Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 55 of 172
Found at i:14930988 original size:15 final size:16
Alignment explanation
Indices: 14930968--14930997 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14930958 ATATATAAAT
14930968 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
14930983 TAATAAATATTCTTA
1 TAATAAATATTCTTA
14930998 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:14931080 original size:14 final size:15
Alignment explanation
Indices: 14931036--14931080 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
14931026 ATACTATAAA
14931036 TATAATTTAAAATATT
1 TATAA-TTAAAATATT
*
14931052 TATTATTAAATATATT
1 TATAATTAAA-ATATT
14931068 T-TAATTAAAATAT
1 TATAATTAAAATAT
14931081 ATAATTGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 4 0.15
15 12 0.46
16 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATAATTAAAATATT
Found at i:14931200 original size:16 final size:16
Alignment explanation
Indices: 14931156--14931202 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14931146 TACTATAAAA
14931156 TATAATTTAAAATA-AT
1 TATAA-TTAAAATATAT
*
14931172 TATGATT-AAATATAT
1 TATAATTAAAATATAT
*
14931187 TTTAATTAAAATATAT
1 TATAATTAAAATATAT
14931203 AAATTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 5 0.19
15 9 0.35
16 12 0.46
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:14931227 original size:15 final size:16
Alignment explanation
Indices: 14931207--14931236 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14931197 ATATATAAAT
14931207 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
14931222 TAATAAATATTCTTA
1 TAATAAATATTCTTA
14931237 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:14931231 original size:239 final size:240
Alignment explanation
Indices: 14930802--14931430 Score: 1161
Period size: 239 Copynumber: 2.6 Consensus size: 240
14930792 TTAATCATAT
* *
14930802 TTTAACATAATTATTATTAAATATATTTTAATTAAAATTTATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14930867 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATTAAATATAATTTAAAATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
14930932 TTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAATAAATATTCTT
131 TTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAATAAATATTCTT
14930997 ATATGAATTTACTAAAATCATAATATATGATACTAT-AAATATAA
196 ATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
* **
14931041 TTTAAAATATTTATTATTAAATATATTTTAATTAAAATATATAATTGCATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14931106 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
14931171 TTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAATAAATATTCTT
131 TTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAATAAATATTCTT
*
14931236 ATATGAATTTACTAAAATCATAATATATGATGCTATAAAATATAA
196 ATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
14931281 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
14931346 AAATATTCTTATATAAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
*
14931411 TTATTATTAAATATATTTTA
131 TTATGATTAAATATATTTTA
14931431 TAATCTACTT
Statistics
Matches: 375, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
239 223 0.59
240 152 0.41
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (240 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
TTATGATTAAATATATTTTAATTAAAATATATAAATTAATAAAATTCTTAATAATAAATATTCTT
ATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:14931320 original size:16 final size:16
Alignment explanation
Indices: 14931282--14931335 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
14931272 AAAATATAAT
14931282 TTAAAATA-ATTATT-A
1 TTAAAATATATT-TTAA
14931297 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
14931312 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
14931330 -TAAAAT
1 TTAAAAT
14931336 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.21
15 8 0.24
16 8 0.24
17 6 0.18
18 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:14931322 original size:18 final size:17
Alignment explanation
Indices: 14931301--14931335 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14931291 TTATTATTAA
*
14931301 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14931319 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14931336 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14931347 original size:15 final size:17
Alignment explanation
Indices: 14931327--14931361 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
14931317 ATATATAATT
14931327 TAATAAA-ATTCTTA-A
1 TAATAAATATTCTTATA
14931342 TAATAAATATTCTTATA
1 TAATAAATATTCTTATA
14931359 TAA
1 TAA
14931362 ATTTACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 7 0.39
17 4 0.22
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAAATATTCTTATA
Found at i:14932885 original size:49 final size:49
Alignment explanation
Indices: 14932813--14932916 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
14932803 AAGAAAAAAC
* *
14932813 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTGAACACTTCATA
*
14932862 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTTAACACTTCATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTGAACACTTCATA
14932911 AAATTA
1 AAATTA
14932917 TAACACATGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.31
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTGAACACTTCATA
Found at i:14935026 original size:64 final size:64
Alignment explanation
Indices: 14934913--14935140 Score: 394
Period size: 64 Copynumber: 3.6 Consensus size: 64
14934903 TTACTTTCTT
* *
14934913 TTTTTAGTGATAATTAT-AATTTT--TG-TAATGT-TAATTATAATTGTTGTAGCATTTGATTAA
1 TTTTTAGTGTTAATTATAAATTTTAGTGTTAAT-TATAATTATAATTTTTGTAGCATTTGATTAA
14934973 TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAA
1 TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAA
14935037 TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAA
1 TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAA
14935101 TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATT
1 TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATT
14935141 TTTAGTGTTA
Statistics
Matches: 161, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
60 16 0.10
61 6 0.04
63 3 0.02
64 136 0.84
ACGTcount: A:0.32, C:0.01, G:0.11, T:0.55
Consensus pattern (64 bp):
TTTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAA
Found at i:14935125 original size:83 final size:83
Alignment explanation
Indices: 14935038--14935285 Score: 469
Period size: 83 Copynumber: 3.0 Consensus size: 83
14935028 TTTGATTAAT
*
14935038 TTTTAGTGTTAATTATAAATTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAATT
1 TTTTAGTGTTAATTATAATTTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAATT
14935103 TTTAGTGTTAATTATAAA
66 TTTAGTGTTAATTATAAA
*
14935121 TTTTAGTGTTAATTATAATTTTTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAATT
1 TTTTAGTGTTAATTATAATTTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAATT
14935186 TTTAGTGTTAATTATAAA
66 TTTAGTGTTAATTATAAA
*
14935204 TTTTAGTGTTAATTATAATTTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAATT
1 TTTTAGTGTTAATTATAATTTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAATT
14935269 TTTAGTGTTAATTATAA
66 TTTAGTGTTAATTATAA
14935286 TTATAATGTT
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 161 1.00
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.54
Consensus pattern (83 bp):
TTTTAGTGTTAATTATAATTTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAATT
TTTAGTGTTAATTATAAA
Found at i:14935189 original size:128 final size:128
Alignment explanation
Indices: 14934944--14935312 Score: 369
Period size: 128 Copynumber: 2.9 Consensus size: 128
14934934 TTTGTAATGT
*
14934944 TAATTATAATTGTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAATTTTAGTGTTAATTAT
1 TAATTATAATTTTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAATTTTAGTGTTAATTAT
* * * *
14935009 AA-TTATAAT-TT--TTGTAGCATTTGATTAAT-TTT-TAG--TGTTAATTATAAATTTTAGTGT
66 AATTTTTAGTGTTAATTATA--A-TT-A-TAATGTTTGTAGCAT-TTGA-T-TAAATTTTAGTGT
14935066 TAATTA
123 TAATTA
14935072 TAATTATAATTTTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAATTTTAGTGTTAATTAT
1 TAATTATAATTTTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAATTTTAGTGTTAATTAT
*
14935137 AATTTTTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAATTTTTAGTGTTAATTA
66 AATTTTTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAAATTTTAGTGTTAATTA
* * *
14935200 TAA--AT--TTTAGTGTTA--A-TT-A-TAATTTTTAGTGTTAATTAT-AATTATAATTGTTGTA
1 TAATTATAATTT-TTG-TAGCATTTGATTAATTTTTAGTGTTAATTATAAATT-TTAGTG-T-TA
14935255 GCATTTGATTAATTTTTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAAA
61 --A-TT-A-TAATTTTTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAAA
14935313 AAAAATTTAA
Statistics
Matches: 213, Mismatches: 10, Indels: 36
0.82 0.04 0.14
Matches are distributed among these distances:
120 4 0.02
121 24 0.11
122 2 0.01
123 4 0.02
124 4 0.02
125 3 0.01
126 6 0.03
127 5 0.02
128 139 0.65
129 11 0.05
130 6 0.03
131 1 0.00
132 4 0.02
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.54
Consensus pattern (128 bp):
TAATTATAATTTTTGTAGCATTTGATTAATTTTTAGTGTTAATTATAAATTTTAGTGTTAATTAT
AATTTTTAGTGTTAATTATAATTATAATGTTTGTAGCATTTGATTAAATTTTAGTGTTAATTA
Found at i:14935251 original size:19 final size:19
Alignment explanation
Indices: 14934913--14935242 Score: 238
Period size: 19 Copynumber: 16.1 Consensus size: 19
14934903 TTACTTTCTT
*
14934913 TTTTTAGTGATAATTATAA
1 TTTTTAGTGTTAATTATAA
*
14934932 TTTTTGTAATGTTAATTATAA
1 -TTTT-TAGTGTTAATTATAA
*
14934953 TTGTTGTAGCAT-TTGA-T-TAA
1 TT-TT-TAG--TGTTAATTATAA
14934973 TTTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
*
14934992 ATTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
**
14935011 TTATAATTTTTG-TAGCATTTGATTAA
1 TT-T--TTAGTGTTA--A-TT-A-TAA
14935037 TTTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
*
14935056 ATTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
**
14935075 TTATAATTTTTG-TAGCATTTGATTAA
1 TT-T--TTAGTGTTA--A-TT-A-TAA
14935101 TTTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
*
14935120 ATTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
14935139 TTTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
* * *
14935158 TTATAATGTTTGTAGCATTTGATTAA
1 TTTTTA-GTGT-TA--A-TT-A-TAA
14935184 TTTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
*
14935203 ATTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
14935222 TTTTTAGTGTTAATTATAA
1 TTTTTAGTGTTAATTATAA
14935241 TT
1 TT
14935243 ATAATTGTTG
Statistics
Matches: 251, Mismatches: 27, Indels: 65
0.73 0.08 0.19
Matches are distributed among these distances:
16 1 0.00
17 3 0.01
18 4 0.02
19 130 0.52
20 19 0.08
21 31 0.12
22 14 0.06
23 12 0.05
24 12 0.05
25 8 0.03
26 17 0.07
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.55
Consensus pattern (19 bp):
TTTTTAGTGTTAATTATAA
Found at i:14935320 original size:51 final size:45
Alignment explanation
Indices: 14935057--14935311 Score: 303
Period size: 45 Copynumber: 6.0 Consensus size: 45
14935047 TAATTATAAA
*
14935057 TTTTAGTGTTAATTATAATTATAATTTTTGTAGCATTTGATTAAT
1 TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAAT
* *
14935102 TTTTAGTGTTAATTATAAATT-TTAGTG-T-TA--A-TT-A-TAAT
1 TTTTAGTGTTAATTAT-AATTATAATTGTTGTAGCATTTGATTAAT
14935140 TTTTAGTGTTAATTATAATTATAA-TGTTTGTAGCATTTGATTAAT
1 TTTTAGTGTTAATTATAATTATAATTG-TTGTAGCATTTGATTAAT
* *
14935185 TTTTAGTGTTAATTATAAATT-TTAGTG-T-TA--A-TT-A-TAAT
1 TTTTAGTGTTAATTAT-AATTATAATTGTTGTAGCATTTGATTAAT
14935223 TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAAT
1 TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAAT
14935268 TTTTAGTGTTAATTATAATTATAA-TGTTTGTAGCATTTGATTAA
1 TTTTAGTGTTAATTATAATTATAATTG-TTGTAGCATTTGATTAA
14935312 AAAAAATTTA
Statistics
Matches: 182, Mismatches: 7, Indels: 42
0.79 0.03 0.18
Matches are distributed among these distances:
37 10 0.05
38 46 0.25
39 4 0.02
40 8 0.04
41 2 0.01
42 2 0.01
43 8 0.04
44 6 0.03
45 86 0.47
46 10 0.05
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (45 bp):
TTTTAGTGTTAATTATAATTATAATTGTTGTAGCATTTGATTAAT
Found at i:14935440 original size:47 final size:48
Alignment explanation
Indices: 14935362--14935452 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
14935352 TAGTGTTAAT
* * *
14935362 TATAATTTTTCTATCAAACAATATAAGTAATATAAAACATTGTTCAAA
1 TATAATTTTTCAATCAAAAAATATAACTAATATAAAACATTGTTCAAA
*
14935410 TATAATTTTT-AATCAAAAAATTTAACTAATATAAAACATTGTT
1 TATAATTTTTCAATCAAAAAATATAACTAATATAAAACATTGTT
14935453 TGAAGACCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 29 0.74
48 10 0.26
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.40
Consensus pattern (48 bp):
TATAATTTTTCAATCAAAAAATATAACTAATATAAAACATTGTTCAAA
Found at i:14935566 original size:17 final size:17
Alignment explanation
Indices: 14935544--14935579 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14935534 GTTTTAAATG
14935544 AAACATATCGAAAATAA
1 AAACATATCGAAAATAA
* *
14935561 AAACATATTGAAACTAA
1 AAACATATCGAAAATAA
14935578 AA
1 AA
14935580 TATAACCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.64, C:0.11, G:0.06, T:0.19
Consensus pattern (17 bp):
AAACATATCGAAAATAA
Found at i:14935853 original size:10 final size:10
Alignment explanation
Indices: 14935838--14935876 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
14935828 CGTGGGATAC
14935838 CATACAGAAA
1 CATACAGAAA
14935848 CATACAGAAA
1 CATACAGAAA
* * *
14935858 CATATATAGA
1 CATACAGAAA
14935868 CATACAGAA
1 CATACAGAA
14935877 TATAAACATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.56, C:0.18, G:0.10, T:0.15
Consensus pattern (10 bp):
CATACAGAAA
Found at i:14935885 original size:15 final size:15
Alignment explanation
Indices: 14935861--14935891 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14935851 ACAGAAACAT
*
14935861 ATATAGACATACAGA
1 ATATAAACATACAGA
14935876 ATATAAACATACAGA
1 ATATAAACATACAGA
14935891 A
1 A
14935892 ACGTAAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.13, G:0.10, T:0.19
Consensus pattern (15 bp):
ATATAAACATACAGA
Found at i:14935907 original size:27 final size:26
Alignment explanation
Indices: 14935867--14935945 Score: 101
Period size: 25 Copynumber: 3.1 Consensus size: 26
14935857 ACATATATAG
14935867 ACATAC-AGAATATAAACATACAGAA
1 ACATACAAGAATATAAACATACAGAA
* *
14935892 ACGTA-AATTGAATATAAACATATAGAA
1 ACATACAA--GAATATAAACATACAGAA
14935919 ACATACAA-AATATAAACATACAGAA
1 ACATACAAGAATATAAACATACAGAA
14935944 AC
1 AC
14935946 CATTTCCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
25 23 0.50
27 21 0.46
28 2 0.04
ACGTcount: A:0.59, C:0.14, G:0.08, T:0.19
Consensus pattern (26 bp):
ACATACAAGAATATAAACATACAGAA
Found at i:14935915 original size:35 final size:36
Alignment explanation
Indices: 14935845--14935934 Score: 87
Period size: 35 Copynumber: 2.5 Consensus size: 36
14935835 TACCATACAG
* *
14935845 AAACATACAGAAACATATATAGACATACAGAATAT-
1 AAACATACAGAAACATAAATAGACATACAAAATATA
* * *
14935880 AAACATACAGAAACGTAAATTGA-ATATAAACATATA
1 AAACATACAGAAACATAAATAGACATACAAA-ATATA
*
14935916 GAAACATACA-AAATATAAA
1 -AAACATACAGAAACATAAA
14935935 CATACAGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
34 5 0.11
35 24 0.53
36 7 0.16
37 9 0.20
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.20
Consensus pattern (36 bp):
AAACATACAGAAACATAAATAGACATACAAAATATA
Found at i:14937582 original size:12 final size:12
Alignment explanation
Indices: 14937543--14937583 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
14937533 CAAAATAATT
14937543 ACAAAGATGCAA
1 ACAAAGATGCAA
*
14937555 ACAAACCAT-C-A
1 ACAAA-GATGCAA
14937566 ACAAAGATGCAA
1 ACAAAGATGCAA
14937578 ACAAAG
1 ACAAAG
14937584 CTGATGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 2 0.08
11 7 0.29
12 13 0.54
13 2 0.08
ACGTcount: A:0.59, C:0.22, G:0.12, T:0.07
Consensus pattern (12 bp):
ACAAAGATGCAA
Found at i:14937884 original size:21 final size:21
Alignment explanation
Indices: 14937859--14937898 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14937849 AGTCTCAACC
14937859 GAAAG-GGGGAAAAGAAAATTT
1 GAAAGAGGGG-AAAGAAAATTT
*
14937880 GAAAGAGGTGAAAGAAAAT
1 GAAAGAGGGGAAAGAAAAT
14937899 GTACCGGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.55, C:0.00, G:0.33, T:0.12
Consensus pattern (21 bp):
GAAAGAGGGGAAAGAAAATTT
Found at i:14938594 original size:11 final size:11
Alignment explanation
Indices: 14938568--14938597 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14938558 TTTCATATTT
*
14938568 CTCTCAAATTC
1 CTCTTAAATTC
14938579 CTCTTAAATTC
1 CTCTTAAATTC
14938590 CTCTTAAA
1 CTCTTAAA
14938598 GCTCTCTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (11 bp):
CTCTTAAATTC
Found at i:14939715 original size:233 final size:230
Alignment explanation
Indices: 14939166--14939858 Score: 1078
Period size: 233 Copynumber: 3.0 Consensus size: 230
14939156 TCCGGAGAAT
* * **
14939166 ATTAACGGAGGTCGAATCGAGATAGGCTGGTTACGAGACACATTCCCTGAGCTAGATGATGATTC
1 ATTAACGGAGGTCGGATCGAGATAGGCTGGTTACGAGACACATT-CCAGAGCCGGATGATGATTC
* *
14939231 TACCGAACTAGAAATAATCTGATATGCTCGTGCATACATTCTTGAGATCATTGGAGGTTATTTGA
65 TACCGAACTAGAAAGAATTTGATATGCTCG-GCATACATTCTTGAGATCATTGGAGGTTATTTGA
* * *
14939296 TGTTGGACTTGTCACGGAACCTTGTACATCTGATATGGCTATTGAAACTTGTTGATTTTAGAGCA
129 TGTCGGACTTGTCACGGAACCTTGTACATCTGAGATGGCTACTGAAACTTGTTGATTTTAGAGCA
14939361 GC--TG-----AGTTAGGGGTCTGCCGTGTTGGCAAC
194 GCTGTGAATTTAGTTAGGGGTCTGCCGTGTTGGCAAC
*
14939391 ATTAACGGAGGTCGGATCGAGATAGGCTAGTTACGAGACACATTCCTAGAGCCGGATGATGATTC
1 ATTAACGGAGGTCGGATCGAGATAGGCTGGTTACGAGACACATTCC-AGAGCCGGATGATGATTC
*
14939456 TACCGAACTAGAAAGAATTCGATATGCTCAGGCATACATTCTTGAGATCATTGGAGGTTATTTGA
65 TACCGAACTAGAAAGAATTTGATATGCTC-GGCATACATTCTTGAGATCATTGGAGGTTATTTGA
14939521 TGTCGGACTTGTCACGGAACCTTGTACATCTGAGATGGCTACTGAAACTTGTTGATTTTAGAGCA
129 TGTCGGACTTGTCACGGAACCTTGTACATCTGAGATGGCTACTGAAACTTGTTGATTTTAGAGCA
*
14939586 GCTAGTGAATTTAGTTAGGGGTCTGCCATGTTGGCAAC
194 GCT-GTGAATTTAGTTAGGGGTCTGCCGTGTTGGCAAC
* *
14939624 ATTAACGGAGGTCGGATCGAGATAGGCTGGTTATGAGACACATTCTCGGAGCCGGATGATGATTC
1 ATTAACGGAGGTCGGATCGAGATAGGCTGGTTACGAGACACATTC-CAGAGCCGGATGATGATTC
* * *
14939689 TACCGAACTAGAAAGAATTTGATATGCTCGGGTATACATTCTTGAGATCATTAGAGGTTATTTAA
65 TACCGAACTAGAAAGAATTTGATATGCTC-GGCATACATTCTTGAGATCATTGGAGGTTATTTGA
*
14939754 TGTCGGACTTGTCACGGAACCTTATACATCTGAGATGGCTACTGAAACTTGTTGATTTTAGAGCA
129 TGTCGGACTTGTCACGGAACCTTGTACATCTGAGATGGCTACTGAAACTTGTTGATTTTAGAGCA
* *
14939819 GCTGGTGAATTTAGTTA-GGGTCCGTCGTGTTGGCAAC
194 GCT-GTGAATTTAGTTAGGGGTCTGCCGTGTTGGCAAC
14939856 ATT
1 ATT
14939859 GTATCGGGAG
Statistics
Matches: 432, Mismatches: 25, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
224 2 0.00
225 181 0.42
226 1 0.00
228 2 0.00
232 20 0.05
233 225 0.52
234 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (230 bp):
ATTAACGGAGGTCGGATCGAGATAGGCTGGTTACGAGACACATTCCAGAGCCGGATGATGATTCT
ACCGAACTAGAAAGAATTTGATATGCTCGGCATACATTCTTGAGATCATTGGAGGTTATTTGATG
TCGGACTTGTCACGGAACCTTGTACATCTGAGATGGCTACTGAAACTTGTTGATTTTAGAGCAGC
TGTGAATTTAGTTAGGGGTCTGCCGTGTTGGCAAC
Found at i:14940224 original size:7 final size:7
Alignment explanation
Indices: 14940209--14940241 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
14940199 TAGTCGATTC
14940209 GTATTTA
1 GTATTTA
*
14940216 GTGTTTA
1 GTATTTA
14940223 GTATTTA
1 GTATTTA
14940230 GTATTTA
1 GTATTTA
14940237 GTATT
1 GTATT
14940242 ATGTATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:14943268 original size:126 final size:126
Alignment explanation
Indices: 14943043--14943457 Score: 704
Period size: 126 Copynumber: 3.3 Consensus size: 126
14943033 GGCCAAATAG
* *
14943043 GAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTCTTTCAGTACTTTTGTTGACAAAGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
14943108 CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAA
66 CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAA
*
14943169 GAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* * * **
14943234 CTACTTAAAGCATTTTTAACACTATTTGCTCAGAAACGTCTTCTTGAAATTATTTTTTCTG
66 CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAA
* * * *
14943295 GAACTACTGTAGCAAAAGAGCTTCCACATGGGAGCTTCTTTTAGTACTTTTGCTGACAATGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
*
14943360 CTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAA
66 CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAA
*
14943421 TAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
14943458 TTTTAAATTA
Statistics
Matches: 267, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 267 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (126 bp):
GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAA
Found at i:14943671 original size:95 final size:96
Alignment explanation
Indices: 14943498--14943797 Score: 388
Period size: 96 Copynumber: 3.1 Consensus size: 96
14943488 ACCATAAACT
* *
14943498 CTAAACCCTAATTTATTTTAGTTTGTCCTTAAAAACCTTAAACACTAAACCCTAATCTAATTTTT
1 CTAAACCCTAATTTATTTAAGTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAA-TTTT
**
14943563 TTTAAATTTATAATTAATTTACTCAAGTAACC
65 TAAAAATTTATAATTAATTTACTCAAGTAACC
* * * *
14943595 CTAAACTCTAATTTATTTGA-TTTTTCCTT-AAAACCTCTTAACCCTAAACCCTAATCTAATTTT
1 CTAAACCCTAATTTATTTAAGTTTTTCCTTAAAAACCT-TAAACACTAAACCCTAATCTAATTTT
*
14943658 TAAAAATTTATAATTAATTTACTCGAGTAACC
65 TAAAAATTTATAATTAATTTACTCAAGTAACC
* * * * * *
14943690 CTAAACCCTAATTTAATTAATTTTTTCCTTAAAAACCATAAACACGAATCCCTAATCTAATTTTA
1 CTAAACCCTAATTTATTTAAGTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAATTTTT
* * * * *
14943755 AAAAAATTATAATTAATTTAATTAAGAAACA
66 AAAAATTTATAATTAATTTACTCAAGTAACC
14943786 CTAAACCCTAAT
1 CTAAACCCTAAT
14943798 CCCTTATTTA
Statistics
Matches: 177, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
95 57 0.32
96 96 0.54
97 24 0.14
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.39
Consensus pattern (96 bp):
CTAAACCCTAATTTATTTAAGTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAATTTTT
AAAAATTTATAATTAATTTACTCAAGTAACC
Found at i:14944923 original size:18 final size:17
Alignment explanation
Indices: 14944887--14944925 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
14944877 TAATGCATGA
14944887 TATTTAAAATTGTTTAT
1 TATTTAAAATTGTTTAT
* *
14944904 TATTTAGAATTTTATTAT
1 TATTTAAAATTGT-TTAT
14944922 TATT
1 TATT
14944926 AATGACAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TATTTAAAATTGTTTAT
Found at i:14945599 original size:25 final size:25
Alignment explanation
Indices: 14945565--14945621 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
14945555 TCAAGAACTT
14945565 TAAAATATTTTTATTATTTTAAAT-A
1 TAAAATATTTTTATT-TTTTAAATCA
*
14945590 TAAAATA--TTTATTTTTTATATCA
1 TAAAATATTTTTATTTTTTAAATCA
14945613 TAAAATATT
1 TAAAATATT
14945622 AAAATTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 7 0.25
23 14 0.50
25 7 0.25
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
TAAAATATTTTTATTTTTTAAATCA
Found at i:14948002 original size:22 final size:22
Alignment explanation
Indices: 14947961--14948021 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
14947951 AAATAGCAAA
*
14947961 GAGGGAGA-GGAAGAGAGACGAT
1 GAGGGAGAGGGAAG-GGGACGAT
*
14947983 GAGGGA-AGGGAGAGGGGACGGT
1 GAGGGAGAGGGA-AGGGGACGAT
*
14948005 GGGGGAGAGGGAAGGGG
1 GAGGGAGAGGGAAGGGG
14948022 CAGTGATGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 1 0.03
22 25 0.76
23 7 0.21
ACGTcount: A:0.31, C:0.03, G:0.62, T:0.03
Consensus pattern (22 bp):
GAGGGAGAGGGAAGGGGACGAT
Found at i:14949765 original size:21 final size:21
Alignment explanation
Indices: 14949735--14949774 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14949725 TTTTATTTAA
14949735 TATTAATATAAAATTTAAATT
1 TATTAATATAAAATTTAAATT
* * *
14949756 TATTATTATATATTTTAAA
1 TATTAATATAAAATTTAAA
14949775 AAATATTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTAATATAAAATTTAAATT
Found at i:14950489 original size:29 final size:30
Alignment explanation
Indices: 14950446--14950512 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
14950436 ATAAAGAGAT
14950446 TAAATT-TTTAAAAATACAAATACAA-AGAC
1 TAAATTCTTTAAAAATACAAATACAAGA-AC
* * *
14950475 TAAATTCTTT-AAAATATAATTACATGAAC
1 TAAATTCTTTAAAAATACAAATACAAGAAC
14950504 TAAATTCTT
1 TAAATTCTT
14950513 AAATTTCGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (30 bp):
TAAATTCTTTAAAAATACAAATACAAGAAC
Found at i:14953548 original size:19 final size:18
Alignment explanation
Indices: 14953466--14953556 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 18
14953456 AAAAATGAAA
*
14953466 AAAAAGTACAAAAATATTT
1 AAAAATTACAAAAA-ATTT
14953485 AAAAATTACAAAAAATAATT
1 AAAAATTACAAAAAAT--TT
*
14953505 AAGGAAA-T--AAAAAATAT
1 AA--AAATTACAAAAAATTT
14953522 -AAAATTACAAAAAATTT
1 AAAAATTACAAAAAATTT
14953539 AAAAATTTACTAAAAAAT
1 AAAAA-TTAC-AAAAAAT
14953557 AAAAAATATA
Statistics
Matches: 59, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
14 3 0.05
15 1 0.02
16 1 0.02
17 9 0.15
18 6 0.10
19 24 0.41
20 11 0.19
21 1 0.02
22 3 0.05
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.25
Consensus pattern (18 bp):
AAAAATTACAAAAAATTT
Found at i:14953559 original size:18 final size:17
Alignment explanation
Indices: 14953512--14953561 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
14953502 ATTAAGGAAA
14953512 TAAAAAATATAAAATTAC
1 TAAAAAATA-AAAATTAC
14953530 -AAAAAATTTAAAAATTTAC
1 TAAAAAA--TAAAAA-TTAC
14953549 TAAAAAATAAAAA
1 TAAAAAATAAAAA
14953562 ATATAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 6 0.21
18 10 0.36
19 6 0.21
20 6 0.21
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAAAATAAAAATTAC
Found at i:14953561 original size:19 final size:19
Alignment explanation
Indices: 14953512--14953563 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
14953502 ATTAAGGAAA
*
14953512 TAAAAAATATAAAA-TTAC
1 TAAAAAATAAAAAATTTAC
*
14953530 -AAAAAATTTAAAAATTTAC
1 TAAAAAA-TAAAAAATTTAC
14953549 TAAAAAATAAAAAAT
1 TAAAAAATAAAAAAT
14953564 ATAATATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 6 0.21
18 5 0.18
19 11 0.39
20 6 0.21
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAAAATAAAAAATTTAC
Found at i:14953745 original size:21 final size:21
Alignment explanation
Indices: 14953721--14953760 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14953711 TAGATAAATT
14953721 TTTTACAAATTATTTAAATAA
1 TTTTACAAATTATTTAAATAA
***
14953742 TTTTATTTATTATTTAAAT
1 TTTTACAAATTATTTAAAT
14953761 TATTACTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTACAAATTATTTAAATAA
Found at i:14957857 original size:5 final size:5
Alignment explanation
Indices: 14957847--14957871 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14957837 CTTGTTATTG
14957847 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
14957872 TGCCAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:14959499 original size:49 final size:49
Alignment explanation
Indices: 14959446--14959618 Score: 163
Period size: 50 Copynumber: 3.5 Consensus size: 49
14959436 CAAAGTCATG
* *
14959446 TCCCAGACATGGTCTTACATGGGATGTTTTC-TGTAC-TGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGTGCCAATGCCATA
* * * * *
14959495 TCCCAAATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGTCATG
1 TCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGCCATA
* ** * * *
14959545 TCCCAGACATGGTCTTAC-GGTGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATG-GGAGTTCTCATATC-GTGCCAATGCCATA
14959595 TCCCAGACATGGTCTTACATGGGA
1 TCCCAGACATGGTCTTACATGGGA
14959619 CTCTTACATG
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
48 6 0.06
49 25 0.25
50 70 0.69
51 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGGGAGTTCTCATATCGTGCCAATGCCATA
Found at i:14959625 original size:13 final size:14
Alignment explanation
Indices: 14959607--14959637 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
14959597 CCAGACATGG
14959607 TCTTACATGGGA-C
1 TCTTACATGGGACC
14959620 TCTTACATGGGACC
1 TCTTACATGGGACC
14959634 TCTT
1 TCTT
14959638 TACCTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.35
Consensus pattern (14 bp):
TCTTACATGGGACC
Found at i:14965327 original size:22 final size:23
Alignment explanation
Indices: 14965299--14965343 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14965289 ATGCAATCTC
14965299 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
14965321 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
14965344 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:14965634 original size:15 final size:16
Alignment explanation
Indices: 14965609--14965647 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14965599 TTTTTCCCTT
14965609 TTTATTTATTTCCAAA
1 TTTATTTATTTCCAAA
*
14965625 TTTA-TTATTTTCAAA
1 TTTATTTATTTCCAAA
*
14965640 TTTGTTTA
1 TTTATTTA
14965648 CATTTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTATTTATTTCCAAA
Found at i:14965788 original size:23 final size:23
Alignment explanation
Indices: 14965744--14965789 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14965734 CTATTTTTTA
* *
14965744 TTTATTATTATTAAATTAATTAT
1 TTTAATATTATTAAACTAATTAT
14965767 TTTAATATTATTAATACT-ATTAT
1 TTTAATATTATTAA-ACTAATTAT
14965790 GTGGCATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTAATATTATTAAACTAATTAT
Found at i:14965956 original size:36 final size:36
Alignment explanation
Indices: 14965881--14965956 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
14965871 CATACATACG
*
14965881 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
14965918 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
14965954 TTT
1 TTT
14965957 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:14966061 original size:27 final size:27
Alignment explanation
Indices: 14966031--14966098 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
14966021 TATATTTTTT
14966031 ATTTTTTATAATTCACATACATATA-TA
1 ATTTTTTATAATT-ACATACATATATTA
* *
14966058 ATTTTCTTAT-ATGTACATATATATATTT
1 ATTTT-TTATAAT-TACATACATATATTA
*
14966086 ATATTTTATAATT
1 ATTTTTTATAATT
14966099 TTTATCTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.54
Consensus pattern (27 bp):
ATTTTTTATAATTACATACATATATTA
Found at i:14966268 original size:3 final size:3
Alignment explanation
Indices: 14966262--14966291 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14966252 TTATCTTTTC
14966262 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14966292 GTTCTTGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14969670 original size:14 final size:15
Alignment explanation
Indices: 14969646--14969678 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14969636 TCCCAAGCTG
*
14969646 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
14969661 GGAA-GACCTTATCT
1 GGAAGGACCTTATCT
14969675 GGAA
1 GGAA
14969679 AAGCGTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:14969781 original size:18 final size:17
Alignment explanation
Indices: 14969758--14969809 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
14969748 AAAATATTTT
14969758 AAAAAAAGCAAAAGAAAG
1 AAAAAAAG-AAAAGAAAG
14969776 -AAAAAAGAAAAAGAAAAG
1 AAAAAAAG-AAAAG-AAAG
*
14969794 AGAAAAAGAAAAGAAA
1 AAAAAAAGAAAAGAAA
14969810 AAGGAGAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 15 0.50
18 9 0.30
19 6 0.20
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAGAAAG
Found at i:14969786 original size:6 final size:6
Alignment explanation
Indices: 14969760--14969812 Score: 65
Period size: 6 Copynumber: 9.0 Consensus size: 6
14969750 AATATTTTAA
* *
14969760 AAAAAG CAAAAG AAAGA- AAAAAG AAAAAG AAAAGAG AAAAAG -AAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA-AG AAAAAG AAAAAG
14969807 AAAAAG
1 AAAAAG
14969813 GAGAGGTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 9 0.22
6 25 0.62
7 6 0.15
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:14969806 original size:13 final size:13
Alignment explanation
Indices: 14969772--14969811 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
14969762 AAAGCAAAAG
*
14969772 AAAGAAAAAAGAA
1 AAAGAAAAGAGAA
14969785 AAAGAAAAGAGAA
1 AAAGAAAAGAGAA
14969798 AAAGAAAAGA-AA
1 AAAGAAAAGAGAA
14969810 AA
1 AA
14969812 GGAGAGGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAGAA
Found at i:14969810 original size:18 final size:18
Alignment explanation
Indices: 14969759--14969810 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
14969749 AAATATTTTA
*
14969759 AAAAAAGCAAAAG-AAAG
1 AAAAAAGAAAAAGAAAAG
14969776 AAAAAAGAAAAAGAAAAG
1 AAAAAAGAAAAAGAAAAG
14969794 AGAAAAAG-AAAAGAAAA
1 A-AAAAAGAAAAAGAAAA
14969811 AGGAGAGGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 12 0.38
18 14 0.44
19 6 0.19
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAAGAAAAG
Found at i:14969812 original size:11 final size:12
Alignment explanation
Indices: 14969760--14969812 Score: 65
Period size: 11 Copynumber: 4.5 Consensus size: 12
14969750 AATATTTTAA
*
14969760 AAAAAGCAAAAG
1 AAAAAGAAAAAG
*
14969772 AAAGA-AAAAAG
1 AAAAAGAAAAAG
14969783 AAAAAGAAAAGAG
1 AAAAAGAAAA-AG
14969796 AAAAAG-AAAAG
1 AAAAAGAAAAAG
14969807 AAAAAG
1 AAAAAG
14969813 GAGAGGTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 17 0.47
12 11 0.31
13 8 0.22
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:14971225 original size:50 final size:50
Alignment explanation
Indices: 14971154--14971248 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
14971144 AATCTATAGG
* * *
14971154 CAGCGAATCCTATCTCTTTGGCATTATAGTGGAATAGATTGAAGCCACAA
1 CAGCGAATCCTATCTCCTTGGCAGTATAGTGGAACAGATTGAAGCCACAA
* * *
14971204 CAGCGAATCTTA-CTTCCTTGGCGGTGTAGTGGAACAGATTGAAGC
1 CAGCGAATCCTATC-TCCTTGGCAGTATAGTGGAACAGATTGAAGC
14971249 TACGACGGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 1 0.03
50 37 0.97
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (50 bp):
CAGCGAATCCTATCTCCTTGGCAGTATAGTGGAACAGATTGAAGCCACAA
Found at i:14971262 original size:50 final size:48
Alignment explanation
Indices: 14971180--14971340 Score: 145
Period size: 50 Copynumber: 3.4 Consensus size: 48
14971170 TTTGGCATTA
* * *
14971180 TAGTGGAATAGATTGAAGCCACAACAGCGAATCTTACTTCCTTGGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTT-CTT-GCGGTG
* * ** **
14971230 TAGTGGAACAGATTGAAGCTACGACGGTGAATCTTGTTTCTT-C--AA
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCTTGCGGTG
* *
14971275 CA-TTG--CAGATTGAAGCCACAACGGTGAATCTTACTTCTCTAGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCT-T-GCGGTG
14971322 TAGTGGAACAGATTGAAGC
1 TAGTGGAACAGATTGAAGC
14971341 TACGGCGACG
Statistics
Matches: 84, Mismatches: 19, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
42 29 0.35
43 1 0.01
44 2 0.02
45 2 0.02
47 2 0.02
48 2 0.02
49 3 0.04
50 43 0.51
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (48 bp):
TAGTGGAACAGATTGAAGCCACAACGGTGAATCTTACTTCTTGCGGTG
Found at i:14971354 original size:92 final size:92
Alignment explanation
Indices: 14971189--14971357 Score: 268
Period size: 92 Copynumber: 1.8 Consensus size: 92
14971179 ATAGTGGAAT
*
14971189 AGATTGAAGCCACAACAGCGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCTTAGCGGTGTAGTGGAACAGATTGAAGCTACGA
**
14971254 CGGTGAATCTTGTTTCTTCAACATTGC
66 CGACGAATCTTGTTTCTTCAACATTGC
* *
14971281 AGATTGAAGCCACAACGGTGAATCTTACTT-CTCTAGCGGTGTAGTGGAACAGATTGAAGCTACG
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCT-TAGCGGTGTAGTGGAACAGATTGAAGCTACG
*
14971345 GCGACGAATCTTG
65 ACGACGAATCTTG
14971358 GTTCCCCTAC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 2 0.03
92 68 0.97
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (92 bp):
AGATTGAAGCCACAACAGCGAATCTTACTTCCTTAGCGGTGTAGTGGAACAGATTGAAGCTACGA
CGACGAATCTTGTTTCTTCAACATTGC
Found at i:14971657 original size:168 final size:168
Alignment explanation
Indices: 14971367--14971750 Score: 468
Period size: 168 Copynumber: 2.3 Consensus size: 168
14971357 GGTTCCCCTA
* *** * *
14971367 CATTACAGTCAAATAGATTAAAGCCAAAACGGTGAATCTTACTTCCCTGACGTTATAGCGGAGTA
1 CATTACAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTCCCTAACGTTATAGCGGAGCA
* *
14971432 AATTAAATGTGAGGGTAGTGAATCTTATCTCCTTGGTGTTAAGACTTGAAATAGCTGAAGTGGAG
66 AATTAAATGTGAGGGCAGCGAATCTTATCTCCTTGGTGTTAAGACTTGAAATAGCTGAAGTGGAG
* * * *
14971497 CGGATTGAAGCTGTGGGCAGCGAATCCTATCTCTTTAG
131 CGGATTAAAGCAGTGGGCAACGAATCATATCTCTTTAG
* * * *
14971535 CATTGCAGTCAAATAGATTGAAGCCAAAATAACGAATCTTACTTTCCTAACGTTATAGCTGAGCA
1 CATTACAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTCCCTAACGTTATAGCGGAGCA
* *
14971600 GATTAAA-GCTGAGGGCAGCGAATCTTATCTCAC-TGGTGTTAAGACTT-AGATTAGCTGAAGTG
66 AATTAAATG-TGAGGGCAGCGAATCTTATCTC-CTTGGTGTTAAGACTTGA-AATAGCTGAAGTG
* * *
14971662 GAGTGGATTAAAGCAGTGGGCAATGAATCATATCTCTTTGG
128 GAGCGGATTAAAGCAGTGGGCAACGAATCATATCTCTTTAG
* ** * ***
14971703 CATTATAGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCT
1 CATTACAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTCCCT
14971751 GGCGGTGTAG
Statistics
Matches: 182, Mismatches: 31, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
167 2 0.01
168 179 0.98
169 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (168 bp):
CATTACAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTCCCTAACGTTATAGCGGAGCA
AATTAAATGTGAGGGCAGCGAATCTTATCTCCTTGGTGTTAAGACTTGAAATAGCTGAAGTGGAG
CGGATTAAAGCAGTGGGCAACGAATCATATCTCTTTAG
Found at i:14971740 original size:50 final size:50
Alignment explanation
Indices: 14971700--14971893 Score: 143
Period size: 50 Copynumber: 4.0 Consensus size: 50
14971690 CATATCTCTT
* * *
14971700 TGGCATTATAGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCC
1 TGGCAGTATAGTGGAACAGATTGAAGCCACAACGGTGAATCATACTTCCC
* * * * ** *
14971750 TGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGTGAATC-TTGTT-TC
1 TGGCAGTATAGTGGAACAGATTGAAGCCACAACGGTGAATCATACTTCCC
* * * *
14971798 T-CCA--ACA-TTG--CAGATTGAAGCCACAACGGTGAATCTTACTTCCC
1 TGGCAGTATAGTGGAACAGATTGAAGCCACAACGGTGAATCATACTTCCC
* * * * * * *
14971842 TAGCGGTGTAGTGGAACAGATTGAAGCAACGATGGTGAATCTTACTTCCC
1 TGGCAGTATAGTGGAACAGATTGAAGCCACAACGGTGAATCATACTTCCC
14971892 TG
1 TG
14971894 ACGTTATAGC
Statistics
Matches: 108, Mismatches: 28, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
42 23 0.21
43 3 0.03
44 4 0.04
45 2 0.02
47 2 0.02
48 4 0.04
49 3 0.03
50 67 0.62
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (50 bp):
TGGCAGTATAGTGGAACAGATTGAAGCCACAACGGTGAATCATACTTCCC
Found at i:14971879 original size:92 final size:92
Alignment explanation
Indices: 14971717--14971884 Score: 309
Period size: 92 Copynumber: 1.8 Consensus size: 92
14971707 ATAGTGGAAT
* *
14971717 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCAACGA
14971782 CGGTGAATCTTGTTTCTCCAACATTGC
66 CGGTGAATCTTGTTTCTCCAACATTGC
14971809 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCAACGA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCAACGA
*
14971874 TGGTGAATCTT
66 CGGTGAATCTT
14971885 ACTTCCCTGA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (92 bp):
AGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCAACGA
CGGTGAATCTTGTTTCTCCAACATTGC
Found at i:14972126 original size:478 final size:482
Alignment explanation
Indices: 14971397--14972359 Score: 1515
Period size: 478 Copynumber: 2.0 Consensus size: 482
14971387 AAGCCAAAAC
* *
14971397 GGTGAATCTTACTTCCCTGACGTTATAGCGGAGTAAATTAAATGTGAGGGTAGTGAATCTTATCT
1 GGTGAATCTTACTTCCCTGACGTTATAGCGGAGCAAATTAAATGTGAGGGTAGCGAATCTTATCT
* * *
14971462 CCTTGGTGTTAAGACTTGAAATAGCTGAAGTGGAGCGGATTGAAGCTGTGGGCAGCGAATCCTAT
66 CCTTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAATTGAAGCTGTGGGCAGCGAATCCTAT
*
14971527 CTCTTTAGCATTGCAGTCAAATAGATTGAAGCCAAAATAACGAATCTTACTTTCCTAACGTTATA
131 CTCTTTAGCATTGCAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTTCCTAACGTTATA
*
14971592 GCTGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCACTGGTGTTAAGACTTAGATTAGCTG
196 GCTGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCACTGGCGTTAAGACTTAGATTAGCTG
** ** * *
14971657 AAGTGGAGTGGATTAAAGCAGTGGGCAATGAATCATATCTCTTTGGCATTATAGTGGAATAGATT
261 AAGTGGAGCAGATTAAAGCAGTGGGCAACAAATCATATCTCTTTCGCATTACAGTGGAATAGATT
* * * *
14971722 GAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGTG
326 GAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTAAAGCTACGACGGCG
14971787 AATCTTGTTTCTCCAACA-T-T-G-CAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGG
391 AATCTTGTTTCTCCAACATTGTAGACAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGG
*
14971848 TGTAGTGGAACAGATTGAAGCAACGAT
456 TGTAATGGAACAGATTGAAGCAACGAT
* *
14971875 GGTGAATCTTACTTCCCTGACGTTATAGCGGAGCAAGTTAAA-GCTGAGGGTAGCGAATCTTATT
1 GGTGAATCTTACTTCCCTGACGTTATAGCGGAGCAAATTAAATG-TGAGGGTAGCGAATCTTATC
14971939 TCCTTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAATTGAAGCTGTGGGCAGCGAATCCTA
65 TCCTTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAATTGAAGCTGTGGGCAGCGAATCCTA
* * *** *
14972004 TCTCTTTGGCATTGCATTCAAATAGATTGAAGCCAAAACGGTGAATCTTAC-TTCTCTGACGTTA
130 TCTCTTTAGCATTGCAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTTC-CTAACGTTA
* *
14972068 TAGGTGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTAGATTAGC
194 TAGCTGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCACTGGCGTTAAGACTTAGATTAGC
* * *
14972133 TGAAGTGGAGCAGATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTCGCATTACAGTGGAATAGA
259 TGAAGTGGAGCAGATTAAAGCAGTGGGCAACAAATCATATCTCTTTCGCATTACAGTGGAATAGA
14972198 TTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTAAAGCTACGACGG
324 TTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTAAAGCTACGACGG
*
14972263 CGAATCTTGTTTCTCCAACATTGTAGTTAAATAGATTGAAGCCACAACGGTGAATCTTACTTCCC
389 CGAATCTTGTTTCTCCAACATTGTAG----ACAGATTGAAGCCACAACGGTGAATCTTACTTCCC
* * *
14972328 TGGCGGTGTAATGGAATAGATTGAAGCTACGA
450 TAGCGGTGTAATGGAACAGATTGAAGCAACGA
14972360 CAGCGAATCT
Statistics
Matches: 440, Mismatches: 35, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
477 4 0.01
478 372 0.85
479 1 0.00
480 1 0.00
481 1 0.00
486 61 0.14
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (482 bp):
GGTGAATCTTACTTCCCTGACGTTATAGCGGAGCAAATTAAATGTGAGGGTAGCGAATCTTATCT
CCTTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAATTGAAGCTGTGGGCAGCGAATCCTAT
CTCTTTAGCATTGCAGTCAAATAGATTGAAGCCAAAACAACGAATCTTACTTTCCTAACGTTATA
GCTGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCACTGGCGTTAAGACTTAGATTAGCTG
AAGTGGAGCAGATTAAAGCAGTGGGCAACAAATCATATCTCTTTCGCATTACAGTGGAATAGATT
GAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTAAAGCTACGACGGCG
AATCTTGTTTCTCCAACATTGTAGACAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGG
TGTAATGGAACAGATTGAAGCAACGAT
Found at i:14972250 original size:168 final size:167
Alignment explanation
Indices: 14971851--14972255 Score: 521
Period size: 168 Copynumber: 2.4 Consensus size: 167
14971841 CTAGCGGTGT
* * * *
14971851 AGTGGAACAGATTGAAGCAACGATGGTGAATCTTACTTCCCTGACGTTATAGCGGAGCA-AGTTA
1 AGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACGTTATAG-GGAGCAGA-TTA
* * *
14971915 AAGCTGAGGGTAGCGAATCTTATTTCCTTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAAT
64 AAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAAT
* * * *
14971980 TGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATTGC
129 TAAAGCTGTGGGCAGCAAATCCTATCTCTTTCGCATTAC
* ** * *
14972019 ATTCAAATAGATTGAAGCCAAAACGGTGAATCTTACTTCTCTGACGTTATAGGTGAGCAGATTAA
1 AGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACGTTATAGG-GAGCAGATTAA
* *
14972084 AGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTT-AGATTAGCTGAAGTGGAGC-AGA
65 AGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGA-AATAGCAGAAGTGGAGCGA-A
14972147 TTAAAGCTGTGGGCAGCAAATCCTATCTCTTTCGCATTAC
128 TTAAAGCTGTGGGCAGCAAATCCTATCTCTTTCGCATTAC
* * * *
14972187 AGTGGAATAGATTGAAGCCACAACGATGAATCTTACTTCCCT-AGCGGTGTAGTGGAACAGATTA
1 AGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGA-CGTTATAG-GGAGCAGATTA
14972251 AAGCT
64 AAGCT
14972256 ACGACGGCGA
Statistics
Matches: 204, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
167 4 0.02
168 198 0.97
169 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (167 bp):
AGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACGTTATAGGGAGCAGATTAAA
GCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCAGAAGTGGAGCGAATTA
AAGCTGTGGGCAGCAAATCCTATCTCTTTCGCATTAC
Found at i:14972477 original size:50 final size:50
Alignment explanation
Indices: 14972187--14972469 Score: 246
Period size: 50 Copynumber: 5.7 Consensus size: 50
14972177 TTCGCATTAC
* **
14972187 AGTGGAATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGT
1 AGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTAGCGGTGT
* * * ** * **
14972237 AGTGGAACAGATTAAAGCTACGACGGCGAATCTTGTTTCTCC-AACATTGT
1 AGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTC-CCTAGCGGTGT
** * * *
14972287 AGTTAAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGT
1 AGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTAGCGGTGT
* * * ** * **
14972337 AATGGAATAGATTGAAGCTACGACAGCGAATCTTGTTTCCCTAACATTGT
1 AGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTAGCGGTGT
** * * * *
14972387 AGTTAAATGGATTGAAG-TCACAACGGTGAATCTTACTTCCCTGGCGGTCT
1 AGTGGAATAGATTGAAGCT-ACAACGGCGAATCTTACTTCCCTAGCGGTGT
* *
14972437 AGTGGAACAGATTGAAGCTACGACGGCGAATCT
1 AGTGGAATAGATTGAAGCTACAACGGCGAATCT
14972470 GGTTTCCCCG
Statistics
Matches: 172, Mismatches: 57, Indels: 8
0.73 0.24 0.03
Matches are distributed among these distances:
49 3 0.02
50 166 0.97
51 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (50 bp):
AGTGGAATAGATTGAAGCTACAACGGCGAATCTTACTTCCCTAGCGGTGT
Found at i:14972499 original size:50 final size:50
Alignment explanation
Indices: 14972245--14972504 Score: 209
Period size: 50 Copynumber: 5.2 Consensus size: 50
14972235 GTAGTGGAAC
* *
14972245 AGATTAAAGCTACGACGGCGAATCTTGTTTCTCC-AACATTGTAGTTAAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTC-CCTGACATTGTAGTTAAAT
* * * ** * ** * **
14972295 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAATGGAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGTAGTTAAAT
* *
14972345 AGATTGAAGCTACGACAGCGAATCTTGTTTCCCTAACATTGTAGTTAAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGTAGTTAAAT
* * * ** * ** * ** *
14972395 GGATTGAAG-TCACAACGGTGAATCTTACTTCCCTGGCGGTCTAGTGGAAC
1 AGATTGAAGCT-ACGACGGCGAATCTTGTTTCCCTGACATTGTAGTTAAAT
* * *
14972445 AGATTGAAGCTACGACGGCGAATCTGGTTTCCCCGACATTGCAGTTAAAT
1 AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGTAGTTAAAT
*
14972495 AGATTAAAGC
1 AGATTGAAGC
14972505 CACAATGGCA
Statistics
Matches: 151, Mismatches: 56, Indels: 6
0.71 0.26 0.03
Matches are distributed among these distances:
49 3 0.02
50 147 0.97
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (50 bp):
AGATTGAAGCTACGACGGCGAATCTTGTTTCCCTGACATTGTAGTTAAAT
Found at i:14972532 original size:100 final size:100
Alignment explanation
Indices: 14972192--14972509 Score: 501
Period size: 100 Copynumber: 3.2 Consensus size: 100
14972182 ATTACAGTGG
* * *
14972192 AATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTAAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
14972257 CGACGGCGAATCTTGTTTCTCCAACATTGTAGTTA
66 CGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
* *
14972292 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAATGGAATAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* *
14972357 CGACAGCGAATCTTGTTTCCCTAACATTGTAGTTA
66 CGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
* * *
14972392 AATGGATTGAAGTCACAACGGTGAATCTTACTTCCCTGGCGGTCTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* * *
14972457 CGACGGCGAATCTGGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
*
14972492 AATAGATTAAAGCCACAA
1 AATAGATTGAAGCCACAA
14972510 TGGCAAATCT
Statistics
Matches: 197, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 197 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
CGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
Found at i:14972545 original size:100 final size:100
Alignment explanation
Indices: 14972192--14972556 Score: 450
Period size: 100 Copynumber: 3.6 Consensus size: 100
14972182 ATTACAGTGG
* * * **
14972192 AATAGATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTAAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGTTACAGTGGAACAGATTAAAGCTA
*
14972257 CGACGGCGAATCTTGTTTCTCCAACATTGTAGTTA
66 CGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
* *
14972292 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTA-A-TGGAATAGATTGAAGC
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC-GT-TACAGTGGAACAGATTAAAGC
* *
14972355 TACGACAGCGAATCTTGTTTCCCTAACATTGTAGTTA
64 TACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
* * * *
14972392 AATGGATTGAAGTCACAACGGTGAATCTTACTTCCCTGGCGGT-CTAGTGGAACAGATTGAAGCT
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGTTAC-AGTGGAACAGATTAAAGCT
* * *
14972456 ACGACGGCGAATCTGGTTTCCCCGACATTGCAGTTA
65 ACGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
* * ** * * *
14972492 AATAGATTAAAGCCACAATGGCAAATCTTA-TCTCCTTGGCGTTACAGTAGAACAAATTAAAGCT
1 AATAGATTGAAGCCACAACGGTGAATCTTACT-TCCCTGGCGTTACAGTGGAACAGATTAAAGCT
14972556 A
65 A
14972557 AAGGTAGCGA
Statistics
Matches: 229, Mismatches: 29, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
98 1 0.00
99 3 0.01
100 221 0.97
101 3 0.01
102 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGTTACAGTGGAACAGATTAAAGCTA
CGACGGCGAATCTTGTTTCCCCAACATTGTAGTTA
Found at i:14973388 original size:17 final size:18
Alignment explanation
Indices: 14973349--14973390 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
14973339 AATCTTCAAG
14973349 GATATGCAATCTTAGATAA
1 GATATGCAATCTTAGA-AA
*
14973368 GATATGTAATCTTAG-AA
1 GATATGCAATCTTAGAAA
14973385 GATATG
1 GATATG
14973391 ATTTTGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
19 14 0.64
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.33
Consensus pattern (18 bp):
GATATGCAATCTTAGAAA
Found at i:14973416 original size:22 final size:23
Alignment explanation
Indices: 14973372--14973416 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14973362 AGATAAGATA
*
14973372 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
14973395 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
14973417 GTAGATATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:14973855 original size:23 final size:23
Alignment explanation
Indices: 14973811--14973856 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14973801 TATTTATTTA
* *
14973811 TTTATTATTATTAAATTAATTAT
1 TTTAATATTATTAAACTAATTAT
14973834 TTTAATATTATTAATACT-ATTAT
1 TTTAATATTATTAA-ACTAATTAT
14973857 GTGGCATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTAATATTATTAAACTAATTAT
Found at i:14974086 original size:6 final size:6
Alignment explanation
Indices: 14974075--14974114 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
14974065 ACATATTAAA
* * *
14974075 ATATGT ATATGT ATATGT ATGTGT ATATTT ATATAT ATAT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATAT
14974115 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (6 bp):
ATATGT
Found at i:14974140 original size:29 final size:28
Alignment explanation
Indices: 14974098--14974189 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 28
14974088 TATGTATGTG
* *
14974098 TATATTTATATATATATTTTTTATTTTT
1 TATAATTACATATATATTTTTTATTTTT
* *
14974126 TATAATTCACATATATA--TATAATTTTCT
1 TATAATT-ACATATATATTTTTTATTTT-T
*
14974154 TAT-ATGTACATATATATATTTTTATATTT
1 TATAAT-TACATATATAT-TTTTTATTTTT
14974183 TATAATT
1 TATAATT
14974190 TTTATCTATT
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
27 18 0.36
28 11 0.22
29 13 0.26
30 8 0.16
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (28 bp):
TATAATTACATATATATTTTTTATTTTT
Found at i:14975712 original size:26 final size:26
Alignment explanation
Indices: 14975676--14975726 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14975666 TTCTTCATTG
14975676 CTTTTGAGAAGTGCTGTGGAAAAGTA
1 CTTTTGAGAAGTGCTGTGGAAAAGTA
* *
14975702 CTTTTGAGAAGTGCTTTTGAAAAGT
1 CTTTTGAGAAGTGCTGTGGAAAAGT
14975727 TTGGTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
CTTTTGAGAAGTGCTGTGGAAAAGTA
Found at i:14975713 original size:13 final size:13
Alignment explanation
Indices: 14975674--14975726 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
14975664 AGTTCTTCAT
*
14975674 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
14975687 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
14975700 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
14975713 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
14975726 T
1 T
14975727 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:14981777 original size:7 final size:7
Alignment explanation
Indices: 14981751--14981798 Score: 64
Period size: 7 Copynumber: 6.9 Consensus size: 7
14981741 GTGATGTGAG
14981751 AAAATGA
1 AAAATGA
14981758 AAAGATG-
1 AAA-ATGA
14981765 AAAATGA
1 AAAATGA
14981772 AAAATGA
1 AAAATGA
14981779 AAAATGA
1 AAAATGA
14981786 AAAA-GTA
1 AAAATG-A
14981793 AAAATG
1 AAAATG
14981799 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 4 0.11
7 29 0.78
8 4 0.11
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAATGA
Found at i:14983331 original size:177 final size:177
Alignment explanation
Indices: 14983074--14984415 Score: 1191
Period size: 177 Copynumber: 7.5 Consensus size: 177
14983064 TAAAAAGCAG
* * *
14983074 TAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTTCCA--TA
1 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTC-TT-CATGTA
*** ***
14983137 CTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AG
64 CTGGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-
* *
14983201 AGATAGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAA
128 AGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA
* ***
14983251 TGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATACT
1 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTACT
*** ***
14983316 GGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACAT-AGAGTAGATC-AGA
66 GGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGACATGA-AGTAGATCGA-A
* *
14983379 GATAGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAA
129 GATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA
* * ***
14983428 TGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGGTAATGGATCTTGTCTTCATGTA-
1 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTAC
* * * **
14983491 TTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTC-TCATAATGATGGTGAAGTAGATCG
65 TGGACATGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCAT-GTATTGA-CATGAAGTAGATCG
*** * * *
14983554 AAGATAATGGATCTTGTCTTCATGTATTAACATGGAGTAGATC-AGAGATAG
127 AAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAA
* * *
14983605 CAGATCTTATCTTCATATATTGACATGAAGTAGATC-GAAGAT-G-ATGGATCTTGTCTTCATGT
1 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCA--GATCTTGTCTTCATGT
* * *
14983667 A-TTGACATGGAGTAGATC-AGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCA
63 ACTGGACATGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCG
* *** *
14983730 AAGATAGCAGATCTTGTCTTTCCA--TACTGGTGGTGAAGTAGATCGAAGGTAA
127 AAGATAGCAGATCTTGTC-TT-CATGTA-TTGACATGAAGTAGATCGAAGATAA
*
14983782 TGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTACT
1 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTACT
* * * * * * * *
14983847 AG-CGTGAAGTAGATCGAAGAAAGCAAATCTTATCTTCATGTACTGGCGTGAAGTAGATCGAAGA
66 GGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGA
* * * * *** *
14983911 AAGCAAATCTTGTCTTTATGTACTGGTGTGAAGTAGATCGAAGAAAA
131 TAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA
* * * * * * * *
14983958 CAGATCTTGTCTTCCTCTACTGGCAGCGAAGTAGATCAAATATAGCAGATCTTGTCTTCATGTA-
1 TAGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTAC
* * * * * * *
14984022 TTGACATGAAATAGATCGAAGATAGTAGATCGTGTCTTCATGTATTGACGTGAAGTAAATTGAAG
65 TGGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAG
* * * * *
14984087 AATGGCAGATGTTGTTTTCATGTATTGACACGAAGTAGATCGAAGATAG
130 -ATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA
* * *** *** *** *
14984136 CAGATCTTGTTTTCCCATATTGGTGGTGAAGTAGATC-GAAGATAATGGATCTTGTCTTTATGTA
1 TAGATCTTGTCTTCATGTATT-GACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA
*
14984200 -TTGACATGAAGTAGATCAGAGATAGCATATCAGAGATAGCAGATCTTGTCTTCATGTATTGACA
64 CTGGACATGAAGTAGATC-------G------A-AGATAGCAGATCTTGTCTTCATGTATTGACA
*** * *** *
14984264 TGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGAAGATCGAAGATAA
115 TGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAA
*
14984328 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTA-T
1 TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTACT
*
14984392 -CAGCAGTGAAGTAGATCGAAGATA
66 GGA-CA-TGAAGTAGATCGAAGATA
14984416 CAAGTCTTAT
Statistics
Matches: 957, Mismatches: 161, Indels: 93
0.79 0.13 0.08
Matches are distributed among these distances:
175 4 0.00
176 110 0.11
177 583 0.61
178 114 0.12
179 3 0.00
185 2 0.00
190 1 0.00
191 53 0.06
192 87 0.09
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (177 bp):
TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTACT
GGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGA
TAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA
Found at i:14983458 original size:221 final size:221
Alignment explanation
Indices: 14983165--14984131 Score: 1204
Period size: 221 Copynumber: 4.4 Consensus size: 221
14983155 GAAGATAATG
* *** *
14983165 GATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAGATCTTATCTTCATGTATTG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGGTAATGGATCTTGTCTTCATGTATTG
14983229 ACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATA
65 ACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATA
14983294 GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
130 GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
14983359 TTGACAT-AGAGTAGATCAGAGATAGCA
195 TTGACATGA-AGTAGATCAGAGATAGCA
*
14983386 AATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGA
14983451 CATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAG
66 CATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAG
* * *
14983516 CAGATCTTGTCTTCTCATAATGATGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
131 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
* *
14983581 TAACATGGAGTAGATCAGAGATAGCA
196 TGACATGAAGTAGATCAGAGATAGCA
* * * *
14983607 GATCTTATCTTCATATATTGACATGAAGTAGATCGAAGATGATGGATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGA
* * *** *
14983672 CATGGAGTAGATC-AGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATA
66 CATGAAGTAGATCGA-AGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATA
* *
14983736 GCAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTA
130 GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
14983801 TTGACATGAAGTAGATCAGAGATAGCA
195 TTGACATGAAGTAGATCAGAGATAGCA
* * * * * *
14983828 GATCTTGTCTTCATGTACT-AGCGTGAAGTAGATCGAA-G-AAAGCAAATCTTATCTTCATGTAC
1 GATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGGTAATG--GATCTTGTCTTCATGTAT
* * * * * * ***
14983890 TGGCGTGAAGTAGATCGAA-G-AAAGCAAATCTTGTCTTTATGTACTGGTGTGAAGTAGATC-GA
63 TGACATGAAGTAGATCGAAGGTAATG--GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-
* * ** * * * ***
14983952 AGAAAACAGATCTTGTCTTCCTC-TACTGGCAGCGAAGTAGATCAAATATAGCAGATCTTGTCTT
125 AGATAGCAGATCTTGTCTTCC-CATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTT
* *
14984016 CATGTATTGACATGAAATAGATC-GAAGATAGTA
189 CATGTATTGACATGAAGTAGATCAG-AGATAGCA
* * * * * *
14984049 GATCGTGTCTTCATGTATTGACGTGAAGTAAATTGAA-G-AATGGCAGATGTTGTTTTCATGTAT
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAAT-G--GATCTTGTCTTCATGTAT
*
14984112 TGACACGAAGTAGATCGAAG
63 TGACATGAAGTAGATCGAAG
14984132 ATAGCAGATC
Statistics
Matches: 651, Mismatches: 80, Indels: 28
0.86 0.11 0.04
Matches are distributed among these distances:
219 3 0.00
220 3 0.00
221 609 0.94
222 36 0.06
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.32
Consensus pattern (221 bp):
GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGA
CATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAG
CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
TGACATGAAGTAGATCAGAGATAGCA
Found at i:14984114 original size:45 final size:44
Alignment explanation
Indices: 14983075--14984415 Score: 1127
Period size: 44 Copynumber: 30.0 Consensus size: 44
14983065 AAAAAGCAGT
* * *
14983075 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* *** **
14983119 AGATCTTGTCTTTCCA--TACTGGTGGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTC-TT-CATGTA-TTGACATGAAGTAGATCGAAGATAGC
*
14983164 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* * **
14983208 AGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
*
14983252 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
*** * *** **
14983296 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGC
*
14983341 GGATCTTGTCTTCATGTATTGACAT-AGAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGA-AGTAGATCGA-AGATAGC
* * **
14983385 AAATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* * **
14983429 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGGTAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
*
14983473 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* * ** **
14983517 AGATCTTGTCTTC-TCATAATGATGGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCAT-GTATTGA-CATGAAGTAGATCGAAGATAGC
* * *
14983562 GGATCTTGTCTTCATGTATTAACATGGAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* *
14983606 AGATCTTATCTTCATATATTGACATGAAGTAGATCGAAGAT-G-
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
*
14983648 ATGGATCTTGTCTTCATGTATTGACATGGAGTAGATC-AGAGATAGC
1 A--GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
*
14983694 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* *** * **
14983738 AGATCTTGTCTTTCCA--TACTGGTGGTGAAGTAGATCGAAGGTAAT
1 AGATCTTGTC-TT-CATGTA-TTGACATGAAGTAGATCGAAGATAGC
*
14983783 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* * *
14983827 AGATCTTGTCTTCATGTACT-AGCGTGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGATAGC
* * * * * *
14983871 AAATCTTATCTTCATGTACTGGCGTGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* * * *** * *
14983915 AAATCTTGTCTTTATGTACTGGTGTGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* * * * * * *
14983959 AGATCTTGTCTTCCTCTACTGGCAGCGAAGTAGATCAAATATAGC
1 AGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCGAAGATAGC
* *
14984004 AGATCTTGTCTTCATGTATTGACATGAAATAGATCGAAGATAGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* * * * *
14984048 AGATCGTGTCTTCATGTATTGACGTGAAGTAAATTGAAGAATGGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAG-ATAGC
* * *
14984093 AGATGTTGTTTTCATGTATTGACACGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
* *** *** **
14984137 AGATCTTGTTTTCCCATATTGGTGGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATT-GACATGAAGTAGATCGAAGATAGC
* *
14984182 GGATCTTGTCTTTATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* * * *
14984226 ATATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
1 AGATC-----T---TG-TC-T-TCAT-G--TATTGACATGAAGTAGATCGAAGATAGC
*** * *** * **
14984284 AGATCTTGTCTTCCCATACTGGTGGTGAAGAAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGC
14984329 AGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* *
14984373 AGATCTTGTCTTCCTGTA-TCAGCAGTGAAGTAGATCGAAGATA
1 AGATCTTGTCTTCATGTATTGA-CA-TGAAGTAGATCGAAGATA
14984416 CAAGTCTTAT
Statistics
Matches: 1047, Mismatches: 190, Indels: 119
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.00
43 19 0.02
44 685 0.65
45 287 0.27
46 10 0.01
47 2 0.00
48 1 0.00
49 3 0.00
50 1 0.00
52 1 0.00
53 3 0.00
54 1 0.00
55 2 0.00
58 30 0.03
59 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (44 bp):
AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
Found at i:14984233 original size:14 final size:14
Alignment explanation
Indices: 14984214--14984240 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14984204 CATGAAGTAG
14984214 ATCAGAGATAGCAT
1 ATCAGAGATAGCAT
14984228 ATCAGAGATAGCA
1 ATCAGAGATAGCA
14984241 GATCTTGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (14 bp):
ATCAGAGATAGCAT
Found at i:14984358 original size:147 final size:147
Alignment explanation
Indices: 14984091--14984373 Score: 494
Period size: 147 Copynumber: 1.9 Consensus size: 147
14984081 TTGAAGAATG
* * * *
14984091 GCAGATGTTGTTTTCATGTATTGACACGAAGTAGATCGAAGATAGCAGATCTTGTTTTCCCATAT
1 GCAGATCTTGTCTTCATGTATTGACACGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
* * *
14984156 TGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTTATGTATTGACATGAAGTAGATCAGAG
66 TGGTGGTGAAGAAGATCGAAGATAATAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAG
14984221 ATAGCATATCAGAGATA
131 ATAGCATATCAGAGATA
*
14984238 GCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
1 GCAGATCTTGTCTTCATGTATTGACACGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
14984303 TGGTGGTGAAGAAGATCGAAGATAATAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAG
66 TGGTGGTGAAGAAGATCGAAGATAATAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAG
14984368 ATAGCA
131 ATAGCA
14984374 GATCTTGTCT
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
147 128 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (147 bp):
GCAGATCTTGTCTTCATGTATTGACACGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
TGGTGGTGAAGAAGATCGAAGATAATAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAG
ATAGCATATCAGAGATA
Found at i:14984401 original size:89 final size:89
Alignment explanation
Indices: 14984240--14984415 Score: 266
Period size: 89 Copynumber: 2.0 Consensus size: 89
14984230 CAGAGATAGC
*
14984240 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTA
**
14984305 GTGGTGAAGAAGATCGAAGATAAT
66 GCAGTGAAGAAGATCGAAGATAAT
**
14984329 AGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCCTGTA-T
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCCCATACT
*
14984392 CAGCAGTGAAGTAGATCGAAGATA
65 -AGCAGTGAAGAAGATCGAAGATA
14984416 CAAGTCTTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
88 2 0.03
89 77 0.97
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (89 bp):
AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTA
GCAGTGAAGAAGATCGAAGATAAT
Found at i:14985347 original size:13 final size:14
Alignment explanation
Indices: 14985329--14985357 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14985319 CATATATATA
14985329 TTCTTTTA-TTCTT
1 TTCTTTTATTTCTT
14985342 TTCTTTTATTTCTT
1 TTCTTTTATTTCTT
14985356 TT
1 TT
14985358 AAACGAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (14 bp):
TTCTTTTATTTCTT
Found at i:14990001 original size:18 final size:18
Alignment explanation
Indices: 14989978--14990029 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
14989968 AAAATGTGAG
* *
14989978 AAATGATGTTCATATTTT
1 AAATGATGTTCACATTTC
*
14989996 AAATGATGTTAACATTTC
1 AAATGATGTTCACATTTC
14990014 AAATGATGTTCACATT
1 AAATGATGTTCACATT
14990030 GATGGAAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.42
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:14992377 original size:14 final size:14
Alignment explanation
Indices: 14992358--14992387 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14992348 ATTTTATAAA
14992358 TAATTAATATTCAT
1 TAATTAATATTCAT
14992372 TAATTAATATTCAT
1 TAATTAATATTCAT
14992386 TA
1 TA
14992388 CTTAGAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATTAATATTCAT
Found at i:14992661 original size:13 final size:13
Alignment explanation
Indices: 14992608--14992673 Score: 71
Period size: 13 Copynumber: 5.1 Consensus size: 13
14992598 CTTAAATCAA
*
14992608 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
14992621 A-TTTCTCAAAAGC
1 ACTTT-TCAAAAGC
* **
14992634 ACTTTTCTACTGC
1 ACTTTTCAAAAGC
*
14992647 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
14992660 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
14992673 A
1 A
14992674 ATGCTAAACT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
12 3 0.07
13 36 0.86
14 3 0.07
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:14996964 original size:48 final size:48
Alignment explanation
Indices: 14996893--14996996 Score: 172
Period size: 48 Copynumber: 2.2 Consensus size: 48
14996883 CACGAGAGGC
14996893 TCGATGTCGCAATATAGAAAGCGAAATAGAAAAAGTACAAAACTATCT
1 TCGATGTCGCAATATAGAAAGCGAAATAGAAAAAGTACAAAACTATCT
* * **
14996941 TCGATGTCGCAATATAGAAAGCGAAATGGAGAAAGTATGAAACTATCT
1 TCGATGTCGCAATATAGAAAGCGAAATAGAAAAAGTACAAAACTATCT
14996989 TCGATGTC
1 TCGATGTC
14996997 ACGACACACT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.23
Consensus pattern (48 bp):
TCGATGTCGCAATATAGAAAGCGAAATAGAAAAAGTACAAAACTATCT
Found at i:15012987 original size:30 final size:30
Alignment explanation
Indices: 15012951--15013024 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
15012941 GCATTACACG
15012951 TGGTAGAGGACATGTCTATGGCGTTGGTCA
1 TGGTAGAGGACATGTCTATGGCGTTGGTCA
15012981 TGGTAGAGGACATGTCTATGGCGTTGGTCA
1 TGGTAGAGGACATGTCTATGGCGTTGGTCA
15013011 TGGTAGAGGACATG
1 TGGTAGAGGACATG
15013025 GACGTGAACG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.22, C:0.12, G:0.38, T:0.28
Consensus pattern (30 bp):
TGGTAGAGGACATGTCTATGGCGTTGGTCA
Found at i:15014868 original size:15 final size:15
Alignment explanation
Indices: 15014839--15014871 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15014829 GATAGGGTGA
15014839 GAAAATAAATAATTG
1 GAAAATAAATAATTG
15014854 GAAAA-AAATAGATTG
1 GAAAATAAATA-ATTG
15014869 GAA
1 GAA
15014872 TGAATTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (15 bp):
GAAAATAAATAATTG
Found at i:15018379 original size:21 final size:22
Alignment explanation
Indices: 15018289--15018384 Score: 70
Period size: 22 Copynumber: 4.4 Consensus size: 22
15018279 TGCACCACAC
* *
15018289 TAGTAGGCACCGAAGTGCTTAAG
1 TAGTAGGCACCGAAGTAC-TAAA
* * ** * *
15018312 CAGTAGGCACCAAAGTGTTGAG
1 TAGTAGGCACCGAAGTACTAAA
* * *
15018334 TAGTAGGTATCGAAGTGCTAAA
1 TAGTAGGCACCGAAGTACTAAA
15018356 TAGTAGGCACCGAAGTAC-AAA
1 TAGTAGGCACCGAAGTACTAAA
15018377 TAGT-GGCA
1 TAGTAGGCA
15018385 AGAAAGTACA
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 4 0.07
21 7 0.12
22 33 0.56
23 15 0.25
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (22 bp):
TAGTAGGCACCGAAGTACTAAA
Found at i:15019635 original size:25 final size:25
Alignment explanation
Indices: 15019607--15019662 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
15019597 TTTTCCAAAT
**
15019607 AGGCTTCACAGAGGTTTCACCACAA
1 AGGCTTCACAGAGAATTCACCACAA
*
15019632 AGGCTTCATAGAGAATTCACCACAA
1 AGGCTTCACAGAGAATTCACCACAA
15019657 AGGCTT
1 AGGCTT
15019663 GGTTTGGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (25 bp):
AGGCTTCACAGAGAATTCACCACAA
Found at i:15021790 original size:56 final size:52
Alignment explanation
Indices: 15021712--15021902 Score: 201
Period size: 50 Copynumber: 3.7 Consensus size: 52
15021702 GGGAATGAGA
15021712 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAGA-TATGAGAGG
* * *
15021768 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGGACCGAG--ATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATATGAGAGG
* * * * **
15021818 TCCCTTGTAAGACCATGTGTGGGACATAGCATGGGCACT--GATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATATGAGAGG
* * * *
15021868 TCCCATGTAAGACCATATCTGAGATATGTCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
15021903 TAGTACAGAA
Statistics
Matches: 113, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
50 73 0.65
53 3 0.03
55 1 0.01
56 35 0.31
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (52 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATATGAGAGG
Found at i:15022169 original size:12 final size:12
Alignment explanation
Indices: 15022152--15022190 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15022142 ATTAGTTATT
15022152 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
15022164 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
15022176 TAAGTGAGTAAG
1 TAAGTAAGCAAG
15022188 TAA
1 TAA
15022191 AGAAGCGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:15028671 original size:50 final size:50
Alignment explanation
Indices: 15028613--15028744 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 50
15028603 CATTGATATT
* * * *
15028613 ATGAGAGGTCCCAGGTAAGACCATGTCTGGGACTTGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* * * *
15028663 ATGCGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * *
15028713 ATGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGA
15028745 TATGTCATTG
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:15029024 original size:12 final size:12
Alignment explanation
Indices: 15029007--15029045 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15028997 ATGAGTTATT
15029007 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
15029019 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
15029031 TAAGTGAGTAAG
1 TAAGTAAGCAAG
15029043 TAA
1 TAA
15029046 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:15033047 original size:23 final size:24
Alignment explanation
Indices: 15033021--15033067 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
15033011 TTTAAATTTA
* * *
15033021 TTAAATAATATATTTTTA-TAATT
1 TTAAAAAAAATATATTTACTAATT
15033044 TTAAAAAAAATATATTTACTAATT
1 TTAAAAAAAATATATTTACTAATT
15033068 AAATGAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TTAAAAAAAATATATTTACTAATT
Found at i:15036233 original size:75 final size:75
Alignment explanation
Indices: 15036110--15036261 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 75
15036100 CCAAGCTATT
* *
15036110 TCCTAGCAACTTATAACAAATTTCAAGTTAGGACGTTGGAACACACCATTACTAACCTTTATGAA
1 TCCTAGCAACTTATAACAAATTTCAAGTTAGGAAGTTGGAAAACACCATTACTAACCTTTATGAA
15036175 GCTTTCTCTC
66 GCTTTCTCTC
15036185 TCCTAGCAACTTATAACAAATTTCAAGTTAGGAAGTTGGAAAACACCATTACTAACCTTTATGAA
1 TCCTAGCAACTTATAACAAATTTCAAGTTAGGAAGTTGGAAAACACCATTACTAACCTTTATGAA
15036250 GCTTTCTCTC
66 GCTTTCTCTC
15036260 TC
1 TC
15036262 TAAATTCATC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (75 bp):
TCCTAGCAACTTATAACAAATTTCAAGTTAGGAAGTTGGAAAACACCATTACTAACCTTTATGAA
GCTTTCTCTC
Found at i:15038417 original size:23 final size:23
Alignment explanation
Indices: 15038388--15038509 Score: 156
Period size: 23 Copynumber: 5.3 Consensus size: 23
15038378 ATAAGTGCCA
*
15038388 CACTGATATGTAACCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15038411 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
15038434 CACTAAAATGTAGCCGAAGATAC
1 CACTGATATGTAGCCGAAGCTAC
* *
15038457 CACTAATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15038480 CACTGA-ATTGTAGCCAAAGCTAC
1 CACTGATA-TGTAGCCGAAGCTAC
15038503 CACTGAT
1 CACTGAT
15038510 TAATAACATT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
22 1 0.01
23 84 0.99
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:15038753 original size:18 final size:17
Alignment explanation
Indices: 15038727--15038765 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
15038717 ATTTTCCTTC
15038727 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
15038744 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
15038762 CACA
1 CACA
15038766 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:15041325 original size:49 final size:51
Alignment explanation
Indices: 15041222--15041327 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 51
15041212 AAAAATCTAT
* *
15041222 TTTTTTAAGTCATTTTAAAAGAAGGTTTAAAATTTTAAAATAAAGTTATGA
1 TTTTTTAACTCATTTTAAAAGAAGGTTTAAAATTTTAAAATAAAGTAATGA
* * ** * *
15041273 TTTTTTAACT-ATTTTGAAATAAGGTTTTGATTTTTAAGA-AAAGTAATGA
1 TTTTTTAACTCATTTTAAAAGAAGGTTTAAAATTTTAAAATAAAGTAATGA
15041322 TTTTTT
1 TTTTTT
15041328 CTAAATAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
49 15 0.32
50 23 0.49
51 9 0.19
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (51 bp):
TTTTTTAACTCATTTTAAAAGAAGGTTTAAAATTTTAAAATAAAGTAATGA
Found at i:15041902 original size:10 final size:10
Alignment explanation
Indices: 15041868--15041931 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
15041858 CACTTGTATA
15041868 ATTTTTATTT
1 ATTTTTATTT
*
15041878 ATTCTTATTT
1 ATTTTTATTT
15041888 CATTTTTATTT
1 -ATTTTTATTT
*
15041899 ATTTTCATATCT
1 ATTTT--TATTT
* *
15041911 ATTTATATAT
1 ATTTTTATTT
*
15041921 ATTTATATTT
1 ATTTTTATTT
15041931 A
1 A
15041932 CACATTCCCC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
10 28 0.62
11 9 0.20
12 8 0.18
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:15056225 original size:39 final size:39
Alignment explanation
Indices: 15056144--15056316 Score: 136
Period size: 45 Copynumber: 4.2 Consensus size: 39
15056134 ATTTGCCGGC
* * *
15056144 TTACTGA-TCAGGCAC-TTATGTGCCGACTACTGTTACCG
1 TTACTGATTC-GGCACTTTGTGTGTCGAATACTGTTACCG
*
15056182 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACCG
15056221 TTACTG-TTACCGACTCGACACTTTGTGTGTCGAATACTGTTACCG
1 TTACTGATT--CG----G-CACTTTGTGTGTCGAATACTGTTACCG
* * *
15056266 TTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTGTTACTG
1 TTACTG----A--TTCGGCACTTTGTGTGTCGAATACTGTTACCG
15056311 TTACTG
1 TTACTG
15056317 TTACCGTTAT
Statistics
Matches: 111, Mismatches: 8, Indels: 25
0.77 0.06 0.17
Matches are distributed among these distances:
38 14 0.13
39 27 0.24
40 2 0.02
44 1 0.01
45 63 0.57
46 1 0.01
50 1 0.01
52 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACCG
Found at i:15056243 original size:45 final size:45
Alignment explanation
Indices: 15056171--15056322 Score: 216
Period size: 45 Copynumber: 3.4 Consensus size: 45
15056161 ATGTGCCGAC
* * *
15056171 TACTGTTACCGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGT
*
15056216 TACTGTTACTGTTACCGACTCGACACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGT
* * * *
15056261 TACCGTTACTGTTACAGGTTC-AGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCGATTCGA-CACTTTGTGTGTCGAATACTGT
15056306 TACTGTTACTGTTACCG
1 TACTGTTACTGTTACCG
15056323 TTATTGATTA
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 1 0.01
45 94 0.99
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.39
Consensus pattern (45 bp):
TACTGTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGT
Found at i:15056311 original size:6 final size:6
Alignment explanation
Indices: 15056300--15056341 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
15056290 GTGTGTTGAA
* *
15056300 TACTGT TACTGT TACTGT TACCGT TATTGAT TACTGT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT TACTG
15056342 GTGTGTTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:15063645 original size:45 final size:45
Alignment explanation
Indices: 15063570--15063717 Score: 149
Period size: 45 Copynumber: 3.3 Consensus size: 45
15063560 ATGTGCCGAC
* * * * *
15063570 TACTGTTA-TCGTTACTGATTCGGCAATTTGTGTGTCGAATACTGT
1 TACTGTTACT-GTTACAGACTCAGCACTTTGTGTGTCGAATAATGT
*
15063615 TACTGTTACTGTTATC-GACTC-GACACTTTGTGTGTCGAATATTGT
1 TACTGTTACTGTTA-CAGACTCAG-CACTTTGTGTGTCGAATAATGT
* ** *
15063660 TACCGTTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATAATGT
1 TACTGTTACTGTTACAGACTCAGCACTTTGTGTGTCGAATAATGT
*
15063705 TACTATTACTGTT
1 TACTGTTACTGTT
15063718 TCTGTTACCG
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
44 2 0.02
45 83 0.94
46 3 0.03
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (45 bp):
TACTGTTACTGTTACAGACTCAGCACTTTGTGTGTCGAATAATGT
Found at i:15072028 original size:4 final size:4
Alignment explanation
Indices: 15072019--15072088 Score: 68
Period size: 4 Copynumber: 17.5 Consensus size: 4
15072009 GTGCCCCAAT
* * * * *
15072019 TTCA TTCA TTCA TCCA TCCA TCCA TTCA TCCA TTCA TTCA TTCA TCCA
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA
* * *
15072067 TTCG TTCA CTCA TTCG TTCA TT
1 TTCA TTCA TTCA TTCA TTCA TT
15072089 TGTTTATTCA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.21, C:0.33, G:0.03, T:0.43
Consensus pattern (4 bp):
TTCA
Found at i:15072040 original size:8 final size:8
Alignment explanation
Indices: 15072019--15072069 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
15072009 GTGCCCCAAT
*
15072019 TTCATTCA
1 TTCATCCA
15072027 TTCATCCA
1 TTCATCCA
*
15072035 TCCATCCA
1 TTCATCCA
15072043 TTCATCCA
1 TTCATCCA
*
15072051 TTCATTCA
1 TTCATCCA
15072059 TTCATCCA
1 TTCATCCA
15072067 TTC
1 TTC
15072070 GTTCACTCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (8 bp):
TTCATCCA
Found at i:15072068 original size:16 final size:16
Alignment explanation
Indices: 15072019--15072079 Score: 86
Period size: 16 Copynumber: 3.8 Consensus size: 16
15072009 GTGCCCCAAT
15072019 TTCATTCATTCATCCA
1 TTCATTCATTCATCCA
* *
15072035 TCCATCCATTCATCCA
1 TTCATTCATTCATCCA
15072051 TTCATTCATTCATCCA
1 TTCATTCATTCATCCA
* *
15072067 TTCGTTCACTCAT
1 TTCATTCATTCAT
15072080 TCGTTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.23, C:0.34, G:0.02, T:0.41
Consensus pattern (16 bp):
TTCATTCATTCATCCA
Found at i:15079773 original size:9 final size:9
Alignment explanation
Indices: 15079759--15079787 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15079749 TCATTCCGAA
15079759 AAAAAAAAG
1 AAAAAAAAG
15079768 -AAAAAAAG
1 AAAAAAAAG
15079776 AAAAAAAAG
1 AAAAAAAAG
15079785 AAA
1 AAA
15079788 TAGGGAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:15080876 original size:42 final size:42
Alignment explanation
Indices: 15080810--15081154 Score: 483
Period size: 42 Copynumber: 8.2 Consensus size: 42
15080800 AAGGAAAACA
* * *
15080810 TTCAATGCATTTAGAGGCCCAGGTGCGGAGGTCCATTTGCTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
15080852 TTCATTACATTTAGAGGTCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
15080894 TTCAGTGCATATAGAGACCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
15080936 TTCATTGCATTTAGAGGCCCAGATGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
15080978 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCTTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
15081020 TTCATTGCATATAAAGACCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
**
15081062 TTCATTGCATTTAGAGGCCCAAATGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** * *
15081104 TTCATTATATTTAAAGGCCCAGGTGTGGAGGTCCAATTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
15081146 TTCATTGCA
1 TTCATTGCA
15081155 CTGTATATGA
Statistics
Matches: 264, Mismatches: 39, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 264 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:15081040 original size:126 final size:126
Alignment explanation
Indices: 15080810--15081154 Score: 555
Period size: 126 Copynumber: 2.7 Consensus size: 126
15080800 AAGGAAAACA
* * * * *
15080810 TTCAATGCATTTAGAGGCCCAGGTGCGGAGGTCCATTTGCTTTTCATTACATTTAGAGGTCCAGG
1 TTCATTGCATTTAGAGGCCCAGATGTGGAGGTCCATTTACTTTTCATTACATTTAGAGGCCCAGG
* * *
15080875 TGTGGAGGTCCATTCACTTTTCAGTGCATATAGAGACCCAGGTGTGGAGGTCCATTCACTT
66 TGTGGAGGTCCATTTACTTTTCATTGCATATAAAGACCCAGGTGTGGAGGTCCATTCACTT
* *
15080936 TTCATTGCATTTAGAGGCCCAGATGTGGAGGTTCATTTACTTTTCATTGCATTTAGAGGCCCAGG
1 TTCATTGCATTTAGAGGCCCAGATGTGGAGGTCCATTTACTTTTCATTACATTTAGAGGCCCAGG
*
15081001 TGTGGAGGTCCTTTTACTTTTCATTGCATATAAAGACCCAGGTGTGGAGGTCCATTCACTT
66 TGTGGAGGTCCATTTACTTTTCATTGCATATAAAGACCCAGGTGTGGAGGTCCATTCACTT
* * *
15081062 TTCATTGCATTTAGAGGCCCAAATGTGGAGGTCCATTTACTTTTCATTATATTTAAAGGCCCAGG
1 TTCATTGCATTTAGAGGCCCAGATGTGGAGGTCCATTTACTTTTCATTACATTTAGAGGCCCAGG
*
15081127 TGTGGAGGTCCAATTACTTTTCATTGCA
66 TGTGGAGGTCCATTTACTTTTCATTGCA
15081155 CTGTATATGA
Statistics
Matches: 201, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 201 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (126 bp):
TTCATTGCATTTAGAGGCCCAGATGTGGAGGTCCATTTACTTTTCATTACATTTAGAGGCCCAGG
TGTGGAGGTCCATTTACTTTTCATTGCATATAAAGACCCAGGTGTGGAGGTCCATTCACTT
Found at i:15081616 original size:3 final size:3
Alignment explanation
Indices: 15081610--15081664 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
15081600 TATTATCATC
15081610 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT
15081658 ACT ACT A
1 ACT ACT A
15081665 TTAAATAACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ACT
Found at i:15082272 original size:150 final size:152
Alignment explanation
Indices: 15082034--15082444 Score: 557
Period size: 150 Copynumber: 2.7 Consensus size: 152
15082024 TTTTTAAAAA
* *
15082034 AAAAAGAGAAAGTTTAGATTTT-AACAAATAAAAATATGTTTTTTTTAGTTATTTTAAAGGAAGG
1 AAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTTTTAGTCATTTTAAAGGAAAG
* *
15082098 TTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTAACTATTTCAAAGTAAAAG-GTTAATCTT
65 TTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTAACTATTTCAAAATAAAAGCGTTAACCTT
15082162 TAAGAAAAATAG-TGCTTTTTTT
130 TAAGAAAAATAGTTGCTTTTTTT
* * *
15082184 -AAAGGAGAAAGTTTAGATTTTGAAAACTAAAAATATGTATTTTTTTAGTCATTTTAAAAGAAAG
1 AAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGT-TTTTTTTAGTCATTTTAAAGGAAAG
* * * *
15082248 TTTAAAATTTTAAAACAAAATTTTGATTTTTTTTTCAGCTATTTCAAAATAAAAGCTTTAACCTT
65 TTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTAACTATTTCAAAATAAAAGCGTTAACCTT
**
15082313 TAAGAAAAATAGTTTTTTTTTTT
130 TAAGAAAAATAGTTGCTTTTTTT
* *
15082336 AAAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATCT-TTTTTGTTAAGTCATTTTAAAGGA
1 ---AAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTT-TTTAGTCATTTTAAAGGA
* * *
15082400 AAGTTTATAATTTTAAAATAAAGTTTT-A-ATTTTTTTTAACTATTT
62 AAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTAACTATTT
15082445 TGAAATAAGG
Statistics
Matches: 228, Mismatches: 24, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
149 33 0.14
150 75 0.33
151 19 0.08
152 8 0.04
153 14 0.06
154 5 0.02
155 41 0.18
156 33 0.14
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (152 bp):
AAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTCATTTTAAAGGAAAGT
TTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTAACTATTTCAAAATAAAAGCGTTAACCTTT
AAGAAAAATAGTTGCTTTTTTT
Found at i:15082282 original size:53 final size:54
Alignment explanation
Indices: 15082180--15082280 Score: 129
Period size: 53 Copynumber: 1.9 Consensus size: 54
15082170 ATAGTGCTTT
*
15082180 TTTTAAAGGAGAAAGTTTAGATTTTGAAAACTAAAAATATGTATTTTTTTAGTCA
1 TTTTAAA-GAGAAAGTTTAAATTTTGAAAACTAAAAATATGTATTTTTTTAGTCA
* *
15082235 TTTTAAA-AGAAAGTTTAAAATTTT-AAAAC-AAAATTTTG-ATTTTTTT
1 TTTTAAAGAGAAAGTTT-AAATTTTGAAAACTAAAAATATGTATTTTTTT
15082281 TTCAGCTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
51 8 0.19
52 7 0.17
53 14 0.33
54 6 0.14
55 7 0.17
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.45
Consensus pattern (54 bp):
TTTTAAAGAGAAAGTTTAAATTTTGAAAACTAAAAATATGTATTTTTTTAGTCA
Found at i:15082431 original size:19 final size:20
Alignment explanation
Indices: 15082389--15082432 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15082379 TTGTTAAGTC
*
15082389 ATTTTAAAGGAAAGTTTATA
1 ATTTTAAAAGAAAGTTTATA
*
15082409 ATTTTAAAATAAAGTTT-TA
1 ATTTTAAAAGAAAGTTTATA
15082428 ATTTT
1 ATTTT
15082433 TTTTAACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (20 bp):
ATTTTAAAAGAAAGTTTATA
Found at i:15083087 original size:10 final size:10
Alignment explanation
Indices: 15083054--15083114 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
15083044 ACTAGTATAA
15083054 TTTTATTTAT
1 TTTTATTTAT
* *
15083064 TCTTATTTCGT
1 TTTTATTT-AT
15083075 TTTTATTTAT
1 TTTTATTTAT
*
15083085 TTTCATGTCTAT
1 TTTTAT-T-TAT
*
15083097 TTATATTTAT
1 TTTTATTTAT
15083107 TTATTATT
1 TT-TTATT
15083115 ATTATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
10 18 0.46
11 14 0.36
12 7 0.18
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:15090806 original size:24 final size:23
Alignment explanation
Indices: 15090763--15090809 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15090753 ATTTATTTTA
*
15090763 AAAATAATATATTATTAAATAAT
1 AAAATAATATATTATAAAATAAT
15090786 AAAATAAT-TAATCTATAAAATAAT
1 AAAATAATAT-AT-TATAAAATAAT
15090810 GAATTAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 10 0.48
24 10 0.48
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAATAATATATTATAAAATAAT
Found at i:15096265 original size:17 final size:17
Alignment explanation
Indices: 15096221--15096268 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
15096211 ATACTTACAG
*
15096221 AAGAGTTCGCCAAACCA
1 AAGAGTTCGCCAAAACA
* ***
15096238 CAGAACACGCCAAAACA
1 AAGAGTTCGCCAAAACA
15096255 AAGAGTTCGCCAAA
1 AAGAGTTCGCCAAA
15096269 TGACGCATCA
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.08
Consensus pattern (17 bp):
AAGAGTTCGCCAAAACA
Found at i:15101678 original size:30 final size:30
Alignment explanation
Indices: 15101623--15101684 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
15101613 CACTAAGCAA
15101623 GTTTCATATACATGTATCATCCATTTC-AT
1 GTTTCATATACATGTATCATCCATTTCTAT
15101652 GTTTCAATATATCATGTAAT-AT-CATTTCTAT
1 GTTTC-ATATA-CATGT-ATCATCCATTTCTAT
15101683 GT
1 GT
15101685 ATTTCATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 11 0.38
31 11 0.38
32 2 0.07
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (30 bp):
GTTTCATATACATGTATCATCCATTTCTAT
Found at i:15101890 original size:25 final size:24
Alignment explanation
Indices: 15101843--15101939 Score: 79
Period size: 25 Copynumber: 3.9 Consensus size: 24
15101833 GTATGCCCAA
* * *
15101843 ACGAGCTGTGAATCAGTATGCTCTC
1 ACGAGCTG-AAATCGGTAAGCTCTC
*
15101868 ACGAGCTGTAAACCGGTAAGCTCAT-
1 ACGAGCTG-AAATCGGTAAGCTC-TC
* * *
15101893 ATGAGTTGAGAATAGGTAAGCTCTC
1 ACGAGCTGA-AATCGGTAAGCTCTC
*
15101918 ACGAGCTGAAATTGGTAAGCTC
1 ACGAGCTGAAATCGGTAAGCTC
15101940 ATACGAACTG
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
24 14 0.24
25 43 0.74
26 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (24 bp):
ACGAGCTGAAATCGGTAAGCTCTC
Found at i:15101960 original size:49 final size:50
Alignment explanation
Indices: 15101843--15101960 Score: 139
Period size: 49 Copynumber: 2.4 Consensus size: 50
15101833 GTATGCCCAA
* * *
15101843 ACGAGCTGTGAATCAGTATGCTCTCACGAGCTGTAAACCGGTAAGCTCAT
1 ACGAGCTGAGAATCGGTAAGCTCTCACGAGCTGTAAACCGGTAAGCTCAT
* * * **
15101893 ATGAGTTGAGAATAGGTAAGCTCTCACGAGCTG-AAATTGGTAAGCTCAT
1 ACGAGCTGAGAATCGGTAAGCTCTCACGAGCTGTAAACCGGTAAGCTCAT
* *
15101942 ACGAACTGGGAATCGGTAA
1 ACGAGCTGAGAATCGGTAA
15101961 TCCCTAATGA
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
49 28 0.51
50 27 0.49
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (50 bp):
ACGAGCTGAGAATCGGTAAGCTCTCACGAGCTGTAAACCGGTAAGCTCAT
Found at i:15103899 original size:18 final size:18
Alignment explanation
Indices: 15103868--15103902 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15103858 ACTTAGTTGT
* *
15103868 TTTCTTCTTTCCCTTAGC
1 TTTCTACTTCCCCTTAGC
15103886 TTTCTACTTCCCCTTAG
1 TTTCTACTTCCCCTTAG
15103903 AGGACAAGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.34, G:0.06, T:0.51
Consensus pattern (18 bp):
TTTCTACTTCCCCTTAGC
Found at i:15112385 original size:262 final size:262
Alignment explanation
Indices: 15111920--15112444 Score: 1050
Period size: 262 Copynumber: 2.0 Consensus size: 262
15111910 AATAAGCTTG
15111920 TGGGAATGGAATATTGGATAAATTAGTTGAAATGTGATAGATGGACATTGTTTAGGGTGTTACAA
1 TGGGAATGGAATATTGGATAAATTAGTTGAAATGTGATAGATGGACATTGTTTAGGGTGTTACAA
15111985 AATGAAACATTGATACATTCACAGATGGGATGAAATTTATTAAATTTCATTCACCGAAGCTGTCA
66 AATGAAACATTGATACATTCACAGATGGGATGAAATTTATTAAATTTCATTCACCGAAGCTGTCA
15112050 ATTTTCAAGTTCAAGAAATCATTAGAATTGCGACATCTTTTTGGATGGGATCCAGGAATTTCTTG
131 ATTTTCAAGTTCAAGAAATCATTAGAATTGCGACATCTTTTTGGATGGGATCCAGGAATTTCTTG
15112115 GTTAAGATATCTTCATGGTGGTTGAAGATCCATCTCTTAGCTTCGAAACACACTTTGAACCACTC
196 GTTAAGATATCTTCATGGTGGTTGAAGATCCATCTCTTAGCTTCGAAACACACTTTGAACCACTC
15112180 GA
261 GA
15112182 TGGGAATGGAATATTGGATAAATTAGTTGAAATGTGATAGATGGACATTGTTTAGGGTGTTACAA
1 TGGGAATGGAATATTGGATAAATTAGTTGAAATGTGATAGATGGACATTGTTTAGGGTGTTACAA
15112247 AATGAAACATTGATACATTCACAGATGGGATGAAATTTATTAAATTTCATTCACCGAAGCTGTCA
66 AATGAAACATTGATACATTCACAGATGGGATGAAATTTATTAAATTTCATTCACCGAAGCTGTCA
15112312 ATTTTCAAGTTCAAGAAATCATTAGAATTGCGACATCTTTTTGGATGGGATCCAGGAATTTCTTG
131 ATTTTCAAGTTCAAGAAATCATTAGAATTGCGACATCTTTTTGGATGGGATCCAGGAATTTCTTG
15112377 GTTAAGATATCTTCATGGTGGTTGAAGATCCATCTCTTAGCTTCGAAACACACTTTGAACCACTC
196 GTTAAGATATCTTCATGGTGGTTGAAGATCCATCTCTTAGCTTCGAAACACACTTTGAACCACTC
15112442 GA
261 GA
15112444 T
1 T
15112445 TTTGAGTTTA
Statistics
Matches: 263, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
262 263 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (262 bp):
TGGGAATGGAATATTGGATAAATTAGTTGAAATGTGATAGATGGACATTGTTTAGGGTGTTACAA
AATGAAACATTGATACATTCACAGATGGGATGAAATTTATTAAATTTCATTCACCGAAGCTGTCA
ATTTTCAAGTTCAAGAAATCATTAGAATTGCGACATCTTTTTGGATGGGATCCAGGAATTTCTTG
GTTAAGATATCTTCATGGTGGTTGAAGATCCATCTCTTAGCTTCGAAACACACTTTGAACCACTC
GA
Found at i:15112728 original size:18 final size:18
Alignment explanation
Indices: 15112705--15112751 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
15112695 TTTAGATTAA
15112705 TTAGAGTTTTAGTACACT
1 TTAGAGTTTTAGTACACT
*
15112723 TTAGAGTTTTAGTATACT
1 TTAGAGTTTTAGTACACT
15112741 TTAGAGTTTTA
1 TTAGAGTTTTA
15112752 TTTGGGAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.49
Consensus pattern (18 bp):
TTAGAGTTTTAGTACACT
Found at i:15120483 original size:29 final size:28
Alignment explanation
Indices: 15120441--15120500 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
15120431 CTGGCCTGTC
15120441 AATGGCCGGCACCACCAGTACGAAAAAAA
1 AATGGCCGGCACCACCA-TACGAAAAAAA
** *
15120470 AATGGCCGGCACCAGTATATGAAAAAAA
1 AATGGCCGGCACCACCATACGAAAAAAA
15120498 AAT
1 AAT
15120501 TTTGGGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.12
Consensus pattern (28 bp):
AATGGCCGGCACCACCATACGAAAAAAA
Done.