Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 57 of 172
Found at i:15467512 original size:43 final size:44
Alignment explanation
Indices: 15467414--15467518 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
15467404 GAAGAATTTC
* ** ** *
15467414 AGATCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCCTATCTCCCTGAAATTACAGCAGAGCAGATTGAAGACAG
* *
15467458 AGATCTTATCTCCCTGAAATTACAGCAGAGCAGATTGAAGACACT
1 AGATCCTATCTCCCTGAAATTACAGCAGAGCAGATTGAAGACA-G
15467503 A-A-CCTATCTCCCTGAA
1 AGATCCTATCTCCCTGAA
15467519 GTTAGAATGG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 13 0.25
44 39 0.74
45 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
AGATCCTATCTCCCTGAAATTACAGCAGAGCAGATTGAAGACAG
Found at i:15467783 original size:218 final size:217
Alignment explanation
Indices: 15467244--15467813 Score: 693
Period size: 218 Copynumber: 2.6 Consensus size: 217
15467234 TCGCATCAAC
** *
15467244 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAAAATCCTATCTCCCTGAAGTTGTAGT
* * *
15467309 GGAGTAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGCCT
66 GGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGGACT
* * *
15467374 TATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
131 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAAGTCACAG
* * *
15467439 TGGAGCAGATTGAAGCCAGAGA
196 TGGAGCAGATCGAAGACACAGA
* * *
15467461 TCTTATCTCCCTGAAATTACAGCAGAGCAGATTGAAGACACTAA-CCTATCTCCCTGAAGTTAG-
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CA-AAATCCTATCTCCCTGAAGTT-GT
* * * *
15467524 AATGGAGTGGATTAAAATAAAAGATTTTATCTCTTTGAAGTTACAATAGAGTAGATCGCATTAGG
63 AGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGG
* *
15467589 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTTAGATCTTATCTCCCT-AAG-CA
128 ACTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAAGTCA
* * *
15467652 GTAGTGGAGCAGATCGAGGATACCA-A
193 -CAGTGGAGCAGATCGAAGACA-CAGA
* * * *
15467678 TCTTATTTCCCTGAGATTACAGCGGAGCAGATAGAAGCCAGAAATCTTATTTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CA-AAATCCTATCTCCCTGAAGTTGTA
* * * ** * * * * *
15467743 GTGGAGCGGATCAAAATGATGGATCTCATCCCTCTGAAGTTGCAGTAGAGCAGATCTCATTA-GA
64 GTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGGA
15467807 CTTATCT
129 CTTATCT
15467814 TTAAAAGTTG
Statistics
Matches: 300, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
216 1 0.00
217 100 0.33
218 198 0.66
219 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (217 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAAAATCCTATCTCCCTGAAGTTGTAGT
GGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGGACT
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAAGTCACAG
TGGAGCAGATCGAAGACACAGA
Found at i:15473437 original size:19 final size:18
Alignment explanation
Indices: 15473392--15473427 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15473382 GCCGTGTGAC
15473392 CTTATTTTCCAAAATTTT
1 CTTATTTTCCAAAATTTT
15473410 CTTATTTTCCAAAATTTT
1 CTTATTTTCCAAAATTTT
15473428 TATACTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.56
Consensus pattern (18 bp):
CTTATTTTCCAAAATTTT
Found at i:15487109 original size:19 final size:19
Alignment explanation
Indices: 15487082--15487121 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15487072 CAGTCATAAA
15487082 AATTGATTTAAACTTAT-AT
1 AATTGATTTAAA-TTATGAT
*
15487101 AATTTATTTAAATTATGAT
1 AATTGATTTAAATTATGAT
15487120 AA
1 AA
15487122 GCTACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
AATTGATTTAAATTATGAT
Found at i:15487591 original size:10 final size:10
Alignment explanation
Indices: 15487576--15487600 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15487566 TGAAAATTTG
15487576 AATATAAGAT
1 AATATAAGAT
15487586 AATATAAGAT
1 AATATAAGAT
15487596 AATAT
1 AATAT
15487601 TAAAATGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (10 bp):
AATATAAGAT
Found at i:15487773 original size:18 final size:17
Alignment explanation
Indices: 15487750--15487783 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
15487740 TTATATTATT
15487750 AATTTTCAATGAATTTAA
1 AATTTTCAATG-ATTTAA
15487768 AATTTTCAATGATTTA
1 AATTTTCAATGATTTA
15487784 TCAAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (17 bp):
AATTTTCAATGATTTAA
Found at i:15496316 original size:22 final size:22
Alignment explanation
Indices: 15496291--15496412 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
15496281 TTCCACATCC
15496291 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
15496313 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
15496337 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
15496360 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
15496384 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
15496407 ATCACA
1 ATCACA
15496413 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:15496326 original size:47 final size:47
Alignment explanation
Indices: 15496263--15496470 Score: 294
Period size: 47 Copynumber: 4.4 Consensus size: 47
15496253 CCCTTCGGGT
* * * *
15496263 CTTATCATATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
15496310 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
15496357 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
15496404 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
15496451 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
15496471 GTACATCAAT
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 143 0.99
48 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:15499907 original size:40 final size:40
Alignment explanation
Indices: 15499859--15500138 Score: 416
Period size: 40 Copynumber: 7.0 Consensus size: 40
15499849 GCCCGAATAC
* * *
15499859 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
* * * ** *
15499899 ATAACACCAGCATGAATGCTCTTCGGGGTTTAGCACGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
15499939 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCTCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
* *
15499979 ACATCACTAGCATGAATTCTCTTCAGGACTTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
15500019 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
15500059 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
*
15500099 ATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
15500139 CATTGTCGAG
Statistics
Matches: 217, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:15500265 original size:38 final size:38
Alignment explanation
Indices: 15500196--15500270 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
15500186 GAATTTTAAT
*
15500196 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
15500234 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
15500271 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:15501079 original size:40 final size:40
Alignment explanation
Indices: 15501028--15501115 Score: 176
Period size: 40 Copynumber: 2.2 Consensus size: 40
15501018 CATAATATTG
15501028 ATATACATTAACATCTTAAGCTAAGTAGTAATTAGTATAT
1 ATATACATTAACATCTTAAGCTAAGTAGTAATTAGTATAT
15501068 ATATACATTAACATCTTAAGCTAAGTAGTAATTAGTATAT
1 ATATACATTAACATCTTAAGCTAAGTAGTAATTAGTATAT
15501108 ATATACAT
1 ATATACAT
15501116 CACATTAACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (40 bp):
ATATACATTAACATCTTAAGCTAAGTAGTAATTAGTATAT
Found at i:15502274 original size:51 final size:50
Alignment explanation
Indices: 15502144--15502285 Score: 155
Period size: 50 Copynumber: 2.8 Consensus size: 50
15502134 ATTATTATCA
* * *
15502144 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGATATACGTAGTAGCCTTCACTTAGTACTACACACGTGACCAAACTT
* * * *
15502194 TCCGAT-TCACGTAGTAG-CTTCAATATAGTACTACACATGTGACCATTA-TT
1 TTCGATAT-ACGTAGTAGCCTTCACT-TAGTACTACACACGTGACCA-AACTT
*
15502244 TATCGATATACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 T-TCGATATACGTAGTAGCCTTCACTTAGTACTACACACGTG
15502286 TTTATAGGCA
Statistics
Matches: 75, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
49 5 0.07
50 35 0.47
51 29 0.39
52 6 0.08
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (50 bp):
TTCGATATACGTAGTAGCCTTCACTTAGTACTACACACGTGACCAAACTT
Found at i:15509854 original size:50 final size:51
Alignment explanation
Indices: 15509791--15509978 Score: 168
Period size: 51 Copynumber: 3.7 Consensus size: 51
15509781 TATCATTCAA
* * * **
15509791 TACATGTAGTAGCCTTCACATAGTACTACACACGTGA-TCAAA-CTTTTTGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACT-AAAGCCTTCCGG
* *
15509841 TTCACGTAGTAGCCTACACATAGTACTACACACTTGACTAAAGCCTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACTAAAGCCTTCCGG
* * * * * * *
15509892 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TCTAT-CGA
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACTA-AAGCCT-TCCGG
* * *
15509943 TACATGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTG
15509979 TTTATAGGCA
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
50 36 0.32
51 76 0.67
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (51 bp):
TACACGTAGTAGCCTACACATAGTACTACACACGTGACTAAAGCCTTCCGG
Found at i:15520389 original size:61 final size:61
Alignment explanation
Indices: 15520318--15520643 Score: 318
Period size: 61 Copynumber: 5.4 Consensus size: 61
15520308 AGAGGTTACA
* * * * * *
15520318 ACAAAGGCTTTCTTGTCTTGATTTTTGCCACAAAGATTGTCCTTTACATTTAGTACTCGCT
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGACTGTCCTTTACATTCAGTACTCGCC
* * *
15520379 ACAAAGGCTTTCATGTCTAGAGTTGTGCCATAAAGACTGTCCTTTACATTCAGTACTCACC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGACTGTCCTTTACATTCAGTACTCGCC
* * * *
15520440 ATAAAGTCTTTCTTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTCAGTACTCGCC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGACTGTCCTTTACATTCAGTACTCGCC
* * * * * * * *
15520501 ACAAAGGTTTTCCTGTCAAAAGTTGTGCCA-AAAGGGCTATCATTTATA-TCTAGTACTCGCC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAA-GACTGTCCTTTACATTC-AGTACTCGCC
* * * * * * * *
15520562 ACAAAGGCTTTCCTATCTAGATTTGTGCCACAAATG-CT-TCCTTTATATCCAATACTCACT
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAA-GACTGTCCTTTACATTCAGTACTCGCC
* *
15520622 GCAAAGGCTTTCTTGTCCAGAG
1 ACAAAGGCTTTCTTGTCTAGAG
15520644 CTGTACCATA
Statistics
Matches: 219, Mismatches: 42, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
60 37 0.17
61 178 0.81
62 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (61 bp):
ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGACTGTCCTTTACATTCAGTACTCGCC
Found at i:15520556 original size:122 final size:122
Alignment explanation
Indices: 15520318--15520678 Score: 395
Period size: 122 Copynumber: 3.0 Consensus size: 122
15520308 AGAGGTTACA
* * ** *
15520318 ACAAAGGCTTTCTTGTCTTGATTTTTGCCACAAAGATTGTCCTTTACATTTAGTACTCGCTACAA
1 ACAAAGGCTTTCTTGTCTAGATTTGTGCCACAAAGGCTGTCCTTTACATTCAGTACTCGCTACAA
* * * *
15520383 AGGCTTTCATGTCTAGAGTTGTGCCATAAAGACTGTCCTTTACAT-TCAGTACTCACC
66 AGGCTTTCATGTCAAGAGTTGTGCCATAAAGGCTATCCTTTATATCT-AGTACTCACC
* * * * *
15520440 ATAAAGTCTTTCTTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTCAGTACTCGCCACAA
1 ACAAAGGCTTTCTTGTCTAGATTTGTGCCACAAAGGCTGTCCTTTACATTCAGTACTCGCTACAA
* * * * *
15520505 AGGTTTTCCTGTCAAAAGTTGTGCCA-AAAGGGCTATCATTTATATCTAGTACTCGCC
66 AGGCTTTCATGTCAAGAGTTGTGCCATAAA-GGCTATCCTTTATATCTAGTACTCACC
* * * * * * * *
15520562 ACAAAGGCTTTCCTATCTAGATTTGTGCCACAAATGCT-TCCTTTATATCCAATACTCACTGCAA
1 ACAAAGGCTTTCTTGTCTAGATTTGTGCCACAAAGGCTGTCCTTTACATTCAGTACTCGCTACAA
* * * * *
15520626 AGGCTTTCTTGTCCAGAGCTGTACCATAAAGGTTATCCTTTATATCTAGTACT
66 AGGCTTTCATGTCAAGAGTTGTGCCATAAAGGCTATCCTTTATATCTAGTACT
15520679 TGTTGGATCA
Statistics
Matches: 196, Mismatches: 40, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
121 64 0.33
122 131 0.67
123 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.35
Consensus pattern (122 bp):
ACAAAGGCTTTCTTGTCTAGATTTGTGCCACAAAGGCTGTCCTTTACATTCAGTACTCGCTACAA
AGGCTTTCATGTCAAGAGTTGTGCCATAAAGGCTATCCTTTATATCTAGTACTCACC
Found at i:15544030 original size:196 final size:196
Alignment explanation
Indices: 15543691--15544277 Score: 1057
Period size: 196 Copynumber: 3.0 Consensus size: 196
15543681 AAACTTCCTT
* *
15543691 TTCATAAATTCACAACATAAGTTATTTAAACACTTACCGTTCATTTCCTTTTCATGCCCGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATGCCCGTTGAA
*
15543756 CCATTTAGAATAACATCGGATACGCGGGAAAGCTCACACGAAGTCTGCTAAACATATAGTCGTAA
66 CCATTTAGAATAACATCGGATACGCGGGAAAGCTCACACGAAGTGTGCTAAACATATAGTCGTAA
15543821 CATTTCCTTTTCCTTTACATCGTTGCTCACTCGAGCTGTGAAATGAGTCTGCTCACACAAGCTAA
131 CATTTCCTTTTCCTTTACATCGTTGCTCACTCGAGCTGTGAAATGAGTCTGCTCACACAAGCTAA
15543886 A
196 A
15543887 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATGCCCGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATGCCCGTTGAA
15543952 CCATTTAGAATAACATCGGATACGCGGGAAAGCTCACACGAAGTGTGCTAAACATATAGTCGTAA
66 CCATTTAGAATAACATCGGATACGCGGGAAAGCTCACACGAAGTGTGCTAAACATATAGTCGTAA
*
15544017 CATTTCCTTTTCCTTTACATCGTTGCTCACTCGAGCTGCGAAATGAGTCTGCTCACACAAGCTAA
131 CATTTCCTTTTCCTTTACATCGTTGCTCACTCGAGCTGTGAAATGAGTCTGCTCACACAAGCTAA
15544082 A
196 A
* *
15544083 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCTTTTTCATACCCGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATGCCCGTTGAA
* * *
15544148 CCATTTAGAATAACATCAGATACGCGGGAAAGATCACACGAAGTGTGCTAAACATATAGTTGTAA
66 CCATTTAGAATAACATCGGATACGCGGGAAAGCTCACACGAAGTGTGCTAAACATATAGTCGTAA
* * * *
15544213 CATTTCCTTTTCCTTTACATCATTGCTCACTTGAGCTATGAAATGAGTCTGCTTACACAAGCTAA
131 CATTTCCTTTTCCTTTACATCGTTGCTCACTCGAGCTGTGAAATGAGTCTGCTCACACAAGCTAA
15544278 CTGTAACACC
Statistics
Matches: 377, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
196 377 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (196 bp):
TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATGCCCGTTGAA
CCATTTAGAATAACATCGGATACGCGGGAAAGCTCACACGAAGTGTGCTAAACATATAGTCGTAA
CATTTCCTTTTCCTTTACATCGTTGCTCACTCGAGCTGTGAAATGAGTCTGCTCACACAAGCTAA
A
Found at i:15545431 original size:50 final size:50
Alignment explanation
Indices: 15545370--15545476 Score: 151
Period size: 50 Copynumber: 2.1 Consensus size: 50
15545360 ACATGAAAGT
** * *
15545370 TCTCATATCGGTGTCTATGCCATGTCCCAGACATAGTCTTACGGGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
* * *
15545420 TCTCATCTCGGTACCAACGCCATGTCCCAGACATGGTCTTACGTGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
15545470 TCTCATA
1 TCTCATA
15545477 ACCGCAATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
Found at i:15548206 original size:40 final size:38
Alignment explanation
Indices: 15548122--15548344 Score: 218
Period size: 39 Copynumber: 5.7 Consensus size: 38
15548112 TCGAATGATG
* * *
15548122 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-A
* *
15548162 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
*
15548201 TTCCGGGCTAAGCCCGAAGGCA-TTGATGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTG-TGCGAGTTACT-AA
*
15548241 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTAA
* *
15548280 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TAGTTACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-A
* * *
15548319 ACTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
15548345 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
38 11 0.07
39 82 0.52
40 55 0.35
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:15548260 original size:79 final size:79
Alignment explanation
Indices: 15548122--15548303 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 79
15548112 TCGAATGATG
* *
15548122 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
15548187 GTGCGAGATACTAA
66 GTGCGAGATACTAA
* * * **
15548201 TTCCGGGCTAAG-CCCGAAGGCATTGATGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTG-TGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCA
*
15548263 TTTGTGCGAGTTACTAA
63 TTTGTGCGAGATACTAA
*
15548280 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
15548304 TGTGTAGTTA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 13 0.14
79 63 0.70
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:15554186 original size:56 final size:56
Alignment explanation
Indices: 15554121--15554294 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
15554111 ACAAGGGATG
15554121 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
15554177 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAATAAAATAAG-AGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
15554231 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
15554287 ATGGGCAA
1 ATGGGCAA
15554295 TAAACTAATA
Statistics
Matches: 115, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
54 41 0.36
55 25 0.22
56 49 0.43
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:15555649 original size:39 final size:39
Alignment explanation
Indices: 15555421--15555642 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 39
15555411 TCGAATGATG
* * * *
15555421 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15555460 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
15555500 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
15555538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
15555578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
15555619 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
15555643 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 25 0.15
39 41 0.25
40 88 0.54
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15555672 original size:39 final size:40
Alignment explanation
Indices: 15555473--15555675 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
15555463 GGACTAAGAT
* * * *
15555473 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATC
*
15555512 CCGAAGGCA-TTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATC
*
15555551 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATC
* **
15555591 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGT-
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAATC
** * *
15555630 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAATC
15555669 CCGAAGG
1 CCGAAGG
15555676 TACGTGATTT
Statistics
Matches: 145, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
38 30 0.21
39 49 0.34
40 64 0.44
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATC
Found at i:15557506 original size:18 final size:17
Alignment explanation
Indices: 15557485--15557522 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
15557475 TTTGGTTGGG
15557485 GTGGAAGTTTTTTTTTTT
1 GTGG-AGTTTTTTTTTTT
*
15557503 GTGGTGTTTTTTTTTTT
1 GTGGAGTTTTTTTTTTT
15557520 GTG
1 GTG
15557523 TGGCTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.05, C:0.00, G:0.26, T:0.68
Consensus pattern (17 bp):
GTGGAGTTTTTTTTTTT
Found at i:15558951 original size:37 final size:37
Alignment explanation
Indices: 15558901--15558979 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
15558891 TTATTACGAA
* * *
15558901 GTCTTACCCGGACATAATCTCCACACAAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
**
15558938 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
15558975 GTCTT
1 GTCTT
15558980 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
Found at i:15559174 original size:47 final size:47
Alignment explanation
Indices: 15559098--15559501 Score: 568
Period size: 47 Copynumber: 8.6 Consensus size: 47
15559088 CTTCGGGACT
* * * * * * *
15559098 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
*
15559145 TGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
15559192 TATCACATATATATCACTTTCACATTCATCACATC-GCCATTAGGCCC
1 TATCACATATATAT-ACTTTCACATTCATCACATCGGCCATTAGGCCC
*
15559239 TATCACTTATATATACACTTTCACATTC--CACATCGGCCATTAGG-CC
1 TATCAC--ATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
15559285 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
*
15559332 TATCAC-TATATATACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
15559378 TATC-CATAATATAACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACAT-ATAT-ATACTTTCACATTCATCACATCGGCCATTAGGCCC
15559426 TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
15559473 TATCACATATATATACACTTTCACATTCA
1 TATCACATATATAT--ACTTTCACATTCA
15559502 ATAGCTTATG
Statistics
Matches: 328, Mismatches: 16, Indels: 24
0.89 0.04 0.07
Matches are distributed among these distances:
44 19 0.06
45 1 0.00
46 74 0.23
47 137 0.42
48 74 0.23
49 23 0.07
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:15563295 original size:41 final size:41
Alignment explanation
Indices: 15563250--15563407 Score: 150
Period size: 41 Copynumber: 4.0 Consensus size: 41
15563240 GAATACACGT
* * *
15563250 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA-AA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGA-ATACAA
* *
15563291 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGG-ATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAATACAA
* *
15563331 CACTAGCACGAATGCTCTTC-GGACTTAGCCCGG-ATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAATACAA
* * *
15563370 CACTACTGTATGAATGCTCTT--GGACTTAG-CCGGAATAC
1 CAC--CAGCACGAATGCTCTTCGGGACTTAGCCCGGAATAC
15563408 TCGCACCAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 28 0.27
40 32 0.31
41 42 0.41
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAATACAA
Found at i:15563350 original size:40 final size:39
Alignment explanation
Indices: 15563262--15563437 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
15563252 CCAGCATGAT
* * *
15563262 TGCTCTTCGGGACCTAGCCCGGACATA-AACACCAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGG--ATACATCACTAGCACGAA
15563303 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAA
* *
15563343 TGCTCTTCGGACTTAGCCCGGATACATCACTACTGTATGAA
1 TGCTCTTCGGACTTAGCCCGGATACATCACTA--GCACGAA
* *
15563384 TGCTCTT-GGACTTAG-CCGG--A-AT-ACTCGCACCAA
1 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
*
15563417 TGC-CTTCGGGCTTAGCCCGGA
1 TGCTCTTCGGACTTAGCCCGGA
15563438 ATTAGTATCT
Statistics
Matches: 118, Mismatches: 10, Indels: 20
0.80 0.07 0.14
Matches are distributed among these distances:
32 3 0.03
33 14 0.12
34 4 0.03
35 3 0.03
36 2 0.02
37 1 0.01
39 29 0.25
40 32 0.27
41 30 0.25
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:15563858 original size:28 final size:28
Alignment explanation
Indices: 15563815--15563891 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 28
15563805 CTTAATAATC
* *
15563815 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCA-TTCA
*
15563845 AACTCGCACA-TTAGTGCCATGCATTCA
1 AACCCGCACACTTAGTGCCATGCATTCA
*
15563872 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
15563892 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 11 0.27
28 21 0.51
29 6 0.15
30 3 0.07
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCCATGCATTCA
Found at i:15563934 original size:43 final size:43
Alignment explanation
Indices: 15563873--15563975 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
15563863 ATGCATTCAA
15563873 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
15563916 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
15563959 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
15563976 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:15565768 original size:36 final size:37
Alignment explanation
Indices: 15565696--15565773 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
15565686 TTATTACGAA
* *
15565696 GTCTTACCCGACATAATCTCCAACACGAAGTTATCGG
1 GTCTTACCCGACAAAATCTCCAACACGAAGTCATCGG
* *
15565733 GTCTTACCCGACAAAATC-CCCACACGTAGTCATCGG
1 GTCTTACCCGACAAAATCTCCAACACGAAGTCATCGG
15565769 GTCTT
1 GTCTT
15565774 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 20 0.54
37 17 0.46
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGACAAAATCTCCAACACGAAGTCATCGG
Found at i:15565992 original size:47 final size:47
Alignment explanation
Indices: 15565890--15566833 Score: 1525
Period size: 47 Copynumber: 20.1 Consensus size: 47
15565880 GCCCTTCGGA
* * * * * *
15565890 CTTATCAC-TTTATACACTTTCACATCCATCACGT-TGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15565935 C-TGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15565981 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566030 C-TATCACTTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566078 CTTATCACGTATATACACTTTCACATTCAT--CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566123 CTTATCACATTATATATACTTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-TATATACAC-TTTCACATTCATCACATCGGCCATTAGGC
15566172 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566217 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566264 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566357 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566404 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566500 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566547 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566594 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566643 CTTATCACATATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
15566692 CTTATCATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566739 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15566786 CTTATCACATATATACACTTTCAC-GT--TCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15566830 CTTA
1 CTTA
15566834 CTATCATTTC
Statistics
Matches: 854, Mismatches: 28, Indels: 35
0.93 0.03 0.04
Matches are distributed among these distances:
44 27 0.03
45 83 0.10
46 71 0.08
47 419 0.49
48 47 0.06
49 207 0.24
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15566181 original size:22 final size:22
Alignment explanation
Indices: 15566153--15566226 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
15566143 TTTCACATTC
15566153 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
15566175 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
15566197 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
15566220 ATCACAT
1 ATCACAT
15566227 ATATACACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:15566498 original size:143 final size:143
Alignment explanation
Indices: 15565890--15566833 Score: 1530
Period size: 143 Copynumber: 6.7 Consensus size: 143
15565880 GCCCTTCGGA
* * * * * * * *
15565890 CTTATCAC-TTTATACACTTTCACATCCATCACGT-TGCCACTCGGCC-TGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
15565952 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
15566017 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
15566030 C-TATCACTTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
15566094 ACTTTCACATTCAT--CATCGGCCATTAGGCCTTATCACATTATATATAC-TTTTCACATTCATC
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATATACACTTTCACATTCATC
15566156 ACATCGGCCATTAGGC
128 ACATCGGCCATTAGGC
15566172 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
15566235 TTTCACATTCATCACATCGGCCATTAGGCC-TATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
15566297 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
15566310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
15566375 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
15566440 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
15566453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
15566518 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
15566581 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
15566594 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
15566659 ACACTTTTACATTCATCACATCGGCCATTAGGCCTTAT--CATGTATATACACTTTCACATTCAT
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
15566722 CACATCGGCCATTAGGC
127 CACATCGGCCATTAGGC
*
15566739 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
15566804 TTTCAC-GT--TCACATCGGCCATTAGGCCTTA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTA
15566834 CTATCATTTC
Statistics
Matches: 759, Mismatches: 24, Indels: 44
0.92 0.03 0.05
Matches are distributed among these distances:
137 8 0.01
138 59 0.08
139 72 0.09
140 92 0.12
141 83 0.11
142 76 0.10
143 258 0.34
144 25 0.03
145 86 0.11
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:15594354 original size:21 final size:21
Alignment explanation
Indices: 15594330--15594370 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15594320 CACCAACTAC
* *
15594330 CTCTTCTGCAGCATCAACTTG
1 CTCTTATGCAGCAGCAACTTG
*
15594351 CTCTTATGCAGTAGCAACTT
1 CTCTTATGCAGCAGCAACTT
15594371 CCTTCTCCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (21 bp):
CTCTTATGCAGCAGCAACTTG
Found at i:15597057 original size:25 final size:25
Alignment explanation
Indices: 15597029--15597219 Score: 94
Period size: 25 Copynumber: 7.6 Consensus size: 25
15597019 CTTATAAGTG
15597029 TCCCGA-TATATGGCTCTTCAGAGCT
1 TCCCGATTA-ATGGCTCTTCAGAGCT
*
15597054 TCCCGATTAAAGGCTCTTTCATGAGCT
1 TCCCGATTAATGGCTC-TTCA-GAGCT
* *
15597081 TCCCAATTAATTGGCTC-TCTAGGGCT
1 TCCCGATTAA-TGGCTCTTC-AGAGCT
* * * *
15597107 TCCCTA-TATTGGCTCACTTGA-ACCT
1 TCCCGATTAATGGCT--CTTCAGAGCT
* * * *
15597132 TACCGA-TATTGGCTCGTAAGAGCT
1 TCCCGATTAATGGCTCTTCAGAGCT
* *
15597156 TCCC-ATTAATGTCTCTTCGGAGCT
1 TCCCGATTAATGGCTCTTCAGAGCT
* *
15597180 T-CCTATTACATGGCTC-ACATGAGCT
1 TCCCGATTA-ATGGCTCTTCA-GAGCT
15597205 TCCC-ATTATATGGCT
1 TCCCGATTA-ATGGCT
15597220 TGAAAGAGCT
Statistics
Matches: 128, Mismatches: 24, Indels: 28
0.71 0.13 0.16
Matches are distributed among these distances:
23 6 0.05
24 30 0.23
25 50 0.39
26 21 0.16
27 16 0.12
28 5 0.04
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTCAGAGCT
Found at i:15597089 original size:27 final size:25
Alignment explanation
Indices: 15597040--15597090 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
15597030 CCCGATATAT
*
15597040 GGCTCTTCAGAGCTTCCCGATTAAA
1 GGCTCTTCAGAGCTTCCCAATTAAA
15597065 GGCTCTTTCATGAGCTTCCCAATTAA
1 GGCTC-TTCA-GAGCTTCCCAATTAA
15597091 TTGGCTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 4 0.17
27 14 0.61
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (25 bp):
GGCTCTTCAGAGCTTCCCAATTAAA
Found at i:15604291 original size:28 final size:30
Alignment explanation
Indices: 15604254--15604322 Score: 108
Period size: 28 Copynumber: 2.4 Consensus size: 30
15604244 TATCGAATTA
15604254 TGAAAAGGGATGGTGACGA-CATCA-ATGAG
1 TGAAAAGGGATGGTGACGAGCATCAGA-GAG
15604283 -GAAAAGGGATGGTGACGAGCATCAGAGAG
1 TGAAAAGGGATGGTGACGAGCATCAGAGAG
15604312 TGAAAAGGGAT
1 TGAAAAGGGAT
15604323 AGCTTTGGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
28 18 0.49
29 8 0.22
30 11 0.30
ACGTcount: A:0.39, C:0.09, G:0.38, T:0.14
Consensus pattern (30 bp):
TGAAAAGGGATGGTGACGAGCATCAGAGAG
Found at i:15604397 original size:30 final size:30
Alignment explanation
Indices: 15604249--15604412 Score: 115
Period size: 30 Copynumber: 5.5 Consensus size: 30
15604239 TCGGTTATCG
15604249 AATTATGAAAAGGGATGGTGACGA-CATC-
1 AATTATGAAAAGGGATGGTGACGACCATCA
* * *
15604277 AATGAGGAAAAGGGATGGTGACGAGCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
* * * ** * **
15604307 GA-GAGTGAAAAGGGATAGCT-TTGGCTGTCA
1 AATTA-TGAAAAGGGAT-GGTGACGACCATCA
* * *
15604337 AATTATGAAAAGGGATAGCT-TC-AGCTATCA
1 AATTATGAAAAGGGAT-GGTGACGA-CCATCA
15604367 AATTATGAAAAGGGATGGTGACGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
*
15604397 AATAATGAAAAGGGAT
1 AATTATGAAAAGGGAT
15604413 AGTTTTGGCT
Statistics
Matches: 108, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
28 22 0.20
29 8 0.07
30 74 0.69
31 4 0.04
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACGACCATCA
Found at i:15604455 original size:90 final size:90
Alignment explanation
Indices: 15604283--15604447 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 90
15604273 CATCAATGAG
* * * * **
15604283 GAAAAGGGATGGTGACGAGCATCAGAGAGTGAAAAGGGATAGCTTTGGCTGTCAAATTATGAAAA
1 GAAAAGGGATGGTGACGACCATCAAAGAATGAAAAGGGATAGCTTTGGCTATCAAACAATGAAAA
15604348 GGGATAGCTTCAGCTATCAAATTAT
66 GGGATAGCTTCAGCTATCAAATTAT
* * ****
15604373 GAAAAGGGATGGTGACGACCATCAAATAATGAAAAGGGATAGTTTTGGCTATTGGGCAATGAAAA
1 GAAAAGGGATGGTGACGACCATCAAAGAATGAAAAGGGATAGCTTTGGCTATCAAACAATGAAAA
15604438 GGGATAGCTT
66 GGGATAGCTT
15604448 TGGCTATCGA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 63 1.00
ACGTcount: A:0.37, C:0.10, G:0.30, T:0.23
Consensus pattern (90 bp):
GAAAAGGGATGGTGACGACCATCAAAGAATGAAAAGGGATAGCTTTGGCTATCAAACAATGAAAA
GGGATAGCTTCAGCTATCAAATTAT
Found at i:15604464 original size:90 final size:90
Alignment explanation
Indices: 15604283--15604485 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 90
15604273 CATCAATGAG
* * * * **
15604283 GAAAAGGGATGGTGACGAGCATCAGAGAGTGAAAAGGGATAGCTTTGGCTGTCAAATTATGAAAA
1 GAAAAGGGATGGTGACGACCATCAAAGAATGAAAAGGGATAGCTTTGGCTATCAAACAATGAAAA
*
15604348 GGGATAGCTTCAGCTATCAAATTAT
66 GGGATAGCTTCAGCTATCAAACTAT
* * ****
15604373 GAAAAGGGATGGTGACGACCATCAAATAATGAAAAGGGATAGTTTTGGCTATTGGGCAATGAAAA
1 GAAAAGGGATGGTGACGACCATCAAAGAATGAAAAGGGATAGCTTTGGCTATCAAACAATGAAAA
** * *
15604438 GGGATAGCTTTGGCTATCGAGCTAT
66 GGGATAGCTTCAGCTATCAAACTAT
* *
15604463 GAAAAAGGGTTGG-GACAACCATC
1 G-AAAAGGGATGGTGACGACCATC
15604486 GTGATTTTAC
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
90 83 0.89
91 10 0.11
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.23
Consensus pattern (90 bp):
GAAAAGGGATGGTGACGACCATCAAAGAATGAAAAGGGATAGCTTTGGCTATCAAACAATGAAAA
GGGATAGCTTCAGCTATCAAACTAT
Found at i:15604465 original size:30 final size:30
Alignment explanation
Indices: 15604312--15604467 Score: 118
Period size: 30 Copynumber: 5.2 Consensus size: 30
15604302 CATCAGAGAG
* *
15604312 TGAAAAGGGATAGCTTTGGCTGTCAAATTA
1 TGAAAAGGGATAGCTTTGGCTATCAAACTA
** *
15604342 TGAAAAGGGATAGCTTCAGCTATCAAATTA
1 TGAAAAGGGATAGCTTTGGCTATCAAACTA
* ** * *
15604372 TGAAAAGGGAT-GGTGACGACCATCAAA-TAA
1 TGAAAAGGGATAGCT-TTGGCTATCAAACT-A
* **** *
15604402 TGAAAAGGGATAGTTTTGGCTATTGGGCAA
1 TGAAAAGGGATAGCTTTGGCTATCAAACTA
* *
15604432 TGAAAAGGGATAGCTTTGGCTATCGAGCTA
1 TGAAAAGGGATAGCTTTGGCTATCAAACTA
15604462 TGAAAA
1 TGAAAA
15604468 AGGGTTGGGA
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
29 3 0.03
30 95 0.95
31 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.26
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTTGGCTATCAAACTA
Found at i:15604673 original size:21 final size:22
Alignment explanation
Indices: 15604630--15604673 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
15604620 TCTCATGTTG
*
15604630 GATTGATGCATATGTATTCTAA
1 GATTGATGCATATGTATTATAA
15604652 GATT-ATGCA-ATGTATTGATAA
1 GATTGATGCATATGTATT-ATAA
15604673 G
1 G
15604674 CATAGTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (22 bp):
GATTGATGCATATGTATTATAA
Found at i:15606205 original size:22 final size:22
Alignment explanation
Indices: 15606180--15606223 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15606170 AATTATTAAC
* *
15606180 ATATTGAATTTTAATTACTTTT
1 ATATTAAATTTTAATTAATTTT
*
15606202 ATATTAAATTTTGATTAATTTT
1 ATATTAAATTTTAATTAATTTT
15606224 GATTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATTAAATTTTAATTAATTTT
Found at i:15610025 original size:24 final size:25
Alignment explanation
Indices: 15609962--15610025 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
15609952 TTATCGATTC
* * *
15609962 TCAGCTCGAAAGAGCTTACTGATAT
1 TCAGCTAGTAAGAGCTTACCGATAT
* *
15609987 TCAGCTCGTATGAGCTTACCG-T-T
1 TCAGCTAGTAAGAGCTTACCGATAT
15610010 TACAGCTAGTAAGAGC
1 T-CAGCTAGTAAGAGC
15610026 ATATCGATTC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
23 2 0.06
24 13 0.39
25 18 0.55
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
TCAGCTAGTAAGAGCTTACCGATAT
Found at i:15616191 original size:25 final size:25
Alignment explanation
Indices: 15616122--15616191 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 25
15616112 GCTTACTGAT
15616122 ATTCAGA--TCGTATGAGCT-TACTG
1 ATTCAGAGCTCGTATGAG-TATACTG
* * * * *
15616145 -TTTACAGCTTGTAAGAGCATACTG
1 ATTCAGAGCTCGTATGAGTATACTG
15616169 ATTCAGAGCTCGTATGAGTATAC
1 ATTCAGAGCTCGTATGAGTATAC
15616192 CTGTAGAGGA
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
22 4 0.12
24 12 0.36
25 17 0.52
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (25 bp):
ATTCAGAGCTCGTATGAGTATACTG
Found at i:15619567 original size:24 final size:24
Alignment explanation
Indices: 15619535--15619595 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
15619525 ATCCCTAAAA
*
15619535 CAATGAAAAGGTTC-AAAAGGATAT
1 CAATGAAAAGG-TCGAAAAGGATAG
*
15619559 CAATGAAAAGGTCGAAAATGATAG
1 CAATGAAAAGGTCGAAAAGGATAG
15619583 CAATG-AAAGGTCG
1 CAATGAAAAGGTCG
15619596 CTATCTCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.29
24 24 0.71
ACGTcount: A:0.48, C:0.10, G:0.25, T:0.18
Consensus pattern (24 bp):
CAATGAAAAGGTCGAAAAGGATAG
Found at i:15625610 original size:51 final size:48
Alignment explanation
Indices: 15625534--15625635 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 48
15625524 AAACATGGTA
* *
15625534 GTTATAATTTTTTTGGAAAGAATATAACATGTTTTTAATACTTTCCATAT
1 GTTATAATTTTTTTAGAAAGAATATAAC--GTGTTTAATACTTTCCATAT
* * *
15625584 GTTATAATTCTTTTTAGAAAGGATATAACGTGTTTAATTCTTTCCTTAT
1 GTTATAATT-TTTTTAGAAAGAATATAACGTGTTTAATACTTTCCATAT
15625633 GTT
1 GTT
15625636 CTCTATAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
49 20 0.43
50 9 0.20
51 17 0.37
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.49
Consensus pattern (48 bp):
GTTATAATTTTTTTAGAAAGAATATAACGTGTTTAATACTTTCCATAT
Found at i:15632578 original size:50 final size:49
Alignment explanation
Indices: 15632502--15632603 Score: 132
Period size: 50 Copynumber: 2.1 Consensus size: 49
15632492 AAAAATGGTA
* ** *
15632502 GTTATAATTCATTTTGGAAAGAATATAACGTTTTTTAATACTTTCCATAT
1 GTTATAATTCATTTTGAAAAGAATATAA-AATGTTTAATACTTTCCATAT
* * *
15632552 GTTATAATTCTTTTTGAAAAGTATATAAAATGTTTAATTCTTTCCATAT
1 GTTATAATTCATTTTGAAAAGAATATAAAATGTTTAATACTTTCCATAT
15632601 GTT
1 GTT
15632604 GTCTATAAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
49 20 0.44
50 25 0.56
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (49 bp):
GTTATAATTCATTTTGAAAAGAATATAAAATGTTTAATACTTTCCATAT
Found at i:15638537 original size:15 final size:15
Alignment explanation
Indices: 15638517--15638551 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
15638507 ATAGCTCACA
15638517 CATAATGTACTAACT
1 CATAATGTACTAACT
15638532 CATAATGTACTAACT
1 CATAATGTACTAACT
15638547 -ATAAT
1 CATAAT
15638552 CCATCAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (15 bp):
CATAATGTACTAACT
Found at i:15644097 original size:20 final size:20
Alignment explanation
Indices: 15644062--15644114 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
15644052 GTATCGATCC
*
15644062 AGTATCGATACTTTT-CTGAA
1 AGTATCGATA-TTTTCCTAAA
*
15644082 GGTATCGATATATTTCCTAAA
1 AGTATCGATAT-TTTCCTAAA
15644103 AGTATCGATATT
1 AGTATCGATATT
15644115 CCTGCTCCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 1 0.04
20 13 0.46
21 14 0.50
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (20 bp):
AGTATCGATATTTTCCTAAA
Found at i:15645589 original size:48 final size:48
Alignment explanation
Indices: 15645518--15645721 Score: 246
Period size: 48 Copynumber: 4.2 Consensus size: 48
15645508 TATGCACACT
* * *
15645518 GATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCATC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * *
15645566 GATATTCTGTTATGATACAAGGGTGGCACAGACTATGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * * * *
15645614 AATAACCTGTTAAGATACAAGGGTGGCACGGACTATGTGTAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * * * *
15645662 GAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
*
15645710 GAGAAATCTGTT
1 GA-TAATCTGTT
15645722 TTTATTCTGA
Statistics
Matches: 134, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
48 126 0.94
49 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
Found at i:15650104 original size:36 final size:36
Alignment explanation
Indices: 15650013--15650111 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 36
15650003 TGAGAACCAT
* * * *
15650013 CAAAGGGACTTATCTACAAGCCAATAGATGAATTTA
1 CAAAGGGAATTATCTGCAGGCCAATGGATGAATTTA
* *
15650049 CAAATTGTAATTATCTGCAGGCCAATGGATGAATTTA
1 CAAA-GGGAATTATCTGCAGGCCAATGGATGAATTTA
*
15650086 CAAAGGGAATTATCTGCAGACCAATG
1 CAAAGGGAATTATCTGCAGGCCAATG
15650112 CGAAAAACCA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 23 0.43
37 30 0.57
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (36 bp):
CAAAGGGAATTATCTGCAGGCCAATGGATGAATTTA
Found at i:15655128 original size:45 final size:45
Alignment explanation
Indices: 15655042--15655141 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
15655032 AATAATAACA
* * * *
15655042 GATACTCGATGGATTCAACACATAGCAACCACCTTATTAATCAAT
1 GATATTCGGTGGAATCAACACATAGCAACCACCTTACTAATCAAT
* *
15655087 GATGTTCGGTGGAATCAGCACATAGCAACCACCTTACTAATCAAT
1 GATATTCGGTGGAATCAACACATAGCAACCACCTTACTAATCAAT
15655132 GATATTCGGT
1 GATATTCGGT
15655142 TCACATAGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (45 bp):
GATATTCGGTGGAATCAACACATAGCAACCACCTTACTAATCAAT
Found at i:15655206 original size:51 final size:50
Alignment explanation
Indices: 15655147--15655333 Score: 225
Period size: 51 Copynumber: 3.7 Consensus size: 50
15655137 TCGGTTCACA
** * *
15655147 TAGTAGCCTGTACATAGTACTACACATGTGACCATTATCATCCGATACATG
1 TAGTAGCCTACACATAGTACTACACACGTGACCA-TATCATCCGGTACATG
* * * **
15655198 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AACTATCCGGTACAAA
1 TAGTAGCCTACACATAGTACTACACACGTGA-CCATATC-ATCCGGTACATG
* *
15655249 TAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATG
1 TAGTAGCCTACACATAGTACTACACACGTGACCATATCA-TCCGGTACATG
15655299 TAGTAGCCTACACATAGTACTACACACGTGACCAT
1 TAGTAGCCTACACATAGTACTACACACGTGACCAT
15655334 CACTTTCACT
Statistics
Matches: 115, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 1 0.01
50 45 0.39
51 67 0.58
52 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTACACATAGTACTACACACGTGACCATATCATCCGGTACATG
Found at i:15655322 original size:101 final size:101
Alignment explanation
Indices: 15655146--15655329 Score: 298
Period size: 101 Copynumber: 1.8 Consensus size: 101
15655136 TTCGGTTCAC
** * *
15655146 ATAGTAGCCTGTACATAGTACTACACATGTGACCATTATCATCCGATACATGTAGTAGCCTGCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCA-TATCATCCGATACATGTAGTAGCCTACAC
15655211 ATAGTACTACACACGTGATCGAAACTATCCGGTACAA
65 ATAGTACTACACACGTGATCGAAACTATCCGGTACAA
*
15655248 ATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATGTAGTAGCCTACAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCATATCA-TCCGATACATGTAGTAGCCTACAC
15655312 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
15655330 CCATCACTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
100 5 0.07
101 40 0.53
102 31 0.41
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (101 bp):
ATAGTAGCCTACACATAGTACTACACATGCGACCATATCATCCGATACATGTAGTAGCCTACACA
TAGTACTACACACGTGATCGAAACTATCCGGTACAA
Found at i:15665997 original size:21 final size:21
Alignment explanation
Indices: 15665972--15666015 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
15665962 ATTTTTGAGG
15665972 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
15665993 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
15666014 AT
1 AT
15666016 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:15666021 original size:19 final size:19
Alignment explanation
Indices: 15665971--15666026 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
15665961 AATTTTTGAG
15665971 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15665990 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
15666011 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
15666027 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15666033 original size:22 final size:23
Alignment explanation
Indices: 15665984--15666047 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
15665974 ATGCAATCTT
*
15665984 AGATATGATATATGCAATCTT---
1 AGATATGAT-TATGTAATCTTAGA
15666005 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
15666027 AGATATGATTTTGTAATCTTA
1 AGATATGATTATGTAATCTTA
15666048 TAGATTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
19 10 0.27
21 8 0.22
22 8 0.22
23 11 0.30
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:15667069 original size:9 final size:9
Alignment explanation
Indices: 15667057--15667081 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15667047 GATGATGTAT
15667057 TTATTATTG
1 TTATTATTG
15667066 TTATTATTG
1 TTATTATTG
15667075 TTATTAT
1 TTATTAT
15667082 AGCATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:15667403 original size:99 final size:98
Alignment explanation
Indices: 15667293--15667550 Score: 243
Period size: 98 Copynumber: 2.6 Consensus size: 98
15667283 ATTCAACACG
* * ** * *
15667293 TTGTGTCCTAACGTATTGGATGTGA-CGCATTGATTTCTCGAA-ATGAAGAT-TTTTTTTAAATA
1 TTGTGCCCTAACGTATTGGGTGTGATCGC-TT-AAATCTCGAATAAGAAGATGTTCTTTTAAA-A
* *
15667355 ATAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAA
63 A-AAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAA
* ** * ** *
15667392 TTGTGCCCTAACATATTGGGTGTGATTTCTTAAATCTTGAATAAGTGGATGTTCTTTTAAAGAAA
1 TTGTGCCCTAACGTATTGGGTGTGATCGCTTAAATCTCGAATAAGAAGATGTTCTTTTAAAAAAA
*
15667457 AGGAAATATTCCGAGTTTGAGATTCTAGAGGAA
66 AGGAAATATTCCGAGTTTGAGATTCTAAAGGAA
* ** * * * **
15667490 TCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATATTGGATAAGTGGATGTTCTTTTAAA
1 TTGTGCCCTAACGTATTGGGTGTGATCGCTTAAATCTCGAATAAGAAGATGTTCTTTTAAA
15667551 TTTTTATTGT
Statistics
Matches: 136, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
98 96 0.71
99 30 0.22
100 10 0.07
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (98 bp):
TTGTGCCCTAACGTATTGGGTGTGATCGCTTAAATCTCGAATAAGAAGATGTTCTTTTAAAAAAA
AGGAAATATTCCGAGTTTGAGATTCTAAAGGAA
Found at i:15667470 original size:98 final size:98
Alignment explanation
Indices: 15667357--15667550 Score: 325
Period size: 98 Copynumber: 2.0 Consensus size: 98
15667347 TTTAAATAAT
* * *
15667357 AAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACATATTGGGTGTGATTTCT
1 AAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTCT
*
15667422 TAAATCTTGAATAAGTGGATGTTCTTTTAAAGA
66 TAAATATTGAATAAGTGGATGTTCTTTTAAAGA
* *
15667455 AAAGGAAATATTCCGAGTTTGAGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCT
1 AAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTCT
*
15667520 TAAATATTGGATAAGTGGATGTTCTTTTAAA
66 TAAATATTGAATAAGTGGATGTTCTTTTAAA
15667551 TTTTTATTGT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (98 bp):
AAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTCT
TAAATATTGAATAAGTGGATGTTCTTTTAAAGA
Found at i:15672920 original size:45 final size:45
Alignment explanation
Indices: 15672789--15672920 Score: 110
Period size: 45 Copynumber: 3.0 Consensus size: 45
15672779 TTAGTGAAAG
* * * * * * *
15672789 AGTAGATCTTGTCTTCCTGCATCGACAGCGAAGCAGATCGAAAAC
1 AGTAGATCTTGCCTTCCTGCATTGATAGTGGAGCAGATCGAAGAT
* * * * **
15672834 A-AAG-CCTTGCCTTCCT-CGTTTG-TAGTGGAGCAGGTTAAAGAT
1 AGTAGATCTTGCCTTCCTGC-ATTGATAGTGGAGCAGATCGAAGAT
15672876 AGTAGATCTTGCCTTCCTGCATTGATAGTGGAGCAGATCGAAGAT
1 AGTAGATCTTGCCTTCCTGCATTGATAGTGGAGCAGATCGAAGAT
15672921 GGCGGTTTTA
Statistics
Matches: 63, Mismatches: 19, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
42 14 0.22
43 14 0.22
44 16 0.25
45 19 0.30
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (45 bp):
AGTAGATCTTGCCTTCCTGCATTGATAGTGGAGCAGATCGAAGAT
Found at i:15673082 original size:132 final size:131
Alignment explanation
Indices: 15672901--15673949 Score: 1634
Period size: 132 Copynumber: 8.0 Consensus size: 131
15672891 CCTGCATTGA
*
15672901 TAGTGGAGCAGATCGAAGATGGCGGTTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 TAGTGGAGCAGATCGAAGATGGCGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * * *
15672966 GTAATTCTACTTTCCTGGGCAACAGTGGAATAGGTTGAAGATTTCAGATCTTATCTCCTTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
15673031 G
131 G
15673032 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
1 TAGTGGAGCAGATCGAAGATGGC-GATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
*
15673097 AGTAATTCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
15673162 AG
130 AG
15673164 TAGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
1 TAGTGGAGCAGATCGAAGATGGCG-ATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
* * *
15673229 AGTGATTCTACTTCCCAGGACAACAGTGGAATAGATTGAAGACTTCAGATCTTATCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
15673294 AG
130 AG
**
15673296 TAGTATAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
1 TAGTGGAGCAGATCGAAGATGGC-GATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
* **
15673361 AGTAATTTTACTTCCCTGGGTAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
15673426 AG
130 AG
* *
15673428 TAGTGGAGCAGATCGAAGATGACGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
1 TAGTGGAGCAGATCGAAGATGGCG-ATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
* *
15673493 AATAATTCTACTTCCTTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
15673558 AG
130 AG
* * *
15673560 TAGTGGAGCATATCGGAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCC
1 TAGTGGAGCAGATCGAAGATGGC-GATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
* *
15673625 AGTAATTCTACTTCCCTGAACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
15673690 AG
130 AG
** *
15673692 TAGTGGAATAGATCGAAGATGGCGGATTTTACCTCCCTGTGTTTATAGTGGAGTACATTGAAGCC
1 TAGTGGAGCAGATCGAAGATGGC-GATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
*
15673757 AGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
15673822 AG
130 AG
* * * * * * *
15673824 TAGTGGAGTAGATCGAAGATGGTTGATTTTACCTCCCTCTAGTTACAGTGGAATACATTGAAGTC
1 TAGTGGAGCAGATCGAAGATGG-CGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
* * ** * * *
15673889 AGTAATCCTA-TCTCCCTAGACAGTAGTGGAATAGGTTAAAGATTGTAAG-TCTTATCTCCCT
65 AGTAATTCTACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
15673950 GCAGTTGCAG
Statistics
Matches: 849, Mismatches: 61, Indels: 15
0.92 0.07 0.02
Matches are distributed among these distances:
131 26 0.03
132 818 0.96
133 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (131 bp):
TAGTGGAGCAGATCGAAGATGGCGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
G
Found at i:15673931 original size:88 final size:86
Alignment explanation
Indices: 15673779--15673975 Score: 202
Period size: 88 Copynumber: 2.2 Consensus size: 86
15673769 TCCCTGGGCA
* * *
15673779 ACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGAT
1 ACAGTGGAATAGATTGAAG---TCAGATCCTATCTCCCTAAGCAGTAGTGGAATAGATCAAAGAT
* *
15673844 GGT-TGATTTTACCTCCCT-CTAGTT
63 GGTAAG-TCTTACCTCCCTGC-AGTT
* * *
15673868 ACAGTGGAATACATTGAAGTCAGTAATCCTATCTCCCT-AGACAGTAGTGGAATAGGTTAAAGAT
1 ACAGTGGAATAGATTGAAGTCAG--ATCCTATCTCCCTAAG-CAGTAGTGGAATAGATCAAAGAT
* *
15673932 TGTAAGTCTTATCTCCCTGCAGTT
63 GGTAAGTCTTACCTCCCTGCAGTT
*
15673956 GCAGTGGAATAGATTGAAGT
1 ACAGTGGAATAGATTGAAGT
15673976 ACTACCTCCT
Statistics
Matches: 91, Mismatches: 12, Indels: 11
0.80 0.11 0.10
Matches are distributed among these distances:
86 4 0.04
87 2 0.02
88 65 0.71
89 20 0.22
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (86 bp):
ACAGTGGAATAGATTGAAGTCAGATCCTATCTCCCTAAGCAGTAGTGGAATAGATCAAAGATGGT
AAGTCTTACCTCCCTGCAGTT
Found at i:15674202 original size:19 final size:19
Alignment explanation
Indices: 15674178--15674250 Score: 128
Period size: 19 Copynumber: 3.8 Consensus size: 19
15674168 AATTTTTGAA
15674178 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
15674197 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
15674216 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
15674235 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
15674251 AGATATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15674220 original size:38 final size:36
Alignment explanation
Indices: 15674175--15674257 Score: 130
Period size: 38 Copynumber: 2.2 Consensus size: 36
15674165 CATAATTTTT
15674175 GAAGATATGCAATCTTAGATATGATATGCAATCCTA
1 GAAGATATGCAATCTTAGATATGATATGCAATCCTA
* *
15674211 GATATGATATGCAATCTTAGATATGATATGTAATCTTA
1 GA-A-GATATGCAATCTTAGATATGATATGCAATCCTA
15674249 GAAGATATG
1 GAAGATATG
15674258 ATTTTGTAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 8 0.19
37 2 0.05
38 33 0.77
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.34
Consensus pattern (36 bp):
GAAGATATGCAATCTTAGATATGATATGCAATCCTA
Found at i:15674276 original size:22 final size:22
Alignment explanation
Indices: 15674210--15674273 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 22
15674200 ATGCAATCCT
*
15674210 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTAGA
15674229 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
15674251 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
15674274 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.46
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:15674283 original size:22 final size:23
Alignment explanation
Indices: 15674239--15674283 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15674229 AGATATGATA
*
15674239 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
15674262 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
15674284 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:15675289 original size:9 final size:9
Alignment explanation
Indices: 15675275--15675299 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15675265 GTCGATGTAT
15675275 TTATTATTG
1 TTATTATTG
15675284 TTATTATTG
1 TTATTATTG
15675293 TTATTAT
1 TTATTAT
15675300 AGCATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:15675679 original size:98 final size:98
Alignment explanation
Indices: 15675577--15675771 Score: 300
Period size: 98 Copynumber: 2.0 Consensus size: 98
15675567 TTTAAATAAT
** * * *
15675577 AAAGGAAATATTCTGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCT
1 AAAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGGGTGATTTCT
*
15675642 TAAATCTTGGATAAGTGGAGGTTCTTTTAAAGA
66 TAAATCTTGGATAAGTGAAGGTTCTTTTAAAGA
* *
15675675 AAAGGAAATATTCCAAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGGGTGATTTCT
1 AAAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGGGTGATTTCT
* *
15675740 TAAATCTTGGATAAGTGAATGTTTTTTTAAAG
66 TAAATCTTGGATAAGTGAAGGTTCTTTTAAAG
15675772 TTTTATTGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (98 bp):
AAAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGGGTGATTTCT
TAAATCTTGGATAAGTGAAGGTTCTTTTAAAGA
Found at i:15686720 original size:29 final size:27
Alignment explanation
Indices: 15686654--15686721 Score: 64
Period size: 29 Copynumber: 2.3 Consensus size: 27
15686644 AATTTGATCT
*
15686654 AATTCTAAAAATTTTAAAAATATATAAA
1 AATT-TAAATATTTTAAAAATATATAAA
**
15686682 AGTACATAAATATTTTAAAAATATAATAATA
1 A--ATTTAAATATTTTAAAAATAT-ATAA-A
15686713 AATTTAAAT
1 AATTTAAAT
15686722 TTTATATTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
28 1 0.03
29 23 0.74
30 5 0.16
31 2 0.06
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (27 bp):
AATTTAAATATTTTAAAAATATATAAA
Found at i:15686871 original size:24 final size:24
Alignment explanation
Indices: 15686842--15686887 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
15686832 TACTAATAGT
* *
15686842 TTAAATATTGAATTATATTTTATA
1 TTAAATATTAAATTAAATTTTATA
15686866 TTAAATATTAAATTAAATTTTA
1 TTAAATATTAAATTAAATTTTA
15686888 ATTGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTAAATATTAAATTAAATTTTATA
Found at i:15691091 original size:23 final size:24
Alignment explanation
Indices: 15691058--15691107 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
15691048 AGACAAGCTG
15691058 CCATGTAGGTTGTGGAT-AAACCA
1 CCATGTAGGTTGTGGATGAAACCA
* *
15691081 CCATGTTGGTTGTGGATGAAGCCA
1 CCATGTAGGTTGTGGATGAAACCA
15691105 CCA
1 CCA
15691108 ATTCTTCCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (24 bp):
CCATGTAGGTTGTGGATGAAACCA
Found at i:15694426 original size:50 final size:50
Alignment explanation
Indices: 15694360--15694496 Score: 157
Period size: 50 Copynumber: 2.7 Consensus size: 50
15694350 TTATGAGAGG
* * * *
15694360 TCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCACTGAGATAAGAAG
1 TCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAAC
* * * * * * *
15694410 TCCCCCGTAAGGCCATGTCTGGGACATGACATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAAC
* *
15694460 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCACGTAAGACCATGTCTGGGATATGGCATTGGCA
15694497 GTGCAGGAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAAC
Found at i:15694764 original size:12 final size:12
Alignment explanation
Indices: 15694747--15694774 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15694737 ATGAGTTATT
15694747 TAAGTAAACAAG
1 TAAGTAAACAAG
15694759 TAAGTAAACAAG
1 TAAGTAAACAAG
15694771 TAAG
1 TAAG
15694775 AAAGTAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.18, T:0.18
Consensus pattern (12 bp):
TAAGTAAACAAG
Found at i:15702336 original size:20 final size:20
Alignment explanation
Indices: 15702311--15702359 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
15702301 TGAGTTATTT
15702311 AAGTAAGCAAGTAAGCAAAC
1 AAGTAAGCAAGTAAGCAAAC
* * *
15702331 AAGTAAGAAAGTAAGTAAAG
1 AAGTAAGCAAGTAAGCAAAC
15702351 AAG-AAGCAA
1 AAGTAAGCAA
15702360 AGACCATGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.59, C:0.08, G:0.22, T:0.10
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGCAAAC
Found at i:15703661 original size:29 final size:28
Alignment explanation
Indices: 15703628--15703723 Score: 95
Period size: 29 Copynumber: 3.4 Consensus size: 28
15703618 ATTTAAGGTC
*
15703628 GCCTTTGTGGCAAAACTTTGGAAAGGTAA
1 GCCTTTGTGGCAAAACTCT-GAAAGGTAA
* *** * *
15703657 GCCTTTATGGTGTACCTGTGAAAGGTCAA
1 GCCTTTGTGGCAAAACTCTGAAAGGT-AA
15703686 -CCTTTGTGGCAAAACTCTAGAAAGGTAA
1 GCCTTTGTGGCAAAACTCT-GAAAGGTAA
15703714 GCCTTTGTGG
1 GCCTTTGTGG
15703724 TGAACTTCTT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
28 21 0.40
29 31 0.60
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (28 bp):
GCCTTTGTGGCAAAACTCTGAAAGGTAA
Found at i:15706319 original size:33 final size:33
Alignment explanation
Indices: 15706278--15706390 Score: 145
Period size: 33 Copynumber: 3.4 Consensus size: 33
15706268 CGGAGGTCCA
** *
15706278 ACGATGGTGGAGTGGTGGTCCAACAGCGGTGTG
1 ACGATGGTGGAGTGGTGGTCTGACAGCGGTGCG
* *
15706311 GCGATGGTGGAGTGGTGGTCTGACAGCGGTACG
1 ACGATGGTGGAGTGGTGGTCTGACAGCGGTGCG
* * *
15706344 ACAATGGTGGAGTGGTGGTCTGACGGCAGTGCG
1 ACGATGGTGGAGTGGTGGTCTGACAGCGGTGCG
*
15706377 TCGATGGTGGAGTG
1 ACGATGGTGGAGTG
15706391 TCAGCCCGAC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.17, C:0.14, G:0.47, T:0.22
Consensus pattern (33 bp):
ACGATGGTGGAGTGGTGGTCTGACAGCGGTGCG
Found at i:15709097 original size:29 final size:28
Alignment explanation
Indices: 15708997--15709176 Score: 206
Period size: 28 Copynumber: 6.5 Consensus size: 28
15708987 ATCTCCATAG
* *
15708997 AGGCTTCCA-TCTCATAG-TTCTCCACAA
1 AGGCTTCCATTTTCATAGATT-GCCACAA
* * *
15709024 AGGCTTCCATTTTCACAAATTGCCATAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
* *
15709052 AGGCTACCATTTTCATATATTGCCACAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
*
15709080 AAGCTTCCATTTCTCATAGATTGCCACAA
1 AGGCTTCCATTT-TCATAGATTGCCACAA
*
15709109 AAGCTTCCATTTTTCATAGATTGCCACAA
1 AGGCTTCCA-TTTTCATAGATTGCCACAA
* *
15709138 AGGC-TCCATTTT-ATAGACTACCACAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
15709164 AGGCTTCCATTTT
1 AGGCTTCCATTTT
15709177 TCTAGCATGT
Statistics
Matches: 133, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
26 16 0.12
27 21 0.16
28 48 0.36
29 45 0.34
30 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
AGGCTTCCATTTTCATAGATTGCCACAA
Found at i:15709146 original size:57 final size:57
Alignment explanation
Indices: 15709018--15709178 Score: 211
Period size: 57 Copynumber: 2.9 Consensus size: 57
15709008 TCATAGTTCT
* * * * *
15709018 CCACAAAGGCTTCCATTTTCACAAATTGCCATAAAGGCTACCA-TTTTCATATATTG
1 CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
* *
15709074 CCACAAAAGCTTCCATTTCTCATAGATTGCCACAAAAGCTTCCATTTTTCATAGATTG
1 CCACAAAGGCTTCCATTT-TCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
* *
15709132 CCACAAAGGC-TCCATTTT-ATAGACTACCACAAAGGCTTCCATTTTTC
1 CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTC
15709179 TAGCATGTTC
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
55 26 0.28
56 18 0.20
57 27 0.29
58 21 0.23
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.32
Consensus pattern (57 bp):
CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
Found at i:15717054 original size:22 final size:22
Alignment explanation
Indices: 15717026--15717079 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
15717016 CATAAACACC
*
15717026 TAAAAATAAAATCACA-AAAAA
1 TAAAAATAAAATCAAATAAAAA
* *
15717047 TAAAAA-ATTAATTAAATAAAAA
1 TAAAAATA-AAATCAAATAAAAA
15717069 TAAAAATAAAA
1 TAAAAATAAAA
15717080 AACCAAATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 1 0.04
21 11 0.42
22 13 0.50
23 1 0.04
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAAAATAAAATCAAATAAAAA
Found at i:15720845 original size:3 final size:3
Alignment explanation
Indices: 15720839--15720868 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
15720829 TCTATAGTGG
15720839 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
15720869 TGTCGTCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:15723050 original size:20 final size:20
Alignment explanation
Indices: 15723025--15723143 Score: 105
Period size: 20 Copynumber: 6.0 Consensus size: 20
15723015 TTGTACGAGA
* *
15723025 TTTGCACTTCGGTGCCCTTG
1 TTTGCACTTCAGTGCCCCTG
* ** *
15723045 TTTGCAATTTGGTGCCCCTA
1 TTTGCACTTCAGTGCCCCTG
* * * *
15723065 TATACACTTCAGTGTCTCTG
1 TTTGCACTTCAGTGCCCCTG
*
15723085 TTTGCACTACAGTGCCCCTG
1 TTTGCACTTCAGTGCCCCTG
*
15723105 TTTGCACATT-TGTGCCCCTG
1 TTTGCAC-TTCAGTGCCCCTG
*
15723125 TCTGCACTTCAGTGCCCCT
1 TTTGCACTTCAGTGCCCCT
15723144 ATTATGCATC
Statistics
Matches: 76, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
19 2 0.03
20 73 0.96
21 1 0.01
ACGTcount: A:0.13, C:0.31, G:0.19, T:0.37
Consensus pattern (20 bp):
TTTGCACTTCAGTGCCCCTG
Found at i:15723120 original size:60 final size:60
Alignment explanation
Indices: 15723025--15723138 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
15723015 TTGTACGAGA
* * *
15723025 TTTGCACTTCGGTGCCCTTGTTTGCAATTTGGTGCCCCTATATACACTTCAGTGTCTCTG
1 TTTGCACTACAGTGCCCCTGTTTGCAATTTGGTGCCCCTATATACACTTCAGTGTCTCTG
* * *
15723085 TTTGCACTACAGTGCCCCTGTTTGCACATTT-GTGCCCCTGTCTGCACTTCAGTG
1 TTTGCACTACAGTGCCCCTGTTTGCA-ATTTGGTGCCCCTATATACACTTCAGTG
15723139 CCCCTATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
60 43 0.91
61 4 0.09
ACGTcount: A:0.13, C:0.29, G:0.20, T:0.38
Consensus pattern (60 bp):
TTTGCACTACAGTGCCCCTGTTTGCAATTTGGTGCCCCTATATACACTTCAGTGTCTCTG
Found at i:15725296 original size:29 final size:29
Alignment explanation
Indices: 15725263--15725321 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
15725253 TAAAAACTAC
15725263 ATGAATG-CATGAAATAGATAAAAATCAAA
1 ATGAATGACATGAAA-AGATAAAAATCAAA
**
15725292 ATGAATGATCATGAAAATTTAAAAATCAAA
1 ATGAATGA-CATGAAAAGATAAAAATCAAA
15725322 GCTTGGAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 12 0.46
31 7 0.27
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.24
Consensus pattern (29 bp):
ATGAATGACATGAAAAGATAAAAATCAAA
Found at i:15736121 original size:16 final size:16
Alignment explanation
Indices: 15736100--15736130 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15736090 TAAATTTAAA
15736100 TTTAAATGAAGAAAAT
1 TTTAAATGAAGAAAAT
*
15736116 TTTAAATGCAGAAAA
1 TTTAAATGAAGAAAA
15736131 GAAATTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.13, T:0.29
Consensus pattern (16 bp):
TTTAAATGAAGAAAAT
Found at i:15740902 original size:18 final size:18
Alignment explanation
Indices: 15740879--15740921 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
15740869 ACCTAATCCA
* *
15740879 AACCCAAGTATCCTACCC
1 AACCCAAGTACCCAACCC
*
15740897 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
15740915 AACCCAA
1 AACCCAA
15740922 CCTAATCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.47, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:15740908 original size:13 final size:13
Alignment explanation
Indices: 15740892--15740916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15740882 CCAAGTATCC
15740892 TACCCAACCCAAT
1 TACCCAACCCAAT
15740905 TACCCAACCCAA
1 TACCCAACCCAA
15740917 CCCAACCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
TACCCAACCCAAT
Found at i:15741078 original size:9 final size:9
Alignment explanation
Indices: 15741056--15741097 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
15741046 TTCAATTCTT
15741056 TTAATTCGAG
1 TTAATTCG-G
15741066 -TAATTCGG
1 TTAATTCGG
*
15741074 TTAATTTGG
1 TTAATTCGG
*
15741083 TTAATTCGA
1 TTAATTCGG
15741092 TTAATT
1 TTAATT
15741098 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
8 1 0.04
9 27 0.96
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.48
Consensus pattern (9 bp):
TTAATTCGG
Found at i:15748434 original size:48 final size:50
Alignment explanation
Indices: 15748376--15748502 Score: 159
Period size: 48 Copynumber: 2.6 Consensus size: 50
15748366 CACGTATTAG
* ** * *
15748376 CCTACACATAGTACTACACACGTGATCAA-GCTTTCCGGTTCACGCAGTA
1 CCTACACATAGTACTACACACGTGACCAAGGCCATCCGGTACACACAGTA
*
15748425 -CTACACATAGTACCACACACGTGACCAAGGCCATCCGGTACACACAGTA
1 CCTACACATAGTACTACACACGTGACCAAGGCCATCCGGTACACACAGTA
* *
15748474 GCCTGCACATAGTACTACACATGTGACCA
1 -CCTACACATAGTACTACACACGTGACCA
15748503 TTATCTATCG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 26 0.39
49 16 0.24
51 24 0.36
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.20
Consensus pattern (50 bp):
CCTACACATAGTACTACACACGTGACCAAGGCCATCCGGTACACACAGTA
Found at i:15748494 original size:51 final size:50
Alignment explanation
Indices: 15748373--15748548 Score: 187
Period size: 51 Copynumber: 3.5 Consensus size: 50
15748363 ATACACGTAT
* * * *
15748373 TAGCCTACACATAGTACTACACACGTGATCAAGCTTTCCGGTTCACGCAG
1 TAGCCTACACATAGTACTACACACGTGACCAAGCTATCCGGTACACACAG
* *
15748423 TA--CTACACATAGTACCACACACGTGACCAAGGCCATCCGGTACACACAG
1 TAGCCTACACATAGTACTACACACGTGACCAA-GCTATCCGGTACACACAG
* * * * *
15748472 TAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGATACACATAG
1 TAGCCTACACATAGTACTACACACGTGACCA--AGCTATCCGGTACACACAG
* *
15748523 TAGCCTGCACTTAGTACTACACACGT
1 TAGCCTACACATAGTACTACACACGT
15748549 CTTCATAGGT
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
48 26 0.25
49 16 0.15
50 2 0.02
51 58 0.55
52 3 0.03
53 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (50 bp):
TAGCCTACACATAGTACTACACACGTGACCAAGCTATCCGGTACACACAG
Found at i:15756686 original size:21 final size:21
Alignment explanation
Indices: 15756641--15756686 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
15756631 TCAATGTCGT
* * * *
15756641 GACACAAAACTGTTGTGTTAT
1 GACACAAAACTGCTGCGTCAC
15756662 GACACAAAACTGCTGCGTCAC
1 GACACAAAACTGCTGCGTCAC
15756683 GACA
1 GACA
15756687 TAGTAGAAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (21 bp):
GACACAAAACTGCTGCGTCAC
Found at i:15761115 original size:27 final size:27
Alignment explanation
Indices: 15761075--15761248 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
15761065 CGAAAAGCTT
*
15761075 GTAAAATGATCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
15761102 GTAAAATGACCGTAATACCCCTGTAGTG
1 GTAAAATGACCGTAATACCCCTGTAG-G
* * *
15761130 G-AAAATGACTGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
15761156 GTAAAATAACCGTAATACCCCTATAAG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * * *
15761183 GTAAAATGACCATAATGCCCCTATAAG
1 GTAAAATGACCGTAATACCCCTGTAGG
** *
15761210 GTAAAATGATTGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
15761237 ATAAAATAACCG
1 GTAAAATGACCG
15761249 GAATGCCTTG
Statistics
Matches: 121, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 117 0.97
28 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:15761173 original size:81 final size:81
Alignment explanation
Indices: 15761075--15761248 Score: 233
Period size: 81 Copynumber: 2.1 Consensus size: 81
15761065 CGAAAAGCTT
* * * * * *
15761075 GTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGT-AGTGGAAAATGAC
1 GTAAAATAACCGTAATACCCCTATAAGGTAAAATGACCATAATACCCCTATAAG-GGAAAATGAC
*
15761139 TGTAATGCCCTTGTAGG
65 TGTAATACCCTTGTAGG
* * *
15761156 GTAAAATAACCGTAATACCCCTATAAGGTAAAATGACCATAATGCCCCTATAAGGTAAAATGATT
1 GTAAAATAACCGTAATACCCCTATAAGGTAAAATGACCATAATACCCCTATAAGGGAAAATGACT
15761221 GTAATACCCTTGTAGG
66 GTAATACCCTTGTAGG
*
15761237 ATAAAATAACCG
1 GTAAAATAACCG
15761249 GAATGCCTTG
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 79 0.98
82 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (81 bp):
GTAAAATAACCGTAATACCCCTATAAGGTAAAATGACCATAATACCCCTATAAGGGAAAATGACT
GTAATACCCTTGTAGG
Found at i:15761351 original size:24 final size:24
Alignment explanation
Indices: 15761316--15761373 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
15761306 CTGTGGTTAA
15761316 ATGACTGATTTGTCTATG-TTTGGT
1 ATGACTGATTTGTCTATGATTT-GT
* *
15761340 ATGACTGGTTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTATGATTTGT
15761364 ATGACTGATT
1 ATGACTGATT
15761374 CTGAGCATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTATGATTTGT
Found at i:15761591 original size:32 final size:32
Alignment explanation
Indices: 15761548--15761683 Score: 168
Period size: 32 Copynumber: 4.3 Consensus size: 32
15761538 GTGATGCTAT
15761548 TGATGGCTTTGTGCCGATCATATCACTGTTAC
1 TGATGGCTTTGTGCCGATCATATCACTGTTAC
* * *
15761580 TGATGGTTTTGTACCGATCATATTA-TCGTTAC
1 TGATGGCTTTGTGCCGATCATATCACT-GTTAC
* * *
15761612 TGATGACTATGTGCCGATCATATCACTGCTAC
1 TGATGGCTTTGTGCCGATCATATCACTGTTAC
* *
15761644 TGATGGCTTTGTGCCAATCATATTACTG-TAC
1 TGATGGCTTTGTGCCGATCATATCACTGTTAC
*
15761675 TTATGGCTT
1 TGATGGCTT
15761684 GTAGCCATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
31 12 0.14
32 75 0.85
33 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATCACTGTTAC
Found at i:15761649 original size:64 final size:64
Alignment explanation
Indices: 15761548--15761668 Score: 188
Period size: 64 Copynumber: 1.9 Consensus size: 64
15761538 GTGATGCTAT
* * * * *
15761548 TGATGGCTTTGTGCCGATCATATCACTGTTACTGATGGTTTTGTACCGATCATATTATCGTTAC
1 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTATCGTTAC
*
15761612 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTA
1 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTA
15761669 CTGTACTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (64 bp):
TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTATCGTTAC
Found at i:15764436 original size:18 final size:19
Alignment explanation
Indices: 15764415--15764451 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15764405 CTTGAAAAGT
*
15764415 ATATTGTGTGA-TGTGATG
1 ATATTATGTGATTGTGATG
15764433 ATATTATGTGATTGTGATG
1 ATATTATGTGATTGTGATG
15764452 TTTTTGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (19 bp):
ATATTATGTGATTGTGATG
Found at i:15773106 original size:50 final size:50
Alignment explanation
Indices: 15773045--15773144 Score: 146
Period size: 50 Copynumber: 2.0 Consensus size: 50
15773035 TGTCAGAAAT
* * *
15773045 AGAATAGTGTGGTCAAGCCACCAAATATTTGTAGATTTACTGCCAGATAC
1 AGAATAATGTGGACAAGCCACCAAAAATTTGTAGATTTACTGCCAGATAC
* * *
15773095 AGAATAATGTGGACATGCCACCAAAAATTTGTAGATTTATTTCCAGATAC
1 AGAATAATGTGGACAAGCCACCAAAAATTTGTAGATTTACTGCCAGATAC
15773145 TTCTTCTGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (50 bp):
AGAATAATGTGGACAAGCCACCAAAAATTTGTAGATTTACTGCCAGATAC
Found at i:15777522 original size:13 final size:13
Alignment explanation
Indices: 15777504--15777529 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15777494 TTGGATCCAT
15777504 ACCAAAACAATCA
1 ACCAAAACAATCA
15777517 ACCAAAACAATCA
1 ACCAAAACAATCA
15777530 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:15779645 original size:13 final size:13
Alignment explanation
Indices: 15779627--15779651 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15779617 ACAAACGATA
15779627 AAATTTTCACACG
1 AAATTTTCACACG
15779640 AAATTTTCACAC
1 AAATTTTCACAC
15779652 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:15783216 original size:28 final size:29
Alignment explanation
Indices: 15783151--15783249 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
15783141 CATGAGATTG
* *
15783151 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
15783180 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
15783208 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
15783236 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
15783250 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:15788678 original size:13 final size:13
Alignment explanation
Indices: 15788660--15788684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15788650 TTTGGATCCG
15788660 TACCAAAACAATC
1 TACCAAAACAATC
15788673 TACCAAAACAAT
1 TACCAAAACAAT
15788685 AATGAAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (13 bp):
TACCAAAACAATC
Found at i:15789651 original size:44 final size:41
Alignment explanation
Indices: 15789543--15789663 Score: 125
Period size: 44 Copynumber: 2.9 Consensus size: 41
15789533 TCTTACATGT
* * * **
15789543 ATCGATGCCACTGTCCCAAACAGGGTCTTACACGAAATTGT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATTAA
* * * *
15789584 ATACGATGTCGATATCCTAGACATGGTCTTACACGTAAATCTCAA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACACG-AAAT-T-AA
15789629 ATCGATGCCAATGTCCCAGACATGGTCTTACACGA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGA
15789664 TAACTCATTC
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.03
42 25 0.40
43 5 0.08
44 29 0.46
45 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (41 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATTAA
Found at i:15790801 original size:13 final size:13
Alignment explanation
Indices: 15790783--15790807 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15790773 CACAAACGAT
15790783 AAAATTTTCACAC
1 AAAATTTTCACAC
15790796 AAAATTTTCACA
1 AAAATTTTCACA
15790808 TATATAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:15793608 original size:15 final size:15
Alignment explanation
Indices: 15793567--15793622 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
15793557 TAGTGTATTA
*
15793567 ATTTTTAATTATTTTT
1 ATTTTT-ATTTTTTTT
15793583 ATTTTCATTATTTTTTGTT
1 A-TTT--TTATTTTTT-TT
15793602 -TTTTTATTTTTTTT
1 ATTTTTATTTTTTTT
15793616 ATTTTTA
1 ATTTTTA
15793623 GATACATTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
14 2 0.06
15 15 0.44
16 1 0.03
17 6 0.18
18 6 0.18
19 4 0.12
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (15 bp):
ATTTTTATTTTTTTT
Found at i:15798560 original size:24 final size:24
Alignment explanation
Indices: 15798528--15798585 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
15798518 TGTAACACCC
15798528 CGAACCCGAGACCGTCGCCGGAGT
1 CGAACCCGAGACCGTCGCCGGAGT
15798552 CGAACCCGAGACCGTCGCCGGAGT
1 CGAACCCGAGACCGTCGCCGGAGT
*
15798576 CGAACACGAG
1 CGAACCCGAG
15798586 GTGTTAACAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.24, C:0.36, G:0.33, T:0.07
Consensus pattern (24 bp):
CGAACCCGAGACCGTCGCCGGAGT
Found at i:15800101 original size:29 final size:27
Alignment explanation
Indices: 15800083--15800152 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
15800073 ATATTAAGTC
15800083 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
15800110 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
15800138 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
15800153 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:15800146 original size:28 final size:28
Alignment explanation
Indices: 15800083--15800177 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
15800073 ATATTAAGTC
*
15800083 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
15800110 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
15800138 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
15800167 CGCACACTTAG
1 CGCACACTTAG
15800178 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:15808077 original size:30 final size:30
Alignment explanation
Indices: 15808017--15808382 Score: 264
Period size: 30 Copynumber: 12.3 Consensus size: 30
15808007 GTTACCACCA
* * * * *
15808017 CTTTTCATAGTTCGATAGTCAAAGCTATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
* * *
15808047 CTTTCCATATTTTGAGAGCCGAAGCCATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
* * * *
15808077 CTTTTCATAATTCGATGGTCGTCA-CCATCC
1 CTTTTCATAATTTGATAGCCG-AAGCCATCC
* * * *
15808107 CTTTTCAT--TGTTAATGGTCGTCA-CCATCC
1 CTTTTCATAAT-TTGATAGCCG-AAGCCATCC
*
15808136 CTTTTCATAATTTGATAGCCGAAGCTATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
*
15808166 CTTTTCATAATTGGATAGCCGAAGCCATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
* *
15808196 CTTTTCATAATTTGATAGCCAAACCCATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
*
15808226 CTTTTCATAATTTGATAGCCAAAGCCATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
* * * * *
15808256 CTTTTCAAAATTCGATGGCCGTCA-CCATTC
1 CTTTTCATAATTTGATAGCCG-AAGCCATCC
** * *
15808286 CTTTTCAT-GGTTGATGGTC-ATCA-CCATCC
1 CTTTTCATAATTTGATAGCCGA--AGCCATCC
* * **
15808315 TTTTTCATAATTTGATAGTCGAAGTTATCC
1 CTTTTCATAATTTGATAGCCGAAGCCATCC
* * * *
15808345 C-TTTCTATATTTTGATAACTGAAGTCATCC
1 CTTTTC-ATAATTTGATAGCCGAAGCCATCC
15808375 CTTTTCAT
1 CTTTTCAT
15808383 TGGTCGATGA
Statistics
Matches: 271, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
28 1 0.00
29 51 0.19
30 211 0.78
31 8 0.03
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (30 bp):
CTTTTCATAATTTGATAGCCGAAGCCATCC
Found at i:15808133 original size:29 final size:30
Alignment explanation
Indices: 15808071--15808147 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
15808061 AGAGCCGAAG
*
15808071 CCATCCCTTTTCATAATTCGATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
**
15808101 CCATCCCTTTTCATTGTT-AATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
15808130 CCATCCCTTTTCATAATT
1 CCATCCCTTTTCATAATT
15808148 TGATAGCCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 26 0.62
30 16 0.38
ACGTcount: A:0.19, C:0.30, G:0.10, T:0.40
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCAATGGTCGTCA
Found at i:15808224 original size:119 final size:119
Alignment explanation
Indices: 15808017--15808233 Score: 301
Period size: 119 Copynumber: 1.8 Consensus size: 119
15808007 GTTACCACCA
* * * *
15808017 CTTTTCATAGTTCGATAGTCAAAGCTATCCCTTTCCATATTTTGAGAGCCGAAGCCATCCCTTTT
1 CTTTTCATAATTCGATAGCCAAAGCTATCCCTTTCCATAATTGGAGAGCCGAAGCCATCCCTTTT
* * **
15808082 CATAATTCGATGGTCGTCACCATCCCTTTTCATTGTTAATGGTCGTCACCATCC
66 CATAATTCGATAGCCAACACCATCCCTTTTCATTGTTAATGGTCGTCACCATCC
* * * *
15808136 CTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTGGATAGCCGAAGCCATCCCTTTT
1 CTTTTCATAATTCGATAGCCAAAGCTATCCCTTTCCATAATTGGAGAGCCGAAGCCATCCCTTTT
*
15808201 CATAATTTGATAGCCAA-ACCCATCCCTTTTCAT
66 CATAATTCGATAGCCAACA-CCATCCCTTTTCAT
15808234 AATTTGATAG
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
118 1 0.01
119 83 0.99
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (119 bp):
CTTTTCATAATTCGATAGCCAAAGCTATCCCTTTCCATAATTGGAGAGCCGAAGCCATCCCTTTT
CATAATTCGATAGCCAACACCATCCCTTTTCATTGTTAATGGTCGTCACCATCC
Found at i:15808322 original size:179 final size:179
Alignment explanation
Indices: 15808017--15808382 Score: 509
Period size: 179 Copynumber: 2.0 Consensus size: 179
15808007 GTTACCACCA
* * * * * *
15808017 CTTTTCATAGTTCGATAGTCAAAGCTATCCCTTTCCATATTTTGAGAGCCGAAGCCATCCCTTTT
1 CTTTTCATAATTCGATAGCCAAACCCATCCCTTTCCATAATTTGAGAGCCAAAGCCATCCCTTTT
* * * *
15808082 CATAATTCGATGGTCGTCACCATCCCTTTTCATTGTTAATGGTCGTCACCATCCCTTTTCATAAT
66 CAAAATTCGATGGCCGTCACCATCCCTTTTCATGGTTAATGGTCATCACCATCCCTTTTCATAAT
*
15808147 TTGATAGCCGAAGCTATCCCTTT-TCATAATTGGATAGCCGAAGCCATCC
131 TTGATAGCCGAAGCTATCCCTTTCT-ATAATTGGATAACCGAAGCCATCC
* * *
15808196 CTTTTCATAATTTGATAGCCAAACCCATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTT
1 CTTTTCATAATTCGATAGCCAAACCCATCCCTTTCCATAATTTGAGAGCCAAAGCCATCCCTTTT
* * *
15808261 CAAAATTCGATGGCCGTCACCATTCCTTTTCATGGTTGATGGTCATCACCATCCTTTTTCATAAT
66 CAAAATTCGATGGCCGTCACCATCCCTTTTCATGGTTAATGGTCATCACCATCCCTTTTCATAAT
* * * * * *
15808326 TTGATAGTCGAAGTTATCCCTTTCTATATTTTGATAACTGAAGTCATCC
131 TTGATAGCCGAAGCTATCCCTTTCTATAATTGGATAACCGAAGCCATCC
15808375 CTTTTCAT
1 CTTTTCAT
15808383 TGGTCGATGA
Statistics
Matches: 163, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
179 162 0.99
180 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (179 bp):
CTTTTCATAATTCGATAGCCAAACCCATCCCTTTCCATAATTTGAGAGCCAAAGCCATCCCTTTT
CAAAATTCGATGGCCGTCACCATCCCTTTTCATGGTTAATGGTCATCACCATCCCTTTTCATAAT
TTGATAGCCGAAGCTATCCCTTTCTATAATTGGATAACCGAAGCCATCC
Found at i:15809182 original size:21 final size:23
Alignment explanation
Indices: 15809158--15809205 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
15809148 ATGAAAATTT
15809158 GTTTTACTTTA-TT-TTTACTTA
1 GTTTTACTTTATTTATTTACTTA
15809179 G-TTTA-TTTATTTATTTACTTA
1 GTTTTACTTTATTTATTTACTTA
15809200 -TTTTAC
1 GTTTTAC
15809206 CTTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 4 0.17
20 6 0.26
21 13 0.57
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
GTTTTACTTTATTTATTTACTTA
Found at i:15816425 original size:16 final size:16
Alignment explanation
Indices: 15816388--15816430 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
15816378 TTGAAGTAAC
*
15816388 AATTGTTGTTTAAAAT
1 AATTGTTGTTCAAAAT
*
15816404 AGTTGTTGTTCACAAA-
1 AATTGTTGTTCA-AAAT
15816420 AATTGTTGTTC
1 AATTGTTGTTC
15816431 GAGAATAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (16 bp):
AATTGTTGTTCAAAAT
Found at i:15816452 original size:15 final size:15
Alignment explanation
Indices: 15816432--15816465 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15816422 TTGTTGTTCG
15816432 AGAATAACTATGTCC
1 AGAATAACTATGTCC
**
15816447 AGAATAGTTATGTCC
1 AGAATAACTATGTCC
15816462 AGAA
1 AGAA
15816466 CACAGCTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (15 bp):
AGAATAACTATGTCC
Found at i:15824827 original size:113 final size:113
Alignment explanation
Indices: 15824629--15824854 Score: 407
Period size: 113 Copynumber: 2.0 Consensus size: 113
15824619 GCAACATGTC
* * *
15824629 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTGGTTCTTTTG
1 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
15824694 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
66 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
*
15824742 AGTTAATCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
1 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
*
15824807 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTTATTGT
66 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
15824855 CTGAGAAACC
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 108 1.00
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.43
Consensus pattern (113 bp):
AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
Found at i:15838970 original size:270 final size:269
Alignment explanation
Indices: 15838488--15839011 Score: 741
Period size: 270 Copynumber: 1.9 Consensus size: 269
15838478 CTTATTTCGC
15838488 AAAATGCAAATAACTAATTAAACAAATGATGTTTAGAAAATGAATCTAAAAAAATTATATAAAAT
1 AAAATGCAAATAACTAATTAAACAAATGATGTTTAGAAAATGAATCTAAAAAAATTATAT-AAAT
*
15838553 CAAATGGGAGGGGTGCAACACGAGGACTCCCAAGAGGTCACCCATCCTAGTACTACTCTTGCCCA
65 -AAATGGGAGGGGTGCAACACGAGGACTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * *
15838618 AGCACACTCGACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCGTG
129 AGCACACTAGACTGCGGAGTTCTAATAGGATCCGATGCATTAGTGCTGGTATGATCGCACCCGTC
* * *
15838683 AACTCTTGCGCAATCTATTTATATGAAGGATGCCCCTTATCGCACTTGCACCTCGAATTAGTTAC
194 AACTCTTGCGCAATCTATTCATATAAAGGATGCCCCTTATCGCACTTCCACCTCGAATTAGTTAC
15838748 ATGATGTTTAG
259 ATGATGTTTAG
* *** * *
15838759 AAAATGCCAATAACTAATTAGTTACATGATGTTTAGAAAATGCAA-CTAAAAAAAATTATAT-GA
1 AAAATGCAAATAACTAATTAAACAAATGATGTTTAGAAAATG-AATCT-AAAAAAATTATATAAA
* *
15838822 T-GATGGGAGGGGTGCAACACGAGGACTTCCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCT
64 TAAATGGGAGGGGTGCAACACGAGGAC-TCCCAA-GAGGTCACCCATCCTAGTACTACTCTCGCC
* * * *
15838886 CAAGCACGCTTAG-CTGCGGAGTTCTAATAGGATCTGGTGCATTAGTGTTGGTATGATCGCACCC
127 CAAGCACAC-TAGACTGCGGAGTTCTAATAGGATCCGATGCATTAGTGCTGGTATGATCGCACCC
* * * *
15838950 GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTCTCGTACTTCCGCCTCGAATT
191 GTCAACTCTTGCGCAATCTATTCATATAAAGGATGCCCCTTATCGCACTTCCACCTCGAATT
15839012 TAAATGCAAA
Statistics
Matches: 224, Mismatches: 24, Indels: 11
0.86 0.09 0.04
Matches are distributed among these distances:
268 24 0.11
269 6 0.03
270 138 0.62
271 41 0.18
272 15 0.07
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (269 bp):
AAAATGCAAATAACTAATTAAACAAATGATGTTTAGAAAATGAATCTAAAAAAATTATATAAATA
AATGGGAGGGGTGCAACACGAGGACTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
CACACTAGACTGCGGAGTTCTAATAGGATCCGATGCATTAGTGCTGGTATGATCGCACCCGTCAA
CTCTTGCGCAATCTATTCATATAAAGGATGCCCCTTATCGCACTTCCACCTCGAATTAGTTACAT
GATGTTTAG
Found at i:15839582 original size:563 final size:564
Alignment explanation
Indices: 15838535--15840212 Score: 2441
Period size: 563 Copynumber: 2.9 Consensus size: 564
15838525 AAATGAATCT
* *
15838535 AAAAAA-ATTATATAAAATCAAATGGGAGGGGTGCAACACGAGGAC-TCCCAAGAGGTCACCCAT
1 AAAAAACATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * ** *
15838598 CCTAGTACTACTCTTGCCCAAGCACACTCGACTGCGGAGTTCTGATGGGATCCGATGCATTAGTG
66 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* * * *
15838663 CTGGTATGATCGCACCCGTGAACTCTTGCGCAATCTATTTATATGAAGGATGCCCCTTATCGCAC
131 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * * *
15838728 TTGCACCTCGAATTAGTT-ACATGATGTTTAGAAAATGCCAATAACTAATTAGTTACATGATGTT
196 TTG--CCTCGAATTAGTTAACATGATTTTTATAAAA-ACCAATAACGAA-TAGTTACATG-TG--
*
15838792 TAGAAAATGCAACTAAAAAAA-ATTATATG--ATGATGGGAGGGGTGCAACACGAGGACTTCCCA
254 -AGAAAA-GCAACTAAAAAAACATTATATGAAATAATGGGAGGGGTGCAACACGAGGACTTCCC-
* *
15838854 AGGAGGTCACCCATCCTAGTACTACTCTCGCTCAAGCACGCTTAGCTGCGGAGTTCTAATAGGAT
316 AGGAGGTCACCCATCCTAGTACTACTCTCGC-CAAGCACGCTTA-CTGCGGAGTTCTGATGGGAT
* *
15838919 CTGGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
379 CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* * * *
15838984 GCCCCTTCTCGTACTTCCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCGAAATTATT
444 GCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATT
*
15839049 TATTTCACAAAACGCAAATAACGAATAAGTTCCACCACGTGGAGAAAACGCAACTA
509 TATTTCACAAAACGCAAATAACGAATAAGTTACACCACGTGGAGAAAACGCAACTA
15839105 AAAAAACATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
1 AAAAAACATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
*
15839170 CCTAATACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
66 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
15839235 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAT-AAGGCTGCCCCTTATCGCAC
131 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
15839299 TTGCCTCGAATTAGTTAACATGATTTTTA-AAAAACCAATAACGAATAGTTACATGTGAGAAAAA
196 TTGCCTCGAATTAGTTAACATGATTTTTATAAAAACCAATAACGAATAGTTACATGTGAG-AAAA
15839363 CGCAACTAAAAAAACATTATATGAAAT-ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
260 -GCAACTAAAAAAACATTATATGAAATAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
15839427 ACCCATCCTAGTACTACTCTCGCCAAGCACGCTTACTGCGGAGTTCTGATGGGATCCGGTGCATT
324 ACCCATCCTAGTACTACTCTCGCCAAGCACGCTTACTGCGGAGTTCTGATGGGATCCGGTGCATT
15839492 AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATC
389 AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATC
15839557 AG-ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCACA
454 -GCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCACA
*
15839621 AAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAACGCAACTA
518 AAACGCAAATAACGAATAAGTTACACCACGTGGAGAAAACGCAACTA
*
15839668 AAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
1 AAAAAACATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
15839733 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
66 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
15839798 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTAT--CAC
131 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
*
15839861 TTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCACAAAACG
196 TT--GCCTCGAA-TT--A-G----TT------AACAT-G------ATT-TTTA--T-A-AAAAC-
*
15839926 CAAATAACGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAACATTATATGAAATAAAA
232 C-AATAACGAAT-AGTT--A-CATGT-GAGAAAA-GCAACTAAAAAAACATTATATGAAAT--AA
15839991 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
288 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCAAGC
* *** *
15840056 ACGCTTAACTTCTTTGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCTAC
352 ACGCTT-ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
15840121 TCTTGCGCAATCTATTCATATAAAGGCT---CCTTATCGCACTTGCGCCTCGAATTTAAATGCAA
416 TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAA
15840183 ATTCGACCAAATATCGTTCCAAATTATTTA
481 ATTCGACCAAATATCGTTCCAAATTATTTA
15840213 CATATAAAGG
Statistics
Matches: 1024, Mismatches: 33, Indels: 73
0.91 0.03 0.06
Matches are distributed among these distances:
562 5 0.00
563 369 0.36
564 53 0.05
565 41 0.04
566 31 0.03
567 13 0.01
568 11 0.01
569 17 0.02
570 17 0.02
571 60 0.06
572 120 0.12
578 4 0.00
579 1 0.00
585 3 0.00
586 4 0.00
590 1 0.00
591 5 0.00
592 1 0.00
593 10 0.01
594 4 0.00
596 1 0.00
597 35 0.03
598 4 0.00
599 62 0.06
600 59 0.06
601 12 0.01
602 81 0.08
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (564 bp):
AAAAAACATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
TTGCCTCGAATTAGTTAACATGATTTTTATAAAAACCAATAACGAATAGTTACATGTGAGAAAAG
CAACTAAAAAAACATTATATGAAATAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
CCATCCTAGTACTACTCTCGCCAAGCACGCTTACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCACAAAA
CGCAAATAACGAATAAGTTACACCACGTGGAGAAAACGCAACTA
Found at i:15839932 original size:300 final size:300
Alignment explanation
Indices: 15839359--15840212 Score: 1571
Period size: 300 Copynumber: 2.9 Consensus size: 300
15839349 ACATGTGAGA
15839359 AAAACGCAACTAAAAAAACATTATATGAAAT---ATGGGAGGGGTGCAACACGAGGACTTCCCAG
1 AAAACGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
15839421 GAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCACGCTT-ACTGCGGAGTTCTGATGGGATCC
66 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
15839484 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
131 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
15839549 CCCTTATCAGACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTA
196 CCCTTATC--ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTA
15839614 TTTCACAAAACGCAAATAACGAATGAGTTACACCACGTGGAG
259 TTTCACAAAACGCAAATAACGAATGAGTTACACCACGTGGAG
15839656 AAAACGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
1 AAAACGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
15839721 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
66 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
15839786 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
131 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
15839851 CCCTTATCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATT
196 CCCTTATCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATT
15839916 TCACAAAACGCAAATAACGAATGAGTTACACCACGTGGAG
261 TCACAAAACGCAAATAACGAATGAGTTACACCACGTGGAG
15839956 AAAACGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
1 AAAACGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
* ***
15840021 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTTCTTTGTTCTGATGGGATCC
66 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
*
15840086 GGTGCATTAGTGCTGGTATGATCGCACCCGTCTACTCTTGCGCAATCTATTCATATAAAGGCT--
131 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
15840149 -CCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTA
196 CCCTTAT--CACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTA
15840213 CATATAAAGG
Statistics
Matches: 545, Mismatches: 5, Indels: 12
0.97 0.01 0.02
Matches are distributed among these distances:
297 37 0.07
299 56 0.10
300 344 0.63
301 12 0.02
302 96 0.18
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (300 bp):
AAAACGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
CCCTTATCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATT
TCACAAAACGCAAATAACGAATGAGTTACACCACGTGGAG
Done.