076 CATACACTTC
14654086 GGTGTCCCTGTTTGCAC-TAT
1 GGTGTCCCTGTTTGCACAT-T
* *
14654106 GGTGCCCCTATTTGCACATT
1 GGTGTCCCTGTTTGCACATT
*
14654126 TGTGTCCCTGT
1 GGTGTCCCTGT
14654137 CAGCACTTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.10, C:0.27, G:0.24, T:0.39
Consensus pattern (20 bp):
GGTGTCCCTGTTTGCACATT
Found at i:14658965 original size:234 final size:234
Alignment explanation
Indices: 14658556--14659029 Score: 869
Period size: 234 Copynumber: 2.0 Consensus size: 234
14658546 TCTCACTATT
*
14658556 TAGGATAAAGTTGTCCACTCGCGCAGCAGTCACTAAATCATTTATAACTCGAGCTACAGAATTCA
1 TAGGATAAAGCTGTCCACTCGCGCAGCAGTCACTAAATCATTTATAACTCGAGCTACAGAATTCA
14658621 AAATTTAAATCCGTAAATTTTCCCTGAAACTAGACTTATATATCATCTTACCATAAGTTTTTCAG
66 AAATTTAAATCCGTAAATTTTCCCTGAAACTAGACTTATATATCATCTTACCATAAGTTTTTCAG
*
14658686 AATTTTCAGTTCAGCCAATTAGTACAATTCATTAGTTAAAGTCTCCTCTATTTCACCACTCGACT
131 AATTTTCAGTTCAGCCAATTAGTACAATTCATTAGTTAAAGTCTCCCCTATTTCACCACTCGACT
14658751 GTCCTGACCTCTTGCCACTAAAAATAAGTTTTCTCATTG
196 GTCCTGACCTCTTGCCACTAAAAATAAGTTTTCTCATTG
*
14658790 TAGGATAAAGCTGTCCACTCGCGCAGTAGTCACTAAATCATTTATAACTCGAGCTACAGAATTCA
1 TAGGATAAAGCTGTCCACTCGCGCAGCAGTCACTAAATCATTTATAACTCGAGCTACAGAATTCA
*
14658855 AAATTTAAATCCGTAAATTTTCCCTGAAACTAGACTTATATATCATCTTACCATAAGTTTTTTAG
66 AAATTTAAATCCGTAAATTTTCCCTGAAACTAGACTTATATATCATCTTACCATAAGTTTTTCAG
* * *
14658920 AATTTTC-GATTTAGCCAATTAGTACAATTTATTAGTTAAAGTCTCCCCTATTTCACCACTCGGC
131 AATTTTCAG-TTCAGCCAATTAGTACAATTCATTAGTTAAAGTCTCCCCTATTTCACCACTCGAC
14658984 TGTCCTGACCTCTTGCCACTAAAAATAAGTTTTCTCATTG
195 TGTCCTGACCTCTTGCCACTAAAAATAAGTTTTCTCATTG
14659024 TAGGAT
1 TAGGAT
14659030 TTTCATATGG
Statistics
Matches: 232, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
233 1 0.00
234 231 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (234 bp):
TAGGATAAAGCTGTCCACTCGCGCAGCAGTCACTAAATCATTTATAACTCGAGCTACAGAATTCA
AAATTTAAATCCGTAAATTTTCCCTGAAACTAGACTTATATATCATCTTACCATAAGTTTTTCAG
AATTTTCAGTTCAGCCAATTAGTACAATTCATTAGTTAAAGTCTCCCCTATTTCACCACTCGACT
GTCCTGACCTCTTGCCACTAAAAATAAGTTTTCTCATTG
Found at i:14660049 original size:49 final size:49
Alignment explanation
Indices: 14659996--14660112 Score: 132
Period size: 49 Copynumber: 2.4 Consensus size: 49
14659986 CAAAGCCATG
* *
14659996 TCCCAGACATGGTCTTACATGGGATGTT-TCATGTAC-TG-CCAATGACATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATAT-CGTGTCC-ATGACATA
* * *
14660045 TCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTGTCCATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATC-GTGTCCATGACATA
14660095 TCCCAGACATGGTCTTAC
1 TCCCAGACATGGTCTTAC
14660113 GGGGGACCTC
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
48 4 0.07
49 27 0.47
50 25 0.43
51 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATCGTGTCCATGACATA
Found at i:14660108 original size:50 final size:50
Alignment explanation
Indices: 14659983--14660168 Score: 200
Period size: 50 Copynumber: 3.7 Consensus size: 50
14659973 GATAATAACA
* *
14659983 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * * *
14660032 TGCCAATGACATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
** ** *
14660082 TGTCC-ATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* *
14660132 TGCCAACGCCATGTCCCAGACATCGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
14660169 TCTCTTTACC
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
48 4 0.04
49 39 0.35
50 68 0.60
51 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:14661530 original size:138 final size:137
Alignment explanation
Indices: 14661351--14661788 Score: 583
Period size: 138 Copynumber: 3.2 Consensus size: 137
14661341 AGACATTACA
** * *
14661351 AATATTCTTTTAAAAAGAATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATA
1 AATATTCTTTTGGAAAGAATATAAATAATATATGAATTTGATTCATACAAAATATTAATTGTATA
* *
14661416 TATTTTATCGAATTTATTAATATAAGAAGTTATGTTAATTAATTTCGATCAAAATATATAAGACA
66 TATTTTA-CGAATTTATTAATATAAGAAGTTATATTAATTAATTTCGATCAAAATATAAAAGACA
*
14661481 TGAAAATT
130 TGGAAATT
* * * *
14661489 AAAATTCTTTTGGAAAGAATGTAACTAATATATGAATTTGATTCATACAAAATATTCATTGTATA
1 AATATTCTTTTGGAAAGAATATAAATAATATATGAATTTGATTCATACAAAATATTAATTGTATA
* * * **
14661554 TACTTTACCGAATTTATTAATATAAGTAGTTATATTAATTAATTTCGGTCAAAATATAAAAGATG
66 TATTTTA-CGAATTTATTAATATAAGAAGTTATATTAATTAATTTCGATCAAAATATAAAAGACA
*
14661619 TGGGAATT
130 TGGAAATT
* *
14661627 AATATTCTTTTCGAAATAATATAAATAATATATGAATTTGATTCATACAAAATATTAATTGTATA
1 AATATTCTTTTGGAAAGAATATAAATAATATATGAATTTGATTCATACAAAATATTAATTGTATA
* * * * * * *
14661692 TATTTTACTAGGTTTACTAATATAA-ATAATTATATTTATTAA-TTCTAGTTAAAATATAAAAGA
66 TATTTTACGA-ATTTATTAATATAAGA-AGTTATATTAATTAATTTCGA-TCAAAATATAAAAGA
14661755 CATGGAAATT
128 CATGGAAATT
14661765 AATATTCTTTTGGAAAGAATATAA
1 AATATTCTTTTGGAAAGAATATAA
14661789 TTTGTTTTTC
Statistics
Matches: 259, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
137 5 0.02
138 254 0.98
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (137 bp):
AATATTCTTTTGGAAAGAATATAAATAATATATGAATTTGATTCATACAAAATATTAATTGTATA
TATTTTACGAATTTATTAATATAAGAAGTTATATTAATTAATTTCGATCAAAATATAAAAGACAT
GGAAATT
Found at i:14666061 original size:17 final size:18
Alignment explanation
Indices: 14666029--14666064 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14666019 TCCCAACCCA
14666029 ATGCATATGCAATATCTC
1 ATGCATATGCAATATCTC
*
14666047 ATGCATA-GTAATATCTC
1 ATGCATATGCAATATCTC
14666064 A
1 A
14666065 ATACTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33
Consensus pattern (18 bp):
ATGCATATGCAATATCTC
Found at i:14668808 original size:140 final size:140
Alignment explanation
Indices: 14668559--14669362 Score: 726
Period size: 140 Copynumber: 5.8 Consensus size: 140
14668549 TTTTGGGGAG
* * * * *
14668559 ACACTTTTCTAAGTGTTGGGATAGACATGTCGACATACATTTTGGCCAATTCTTTGTATAAGAGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAATTCTTTATATAAGAGT
* ** *
14668624 TGGGATATGCATGCCTAAGGTAA-TGCTTAAATATTAGTCGGCTTTGTCCAACACTATGCCAAAA
66 TGGGATATGCATGCCTAAGGAAACT-CTTAAATAAGAGTCAGCTTTGTCCAACACTATGCCAAAA
*
14668688 CTTTTGGGCCA
130 CTTTTGGGCTA
* ** * * * *
14668699 ACACTTTCCTAAGTGTTAGGATAGACTTCCCGATATGCACTTTGGCCAATTCTCTATATAGGATT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAATTCTTTATATAAGAGT
* ** *
14668764 TGGGATATGCATGCCTAAGGAAACTTTTAAATAAGAGTCAGCTTTGTCCAACACTATGTTGACAA
66 TGGGATATGCATGCCTAAGGAAACTCTTAAATAAGAGTCAGCTTTGTCCAACACTATG-CCAAAA
*
14668829 -TTTTGGGCTT
130 CTTTTGGGCTA
14668839 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAACTT-TTTATATAAGAG
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAA-TTCTTTATATAAGAG
* * * * * * *
14668903 TTGGGATATGCATGCCTAAAGCAACACTGAAATAAGAG-CCGACTTTGTCCAACACTATGCCGAC
65 TTGGGATATGCATGCCTAAGGAAACTCTTAAATAAGAGTCAG-CTTTGTCCAACACTATGCCAAA
14668967 ACTTTTGGGCTA
129 ACTTTTGGGCTA
* * ** *
14668979 ACAGTTTCCTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAACCCTTTGTATAAGAGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAATTCTTTATATAAGAGT
* * * *
14669044 TGGGATATGCATGCCTAA-GACAA-TGCTTAATTCAA-AGTCTGCTTTGTTCAACACCATG-C--
66 TGGGATATGCATGCCTAAGGA-AACT-CTTAAAT-AAGAGTCAGCTTTGTCCAACACTATGCCAA
14669103 --C------G---
128 AACTTTTGGGCTA
* ** ** * * * *
14669105 ACACTTTGCTAAGTGTTGGGATAGACTTGTCGGCATACGTTTTGGCCAACTCTTTGTATAAAAAT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAATTCTTTATATAAGAGT
* * * * * *
14669170 TGGTATATACATGCCTAAGGCAACACTTAAATAAGAGTC-GACTTTGTCCAACACTATGCCGACA
66 TGGGATATGCATGCCTAAGGAAACTCTTAAATAAGAGTCAG-CTTTGTCCAACACTATGCCAAAA
* *
14669234 CTTTTGGCCCA
130 CTTTTGGGCTA
* * * * **
14669245 ACACTTTCCTAAATGTTGGGATAAAATTGCTC-ACATATGCTTTGGCCAACTT-TTTGCATA-AA
1 ACACTTTCCTAAGTGTTGGGATAGACTTG-TCGATATACACTTTGGCCAA-TTCTTT--ATATAA
* * *
14669307 G-GTTGGGATATGCATGCCTAAGGCAA-TGCTTAAATAAGAGTCAGTTTTATCCAACA
62 GAGTTGGGATATGCATGCCTAAGGAAACT-CTTAAATAAGAGTCAGCTTTGTCCAACA
14669363 TCATGCCGAC
Statistics
Matches: 543, Mismatches: 87, Indels: 68
0.78 0.12 0.10
Matches are distributed among these distances:
125 3 0.01
126 98 0.18
127 2 0.00
129 1 0.00
131 1 0.00
135 1 0.00
139 5 0.01
140 414 0.76
141 16 0.03
142 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (140 bp):
ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAATTCTTTATATAAGAGT
TGGGATATGCATGCCTAAGGAAACTCTTAAATAAGAGTCAGCTTTGTCCAACACTATGCCAAAAC
TTTTGGGCTA
Found at i:14669206 original size:266 final size:266
Alignment explanation
Indices: 14668839--14669339 Score: 725
Period size: 266 Copynumber: 1.9 Consensus size: 266
14668829 TTTTGGGCTT
* * * *
14668839 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGATATACACTTTGGCCAACTTTTTATATAAGAGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACTCTTTATATAAAAAT
*
14668904 TGGGATATGCATGCCTAAAGCAACACTGAAATAAGAGCCGACTTTGTCCAACACTATGCCGACAC
66 TGGGATATACATGCCTAAAGCAACACTGAAATAAGAGCCGACTTTGTCCAACACTATGCCGACAC
* * * * * * * * *
14668969 TTTTGGGCTAACAGTTTCCTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAACCCTTT
131 TTTTGGCCCAACACTTTCCTAAATGTTGGGATAAAATTGCTCACATACACTTTGGCCAACCCTTT
*
14669034 GTAT-AAGAGTTGGGATATGCATGCCTAAGACAATGCTTAATTCAAAGTCTGCTTTGTTCAACAC
196 GCATAAAG-GTTGGGATATGCATGCCTAAGACAATGCTTAATTCAAAGTCTGCTTTGTTCAACAC
14669098 CATGCCG
260 CATGCCG
* * ** *
14669105 ACACTTTGCTAAGTGTTGGGATAGACTTGTCGGCATACGTTTTGGCCAACTCTTTGTATAAAAAT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACTCTTTATATAAAAAT
* * * *
14669170 TGGTATATACATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCGACAC
66 TGGGATATACATGCCTAAAGCAACACTGAAATAAGAGCCGACTTTGTCCAACACTATGCCGACAC
** **
14669235 TTTTGGCCCAACACTTTCCTAAATGTTGGGATAAAATTGCTCACATATGCTTTGGCCAACTTTTT
131 TTTTGGCCCAACACTTTCCTAAATGTTGGGATAAAATTGCTCACATACACTTTGGCCAACCCTTT
*
14669300 GCATAAAGGTTGGGATATGCATGCCTAAGGCAATGCTTAA
196 GCATAAAGGTTGGGATATGCATGCCTAAGACAATGCTTAA
14669340 ATAAGAGTCA
Statistics
Matches: 205, Mismatches: 29, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
266 202 0.99
267 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (266 bp):
ACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACTCTTTATATAAAAAT
TGGGATATACATGCCTAAAGCAACACTGAAATAAGAGCCGACTTTGTCCAACACTATGCCGACAC
TTTTGGCCCAACACTTTCCTAAATGTTGGGATAAAATTGCTCACATACACTTTGGCCAACCCTTT
GCATAAAGGTTGGGATATGCATGCCTAAGACAATGCTTAATTCAAAGTCTGCTTTGTTCAACACC
ATGCCG
Found at i:14669215 original size:126 final size:126
Alignment explanation
Indices: 14668987--14669237 Score: 326
Period size: 126 Copynumber: 2.0 Consensus size: 126
14668977 TAACAGTTTC
* * * *
14668987 CTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAACCCTTTGTATAAGAGTTGGGATAT
1 CTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTGTATAAAAATTGGGATAT
* ** * *
14669052 GCATGCCTAAGACAATGCTTAATTCAAAGTCTGCTTTGTTCAACACCATGCCGACACTTTG
66 ACATGCCTAAGACAACACTTAAATCAAAGTCTGCTTTGTCCAACACCATGCCGACACTTTG
* ** * *
14669113 CTAAGTGTTGGGATAGACTTGTCGGCATACGTTTTGGCCAACTCTTTGTATAAAAATTGGTATAT
1 CTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTGTATAAAAATTGGGATAT
* *
14669178 ACATGCCTAAGGCAACACTTAAAT-AAGAGTC-GACTTTGTCCAACACTATGCCGACACTTT
66 ACATGCCTAAGACAACACTTAAATCAA-AGTCTG-CTTTGTCCAACACCATGCCGACACTTT
14669238 TGGCCCAACA
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
125 3 0.03
126 104 0.97
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (126 bp):
CTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTGTATAAAAATTGGGATAT
ACATGCCTAAGACAACACTTAAATCAAAGTCTGCTTTGTCCAACACCATGCCGACACTTTG
Found at i:14671428 original size:27 final size:25
Alignment explanation
Indices: 14671373--14671500 Score: 69
Period size: 27 Copynumber: 4.8 Consensus size: 25
14671363 ATCATAAAGC
*
14671373 TATAACAGTCATTTCATCTCCTAGGGG
1 TATAACAGTCATTTTA-C-CCTAGGGG
*
14671400 TATAACAGTCATTTTACCTTATGGTGG
1 TATAACAGTCATTTTACCCTA-GG-GG
*** *
14671427 TATTTTAGTCATTTTACCCTTCGGGAG
1 TATAACAGTCATTTTACCC-TAGGG-G
**
14671454 TATTTC-GTTCATTTTACCCTATAGGGG
1 TATAACAG-TCATTTTACCC--TAGGGG
** *
14671481 TATTTCAATCATTTTACCCT
1 TATAACAGTCATTTTACCCT
14671501 TCGGGGGTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
25 4 0.05
26 5 0.06
27 69 0.83
28 5 0.06
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.42
Consensus pattern (25 bp):
TATAACAGTCATTTTACCCTAGGGG
Found at i:14671507 original size:27 final size:27
Alignment explanation
Indices: 14671407--14671606 Score: 208
Period size: 27 Copynumber: 7.4 Consensus size: 27
14671397 GGGTATAACA
* * **
14671407 GTCATTTTA-CCTTATGGTGGTATTTTA
1 GTCATTTTACCCTT-CGGGGGTATTTCG
*
14671434 GTCATTTTACCCTTCGGGAGTATTTCG
1 GTCATTTTACCCTTCGGGGGTATTTCG
* * *
14671461 TTCATTTTACCCTAT-AGGGGTATTTCA
1 GTCATTTTACCCT-TCGGGGGTATTTCG
* *
14671488 ATCATTTTACCCTTCGGGGGTATTTTG
1 GTCATTTTACCCTTCGGGGGTATTTCG
* *
14671515 GTCATTTTATCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGGGGGTATTTCG
* **
14671542 GTCATTTTACCTTTCGAAGGTATTTCG
1 GTCATTTTACCCTTCGGGGGTATTTCG
* *
14671569 GTCATTTTACCCTTCGAGGGTATTTCA
1 GTCATTTTACCCTTCGGGGGTATTTCG
14671596 GTCA-TTTACCC
1 GTCATTTTACCC
14671607 ACGAATAGCA
Statistics
Matches: 147, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 8 0.05
27 134 0.91
28 5 0.03
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTTCGGGGGTATTTCG
Found at i:14678594 original size:26 final size:26
Alignment explanation
Indices: 14678523--14678588 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
14678513 ACACACCAAT
*
14678523 ATCGCAGCAAAGCTGCCAGTAATAGA
1 ATCGCAGCGAAGCTGCCAGTAATAGA
* *
14678549 ATTGTAGCGAAGCTGCCAGTAATAGA
1 ATCGCAGCGAAGCTGCCAGTAATAGA
*
14678575 ATCGCAGTGAAGCT
1 ATCGCAGCGAAGCT
14678589 TTCAGTTACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (26 bp):
ATCGCAGCGAAGCTGCCAGTAATAGA
Found at i:14678830 original size:27 final size:27
Alignment explanation
Indices: 14678810--14679048 Score: 96
Period size: 27 Copynumber: 8.8 Consensus size: 27
14678800 TACCTTATTG
*
14678810 GGGTATTTTAGTTATTTTACCCTAAGA
1 GGGTATTTTAGTCATTTTACCCTAAGA
* * *
14678837 GGGTATTTTGGTCATTTTACTC-AACCGG
1 GGGTATTTTAGTCATTTTACCCTAA--GA
** *
14678865 GGGTA-TTCCGATCATTTTACCCTTCA-A
1 GGGTATTTTAG-TCATTTTACCC-TAAGA
* * * *
14678892 GGGTATTTCAATCATTTTACTC-AACCA
1 GGGTATTTTAGTCATTTTACCCTAA-GA
* * **
14678919 GGTTA-TTTCGATCATTTTACCCTTTG-
1 GGGTATTTTAG-TCATTTTACCCTAAGA
* **
14678945 GCGGTATTTTAATCATTTTACCCTTCGA
1 G-GGTATTTTAGTCATTTTACCCTAAGA
** **
14678973 GGGTATTTCGGTCATTTTACCCTTCG-
1 GGGTATTTTAGTCATTTTACCCTAAGA
** ** *
14678999 GAGGTATTTCGGTCATTTTACCCTTCGG
1 G-GGTATTTTAGTCATTTTACCCTAAGA
* *
14679027 GGGTATTTCACTCATTTTACCC
1 GGGTATTTTAGTCATTTTACCC
14679049 ACGAATCGCA
Statistics
Matches: 167, Mismatches: 30, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
25 1 0.01
26 6 0.04
27 135 0.81
28 24 0.14
30 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTCATTTTACCCTAAGA
Found at i:14678959 original size:54 final size:53
Alignment explanation
Indices: 14678823--14679007 Score: 190
Period size: 54 Copynumber: 3.4 Consensus size: 53
14678813 TATTTTAGTT
* ** * *
14678823 ATTTTACCCTAAGAGGGTATTTTGGTCATTTTACTCAACCGGGGGTATTCCGATC
1 ATTTTACCCTTAG-GGGTATTTTAATCATTTTACTCAACC-AGGGTATTTCGATC
* * *
14678878 ATTTTACCCTTCAAGGGTATTTCAATCATTTTACTCAACCAGGTTATTTCGATC
1 ATTTTACCCTT-AGGGGTATTTTAATCATTTTACTCAACCAGGGTATTTCGATC
* * ** * *
14678932 ATTTTACCCTTTGGCGGTATTTTAATCATTTTACCCTTCGAGGGTATTTCGGTC
1 ATTTTACCCTTAGG-GGTATTTTAATCATTTTACTCAACCAGGGTATTTCGATC
*
14678986 ATTTTACCCTTCGGAGGTATTT
1 ATTTTACCCTTAGG-GGTATTT
14679008 CGGTCATTTT
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 74 0.68
55 33 0.30
56 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (53 bp):
ATTTTACCCTTAGGGGTATTTTAATCATTTTACTCAACCAGGGTATTTCGATC
Found at i:14678979 original size:81 final size:81
Alignment explanation
Indices: 14678866--14679048 Score: 224
Period size: 81 Copynumber: 2.3 Consensus size: 81
14678856 CTCAACCGGG
* * *
14678866 GGTATTCCGATCATTTTACCCTTCAAGGGTATTTCAATCATTTTACTCAAC-CAGGTTATTTCGA
1 GGTATTTCAATCATTTTACCCTTCAAGGGTATTTCAATCATTTTACCCAACGCAGG-TATTTCGA
*
14678930 TCATTTTACCCTTTGGC
65 TCATTTTACCCTTCGGC
* * ** ** * *
14678947 GGTATTTTAATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGGAGGTATTTCGGT
1 GGTATTTCAATCATTTTACCCTTCAAGGGTATTTCAATCATTTTACCCAACGCAGGTATTTCGAT
*
14679012 CATTTTACCCTTCGGG
66 CATTTTACCCTTCGGC
*
14679028 GGTATTTCACTCATTTTACCC
1 GGTATTTCAATCATTTTACCC
14679049 ACGAATCGCA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 83 0.97
82 3 0.03
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (81 bp):
GGTATTTCAATCATTTTACCCTTCAAGGGTATTTCAATCATTTTACCCAACGCAGGTATTTCGAT
CATTTTACCCTTCGGC
Found at i:14679015 original size:54 final size:54
Alignment explanation
Indices: 14678865--14679048 Score: 201
Period size: 54 Copynumber: 3.4 Consensus size: 54
14678855 ACTCAACCGG
* * * * *
14678865 GGGTATTCCGATCATTTTACCCTTC-AAGGGTATTTCAATCATTTTACTCAACCA
1 GGGTATTTCGATCATTTTACCCTTCGGA-GGTATTTCAATCATTTTACCCATCGA
* * * * *
14678919 GGTTATTTCGATCATTTTACCCTTTGGCGGTATTTTAATCATTTTACCCTTCGA
1 GGGTATTTCGATCATTTTACCCTTCGGAGGTATTTCAATCATTTTACCCATCGA
* ** * *
14678973 GGGTATTTCGGTCATTTTACCCTTCGGAGGTATTTCGGTCATTTTACCCTTCGG
1 GGGTATTTCGATCATTTTACCCTTCGGAGGTATTTCAATCATTTTACCCATCGA
14679027 GGGTATTTC-ACTCATTTTACCC
1 GGGTATTTCGA-TCATTTTACCC
14679049 ACGAATCGCA
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
54 109 1.00
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (54 bp):
GGGTATTTCGATCATTTTACCCTTCGGAGGTATTTCAATCATTTTACCCATCGA
Found at i:14684088 original size:7 final size:7
Alignment explanation
Indices: 14684063--14684108 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
14684053 ATTCAATCTT
14684063 TATTTTA
1 TATTTTA
14684070 -ATTTTA
1 TATTTTA
14684076 -ATTTTA
1 TATTTTA
14684082 TATTTTA
1 TATTTTA
14684089 TATTTTA
1 TATTTTA
14684096 TATTTTA
1 TATTTTA
14684103 TATTTT
1 TATTTT
14684109 TTTAGTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 12 0.32
7 26 0.68
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTTA
Found at i:14684305 original size:36 final size:36
Alignment explanation
Indices: 14684216--14684677 Score: 354
Period size: 36 Copynumber: 12.7 Consensus size: 36
14684206 CATTATACGT
* * ** *
14684216 GTCTATCCCAATCTTTTTAAGGTTAGCTTAGAC-GG
1 GTCTATCCCAACCTTTTAAAGGTTTCCTTAGACAAG
*
14684251 GTTTATCCCAACCTCTTTTAAAGGTTTCCTTAGACAAG
1 GTCTATCCCAA-C-CTTTTAAAGGTTTCCTTAGACAAG
* * * * * *
14684289 ATTTATCCCAACCTTTTTAAGGTTGCTTTA-A-ATGG
1 GTCTATCCCAACCTTTTAAAGGTTTCCTTAGACA-AG
*
14684324 GTCTATCCCAACCTTTTCTAAA-ATTTGCCTTAGACAAG
1 GTCTATCCCAACC-TTT-TAAAGGTTT-CCTTAGACAAG
* * *
14684362 GTCTATCCCAACCTTTTTAAGGTTTCCTTAAACGA-
1 GTCTATCCCAACCTTTTAAAGGTTTCCTTAGACAAG
* * *
14684397 GTCTATTCCAACCTTTTTAAAGGTTACCTTAGACATG
1 GTCTATCCCAACC-TTTTAAAGGTTTCCTTAGACAAG
* * *
14684434 GTCTATCCCAA-CTTGTTTAAGGTTGCCTTAGA-TAG
1 GTCTATCCCAACCTT-TTAAAGGTTTCCTTAGACAAG
*
14684469 GTCTATCCCAACCTTTTTTTATAGGTTGT-CTTAGACAAG
1 GTCTATCCCAACC---TTTTAAAGGTT-TCCTTAGACAAG
* * *
14684508 GTCTATCCCAACCTTTTTAAA-CTTGCCTTAG--ATG
1 GTCTATCCCAACC-TTTTAAAGGTTTCCTTAGACAAG
* *
14684542 GCTCTATCCCAACCATTTTTAAAAGTTACCTTAGACAAG
1 G-TCTATCCCAACC--TTTTAAAGGTTTCCTTAGACAAG
* * * *
14684581 GACTATACCAACCTTTTTAAGATTTCCTTAGACAAG
1 GTCTATCCCAACCTTTTAAAGGTTTCCTTAGACAAG
* * *
14684617 GTCTATCCCAACCTTTTTAAGGTTACCTTAGACGA-
1 GTCTATCCCAACCTTTTAAAGGTTTCCTTAGACAAG
*
14684652 GTCTATCCTAACCTTTTTTAAAGGTT
1 GTCTATCCCAACC--TTTTAAAGGTT
14684678 GGTCTGGACT
Statistics
Matches: 343, Mismatches: 57, Indels: 52
0.76 0.13 0.12
Matches are distributed among these distances:
34 4 0.01
35 73 0.21
36 129 0.38
37 67 0.20
38 49 0.14
39 21 0.06
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (36 bp):
GTCTATCCCAACCTTTTAAAGGTTTCCTTAGACAAG
Found at i:14684355 original size:73 final size:72
Alignment explanation
Indices: 14684216--14684678 Score: 495
Period size: 73 Copynumber: 6.3 Consensus size: 72
14684206 CATTATACGT
* * * * *
14684216 GTCTATCCCAATCTTTTTAAGGTTAG-CTTAGACGGGTTTATCCCAACCTCTTTTAAAGGTTTCC
1 GTCTATCCCAACCTTTTTAAGGTT-GCCTTAAATGGGTCTATCCCAACCT-TTTTAAAGGTTACC
14684280 TTAGACAAG
64 TTAGACAAG
* * * ** *
14684289 ATTTATCCCAACCTTTTTAAGGTTGCTTTAAATGGGTCTATCCCAACCTTTTCTAAAATTTGCCT
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAAATGGGTCTATCCCAACCTTTT-TAAAGGTTACCT
14684354 TAGACAAG
65 TAGACAAG
* * * *
14684362 GTCTATCCCAACCTTTTTAAGGTTTCCTTAAACGAGTCTATTCCAACCTTTTTAAAGGTTACCTT
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAAATGGGTCTATCCCAACCTTTTTAAAGGTTACCTT
*
14684427 AGACATG
66 AGACAAG
* * * **
14684434 GTCTATCCCAA-CTTGTTTAAGGTTGCCTTAGATAGGTCTATCCCAACCTTTTTTTATAGGTTGT
1 GTCTATCCCAACCTT-TTTAAGGTTGCCTTAAATGGGTCTATCCCAACC--TTTTTAAAGGTTAC
14684498 CTTAGACAAG
63 CTTAGACAAG
** * * *
14684508 GTCTATCCCAACCTTTTTAAACTTGCCTTAGATGGCTCTATCCCAACCATTTTTAAAAGTTACCT
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAAATGGGTCTATCCCAACC-TTTTTAAAGGTTACCT
14684573 TAGACAAG
65 TAGACAAG
* * * * *
14684581 GACTATACCAACCTTTTTAAGATTTCCTTAGACA-AGGTCTATCCCAACCTTTTT-AAGGTTACC
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTA-A-ATGGGTCTATCCCAACCTTTTTAAAGGTTACC
*
14684644 TTAGACGA-
64 TTAGACAAG
*
14684652 GTCTATCCTAACCTTTTTTAAAGGTTG
1 GTCTATCCCAACC-TTTTT-AAGGTTG
14684679 GTCTGGACTA
Statistics
Matches: 325, Mismatches: 55, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
71 13 0.04
72 78 0.24
73 157 0.48
74 73 0.22
75 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (72 bp):
GTCTATCCCAACCTTTTTAAGGTTGCCTTAAATGGGTCTATCCCAACCTTTTTAAAGGTTACCTT
AGACAAG
Found at i:14684594 original size:219 final size:218
Alignment explanation
Indices: 14684216--14684649 Score: 599
Period size: 219 Copynumber: 2.0 Consensus size: 218
14684206 CATTATACGT
* *
14684216 GTCTATCCCAATCTTTTTAAGGTTAGCTTAGACGGGTTTATCCCAACCTCTTTTAAAGGTTTCCT
1 GTCTATCCCAATCTTTTTAAGGTTAGCTTAGACAGGTCTATCCCAACCTCTTTTAAAGGTTTCCT
* ** * *
14684281 TAGACAAGATTTATCCCAACCTTTTTAAGGTTGCTTTAAATGGGTCTATCCCAACCTTTTCTAAA
66 TAGACAAGATCTATCCCAACCTTTTTAAACTTGCCTTAAATGGCTCTATCCCAACCTTTTCTAAA
* * * * * * *
14684346 ATTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTTCCTTAAACGA-GTCTATTCCAACC
131 AGTTACCTTAGACAAGGACTATACCAACCTTTTTAAGATTTCCTTAAACAAGGTCTATCCCAACC
14684410 TTTTTAAAGGTTACCTTAGACATG
196 TTTTT-AAGGTTACCTTAGACATG
* * *
14684434 GTCTATCCCAA-CTTGTTTAAGGTT-GCCTTAGATAGGTCTATCCCAACCTTTTTTTATAGGTTG
1 GTCTATCCCAATCTT-TTTAAGGTTAG-CTTAGACAGGTCTATCCCAACC-TCTTTTAAAGGTT-
* *
14684497 T-CTTAGACAAGGTCTATCCCAACCTTTTTAAACTTGCCTTAGATGGCTCTATCCCAACCATTTT
62 TCCTTAGACAAGATCTATCCCAACCTTTTTAAACTTGCCTTAAATGGCTCTATCCCAACC-TTTT
*
14684561 -TAAAAGTTACCTTAGACAAGGACTATACCAACCTTTTTAAGATTTCCTTAGACAAGGTCTATCC
126 CTAAAAGTTACCTTAGACAAGGACTATACCAACCTTTTTAAGATTTCCTTAAACAAGGTCTATCC
14684625 CAACCTTTTTAAGGTTACCTTAGAC
191 CAACCTTTTTAAGGTTACCTTAGAC
14684650 GAGTCTATCC
Statistics
Matches: 190, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
217 4 0.02
218 39 0.21
219 125 0.66
220 22 0.12
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (218 bp):
GTCTATCCCAATCTTTTTAAGGTTAGCTTAGACAGGTCTATCCCAACCTCTTTTAAAGGTTTCCT
TAGACAAGATCTATCCCAACCTTTTTAAACTTGCCTTAAATGGCTCTATCCCAACCTTTTCTAAA
AGTTACCTTAGACAAGGACTATACCAACCTTTTTAAGATTTCCTTAAACAAGGTCTATCCCAACC
TTTTTAAGGTTACCTTAGACATG
Found at i:14684702 original size:109 final size:109
Alignment explanation
Indices: 14684216--14684678 Score: 489
Period size: 109 Copynumber: 4.2 Consensus size: 109
14684206 CATTATACGT
* * *
14684216 GTCTATCCCAATC-TTTTT-AAGGTTAG-CTTAGAC-GGGTTTATCCCAACCTCTTTTAAAGGTT
1 GTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACAAGGTCTATCCCAACCT-TTTT-AAGGTT
* * * * * * *
14684277 TCCTTAGACAAGATTTATCCCAACCTTTTTAAGGTTGCTTTAAATGG
63 TCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTACCTTAGACGA
* **
14684324 GTCTATCCCAACCTTTTCTAAAATTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTTCC
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTTCC
* * *
14684389 TTAAACGA-GTCTATTCCAACCTTTTTAAAGGTTACCTTAGAC-A
66 TTAGACAAGGTCTATCCCAACCTTTTT-AAGGTTACCTTAGACGA
* *
14684432 TGGTCTATCCCAA-CTTGTTT-AAGGTTGCCTTAGA-TAGGTCTATCCCAACCTTTTTTTATAGG
1 --GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACC--TTTTTA-AGG
** * *
14684494 TTGT-CTTAGACAAGGTCTATCCCAACCTTTTTAAACTTGCCTTAGATG-
61 TT-TCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTACCTTAGACGA
* * * * * *
14684542 GCTCTATCCCAACCATTTTTAAAAGTTACCTTAGACAAGGACTATACCAACCTTTTTAAGATTTC
1 G-TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTTC
14684607 CTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTACCTTAGACGA
65 CTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTACCTTAGACGA
*
14684652 GTCTATCCTAACCTTTTTTAAAGGTTG
1 GTCTATCCCAACCTTTTTTAAAGGTTG
14684679 GTCTGGACTA
Statistics
Matches: 292, Mismatches: 44, Indels: 37
0.78 0.12 0.10
Matches are distributed among these distances:
107 15 0.05
108 41 0.14
109 118 0.40
110 61 0.21
111 44 0.15
112 13 0.04
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (109 bp):
GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTTCC
TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTACCTTAGACGA
Found at i:14693377 original size:28 final size:27
Alignment explanation
Indices: 14693320--14693469 Score: 228
Period size: 27 Copynumber: 5.5 Consensus size: 27
14693310 TAAATTGTGC
*
14693320 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
14693347 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
14693375 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
14693402 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* * *
14693430 AGCACTAACTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
14693457 AGCACTGAGTGTG
1 AGCACTAAGTGTG
14693470 TGGACTTAAT
Statistics
Matches: 115, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 63 0.55
28 52 0.45
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:14693384 original size:55 final size:55
Alignment explanation
Indices: 14693320--14693469 Score: 246
Period size: 55 Copynumber: 2.7 Consensus size: 55
14693310 TAAATTGTGC
*
14693320 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
14693375 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
14693430 AGCACTAACTGTGCGAGTTGATTATATAGCACTGAGTGTG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTG
14693470 TGGACTTAAT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:14697946 original size:16 final size:16
Alignment explanation
Indices: 14697925--14697959 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14697915 CGGTGCCAAG
*
14697925 AACTTGACCTCCTATA
1 AACTTGACCGCCTATA
14697941 AACTTGACCGCCTATA
1 AACTTGACCGCCTATA
14697957 AAC
1 AAC
14697960 ATGTTATCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.26
Consensus pattern (16 bp):
AACTTGACCGCCTATA
Found at i:14713912 original size:24 final size:24
Alignment explanation
Indices: 14713817--14713912 Score: 104
Period size: 24 Copynumber: 4.0 Consensus size: 24
14713807 TTGTCTGCGA
* * *
14713817 TATTGAATGGCTTGGCCA-ATACAT
1 TATTGAGTGGCTTGGACATA-ACGT
* * * *
14713841 TATTGAGTGGCTTGAACACAATGC
1 TATTGAGTGGCTTGGACATAACGT
*
14713865 TATTGAGTGGCTTGGGCATAACGT
1 TATTGAGTGGCTTGGACATAACGT
14713889 TATTGAGTGGCTTGGACATAACGT
1 TATTGAGTGGCTTGGACATAACGT
14713913 GCAACTTGCC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
24 58 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (24 bp):
TATTGAGTGGCTTGGACATAACGT
Found at i:14737363 original size:15 final size:12
Alignment explanation
Indices: 14737331--14737355 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14737321 TAATTATACT
14737331 AACATACGACAA
1 AACATACGACAA
14737343 AACATACGACAA
1 AACATACGACAA
14737355 A
1 A
14737356 CAAACATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.24, G:0.08, T:0.08
Consensus pattern (12 bp):
AACATACGACAA
Found at i:14737447 original size:20 final size:22
Alignment explanation
Indices: 14737422--14737474 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
14737412 ATCTTACGTA
14737422 GGTATCGATACTGCCTCT-A-T
1 GGTATCGATACTGCCTCTAAGT
* * *
14737442 GGTATCGATATTTCCTTTAAGT
1 GGTATCGATACTGCCTCTAAGT
14737464 GGTATCGATAC
1 GGTATCGATAC
14737475 CACCTGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 15 0.56
21 1 0.04
22 11 0.41
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.38
Consensus pattern (22 bp):
GGTATCGATACTGCCTCTAAGT
Found at i:14751553 original size:20 final size:20
Alignment explanation
Indices: 14751528--14751575 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
14751518 AGGCTTATGC
14751528 TAAGTAAATGAAATGAAAAG
1 TAAGTAAATGAAATGAAAAG
* * *
14751548 TAAGTAAACGGAATGATAAG
1 TAAGTAAATGAAATGAAAAG
14751568 TAAG-AAAT
1 TAAGTAAAT
14751576 AGAGTGGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.56, C:0.02, G:0.21, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGAAATGAAAAG
Found at i:14753065 original size:20 final size:20
Alignment explanation
Indices: 14753040--14753084 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
14753030 TAAATACACA
14753040 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
14753060 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
14753080 TAATT
1 TAATT
14753085 CGGTTGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:14757070 original size:19 final size:19
Alignment explanation
Indices: 14757041--14757078 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
14757031 AAGATGAAGA
14757041 ATCAAATTTAACTAAAAAAT
1 ATCAAATTTAA-TAAAAAAT
14757061 ATCAAA-TTAATAAAAAAT
1 ATCAAATTTAATAAAAAAT
14757079 TGTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
ATCAAATTTAATAAAAAAT
Found at i:14772554 original size:15 final size:15
Alignment explanation
Indices: 14772534--14772563 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14772524 ATATATCCTA
14772534 AACCAAATTTGCACC
1 AACCAAATTTGCACC
14772549 AACCAAATTTGCACC
1 AACCAAATTTGCACC
14772564 CTTGTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.33, G:0.07, T:0.20
Consensus pattern (15 bp):
AACCAAATTTGCACC
Found at i:14773402 original size:12 final size:13
Alignment explanation
Indices: 14773380--14773408 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14773370 ATGATTCTAT
14773380 TTTTCCATTTTCA
1 TTTTCCATTTTCA
14773393 TTTT-CATTTTCA
1 TTTTCCATTTTCA
14773405 TTTT
1 TTTT
14773409 GGAGAAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCCATTTTCA
Found at i:14773438 original size:57 final size:60
Alignment explanation
Indices: 14773327--14773456 Score: 142
Period size: 63 Copynumber: 2.1 Consensus size: 60
14773317 CATTTCCAAG
* * *
14773327 TCATTTTCATTTTCATTTTAGAGAAAATCACATTCATTTCCAAATGATTCTATTTTTCCATTT-
1 TCATTTTCATTTTCATTTTAGAGAAAACCACAATCATTTCCAAA-GA-T-TA-TTTCCCATTTC
* *
14773390 TCATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCC-AA-A-TATTTCCCATTTC
1 TCATTTTCATTTTCATTTTAGAGAAAACCACAATCATTTCCAAAGATTATTTCCCATTTC
14773447 TCTATTTTCA
1 TC-ATTTTCA
14773457 CAATTTCTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
56 9 0.15
57 4 0.07
58 7 0.12
60 1 0.02
62 2 0.03
63 37 0.62
ACGTcount: A:0.28, C:0.19, G:0.05, T:0.48
Consensus pattern (60 bp):
TCATTTTCATTTTCATTTTAGAGAAAACCACAATCATTTCCAAAGATTATTTCCCATTTC
Found at i:14774958 original size:27 final size:27
Alignment explanation
Indices: 14774920--14775095 Score: 191
Period size: 27 Copynumber: 6.5 Consensus size: 27
14774910 TCGATATTTG
14774920 GATCGAAATACCCTCGAATGGTAAAAT
1 GATCGAAATACCCTCGAATGGTAAAAT
*
14774947 GATCGAAATACCCTCGAAGGGTAAAAT
1 GATCGAAATACCCTCGAATGGTAAAAT
* *
14774974 GACCGAAATACCCTC-TATGGGTAAAAT
1 GATCGAAATACCCTCGAAT-GGTAAAAT
*
14775001 GACCGAAATACCCTCG-ATAGGTAAAAT
1 GATCGAAATACCCTCGAAT-GGTAAAAT
* * *
14775028 GATCGAAATGCCC-CCATAGGGTAAAAT
1 GATCGAAATACCCTCGA-ATGGTAAAAT
* *
14775055 GACCGAAATACCCTCGTAA-GGTAGAAT
1 GATCGAAATACCCTCG-AATGGTAAAAT
14775082 -ATCGAAATAGCCCT
1 GATCGAAATA-CCCT
14775096 ATAGGGTAAA
Statistics
Matches: 128, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.08
27 114 0.89
28 3 0.02
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
GATCGAAATACCCTCGAATGGTAAAAT
Found at i:14775117 original size:27 final size:27
Alignment explanation
Indices: 14774939--14775513 Score: 468
Period size: 27 Copynumber: 21.4 Consensus size: 27
14774929 ACCCTCGAAT
* * *
14774939 GGTAAAATGATCGAAATA-CCCTCGAAG
1 GGTAAAATGACCGTAATAGCCCT-GTAG
* *
14774966 GGTAAAATGACCGAAATA-CCCTCTATG
1 GGTAAAATGACCGTAATAGCCCTGTA-G
*
14774993 GGTAAAATGACCGAAATA-CCCTCGATA-
1 GGTAAAATGACCGTAATAGCCCT-G-TAG
* * **
14775020 GGTAAAATGATCGAAAT-GCCCCCATAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
* *
14775047 GGTAAAATGACCGAAATA-CCCTCGTAA
1 GGTAAAATGACCGTAATAGCCCT-GTAG
* * * *
14775074 GGTAGAAT-ATCGAAATAGCCCTATAG
1 GGTAAAATGACCGTAATAGCCCTGTAG
* * *
14775100 GGTAAAATAACCTTAATACCCCTGTAG
1 GGTAAAATGACCGTAATAGCCCTGTAG
**
14775127 GGTAAAATGATTGTAAT-GCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCC-TGTAG
*
14775154 GGTAAAATGACCGTAATA-CCTCTATAG
1 GGTAAAATGACCGTAATAGCC-CTGTAG
*
14775181 GGTAAAATGACCATAATA-CTCCTGTAG
1 GGTAAAATGACCGTAATAGC-CCTGTAG
* * * * *
14775208 GATAAAATGACCATAATACCCCTATAA
1 GGTAAAATGACCGTAATAGCCCTGTAG
*
14775235 GGTAAAATGACTGTAAT-GCCCCTGTAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
*
14775262 GGTAAAATGATCGTAAT-GCCCCTGTAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
*
14775289 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATAGCCCTGTAG
* * *
14775316 AGTAAAATGACCCTAATACCCCTGTAG
1 GGTAAAATGACCGTAATAGCCCTGTAG
* **
14775343 GATAAAATGGTCGTAAT-GCCCCTGTAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
*
14775370 GGTAAAATGATCGTAAT-GCCCCTGTAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
14775397 GGTAAAATGACCGTAAT-GCCCCTGTAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
* * *
14775424 AGTAAAATGACCCTAATACCCCTGTAG
1 GGTAAAATGACCGTAATAGCCCTGTAG
* **
14775451 GATAAAATGGTCGTAAT-GCCCCTGTAG
1 GGTAAAATGACCGTAATAG-CCCTGTAG
*
14775478 GGTAAAATGACTGTAAT-GCCCTGGT-G
1 GGTAAAATGACCGTAATAGCCCT-GTAG
14775504 GGT-AAATGAC
1 GGTAAAATGAC
14775514 TATTTTTGCC
Statistics
Matches: 459, Mismatches: 68, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
25 7 0.02
26 34 0.07
27 410 0.89
28 6 0.01
29 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATAGCCCTGTAG
Found at i:14775693 original size:27 final size:26
Alignment explanation
Indices: 14775632--14775694 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
14775622 ATGGAGGAAG
*
14775632 TACTA-TACTAGTGGCTTTGCCACAA
1 TACTATTACTAGTGGCTTGGCCACAA
*
14775657 TCACTGTTACTAGTGGCTTGGCCACATA
1 T-ACTATTACTAGTGGCTTGGCCACA-A
14775685 TACTATTACT
1 TACTATTACT
14775695 GGCAGCATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.03
26 3 0.09
27 26 0.81
28 2 0.06
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (26 bp):
TACTATTACTAGTGGCTTGGCCACAA
Found at i:14775786 original size:32 final size:32
Alignment explanation
Indices: 14775740--14776006 Score: 215
Period size: 32 Copynumber: 8.4 Consensus size: 32
14775730 GCTGCGATGC
*
14775740 TACTAATGGCTTTGTGCCGATCATAGTACTGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
14775772 TACTGATGGCTTTGTGCCGGTCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* * * *
14775804 TAGTGATGGCTTTGTGCCGATGATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* * *
14775836 TACCGATGGCTGTGTGCCGATCAT-TTCACTGT
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* * *
14775868 TATTGATGG-TTGTGTGCTGATCATA-TCACTGC
1 TACTGATGGCTT-TGTGCCGATCATAGT-ACTGT
* **
14775900 TACTGATGGCTTTGTGTCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
* *
14775932 TACTGATAG-TTGTGTGCCGATCATA-TCACTGC
1 TACTGATGGCTT-TGTGCCGATCATAGT-ACTGT
* * * * *
14775964 TGCGGATGGCTTTGTGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
*
14775995 TACTTATGGCTT
1 TACTGATGGCTT
14776007 GTAGCCATTC
Statistics
Matches: 188, Mismatches: 36, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
31 15 0.08
32 167 0.89
33 6 0.03
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATAGTACTGT
Found at i:14775819 original size:64 final size:63
Alignment explanation
Indices: 14775752--14775986 Score: 240
Period size: 64 Copynumber: 3.7 Consensus size: 63
14775742 CTAATGGCTT
* * *
14775752 TGTGCCGATCATAGT-ACTGTTACTGATGGCTTTGTGCCGGTCATAGTACCGTTAGTGATGGCTT
1 TGTGCCGATCATA-TCACTGCTACTGATGGCTTTGTGCCGATCAT-GTACCGTTACTGATGG-TT
14775816 -
63 G
* * * * * * * * *
14775816 TGTGCCGATGATATTACCGTTACCGATGGCTGTGTGCCGATCATTTCACTGTTATTGATGGTTG
1 TGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCGATCATGT-ACCGTTACTGATGGTTG
* * * *
14775880 TGTGCTGATCATATCACTGCTACTGATGGCTTTGTGTCGATCATGTTACCATTACTGATAGTTG
1 TGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCGATCATG-TACCGTTACTGATGGTTG
* * *
14775944 TGTGCCGATCATATCACTGCTGCGGATGGCTTTGTGCCAATCA
1 TGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCGATCA
14775987 CATTACTGTA
Statistics
Matches: 141, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
63 4 0.03
64 136 0.96
65 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (63 bp):
TGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCGATCATGTACCGTTACTGATGGTTG
Found at i:14775909 original size:96 final size:96
Alignment explanation
Indices: 14775745--14775986 Score: 265
Period size: 96 Copynumber: 2.5 Consensus size: 96
14775735 GATGCTACTA
* * * *
14775745 ATGGCTTTGTGCCGATCATAGT-ACTGTTACTGATGGCTTTGTGCCGGTCATAGTACCGTTAGTG
1 ATGGCTGTGTGCCGATCATA-TCACTGTTACTGATGGCTTTGTGCCGATCATAGTACCGCTACTG
* *
14775809 ATGGCTTTGTGCCGATGATATTACCGTTACCG
65 ATGGCTTTGTGCCGATCATATTACCATTACCG
* * * *
14775841 ATGGCTGTGTGCCGATCATTTCACTGTTATTGATGG-TTGTGTGCTGATCATA-TCACTGCTACT
1 ATGGCTGTGTGCCGATCATATCACTGTTACTGATGGCTT-TGTGCCGATCATAGT-ACCGCTACT
* * *
14775904 GATGGCTTTGTGTCGATCATGTTACCATTACTG
64 GATGGCTTTGTGCCGATCATATTACCATTACCG
* * * * * *
14775937 ATAGTTGTGTGCCGATCATATCACTGCTGCGGATGGCTTTGTGCCAATCA
1 ATGGCTGTGTGCCGATCATATCACTGTTACTGATGGCTTTGTGCCGATCA
14775987 CATTACTGTA
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
95 4 0.03
96 114 0.95
97 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (96 bp):
ATGGCTGTGTGCCGATCATATCACTGTTACTGATGGCTTTGTGCCGATCATAGTACCGCTACTGA
TGGCTTTGTGCCGATCATATTACCATTACCG
Found at i:14776023 original size:22 final size:21
Alignment explanation
Indices: 14775998--14776062 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
14775988 ATTACTGTAC
14775998 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* *
14776020 TTATAGCTTATAGCTATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
*
14776042 TTACGGCTCTTAGCCATTCTG
1 TTATGGCT-TTAGCCATTCTG
14776063 ACTACAGGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
22 35 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:14784519 original size:46 final size:46
Alignment explanation
Indices: 14784452--14784808 Score: 475
Period size: 46 Copynumber: 8.2 Consensus size: 46
14784442 GCCGGTTGGG
*
14784452 TTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCAC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
* *
14784498 TTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCAG
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
*
14784544 TTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCAC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
* *
14784590 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTACCACTTTGTCTC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
*
14784636 TTGATCATATAA--GT-G-T--AG-T---ACTTATCACTTTGTCAC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
*
14784672 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
14784718 TTGATCAGATAA--GT-G-T--AG----CACTTATCACTTTGTCAC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
* * *
14784754 TTGATCAGATAAGTATAGCTAAAGCTACCACTTATCACTTTATCTC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
14784800 TTGATCAGA
1 TTGATCAGA
14784809 AGTACTCAAA
Statistics
Matches: 275, Mismatches: 16, Indels: 40
0.83 0.05 0.12
Matches are distributed among these distances:
36 55 0.20
38 3 0.01
39 3 0.01
40 6 0.02
42 6 0.02
43 3 0.01
44 4 0.01
46 195 0.71
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (46 bp):
TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
Found at i:14784659 original size:36 final size:36
Alignment explanation
Indices: 14784619--14784767 Score: 163
Period size: 36 Copynumber: 3.9 Consensus size: 36
14784609 TAAAGCTACC
* * *
14784619 ACTTACCACTTTGTCTCTTGATCATATAAGTGTAGT
1 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGT
14784655 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG-T
* *
14784698 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 ---ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGT
14784737 ACTTATCACTTTGTCACTTGATCAGATAAGT
1 ACTTATCACTTTGTCACTTGATCAGATAAGT
14784768 ATAGCTAAAG
Statistics
Matches: 97, Mismatches: 6, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
36 56 0.58
38 2 0.02
39 1 0.01
40 3 0.03
42 3 0.03
43 2 0.02
44 2 0.02
46 28 0.29
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (36 bp):
ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGT
Found at i:14784711 original size:82 final size:82
Alignment explanation
Indices: 14784572--14784808 Score: 429
Period size: 82 Copynumber: 2.9 Consensus size: 82
14784562 CTAAAGCTAA
*
14784572 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTACCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
*
14784637 TGATCATATAAGTGTAG
66 TGATCAGATAAGTGTAG
*
14784654 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
14784719 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
* *
14784736 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
14784801 TGATCAGA
66 TGATCAGA
14784809 AGTACTCAAA
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 149 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
TGATCAGATAAGTGTAG
Found at i:14784787 original size:128 final size:132
Alignment explanation
Indices: 14784452--14784808 Score: 427
Period size: 128 Copynumber: 2.7 Consensus size: 132
14784442 GCCGGTTGGG
14784452 TTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 TTGATCAGATAAG-GTAGCTAA-G---CCACTTATCACTTTGTCACTTGATCAGATAAGT-TAGC
* *
14784517 TAAGGCTACCACTTATCACTTTGTCAGTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCAC
60 TAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCAC
14784582 TTTGTCAC
125 TTTGTCAC
* * *
14784590 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTACCACTTTGTCTCTTGATCATATAAG-T-G-T
1 TTGATCAGATAAG-GTAGCT-AAG---CCACTTATCACTTTGTCACTTGATCAGATAAGTTAGCT
*
14784652 --AG-T---ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACT
61 AAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACT
*
14784711 TTGTCTC
126 TTGTCAC
14784718 TTGATCAGATAA-GT-G-T-AG-CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAAG
1 TTGATCAGATAAGGTAGCTAAGCCACTTATCACTTTGTCACTTGATCAGATAAGT-TAGCTAAAG
* *
14784778 CTACCACTTATCACTTTATCTCTTGATCAGA
65 CTACCACTTATCACTTTGTCACTTGATCAGA
14784809 AGTACTCAAA
Statistics
Matches: 196, Mismatches: 12, Indels: 32
0.82 0.05 0.13
Matches are distributed among these distances:
118 28 0.14
120 1 0.01
121 1 0.01
122 3 0.02
124 3 0.02
125 2 0.01
126 2 0.01
128 96 0.49
131 1 0.01
132 1 0.01
134 1 0.01
135 1 0.01
136 1 0.01
138 53 0.27
139 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (132 bp):
TTGATCAGATAAGGTAGCTAAGCCACTTATCACTTTGTCACTTGATCAGATAAGTTAGCTAAAGC
TACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTC
AC
Found at i:14791090 original size:11 final size:11
Alignment explanation
Indices: 14791071--14791101 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14791061 CTTAAAAAAT
14791071 ATAAATAATTA
1 ATAAATAATTA
*
14791082 ATAATTAATTA
1 ATAAATAATTA
14791093 ATAAATAAT
1 ATAAATAAT
14791102 GAAAATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATAAATAATTA
Found at i:14798860 original size:27 final size:27
Alignment explanation
Indices: 14798830--14798898 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
14798820 GGAGTCCGTC
* * *
14798830 AGGACACTAAACACGGGGTAGTCCATT
1 AGGACATTAAACACAGGGTAGTCCACT
*
14798857 AGGACATTAAACACAGGGTAGTTCACT
1 AGGACATTAAACACAGGGTAGTCCACT
14798884 AGGACATTAAACACA
1 AGGACATTAAACACA
14798899 AGTCGATTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (27 bp):
AGGACATTAAACACAGGGTAGTCCACT
Found at i:14805993 original size:22 final size:22
Alignment explanation
Indices: 14805968--14806009 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14805958 TACAAAGTTG
14805968 ATAAT-AAT-TAA-TATATATT
1 ATAATAAATATAATTATATATT
14805987 ATAATAAATATAATTATATATT
1 ATAATAAATATAATTATATATT
14806009 A
1 A
14806010 GTTATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 3 0.15
22 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAATAAATATAATTATATATT
Found at i:14805996 original size:16 final size:15
Alignment explanation
Indices: 14805971--14806004 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
14805961 AAAGTTGATA
*
14805971 ATAATTAATATATATT
1 ATAATAAATATA-ATT
14805987 ATAATAAATATAATT
1 ATAATAAATATAATT
14806002 ATA
1 ATA
14806005 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:14821233 original size:104 final size:104
Alignment explanation
Indices: 14821053--14821276 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
14821043 TGTATATAAA
** * *
14821053 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
14821118 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
14821157 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
14821221 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
14821261 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
14821277 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:14821328 original size:71 final size:72
Alignment explanation
Indices: 14821195--14821346 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
14821185 TCATTGGTGG
* *
14821195 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
14821260 GAGGGGT
66 GAGGGGT
***
14821267 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
14821331 GAGGGGT
66 GAGGGGT
14821338 TGCTAAGTG
1 TGCTAAGTG
14821347 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:14828785 original size:104 final size:104
Alignment explanation
Indices: 14828605--14828827 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
14828595 TTGTATATAA
** * *
14828605 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
14828670 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
14828709 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
14828773 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
14828813 A-GGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
14828828 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 14 0.12
104 97 0.87
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:14828879 original size:70 final size:72
Alignment explanation
Indices: 14828747--14828897 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
14828737 TCATTGGTGG
* *
14828747 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
14828812 GA-GGGT
66 GAGGGGT
***
14828818 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
14828882 GAGGGGT
66 GAGGGGT
14828889 TGCTAAGTG
1 TGCTAAGTG
14828898 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 31 0.42
71 43 0.58
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:14852439 original size:19 final size:19
Alignment explanation
Indices: 14852415--14852452 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14852405 CCAACTATTA
14852415 TTTCTATTCTTTTCATTTC
1 TTTCTATTCTTTTCATTTC
*
14852434 TTTCTATTCTTTTTATTTC
1 TTTCTATTCTTTTCATTTC
14852453 CATTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTCTATTCTTTTCATTTC
Found at i:14852774 original size:25 final size:25
Alignment explanation
Indices: 14852746--14852793 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14852736 GGAAACCATA
14852746 ATTTTTAGGAATTTTGTACTCCTGT
1 ATTTTTAGGAATTTTGTACTCCTGT
*
14852771 ATTTTTAGGAATTTTGTATTCCT
1 ATTTTTAGGAATTTTGTACTCCT
14852794 ATCTTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (25 bp):
ATTTTTAGGAATTTTGTACTCCTGT
Found at i:14857458 original size:12 final size:12
Alignment explanation
Indices: 14857441--14857468 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14857431 CCACATACAT
14857441 CTCTCCCTTTTA
1 CTCTCCCTTTTA
14857453 CTCTCCCTTTTA
1 CTCTCCCTTTTA
14857465 CTCT
1 CTCT
14857469 AAAGAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.43, G:0.00, T:0.50
Consensus pattern (12 bp):
CTCTCCCTTTTA
Found at i:14863515 original size:16 final size:17
Alignment explanation
Indices: 14863494--14863526 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
14863484 CTAACATTGG
14863494 TTTTTTTTTGTT-TTTT
1 TTTTTTTTTGTTCTTTT
14863510 TTTTTTTTTGTTCTTTT
1 TTTTTTTTTGTTCTTTT
14863527 ATGGTGTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.91
Consensus pattern (17 bp):
TTTTTTTTTGTTCTTTT
Found at i:14865800 original size:16 final size:15
Alignment explanation
Indices: 14865779--14865830 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
14865769 TTTGGTTTGC
14865779 TGTATTAGATTAGAGG
1 TGTATT-GATTAGAGG
*
14865795 TGTATTGAATTAGTGG
1 TGTATTG-ATTAGAGG
* *
14865811 TGTAATGGAATAGAGG
1 TGT-ATTGATTAGAGG
14865827 TGTA
1 TGTA
14865831 ATGGAATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 2 0.07
16 25 0.83
17 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.37
Consensus pattern (15 bp):
TGTATTGATTAGAGG
Found at i:14865831 original size:16 final size:16
Alignment explanation
Indices: 14865789--14865848 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
14865779 TGTATTAGAT
*
14865789 TAGAGGTGT-ATTGAA
1 TAGAGGTGTAATGGAA
*
14865804 TTAGTGGTGTAATGGAA
1 -TAGAGGTGTAATGGAA
14865821 TAGAGGTGTAATGGAA
1 TAGAGGTGTAATGGAA
*
14865837 TAGATGTGTAAT
1 TAGAGGTGTAAT
14865849 AGCAAATCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
16 34 0.87
17 5 0.13
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (16 bp):
TAGAGGTGTAATGGAA
Found at i:14866103 original size:18 final size:17
Alignment explanation
Indices: 14866082--14866116 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14866072 TTATTATTAA
*
14866082 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14866100 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14866117 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14866163 original size:61 final size:61
Alignment explanation
Indices: 14866097--14866287 Score: 205
Period size: 61 Copynumber: 3.2 Consensus size: 61
14866087 TTTTAATTAA
14866097 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
14866158 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
14866217 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
14866278 AATATATAAT
1 AATATATAAT
14866288 ACTATAAAAG
Statistics
Matches: 99, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
58 3 0.03
59 30 0.30
60 23 0.23
61 40 0.40
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:14866230 original size:14 final size:15
Alignment explanation
Indices: 14866181--14866232 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14866171 ATAAAATATA
14866181 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14866196 TATTAAATATATTAT
1 AATTAAATATATTAT
14866211 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14866224 AATTTAATA
1 AATTAAATA
14866233 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14866278 original size:120 final size:121
Alignment explanation
Indices: 14866065--14866357 Score: 509
Period size: 120 Copynumber: 2.4 Consensus size: 121
14866055 ATCATATTTA
14866065 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
14866130 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAGATAAATTG
* *
14866185 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
14866250 TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAGATAAATTG
* *
14866306 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
14866358 TAAAATAATT
Statistics
Matches: 164, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
120 162 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAGATAAATTG
Found at i:14866427 original size:26 final size:28
Alignment explanation
Indices: 14866398--14866458 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
14866388 TATTAATTTG
*
14866398 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
14866424 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
14866452 TAAAATT
1 TATAATT
14866459 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:14866456 original size:47 final size:46
Alignment explanation
Indices: 14866405--14866548 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
14866395 TTGTATAATT
14866405 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
14866452 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
14866496 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
14866543 TAAAAT
1 TAAAAT
14866549 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:14866468 original size:91 final size:90
Alignment explanation
Indices: 14866373--14866580 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 90
14866363 TAATTATAAC
* * * * *
14866373 TAATAAATTATCTTATATTAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
14866438 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
14866464 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
14866529 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
14866555 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
14866581 CTAAAATCAA
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
91 86 0.80
92 21 0.20
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:14866540 original size:44 final size:43
Alignment explanation
Indices: 14866398--14866540 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
14866388 TATTAATTTG
* *
14866398 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
14866442 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
14866489 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
14866533 TATAATTT
1 TATAATTT
14866541 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:14866555 original size:47 final size:47
Alignment explanation
Indices: 14866423--14866561 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
14866413 TTATTATTAC
* *
14866423 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
14866470 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
14866514 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
14866561 A
1 A
14866562 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:14866612 original size:221 final size:216
Alignment explanation
Indices: 14866049--14866613 Score: 479
Period size: 221 Copynumber: 2.6 Consensus size: 216
14866039 AATAATAAAT
* * * * *
14866049 AATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAA
1 AATTTACTCAAATTTAAACATAATTAATATTAAATATAATTTAA-TAATATATATAATTT-ATAA
* * * * *
14866114 AATTCTTAATAAT-CAATATTCTTATATGAATTTACTCAAATCATAATAT-A-TGATACTATA--
64 AATTCTTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAAAATATAATTGATATTATATT
*
14866174 AAATATAAATTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTC
129 AAATATAAATTAAAATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTC
*
14866239 TTAATAATTAATATTCTTATATG
194 TTAATAATAAATATTCTTATATG
* * * * * *
14866262 AATTTACTCAAATCATAATATATAA-TACTATAAAAGATAATTTGA-AATA-AT-TAATATTA-A
1 AATTTACTCAAAT-TTAA-ACATAATTAATATTAAATATAATTTAATAATATATATAAT-TTATA
* * * * *
14866322 ATATATT-TTAATTAA-AATATATGAT-TTA-ATAAAATTTA-AAATAATTATAACTAATAAATT
63 A-A-ATTCTTAA-TAATAA-A-ATGTTCTTATAT-GAATTTACTAA-AATCA-AAAT-AT-AATT
* * * *
14866382 -ATCTTATATTAATTTGTATAATTTAAAATAATTATTATTACATATAATT-TAA-TAATAATATA
118 GATATTATATTAA---ATATAAATTAAAATAATTATTATTAAATAT-ATTATAATTAA-AATATA
* * *
14866444 TAATTTCATAAAATTCTTGATAATAAATTTTCTTATATG
178 TAATTTAATAAAATTCTTAATAATAAATATTCTTATATG
14866483 AATTTA-T-ACAATTTAAA-ATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATA
1 AATTTACTCA-AATTTAAACATAATTAATATTAAATATAATTTAATAAT-ATATATAATTT-ATA
*
14866545 AAATTCTTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAAAATATAACTTGAGAATTAT
63 AAATTCTTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAAAATATAA-TTGA-TATTAT
14866610 ATTA
126 ATTA
14866614 TGCATAAACA
Statistics
Matches: 272, Mismatches: 41, Indels: 70
0.71 0.11 0.18
Matches are distributed among these distances:
209 2 0.01
210 10 0.04
211 13 0.05
212 17 0.06
213 16 0.06
214 20 0.07
215 5 0.02
216 7 0.03
217 5 0.02
218 21 0.08
219 11 0.04
220 16 0.06
221 108 0.40
222 19 0.07
223 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (216 bp):
AATTTACTCAAATTTAAACATAATTAATATTAAATATAATTTAATAATATATATAATTTATAAAA
TTCTTAATAATAAAATGTTCTTATATGAATTTACTAAAATCAAAATATAATTGATATTATATTAA
ATATAAATTAAAATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTT
AATAATAAATATTCTTATATG
Found at i:14875642 original size:33 final size:33
Alignment explanation
Indices: 14875605--14875671 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
14875595 TAGATCACAT
14875605 TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
1 TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
* *
14875638 TGTTTCTCTCTATTTCACTCTGATTTTACAAAA
1 TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
14875671 T
1 T
14875672 CACTGTTACG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.46
Consensus pattern (33 bp):
TGTTTCTCCCTATTCCACTCTGATTTTACAAAA
Found at i:14884654 original size:27 final size:27
Alignment explanation
Indices: 14884624--14884676 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
14884614 TCCTTTTAAC
14884624 TTAATTACGATATATTTGCCACATAAT
1 TTAATTACGATATATTTGCCACATAAT
* * * *
14884651 TTAATTATGGTATATTTTCCATATAA
1 TTAATTACGATATATTTGCCACATAA
14884677 ACCATTGTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (27 bp):
TTAATTACGATATATTTGCCACATAAT
Found at i:14896896 original size:9 final size:9
Alignment explanation
Indices: 14896884--14896919 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
14896874 AATTTTAAAT
14896884 ATTTAATCA
1 ATTTAATCA
14896893 ATTTAATCA
1 ATTTAATCA
14896902 ATTTAATC-
1 ATTTAATCA
*
14896910 ATTTACTCA
1 ATTTAATCA
14896919 A
1 A
14896920 AAACTAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTTAATCA
Found at i:14896905 original size:18 final size:17
Alignment explanation
Indices: 14896884--14896919 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14896874 AATTTTAAAT
14896884 ATTTAATCAATTTAATCA
1 ATTTAATC-ATTTAATCA
*
14896902 ATTTAATCATTTACTCA
1 ATTTAATCATTTAATCA
14896919 A
1 A
14896920 AAACTAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTTAATCATTTAATCA
Found at i:14897794 original size:43 final size:43
Alignment explanation
Indices: 14897664--14897865 Score: 219
Period size: 43 Copynumber: 4.7 Consensus size: 43
14897654 ATATTTTGGT
* * *
14897664 ATATTCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCAAA
1 ATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAG
* * * * *
14897707 ATATCTGATGATGCA-T-TGTGTGCTAATATAGTTACTTTGGG
1 ATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAG
* * *
14897748 ATATCCGATGATGCACTATTTGTGCCAGTATAGTTGCTTCGAG
1 ATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAG
* ** * * * * *
14897791 ATATCTGATTTTGCATTGTGTGTACCAGTATAATTGCTTCGAT
1 ATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAG
14897834 ATATCCGATGATGCACTGTGTGTGCCAGTATA
1 ATATCCGATGATGCACTGTGTGTGCCAGTATA
14897866 CATGATTTGG
Statistics
Matches: 128, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
41 33 0.26
42 2 0.02
43 93 0.73
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (43 bp):
ATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGAG
Found at i:14897799 original size:84 final size:85
Alignment explanation
Indices: 14897658--14897865 Score: 267
Period size: 84 Copynumber: 2.4 Consensus size: 85
14897648 CATGTTATAT
*
14897658 TTTGGTATATTCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCAAAATATCTGATGATGCAT
1 TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCAAAATATCTGATGATGCAT
*
14897723 TGTGTGCTA-A-TATAGTTAC
66 TGTGTG-TACAGTATAATTAC
* * * * * * **
14897742 TTTGGGATATCCGATGATGCACTATTTGTGCCAGTATAGTTGCTTCGAGATATCTGATTTTGCAT
1 TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCAAAATATCTGATGATGCAT
*
14897807 TGTGTGTACCAGTATAATTGC
66 TGTGTGTA-CAGTATAATTAC
* *
14897828 TTCGATATATCCGATGATGCACTGTGTGTGCCAGTATA
1 TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATA
14897866 CATGATTTGG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
83 2 0.02
84 62 0.59
85 1 0.01
86 40 0.38
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (85 bp):
TTTGGTATATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCAAAATATCTGATGATGCAT
TGTGTGTACAGTATAATTAC
Found at i:14903128 original size:18 final size:18
Alignment explanation
Indices: 14903105--14903149 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
14903095 CTTAATGGAT
*
14903105 TTACAAGATCATCTAAGA
1 TTACAAAATCATCTAAGA
* *
14903123 TTACAAAATCTTCTAATA
1 TTACAAAATCATCTAAGA
14903141 TTACAAAAT
1 TTACAAAAT
14903150 ATTCACCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (18 bp):
TTACAAAATCATCTAAGA
Found at i:14904233 original size:25 final size:25
Alignment explanation
Indices: 14904170--14904233 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
14904160 GATTTAACCG
* * *
14904170 ATTCATTCTATTATGTCATTTATTG
1 ATTCAATCTATTATGTCATTGATTA
*
14904195 ATTTAATC-ATTTATGGTC-TTGATTA
1 ATTCAATCTA-TTAT-GTCATTGATTA
14904220 ATTCAATCTATTAT
1 ATTCAATCTATTAT
14904234 TGTTTATAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 1 0.03
25 26 0.84
26 4 0.13
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (25 bp):
ATTCAATCTATTATGTCATTGATTA
Found at i:14907696 original size:13 final size:13
Alignment explanation
Indices: 14907645--14907709 Score: 87
Period size: 13 Copynumber: 5.1 Consensus size: 13
14907635 AGTTCTTCAT
14907645 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
14907658 TG-TTTTGAAAAG
1 TGCTTTTGAAAAG
* *
14907670 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
14907683 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
14907696 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
14907709 T
1 T
14907710 TTGGTTTAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
12 12 0.27
13 32 0.73
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:14909168 original size:13 final size:13
Alignment explanation
Indices: 14909150--14909200 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
14909140 AGTTATTCAT
14909150 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
14909163 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
14909176 TGCTTTTCAGAGG
1 TGCTTTTGAGAAG
14909189 TGCTTTTGAGAA
1 TGCTTTTGAGAA
14909201 ATTTGAGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:14912218 original size:14 final size:13
Alignment explanation
Indices: 14912194--14912246 Score: 56
Period size: 14 Copynumber: 4.0 Consensus size: 13
14912184 AATGAAAATA
*
14912194 TTTTTAATTTAAT
1 TTTTTATTTTAAT
14912207 TTATTTATTTTAAT
1 TT-TTTATTTTAAT
14912221 TTTTTAATTTT-AT
1 TTTTT-ATTTTAAT
14912234 CTTTTT-TTTTAAT
1 -TTTTTATTTTAAT
14912247 ATGTTACTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
12 4 0.11
13 9 0.26
14 22 0.63
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTATTTTAAT
Found at i:14912230 original size:27 final size:26
Alignment explanation
Indices: 14912194--14912246 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
14912184 AATGAAAATA
14912194 TTTTTAATTTAAT-TTATTTATTTTAAT
1 TTTTTAATTTAATCTT-TTT-TTTTAAT
*
14912221 TTTTTAATTTTATCTTTTTTTTTAAT
1 TTTTTAATTTAATCTTTTTTTTTAAT
14912247 ATGTTACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 15 0.62
28 2 0.08
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (26 bp):
TTTTTAATTTAATCTTTTTTTTTAAT
Found at i:14916929 original size:22 final size:21
Alignment explanation
Indices: 14916894--14916964 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 21
14916884 AAAGGGTATC
* *
14916894 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
14916915 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
14916938 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
14916957 TGCAAATC
1 TACAAATC
14916965 CTTGAAGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 15 0.35
21 3 0.07
22 15 0.35
23 10 0.23
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:14916937 original size:23 final size:22
Alignment explanation
Indices: 14916894--14916951 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14916884 AAAGGGTATC
* *
14916894 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14916915 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14916938 TGCATATCATATCT
1 TACAAATCATATCT
14916952 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14917583 original size:88 final size:88
Alignment explanation
Indices: 14917480--14917769 Score: 204
Period size: 88 Copynumber: 3.3 Consensus size: 88
14917470 TTTCAACCTA
* *
14917480 CTCCACTGCTACTTAGGGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGGAAGA
14917545 TAGGATTCGCCATCTTCGATCTG
66 TAGGATTCGCCATCTTCGATCTG
* ** * * * * * *
14917568 CTCCACTACTGCTTAGAGAGATAAGATCT-GTAATTTTCAA-C--CTACTCTATTGCTGCTCAGG
1 CTCCACTACTGCTTAGGGAGATAAGA-CTAGT-GGTTTAAATCTTCTTCCCTACTAC--CT-TGG
* * * * *
14917629 G-AGATAAGG-TCTACAACAATCTTCAACCTA
61 GAAGAT-AGGAT-T-C-GCCATCTTCGATCTG
* * * * *
14917659 CTCCACTGCTGCTCAGGGAGATAAGCCTAGTGGCTTAAATCTGT-TTCCCTACTACCTTGAGAAG
1 CTCCACTACTGCTTAGGGAGATAAGACTAGTGGTTTAAATCT-TCTTCCCTACTACCTTGGGAAG
* * *
14917723 ATAAGATTCGCCGTCTTCGATTTG
65 ATAGGATTCGCCATCTTCGATCTG
14917747 CT-C-C-ACTGCTTAGGGAGATAAGA
1 CTCCACTACTGCTTAGGGAGATAAGA
14917770 TCTGTAATTT
Statistics
Matches: 145, Mismatches: 41, Indels: 35
0.66 0.19 0.16
Matches are distributed among these distances:
85 16 0.11
86 9 0.06
87 1 0.01
88 43 0.30
89 15 0.10
90 12 0.08
91 42 0.29
93 7 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGGAAGA
TAGGATTCGCCATCTTCGATCTG
Found at i:14917633 original size:44 final size:45
Alignment explanation
Indices: 14917568--14918020 Score: 165
Period size: 44 Copynumber: 10.5 Consensus size: 45
14917558 CTTCGATCTG
* * * ** *
14917568 CTCCACTACTGCTTAGAGAGATAAGATCT-GTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * *
14917612 CTCTATTGCTGCTCAGGGAGATAAGGTCTACAACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCT--AACAATCTTCAACCTA
* **** * * *
14917659 CTCCACTGCTGCTCAGGGAGATAAG-CCT-AGTGGCTTAAATCTGT
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCT-A
* * * * * ** ** * ** *
14917703 TTCC-CTACTAC-CTTGAGAAGATAAGAT-TCGCCGTCTTCGATTTG
1 CTCCACTGCTGCTC-AG-GGAGATAAGATCTAACAATCTTCAACCTA
** *
14917747 CTCCACTGCT--T-AGGGAGATAAGATCT-GTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * *
14917788 CTCCACTACTGCTCAGGGAGATAGGAT-TCACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* *
14917832 TTCCACTGCTGAC-CAGGGAGAT-AG-------GA--TTC-ACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * * *
14917866 TTCCACTGTTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * *
14917910 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
* * *
14917954 TTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTAACAATCTTCAACCTA
*
14917998 TTCCACTGCTGACT-AGGGAGATA
1 CTCCACTGCTG-CTCAGGGAGATA
14918021 GGATTCACCT
Statistics
Matches: 322, Mismatches: 60, Indels: 54
0.74 0.14 0.12
Matches are distributed among these distances:
34 26 0.08
35 4 0.01
37 1 0.00
41 27 0.08
42 3 0.01
43 20 0.06
44 192 0.60
45 12 0.04
46 2 0.01
47 35 0.11
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (45 bp):
CTCCACTGCTGCTCAGGGAGATAAGATCTAACAATCTTCAACCTA
Found at i:14917927 original size:122 final size:121
Alignment explanation
Indices: 14917778--14918464 Score: 651
Period size: 122 Copynumber: 5.6 Consensus size: 121
14917768 GATCTGTAAT
* *
14917778 TTTCAACCTACTCCACTACTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCT
1 TTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCT
*
14917842 GACCAGGGAGATAGGA-TTC-ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAA
64 GACCAGGGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAA
*
14917899 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCT
1 T-TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCT
*
14917964 GACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACTAGGGAGATAGG------
64 GACCAGGGAGATAGG-------A-CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTACA
14918023 A
121 A
14918024 -TTC-ACCTATTCCACTGCTGACCAGGGAGATA-G-----AA--TTC-ACCTATTCCACTGCTGA
1 TTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGA
14918078 CCAGGGAGATAGGA-TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAA
66 CCAGGGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAA
* *
14918133 TTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTT
1 -TTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCT
*
14918198 GACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGG------
64 GACCAGGGAGATAGG-------A-CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTACA
14918257 A
121 A
* * *
14918258 -TTC-ACCTATTCCACTGTTGACCAAGGAAATAGGACTTACAATCTTCAACCTATTCCACTGCTG
1 TTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTG
* *
14918321 ACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCGCTGCTGACTAGGGAGATAGGATTCACA
65 ACCAGGGAGATAGGAC-T----TC---AACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACA
14918386 A
121 A
* * * * * *
14918387 TCTTCAACCTATTCCACTGCTGACCAGGGAGGTAGAACTTATAATGTTCAACCTATTCTACTACT
1 T-TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCT
* *
14918452 GACTAAGGAGATA
64 GACCAGGGAGATA
14918465 AAGCTTTGTG
Statistics
Matches: 478, Mismatches: 27, Indels: 111
0.78 0.04 0.18
Matches are distributed among these distances:
102 29 0.06
103 3 0.01
105 1 0.00
109 1 0.00
111 3 0.01
112 58 0.12
113 4 0.01
114 1 0.00
115 4 0.01
119 4 0.01
121 5 0.01
122 225 0.47
123 8 0.02
125 2 0.00
129 3 0.01
131 9 0.02
132 118 0.25
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (121 bp):
TTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTACAA
Found at i:14917989 original size:166 final size:158
Alignment explanation
Indices: 14917779--14918417 Score: 772
Period size: 166 Copynumber: 4.0 Consensus size: 158
14917769 ATCTGTAATT
* *
14917779 TTCAACCTACTCCACTACTG-CTCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCT
*
14917842 GACCAGGGAGATAGGA-TTC-ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCA
64 GACCAGGGAGATAGGACTTCTACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCA
14917905 ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAA
128 ACCTATTCCACTGCTGACCAGGGAGATAGG-------A
14917943 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
1 --TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
*
14918008 GACTAGGGAGATAGGA-TTC-ACCTATTCCACTGCTGACCAGGGAGATA-G-----AA--TTC-A
64 GACCAGGGAGATAGGACTTCTACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAA
14918062 CCTATTCCACTGCTGACCAGGGAGATAGGA
129 CCTATTCCACTGCTGACCAGGGAGATAGGA
*
14918092 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATTTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
* *
14918156 CCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
66 CCAGGGAGATAGGACT-----TC-T--ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAA
*
14918221 TCTTCAACCTATTCCACTACTGACCAGGGAGATAGGA
122 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
* * *
14918258 TTC-ACCTATTCCACTGTTGACCAAGGAAATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
* *
14918322 CCAGGGAGATAGGACTTACAATCTTTAACCTATTCCGCTGCTGACTAGGGAGATAGGATTCACAA
66 CCAGGGAGATAGGAC-T----TC--T-ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAA
14918387 TCTTCAACCTATTCCACTGCTGACCAGGGAG
122 TCTTCAACCTATTCCACTGCTGACCAGGGAG
14918418 GTAGAACTTA
Statistics
Matches: 431, Mismatches: 17, Indels: 50
0.87 0.03 0.10
Matches are distributed among these distances:
146 73 0.17
147 4 0.01
149 1 0.00
152 2 0.00
156 57 0.13
157 4 0.01
159 2 0.00
163 2 0.00
165 5 0.01
166 275 0.64
167 6 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (158 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGACTTCTACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACC
TATTCCACTGCTGACCAGGGAGATAGGA
Found at i:14918021 original size:44 final size:44
Alignment explanation
Indices: 14917861--14918464 Score: 714
Period size: 44 Copynumber: 14.6 Consensus size: 44
14917851 GATAGGATTC
*
14917861 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
14917905 ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
14917949 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
14917993 ACCTATTCCACTGCTGACTAGGGAGATAGG-------A--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
14918027 ACCTATTCCACTGCTGACCAGGGAGATA-G------AA--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
14918061 ACCTATTCCACTGCTGACCAGGGAGATAGG-------A--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
14918095 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATTTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
14918139 ACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* *
14918183 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
14918227 ACCTATTCCACTACTGACCAGGGAGATAGG-------A--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* * *
14918261 ACCTATTCCACTGTTGACCAAGGAAATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
14918305 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* *
14918349 ACCTATTCCGCTGCTGACTAGGGAGATAGGA-TTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCA
* * * *
14918393 ACCTATTCCACTGCTGACCAGGGAGGTAGAACTTATAATGTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* * * *
14918437 ACCTATTCTACTACTGACTAAGGAGATA
1 ACCTATTCCACTGCTGACCAGGGAGATA
14918465 AAGCTTTGTG
Statistics
Matches: 504, Mismatches: 32, Indels: 48
0.86 0.05 0.08
Matches are distributed among these distances:
33 1 0.00
34 119 0.24
35 7 0.01
37 2 0.00
41 2 0.00
43 8 0.02
44 363 0.72
45 2 0.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (44 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
Found at i:14919768 original size:15 final size:14
Alignment explanation
Indices: 14919729--14919791 Score: 63
Period size: 15 Copynumber: 4.4 Consensus size: 14
14919719 TGGCCTCTCC
*
14919729 TTTTTTCCTTTTCT
1 TTTTTTCATTTTCT
*
14919743 TTTTATCATTTTCAT
1 TTTTTTCATTTTC-T
* *
14919758 TTTTTTAATTTTAAT
1 TTTTTTCATTTT-CT
*
14919773 TTTTTTCTTTTTCT
1 TTTTTTCATTTTCT
14919787 TTTTT
1 TTTTT
14919792 GGTTTTTTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 17 0.44
15 22 0.56
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTCATTTTCT
Found at i:14919791 original size:14 final size:14
Alignment explanation
Indices: 14919729--14919791 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
14919719 TGGCCTCTCC
*
14919729 TTTTTTCCTTTTCT
1 TTTTTTCTTTTTCT
* *
14919743 TTTTATCATTTTCAT
1 TTTTTTCTTTTTC-T
* **
14919758 TTTTTTAATTTTAAT
1 TTTTTT-CTTTTTCT
14919773 TTTTTTCTTTTTCT
1 TTTTTTCTTTTTCT
14919787 TTTTT
1 TTTTT
14919792 GGTTTTTTTG
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
14 21 0.57
15 13 0.35
16 3 0.08
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTCTTTTTCT
Found at i:14919798 original size:23 final size:23
Alignment explanation
Indices: 14919772--14919815 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14919762 TTAATTTTAA
14919772 TTTTTT-TCTTTTTCTTTTTTGGT
1 TTTTTTGTCTTTTT-TTTTTTGGT
*
14919795 TTTTTTGTGTTTTTTTTTTTG
1 TTTTTTGTCTTTTTTTTTTTG
14919816 AATTGGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (23 bp):
TTTTTTGTCTTTTTTTTTTTGGT
Found at i:14921468 original size:9 final size:9
Alignment explanation
Indices: 14921449--14921481 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
14921439 ATGCAAAGCT
14921449 AATGC-ATG
1 AATGCAATG
14921457 AATGCAATG
1 AATGCAATG
*
14921466 AATGCCATG
1 AATGCAATG
14921475 AATGCAA
1 AATGCAA
14921482 AAGAAGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (9 bp):
AATGCAATG
Found at i:14923855 original size:23 final size:22
Alignment explanation
Indices: 14923812--14923855 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
14923802 AAATTATAAA
* *
14923812 ATATAAAAATATATATGTGTAC
1 ATATAAAAAAATATATATGTAC
14923834 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
14923856 TGTGAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:14924588 original size:23 final size:22
Alignment explanation
Indices: 14924545--14924602 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14924535 TAAGGGTATC
* *
14924545 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14924566 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14924589 TGCATATCATATCT
1 TACAAATCATATCT
14924603 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14924736 original size:14 final size:14
Alignment explanation
Indices: 14924717--14924743 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14924707 CTTAGACTTT
14924717 GTTTTATTATTTTG
1 GTTTTATTATTTTG
14924731 GTTTTATTATTTT
1 GTTTTATTATTTT
14924744 TTTGTGAGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.11, T:0.74
Consensus pattern (14 bp):
GTTTTATTATTTTG
Found at i:14925121 original size:23 final size:23
Alignment explanation
Indices: 14925090--14925140 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14925080 ACCTACTTCC
* * *
14925090 TTACTGTAGTAATTTTTGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
14925113 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
14925136 TTACA
1 TTACA
14925141 CGGTGTACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:14927720 original size:38 final size:39
Alignment explanation
Indices: 14927628--14927736 Score: 202
Period size: 39 Copynumber: 2.8 Consensus size: 39
14927618 CCAATTACCA
14927628 ACCCAACCCAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATAAAACTAAAACTAAAGTCTACCCAATT
14927667 ACCCAACCCAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATAAAACTAAAACTAAAGTCTACCCAATT
*
14927706 A-CCAACCCAATAAAAATAAAACTAAAGTCTA
1 ACCCAACCCAATAAAACTAAAACTAAAGTCTA
14927737 ACTCTTACAC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
38 29 0.42
39 40 0.58
ACGTcount: A:0.51, C:0.28, G:0.03, T:0.17
Consensus pattern (39 bp):
ACCCAACCCAATAAAACTAAAACTAAAGTCTACCCAATT
Found at i:14927874 original size:17 final size:17
Alignment explanation
Indices: 14927854--14927916 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
14927844 TAATTTCAAG
14927854 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
14927871 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
14927889 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
14927908 AATTATGTA
1 AATTATGTA
14927917 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:14927878 original size:37 final size:37
Alignment explanation
Indices: 14927851--14927925 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
14927841 TGTTAATTTC
* *
14927851 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
14927888 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
14927925 A
1 A
14927926 TTTGGGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:14927947 original size:18 final size:18
Alignment explanation
Indices: 14927924--14927964 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
14927914 GTAGTGATTC
14927924 AATTTGGGTAATTCGGGT
1 AATTTGGGTAATTCGGGT
* *
14927942 AATTTGGTTAATTCGGTT
1 AATTTGGGTAATTCGGGT
14927960 AATTT
1 AATTT
14927965 TTAACCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.46
Consensus pattern (18 bp):
AATTTGGGTAATTCGGGT
Found at i:14930856 original size:17 final size:18
Alignment explanation
Indices: 14930823--14930857 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14930813 TATTATTAAA
*
14930823 TATATTTTAATTAAAATT
1 TATAATTTAATTAAAATT
14930841 TATAATTTAA-TAAAATT
1 TATAATTTAATTAAAATT
14930858 CTTAATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATAATTTAATTAAAATT
Found at i:14930863 original size:17 final size:17
Alignment explanation
Indices: 14930828--14930877 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
14930818 TTAAATATAT
14930828 TTTAATTAAAATT-TATAA
1 TTTAA-TAAAATTCT-TAA
14930846 TTTAATAAAATTCTTAA
1 TTTAATAAAATTCTTAA
14930863 --TAATAAATATTCTTA
1 TTTAATAAA-ATTCTTA
14930878 TATGAATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.23
16 7 0.23
17 10 0.33
18 6 0.20
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTAATAAAATTCTTAA
Found at i:14930868 original size:15 final size:16
Alignment explanation
Indices: 14930848--14930877 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14930838 ATTTATAATT
14930848 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
14930863 TAATAAATATTCTTA
1 TAATAAATATTCTTA
14930878 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:14930893 original size:38 final size:38
Alignment explanation
Indices: 14930844--14931014 Score: 107
Period size: 38 Copynumber: 4.3 Consensus size: 38
14930834 TAAAATTTAT
14930844 AATTTAATAAAATTCTTAATAATAAATATTCTTATATG
1 AATTTAATAAAATTCTTAATAATAAATATTCTTATATG
* * **
14930882 AATTTACTAAAA-TCATAATATATAATACTATT-AAATAT-
1 AATTTAATAAAATTCTTAATA-ATAA-A-TATTCTTATATG
* * * * * * *
14930920 AATTTAA-AATAATTATGATTAAATATATTTTAATTAAAATATAT
1 AATTTAATAA-AATTCTTAAT-AATAAATATT-CTT---ATAT-G
*
14930964 AAATTAATAAAATTCTTAATAATAAATATTCTTATATG
1 AATTTAATAAAATTCTTAATAATAAATATTCTTATATG
*
14931002 AATTTACTAAAAT
1 AATTTAATAAAAT
14931015 CATAATATAT
Statistics
Matches: 96, Mismatches: 23, Indels: 28
0.65 0.16 0.19
Matches are distributed among these distances:
37 12 0.12
38 35 0.36
39 15 0.16
40 5 0.05
42 6 0.06
43 8 0.08
44 13 0.14
45 2 0.02
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (38 bp):
AATTTAATAAAATTCTTAATAATAAATATTCTTATATG
Found at i:14930932 original size:120 final size:120
Alignment explanation
Indices: 14930802--14931430 Score: 1116
Period size: 120 Copynumber: 5.2 Consensus size: 120
14930792 TTAATCATAT
* *
14930802 TTTAACATAATTATTATTAAATATATTTTAATTAAAATTTATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14930867 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATTAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
14930922 TTTAAAATAATTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14930987 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTAT-AAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* **
14931041 TTTAAAATATTTATTATTAAATATATTTTAATTAAAATATATAATTGCATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14931106 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
14931161 TTTAAAATAATTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
14931226 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATGCTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
14931281 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14931346 AAATATTCTTATATAAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
14931401 TTTAAAATAATTATTATTAAATATATTTTA
1 TTTAAAATAATTATTATTAAATATATTTTA
14931431 TAATCTACTT
Statistics
Matches: 483, Mismatches: 25, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
119 112 0.23
120 371 0.77
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:14930961 original size:16 final size:16
Alignment explanation
Indices: 14930917--14930963 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14930907 TACTATTAAA
14930917 TATAATTTAAAATA-AT
1 TATAA-TTAAAATATAT
*
14930933 TATGATT-AAATATAT
1 TATAATTAAAATATAT
*
14930948 TTTAATTAAAATATAT
1 TATAATTAAAATATAT
14930964 AAATTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 5 0.19
15 9 0.35
16 12 0.46
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Done.