Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 67 of 172
Found at i:18717610 original size:217 final size:217
Alignment explanation
Indices: 18717235--18717791 Score: 889
Period size: 217 Copynumber: 2.6 Consensus size: 217
18717225 TTCGCTATTC
* * * *
18717235 TCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGGTGTGATCTACTCTACTACAACTTCA
1 TCAGTCTGCTCCACTGCAACCTCAGGGGGATAAGACCTGATGCGATCTACTCTACTACAACTTCA
* * * * *
18717300 GAGAGATAAGATCTATTATTTCAATCTACTCCACTACAACTTCAGGAAGATAGGATTACTGACTT
66 GAGAGATAAGACCTTTTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGACTT
18717365 CAATGTACTCCACTGTATCCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTAATTCT
131 CAATGTACTCCACTGTATCCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTAATTCT
*
18717430 TAGGGAGATAAGATCTGTTTCT
196 TACGGAGATAAGATCTGTTTCT
* * **
18717452 TCAGTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
1 TCAGTCTGCTCCACTGCAACCTCAGGGGGATAAGACCTGATGCGATCTACTCTACTACAACTTCA
*
18717517 GAGAGATAAGACCTTTTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTT
66 GAGAGATAAGACCTTTTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGACTT
** *
18717582 CAATGTACTCCACTGTATCCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTTCT
131 CAATGTACTCCACTGTATCCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTAATTCT
18717647 TACGGAGATAAGATCTGTTTCT
196 TACGGAGATAAGATCTGTTTCT
* ** * *
18717669 TCGGTCTGCTCTGCTGCAACCTTAGGGGGATAAGACTTGATGCGATCTACTCTACTACAACTTCA
1 TCAGTCTGCTCCACTGCAACCTCAGGGGGATAAGACCTGATGCGATCTACTCTACTACAACTTCA
* *
18717734 GAGAGATAAGACCTTTTATTTTAATCCACTCCACTGCGACTTCAGGGAGATAGGATTA
66 GAGAGATAAGACCTTTTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTA
18717792 GTCGCTTAAA
Statistics
Matches: 311, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
217 311 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (217 bp):
TCAGTCTGCTCCACTGCAACCTCAGGGGGATAAGACCTGATGCGATCTACTCTACTACAACTTCA
GAGAGATAAGACCTTTTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGACTT
CAATGTACTCCACTGTATCCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTAATTCT
TACGGAGATAAGATCTGTTTCT
Found at i:18726614 original size:20 final size:20
Alignment explanation
Indices: 18726586--18726623 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18726576 TTTTTTGAAG
*
18726586 ACAAATTTAAATATGATAAA
1 ACAAATTTAAAAATGATAAA
*
18726606 ACAATTTTAAAAATGATA
1 ACAAATTTAAAAATGATA
18726624 GCAATAAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
ACAAATTTAAAAATGATAAA
Found at i:18730624 original size:50 final size:48
Alignment explanation
Indices: 18730496--18730737 Score: 166
Period size: 50 Copynumber: 4.8 Consensus size: 48
18730486 GATAATAACA
* * ** *
18730496 TGCCAAAGCCATTTCCCAGACATGGTCTTACATGGGATGTTTCCAGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT-CA-TATC
* * * * **
18730545 TGCCAATGTCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC
* * * *
18730593 GGTGCCCATGCCATGTCCTAGACATGGTCTTACA-GGGAACCTCTTATCTC
1 --TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATATC
18730643 AATGCCAACT-CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTC
1 --TGCCAA-TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC
* *
18730696 AATAATGCCAATGCCATGTCTCAGGCATGGTCTTACATGGGA
1 -----TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
18730738 TCTCATTCCC
Statistics
Matches: 156, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
47 2 0.01
48 3 0.02
49 37 0.24
50 72 0.46
51 4 0.03
53 2 0.01
55 1 0.01
56 35 0.22
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC
Found at i:18739301 original size:27 final size:27
Alignment explanation
Indices: 18739271--18739353 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
18739261 GTAATGGCTG
18739271 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* *** ***
18739298 ATGTGAT-AAGGCCTAA-TG-ACCGA-
1 ATGTGATGAATGTGAAAGTGTATATAT
18739321 -TGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
18739347 ATGTGAT
1 ATGTGAT
18739354 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:18739324 original size:49 final size:49
Alignment explanation
Indices: 18739262--18740172 Score: 1518
Period size: 49 Copynumber: 18.9 Consensus size: 49
18739252 TAGTATGGCG
*
18739262 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
18739311 TAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739360 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
18739407 TAATAGCCGATGTGATGAATGTAAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739456 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739505 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739552 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739601 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
18739648 TAA-AGTCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCC
18739698 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
18739745 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739794 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739841 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739890 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
18739937 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18739986 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
18740035 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
18740082 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
18740129 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
18740173 TCCCGAAGGG
Statistics
Matches: 817, Mismatches: 28, Indels: 36
0.93 0.03 0.04
Matches are distributed among these distances:
46 23 0.03
47 346 0.42
48 1 0.00
49 404 0.49
50 20 0.02
51 23 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:18739428 original size:96 final size:95
Alignment explanation
Indices: 18739262--18740172 Score: 1497
Period size: 96 Copynumber: 9.5 Consensus size: 95
18739252 TAGTATGGCG
* *
18739262 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739327 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTG--TATATATGTGATAAGGCC
*
18739360 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
18739424 AATGTAAAAGTGTATATATATGTGATAAGGCC
66 AATGTGAAAGTG--TATATATGTGATAAGGCC
18739456 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739521 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
18739552 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739617 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
18739648 TAA-AGTCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAGGGCCTAATGGCCGATGTG
1 TAATGGCCGATGTGATGAATGTGAAAGTG---ATATATATGTGATAAGGCCTAATGGCCGATGTG
18739712 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
63 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
18739745 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739810 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
18739841 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739906 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
18739937 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18740002 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTG--TATATATGTGATAAGGCC
18740035 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
18740099 AATGTGAAAGTGTATATATGTGACAGGGCC
66 AATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
18740129 GAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
18740173 TCCCGAAGGG
Statistics
Matches: 780, Mismatches: 26, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
94 54 0.07
95 23 0.03
96 493 0.63
97 68 0.09
98 142 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (95 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:18739445 original size:145 final size:143
Alignment explanation
Indices: 18739262--18740172 Score: 1526
Period size: 145 Copynumber: 6.3 Consensus size: 143
18739252 TAGTATGGCG
* *
18739262 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739327 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
18739392 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
* *
18739407 TAATAGCCGATGTGATGAATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739472 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
18739537 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
18739552 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
18739617 GAATGTGAAAGTGTATATATGTGATAAGGCCTAA-AGTCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----T
*
18739681 ATATATGTGATAGGGCC
127 ATATATGTGATAAGGCC
* *
18739698 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739761 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
18739826 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
18739841 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18739906 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
18739971 ATATGTGATGAGGCC
129 ATATGTGATAAGGCC
18739986 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
18740051 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
18740116 ATGTGACAGGGCC
131 ATGTGATAAGGCC
* * * * *
18740129 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
18740173 TCCCGAAGGG
Statistics
Matches: 730, Mismatches: 25, Indels: 26
0.93 0.03 0.03
Matches are distributed among these distances:
141 10 0.01
142 24 0.03
143 157 0.22
144 45 0.06
145 404 0.55
146 67 0.09
147 23 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCC
Found at i:18743014 original size:50 final size:50
Alignment explanation
Indices: 18742960--18743072 Score: 145
Period size: 50 Copynumber: 2.3 Consensus size: 50
18742950 GGTCTTACAT
* * *
18742960 GGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAAACATGATCTTACGG
1 GGGAGCTCTCATATCGGTGCCAACGCCATGTCCCAAACATGATCTTACGG
* * * **
18743010 GGGAGCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAT
1 GGGAGCTCTCATATCGGTGCCAACGCCATGTCCCAAACATGATCTTACGG
*
18743060 GGGACCTCTCATA
1 GGGAGCTCTCATA
18743073 ACCTCAATAA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (50 bp):
GGGAGCTCTCATATCGGTGCCAACGCCATGTCCCAAACATGATCTTACGG
Found at i:18748932 original size:14 final size:15
Alignment explanation
Indices: 18748899--18748937 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
18748889 CACCCAAAAC
18748899 ACACCTCAACTTTATA
1 ACACCTCAAC-TTATA
*
18748915 ACACCTCAA-TTCTA
1 ACACCTCAACTTATA
18748929 ACACCTCAA
1 ACACCTCAA
18748938 GACCACCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.59
16 9 0.41
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (15 bp):
ACACCTCAACTTATA
Found at i:18755588 original size:27 final size:27
Alignment explanation
Indices: 18755542--18755809 Score: 153
Period size: 27 Copynumber: 10.0 Consensus size: 27
18755532 TATCTGGACC
* * *
18755542 GAAATACCCTCAAAGGGTAAAATGATT
1 GAAATACCCTCGATGGGTAAAATGACT
*
18755569 GAAATACCCTCGATGAGTAAAATGACT
1 GAAATACCCTCGATGGGTAAAATGACT
*
18755596 GAAATACCCTCGATGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATGACT
* * *
18755623 GAAATTCCC-CCATAGGGTAAAATGATT
1 GAAATACCCTCGAT-GGGTAAAATGACT
* * *
18755650 GAAATGCCC-CTG-TAGGGTAGAAT-ACC
1 GAAATACCCTC-GAT-GGGTAAAATGACT
* * * *
18755676 GAAATACCC-CTATAGGATAACATGACC
1 GAAATACCCTCGAT-GGGTAAAATGACT
* *
18755703 GTAATACCC-CTG-TAGGGTAAAATGACC
1 GAAATACCCTC-GAT-GGGTAAAATGACT
* *
18755730 GTAATACCCT-TATAGGGTAAAATGACT
1 GAAATACCCTCGAT-GGGTAAAATGACT
* *
18755757 GTAATGCCC-CTG-TAGGGTAAAATGACT
1 GAAATACCCTC-GAT-GGGTAAAATGACT
** *
18755784 CTAATACCC-CTATAGGGTAAAATGAC
1 GAAATACCCTCGAT-GGGTAAAATGAC
18755810 CATAATGCCC
Statistics
Matches: 200, Mismatches: 31, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
26 21 0.10
27 179 0.89
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATGACT
Found at i:18755627 original size:54 final size:54
Alignment explanation
Indices: 18755555--18755943 Score: 306
Period size: 54 Copynumber: 7.2 Consensus size: 54
18755545 ATACCCTCAA
** *
18755555 AGGGTAAAATGATTGAAATACCCTCGAT-GAGTAAAATGACTGAAATA-CCCTCG-
1 AGGGTAAAATGACCGAAATACCC-CTATAGAGTAAAATGACTGAAATACCCCT-GT
* * * * *
18755608 ATGGGTAAAATGACCGAAATTCCCCCATAGGGTAAAATGATTGAAATGCCCCTGT
1 A-GGGTAAAATGACCGAAATACCCCTATAGAGTAAAATGACTGAAATACCCCTGT
* * * *
18755663 AGGGTAGAAT-ACCGAAATACCCCTATAG-GATAACATGACCGTAATACCCCTGT
1 AGGGTAAAATGACCGAAATACCCCTATAGAG-TAAAATGACTGAAATACCCCTGT
* * * * *
18755716 AGGGTAAAATGACCGTAATACCCTTATAGGGTAAAATGACTGTAATGCCCCTGT
1 AGGGTAAAATGACCGAAATACCCCTATAGAGTAAAATGACTGAAATACCCCTGT
* * * * *
18755770 AGGGTAAAATGACTC-TAATACCCCTATAGGGTAAAATGAC-CATAATGCCCCTAT
1 AGGGTAAAATGAC-CGAAATACCCCTATAGAGTAAAATGACTGA-AATACCCCTGT
* * * * * * * * * *
18755824 AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGGCCGTAATGCCCTTGT
1 AGGGTAAAATGACCGAAATACCCCTATAGAGTAAAATGACTGAAATACCCCTGT
* * * * * * * **
18755878 AGGGTAAAATGACTGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCGTTGT
1 AGGGTAAAATGACCGAAATACCCCTATAGAGTAAAATGACTGAAATACCCCTGT
18755932 AGGGTAAAATGA
1 AGGGTAAAATGA
18755944 TCGTAATGCC
Statistics
Matches: 287, Mismatches: 38, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.00
53 48 0.17
54 231 0.80
55 7 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (54 bp):
AGGGTAAAATGACCGAAATACCCCTATAGAGTAAAATGACTGAAATACCCCTGT
Found at i:18755815 original size:27 final size:27
Alignment explanation
Indices: 18755610--18755954 Score: 397
Period size: 27 Copynumber: 12.8 Consensus size: 27
18755600 TACCCTCGAT
* * *
18755610 GGGTAAAATGACCGAAATTCCCCCATA
1 GGGTAAAATGACCGTAATGCCCCTATA
** * *
18755637 GGGTAAAATGATTGAAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
* * *
18755664 GGGTAGAAT-ACCGAAATACCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
* * * *
18755690 GGATAACATGACCGTAATACCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
* *
18755717 GGGTAAAATGACCGTAATACCCTTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
* *
18755744 GGGTAAAATGACTGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
*
18755771 GGGTAAAATGACTC-TAATACCCCTATA
1 GGGTAAAATGAC-CGTAATGCCCCTATA
*
18755798 GGGTAAAATGACCATAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
* *
18755825 GGGTAAAATGATCGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
* * *
18755852 GGGTAAAATGGCCGTAATGCCCTTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
*
18755879 GGGTAAAATGACTGTAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
** *
18755906 GGGTAAAATGACCGTAATGCCGTTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
*
18755933 GGGTAAAATGATCGTAATGCCC
1 GGGTAAAATGACCGTAATGCCC
18755955 TGGTGGGTAA
Statistics
Matches: 272, Mismatches: 43, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 20 0.07
27 252 0.93
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATGCCCCTATA
Found at i:18756069 original size:24 final size:23
Alignment explanation
Indices: 18756004--18756072 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
18755994 GATTGTTTTA
* *
18756004 TCTGTGTTTAAATGACTGATTTT
1 TCTGTGTTTTAATGACTGATTTG
* *
18756027 TCTGTGGTTGGT-ATAACTGATTTG
1 TCTGT-GTT-TTAATGACTGATTTG
18756051 TCTGTGATTTTAATGACTGATT
1 TCTGTG-TTTTAATGACTGATT
18756073 CTGAGCATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
23 7 0.19
24 29 0.81
ACGTcount: A:0.20, C:0.09, G:0.22, T:0.49
Consensus pattern (23 bp):
TCTGTGTTTTAATGACTGATTTG
Found at i:18756100 original size:16 final size:16
Alignment explanation
Indices: 18756081--18756124 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
18756071 TTCTGAGCAT
18756081 GACATTCTGCATACAC
1 GACATTCTGCATACAC
18756097 GACATTCTGCATACAC
1 GACATTCTGCATACAC
*
18756113 GACATACTGCAT
1 GACATTCTGCAT
18756125 GGGGTTGGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.25
Consensus pattern (16 bp):
GACATTCTGCATACAC
Found at i:18756190 original size:27 final size:27
Alignment explanation
Indices: 18756152--18756224 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
18756142 ATGGAGGAAG
18756152 TACTG-TACTGGTGGCTTTGCCACA-A
1 TACTGTTACTGGTGGCTTTGCCACATA
* *
18756177 TCACTGTTACTGGTGGCTTGGCCATATA
1 T-ACTGTTACTGGTGGCTTTGCCACATA
* *
18756205 TACTATTACTGGTTGCTTTG
1 TACTGTTACTGGTGGCTTTG
18756225 GTGCGATACT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 33 0.82
28 2 0.05
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTTGCCACATA
Found at i:18756306 original size:32 final size:32
Alignment explanation
Indices: 18756263--18756570 Score: 297
Period size: 32 Copynumber: 9.6 Consensus size: 32
18756253 ATGATGCTAT
*
18756263 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
*
18756295 TAATGGCTTTGTGCCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
* *
18756327 TGATGGCTTTGTGCCGATCATAGTACCATCAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
* *
18756359 TGATGGCTTTGTGCCGATCATAGTACCATCAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
* ***
18756391 TGATGGCTTTGTGCCGATCATATTAGAATTA-
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
* * *
18756422 TCGATGG-TTATGTGTCGATCAT-TTCACTGTTAC
1 T-GATGGCTT-TGTGCCGATCATAGT-ACCGTTAC
* * * *
18756455 TGATGGCTATGTACCGATCATA-TCACTGATAC
1 TGATGGCTTTGTGCCGATCATAGT-ACCGTTAC
*
18756487 TGATGGCTTTGTGCCGGTCAT-GTTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAG-TACCGTTAC
* * * *
18756519 TGATGGCTGTGTGTCGATTATA-T-CACTTCTAC
1 TGATGGCTTTGTGCCGATCATAGTAC-CGT-TAC
*
18756551 TGATGGCTTTGTGCCAATCA
1 TGATGGCTTTGTGCCGATCA
18756571 CATTTCTGTA
Statistics
Matches: 234, Mismatches: 31, Indels: 22
0.82 0.11 0.08
Matches are distributed among these distances:
30 1 0.00
31 8 0.03
32 222 0.95
33 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATAGTACCGTTAC
Found at i:18758796 original size:20 final size:21
Alignment explanation
Indices: 18758771--18758812 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
18758761 AAATAAAAGA
* *
18758771 TGGAAACGAGCT-CATTGAGC
1 TGGAAACAAGCTGAATTGAGC
18758791 TGGAAACAAGCTGAATTGAGC
1 TGGAAACAAGCTGAATTGAGC
18758812 T
1 T
18758813 CAACAAGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (21 bp):
TGGAAACAAGCTGAATTGAGC
Found at i:18760600 original size:21 final size:21
Alignment explanation
Indices: 18760576--18760648 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 21
18760566 TTATTGATAT
18760576 ATGATATGTTAACGTTAGTGA
1 ATGATATGTTAACGTTAGTGA
*
18760597 ATGAAATATTGTTTAACTGTTATGTTA
1 ATG--ATA-TG-TTAAC-GTTA-GTGA
* *
18760624 ATGGTATGTTAATGTTAGTGA
1 ATGATATGTTAACGTTAGTGA
18760645 ATGA
1 ATGA
18760649 AATATTGTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
21 9 0.22
22 4 0.10
23 7 0.17
24 4 0.10
25 7 0.17
26 4 0.10
27 6 0.15
ACGTcount: A:0.33, C:0.03, G:0.22, T:0.42
Consensus pattern (21 bp):
ATGATATGTTAACGTTAGTGA
Found at i:18760612 original size:25 final size:25
Alignment explanation
Indices: 18760584--18760661 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
18760574 ATATGATATG
18760584 TTAACGTTAGTGAATGAAATATTGT
1 TTAACGTTAGTGAATGAAATATTGT
* *
18760609 TTAACTGTTATGTTAATG--GTA-TG-
1 TTAAC-GTTA-GTGAATGAAATATTGT
*
18760632 TTAATGTTAGTGAATGAAATATTGT
1 TTAACGTTAGTGAATGAAATATTGT
18760657 TTAAC
1 TTAAC
18760662 TGTTTTGATT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
21 6 0.15
22 4 0.10
23 6 0.15
24 4 0.10
25 11 0.27
26 4 0.10
27 6 0.15
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (25 bp):
TTAACGTTAGTGAATGAAATATTGT
Found at i:18765164 original size:41 final size:41
Alignment explanation
Indices: 18765092--18765242 Score: 178
Period size: 41 Copynumber: 3.7 Consensus size: 41
18765082 AAATATGCCA
* * *
18765092 GCATAAAGCCTTCTAGGCACAAAG-TTAGATATGATACACCG
1 GCATGAAGCCTGCTAGGCACAAAGCCT-GATATGATACACCG
* * *
18765133 GCACGAAGCCTGCTAGGCATAAAGCCTGATATGGTACACCG
1 GCATGAAGCCTGCTAGGCACAAAGCCTGATATGATACACCG
* * * *
18765174 GCATGAAGCCTGCTAGGCATAAAGCCTGCTATAATTCACCG
1 GCATGAAGCCTGCTAGGCACAAAGCCTGATATGATACACCG
* *
18765215 GCATAAAGCCTGCTAGGCACAGAGCCTG
1 GCATGAAGCCTGCTAGGCACAAAGCCTG
18765243 TAACTGATAC
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
41 94 0.99
42 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (41 bp):
GCATGAAGCCTGCTAGGCACAAAGCCTGATATGATACACCG
Found at i:18765198 original size:16 final size:16
Alignment explanation
Indices: 18765173--18765204 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18765163 ATGGTACACC
*
18765173 GGCATGAAGCCTGCTA
1 GGCATAAAGCCTGCTA
18765189 GGCATAAAGCCTGCTA
1 GGCATAAAGCCTGCTA
18765205 TAATTCACCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.19
Consensus pattern (16 bp):
GGCATAAAGCCTGCTA
Found at i:18773889 original size:22 final size:22
Alignment explanation
Indices: 18773864--18773906 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
18773854 ATAAGGGGAA
18773864 TTGCTAACTATTGTCCTAAATT
1 TTGCTAACTATTGTCCTAAATT
*
18773886 TTGCTAACTATTTTCCTAAAT
1 TTGCTAACTATTGTCCTAAAT
18773907 GTTTTAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.47
Consensus pattern (22 bp):
TTGCTAACTATTGTCCTAAATT
Found at i:18775076 original size:27 final size:27
Alignment explanation
Indices: 18775030--18775497 Score: 479
Period size: 27 Copynumber: 17.3 Consensus size: 27
18775020 GGCCATAACA
*
18775030 GTCATTTTACTCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
*** *
18775057 GTCATTTTACCCAAAAAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCG
* * *
18775084 ATCATTTTACCCATCGAGGGCATTTCT
1 GTCATTTTACCCATCGAGGGTATTTCG
* * * * *
18775111 ATCATTTTAGCCACCGAGTGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCG
* *
18775138 ATCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCG
* ** *
18775165 ATCATTTTACCCATTAAGGGCATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
* *
18775192 GTTATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCG
* **
18775219 GTTATTTTACCCATCGAGGGTATTTTT
1 GTCATTTTACCCATCGAGGGTATTTCG
* * **
18775246 GCCATTTTACTCATCGAGCATATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
* *
18775273 ATCATTTTACCCATCGAGGGTATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCG
**
18775300 GTCATTTTACCCATCGAGGGTATTTTA
1 GTCATTTTACCCATCGAGGGTATTTCG
* * *
18775327 GTTATTTTACCCTTCGAGGGTATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCG
* *
18775354 GTTATTTTAGCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
* * * *
18775381 GTCATTTTACACATTGATGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCG
* * *
18775408 GTCATTTTACCTATCGAGGGCATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCG
* * *
18775435 GTCATTTTACCTATCGAGAGCATGTT-G
1 GTCATTTTACCCATCGAGGGTAT-TTCG
* *
18775462 ATCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCG
18775489 GTCATTTTA
1 GTCATTTTA
18775498 GAATTCGACC
Statistics
Matches: 367, Mismatches: 72, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 363 0.99
28 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCATCGAGGGTATTTCG
Found at i:18779462 original size:9 final size:9
Alignment explanation
Indices: 18779444--18779482 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
18779434 AATTTGGGCC
*
18779444 ATTACACGA
1 ATTACCCGA
18779453 ATTACCCGA
1 ATTACCCGA
*
18779462 ATTGCCCGA
1 ATTACCCGA
*
18779471 ATTATCCGA
1 ATTACCCGA
18779480 ATT
1 ATT
18779483 GAATCACAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (9 bp):
ATTACCCGA
Found at i:18779513 original size:17 final size:17
Alignment explanation
Indices: 18779491--18779587 Score: 59
Period size: 17 Copynumber: 5.4 Consensus size: 17
18779481 TTGAATCACA
18779491 ACATAATTAAAAACATT
1 ACATAATTAAAAACATT
** * *
18779508 ACATAAATCTTTGAATCACT
1 ACAT-AA--TTAAAAACATT
18779528 ACATAATTAAAAACATT
1 ACATAATTAAAAACATT
* ** * *
18779545 AGATAAGTCTTTGAATCACT
1 ACATAA---TTAAAAACATT
18779565 ACATAATTAAAAACATT
1 ACATAATTAAAAACATT
18779582 ACATAA
1 ACATAA
18779588 GTATTGAAAT
Statistics
Matches: 56, Mismatches: 18, Indels: 12
0.65 0.21 0.14
Matches are distributed among these distances:
17 29 0.52
18 2 0.04
19 2 0.04
20 23 0.41
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.31
Consensus pattern (17 bp):
ACATAATTAAAAACATT
Found at i:18779588 original size:37 final size:37
Alignment explanation
Indices: 18779481--18779589 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
18779471 ATTATCCGAA
* *
18779481 TTGAATCACAACATAATTAAAAACATTACATAAATCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
18779518 TTGAATCACTACATAATTAAAAACATTAGATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
18779555 TTGAATCACTACATAATTAAAAACATTACATAAGT
1 TTGAATCACTACATAATTAAAAACATTACATAAGT
18779590 ATTGAAATTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.31
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:18783199 original size:3 final size:3
Alignment explanation
Indices: 18783191--18783220 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
18783181 ATTTCTCCAA
*
18783191 TTC TTC TTC TTC TTC TTC TTC TTC GTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
18783221 GTCAAGGCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:18788550 original size:38 final size:38
Alignment explanation
Indices: 18788489--18788561 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
18788479 ACCTTTTAAC
* *
18788489 TTTTCCTCAGAAGTGCAGTCGAGGTCATCCATTATAAA
1 TTTTCCTCAAAAGTGCAATCGAGGTCATCCATTATAAA
*
18788527 TTTTGCTCAAAAGTGCAATCGAGGTCATCCATTAT
1 TTTTCCTCAAAAGTGCAATCGAGGTCATCCATTAT
18788562 TCTCTCCGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (38 bp):
TTTTCCTCAAAAGTGCAATCGAGGTCATCCATTATAAA
Found at i:18789118 original size:26 final size:26
Alignment explanation
Indices: 18789080--18789137 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
18789070 ATAGTTTCCT
*
18789080 ACAGTAACACAGCAAAGCTGCTAGTA
1 ACAGTAACACAGCAAAGCTGCCAGTA
**
18789106 ACAGTAATGCAGCAAAGCTGCCAGTA
1 ACAGTAACACAGCAAAGCTGCCAGTA
18789132 ACAGTA
1 ACAGTA
18789138 TATGTGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (26 bp):
ACAGTAACACAGCAAAGCTGCCAGTA
Found at i:18789272 original size:25 final size:26
Alignment explanation
Indices: 18789239--18789299 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
18789229 TCATACTTAG
* * *
18789239 TAACGGTCATATATATCATAAAGCAA
1 TAACAGTCATACATAACATAAAGCAA
* *
18789265 -ATCAGTCATACATAACATAAGGCAA
1 TAACAGTCATACATAACATAAAGCAA
18789290 TAACAGTCAT
1 TAACAGTCAT
18789300 TTTACTCGTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25
Consensus pattern (26 bp):
TAACAGTCATACATAACATAAAGCAA
Found at i:18789338 original size:27 final size:26
Alignment explanation
Indices: 18789295--18789762 Score: 396
Period size: 27 Copynumber: 17.3 Consensus size: 26
18789285 GGCAATAACA
* *
18789295 GTCATTTTACTCGTCGAGGGTATTCTG
1 GTCATTTTACCCATCGAGGGTATT-TG
*
18789322 GTCATTTTACCCATCGACGGTATTTAG
1 GTCATTTTACCCATCGAGGGTATTT-G
* **
18789349 GTTATTTTACCCATAAAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTT-G
* * *
18789376 GTCATTTTACCCATTGATGGCATTTTG
1 GTCATTTTACCCATCGAGGGTA-TTTG
* *
18789403 GTCATTTTACCTATCGAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTT-G
* * *
18789430 ATCATTTTACCCATCGAGGGAATTTTA
1 GTCATTTTACCCATCGAGGGTA-TTTG
* *
18789457 GTCTTTTTACCCATCGAGGGCATTTCG
1 GTCATTTTACCCATCGAGGGTATTT-G
* * *
18789484 ATCATTTTACCCCTTGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTT-G
*
18789511 GTCATTTTACCCATCGAGGGCATTTTG
1 GTCATTTTACCCATCGAGGGTA-TTTG
* * *
18789538 ATCATTTTACCCATCGAAGGCATTTTG
1 GTCATTTTACCCATCGAGGGTA-TTTG
* * *
18789565 GTCATTTTACCCATTGAGGGCATTTTA
1 GTCATTTTACCCATCGAGGGTA-TTTG
*
18789592 GTTATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTT-G
* *
18789619 ATCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCATCGAGGGTATTT-G
* *
18789646 GTCATTTTACCCATCAAGGGCATTTTG
1 GTCATTTTACCCATCGAGGGTA-TTTG
** **
18789673 GTCATTTTACCCATCGAGGACAATTCA
1 GTCATTTTACCCATCGAGG-GTATTTG
* ** * *
18789700 ATCATTTTACCCATCGATTGCATTTTA
1 GTCATTTTACCCATCGAGGGTA-TTTG
* *
18789727 GTCATTTTAACTATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTT-G
*
18789754 ATCATTTTA
1 GTCATTTTA
18789763 GGCCCAATTC
Statistics
Matches: 360, Mismatches: 70, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
26 14 0.04
27 333 0.93
28 13 0.04
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCCATCGAGGGTATTTG
Found at i:18789369 original size:54 final size:54
Alignment explanation
Indices: 18789295--18789762 Score: 497
Period size: 54 Copynumber: 8.7 Consensus size: 54
18789285 GGCAATAACA
* * * * *
18789295 GTCATTTTACTCGTCGAGGGTA-TTCTGGTCATTTTACCCATCGACGGTATTTAG
1 GTCATTTTACCCATCGAGGGTATTTC-GGTCATTTTACCCATCGAGGGCATTTTG
* ** * *
18789349 GTTATTTTACCCATAAAGGGTATTTCGGTCATTTTACCCATTGATGGCATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
* ** * *
18789403 GTCATTTTACCTATCGAGGGTATTTCAATCATTTTACCCATCGAGGGAATTTTA
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
* * * * * * *
18789457 GTCTTTTTACCCATCGAGGGCATTTCGATCATTTTACCCCTTGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
* * * *
18789511 GTCATTTTACCCATCGAGGGCATTTTGATCATTTTACCCATCGAAGGCATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
* * ** * * *
18789565 GTCATTTTACCCATTGAGGGCATTTTAGTTATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
* * *
18789619 ATCATTTTACCCATCGAGGGTATTTCAGTCATTTTACCCATCAAGGGCATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
** * ** ** *
18789673 GTCATTTTACCCATCGAGGACAATTCAATCATTTTACCCATCGATTGCATTTTA
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
* * *
18789727 GTCATTTTAACTATCGAGGGTATTTCGATCATTTTA
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTA
18789763 GGCCCAATTC
Statistics
Matches: 348, Mismatches: 65, Indels: 2
0.84 0.16 0.00
Matches are distributed among these distances:
54 345 0.99
55 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (54 bp):
GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGCATTTTG
Found at i:18789437 original size:81 final size:81
Alignment explanation
Indices: 18789296--18789762 Score: 490
Period size: 81 Copynumber: 5.8 Consensus size: 81
18789286 GCAATAACAG
* * * * * *
18789296 TCATTTTACTCGTCGAGGGTATTCTGGTCATTTTACCCATCGACGGTATTT-AGGTTATTTTACC
1 TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCA-GTCATTTTACC
** * *
18789360 CATAAAGGGTATTTCGG
65 CATCGAGGGCATTTCGA
* * * *
18789377 TCATTTTACCCATTGATGGCATTTTGGTCATTTTACCTATCGAGGGTATTTCAATCATTTTACCC
1 TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCAGTCATTTTACCC
* *
18789442 ATCGAGGGAATTT-TA
66 ATCGAGGGCATTTCGA
* * * * * *
18789457 GTCTTTTTACCCATCGAGGGCATTTCGATCATTTTACCCCTTGAGGGTATTTCGGTCATTTTACC
1 -TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCAGTCATTTTACC
*
18789522 CATCGAGGGCATTTTGA
65 CATCGAGGGCATTTCGA
* * * * *
18789539 TCATTTTACCCATCGAAGGCATTTTGGTCATTTTACCCATTGAGGGCATTTTAGTTATTTTACCC
1 TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCAGTCATTTTACCC
*
18789604 ATCGAGGGTATTTCGA
66 ATCGAGGGCATTTCGA
* ** * * **
18789620 TCATTTTACCCATCGAGGGTATTTCAGTCATTTTACCCATCAAGGGCATTTTGGTCATTTTACCC
1 TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCAGTCATTTTACCC
* * *
18789685 ATCGAGGACAATTCAA
66 ATCGAGGGCATTTCGA
** * * *
18789701 TCATTTTACCCATCGATTGCATTTTAGTCATTTTAACTATCGAGGGTATTTC-GATCATTTTA
1 TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCAG-TCATTTTA
18789763 GGCCCAATTC
Statistics
Matches: 323, Mismatches: 59, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.00
81 320 0.99
82 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (81 bp):
TCATTTTACCCATCGAGGGCATTTTGGTCATTTTACCCATCGAGGGTATTTCAGTCATTTTACCC
ATCGAGGGCATTTCGA
Found at i:18821447 original size:34 final size:34
Alignment explanation
Indices: 18821409--18821474 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
18821399 ATGATAGAGT
*
18821409 ACATCTCAAGCAGTCATCTGAATGACACAACAGC
1 ACATCTCAAGCAGTCATATGAATGACACAACAGC
* *
18821443 ACATCTCAAGCAGTCGTATGGATGACACAACA
1 ACATCTCAAGCAGTCATATGAATGACACAACA
18821475 TCTGATCTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.18
Consensus pattern (34 bp):
ACATCTCAAGCAGTCATATGAATGACACAACAGC
Found at i:18832077 original size:50 final size:50
Alignment explanation
Indices: 18831977--18832268 Score: 363
Period size: 50 Copynumber: 5.9 Consensus size: 50
18831967 TCTTGTACTA
* * * * * ** * *
18831977 CCAATGCCATATCCCAGATATGGTCTTGCATGAGAGTTCTCATATAGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * * * * *
18832027 CCCATGCCATGTCCCAGACATGATCTTACAGGGGACCTCTTATCTTGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * *
18832077 CAAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCTGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * *
18832127 CCAACACTATGTCCCAGACATGGTCTTACATGGGACCCCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
*
18832177 CCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
*
18832227 CCAACGCCATGTCCCAAACATGGTCTTACATGGGA--TCTCATC
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATC
18832269 CTCTTAATGT
Statistics
Matches: 211, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
48 7 0.03
50 204 0.97
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (50 bp):
CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
Found at i:18835216 original size:41 final size:41
Alignment explanation
Indices: 18835164--18835249 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
18835154 CAAGTTATCA
** *
18835164 CATATCGATGCCTCTATCCCAGACAGGGTCTTATACG-AAT
1 CATATCGATGCCAATATCCCAGACAGGGTCTTACACGAAAT
* * *
18835204 CATATACGATGCCAATGTCCCAGACATGTTCTTACACGAAAT
1 CATAT-CGATGCCAATATCCCAGACAGGGTCTTACACGAAAT
18835246 CATA
1 CATA
18835250 CCTTGAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 5 0.13
41 26 0.68
42 7 0.18
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (41 bp):
CATATCGATGCCAATATCCCAGACAGGGTCTTACACGAAAT
Found at i:18839422 original size:39 final size:39
Alignment explanation
Indices: 18839379--18839552 Score: 154
Period size: 39 Copynumber: 4.5 Consensus size: 39
18839369 ATTCACTTTT
* *
18839379 AAGCATATATCCTATTACACATATAATCACCTAACATTC
1 AAGCATATATCCTAATACACATATAATCACATAACATTC
* * * * ** *
18839418 AAGCATATATCATGATATACATTTAATCTTATAACATTT
1 AAGCATATATCCTAATACACATATAATCACATAACATTC
** * *
18839457 AAGCATATATCAC-AACCCTCGTATAATCACATAACATTC
1 AAGCATATATC-CTAATACACATATAATCACATAACATTC
* * * *
18839496 AAGCATATA-CCACAATATACATATAATCTCATAACATTT
1 AAGCATATATCC-TAATACACATATAATCACATAACATTC
*
18839535 AAGCATATATCATAATAC
1 AAGCATATATCCTAATAC
18839553 TCAAAAACAT
Statistics
Matches: 101, Mismatches: 30, Indels: 8
0.73 0.22 0.06
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 98 0.97
40 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (39 bp):
AAGCATATATCCTAATACACATATAATCACATAACATTC
Found at i:18839466 original size:78 final size:78
Alignment explanation
Indices: 18839376--18839546 Score: 227
Period size: 78 Copynumber: 2.2 Consensus size: 78
18839366 CATATTCACT
** * * **
18839376 TTTAAGCATATATC-CTATTACACATATAATCACCTAACATTCAAGCATATATCATGATATACAT
1 TTTAAGCATATATCAC-AACACACATATAATCACATAACATTCAAGCATATACCACAATATACAT
* *
18839440 TTAATCTTATAACA
65 ATAATCTCATAACA
* * *
18839454 TTTAAGCATATATCACAACCCTCGTATAATCACATAACATTCAAGCATATACCACAATATACATA
1 TTTAAGCATATATCACAACACACATATAATCACATAACATTCAAGCATATACCACAATATACATA
18839519 TAATCTCATAACA
66 TAATCTCATAACA
18839532 TTTAAGCATATATCA
1 TTTAAGCATATATCA
18839547 TAATACTCAA
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 80 0.99
79 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (78 bp):
TTTAAGCATATATCACAACACACATATAATCACATAACATTCAAGCATATACCACAATATACATA
TAATCTCATAACA
Found at i:18840344 original size:6 final size:6
Alignment explanation
Indices: 18840320--18840363 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
18840310 TGCCTTCTTC
* * *
18840320 TCCCCTT TCCCCT TTCCCT TCCCCT TCCCTT TTCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
18840364 AGATTGCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (6 bp):
TCCCCT
Found at i:18840347 original size:18 final size:18
Alignment explanation
Indices: 18840320--18840363 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
18840310 TGCCTTCTTC
18840320 TCCCCTTTCCCCTTTCCCT
1 TCCCC-TTCCCCTTTCCCT
*
18840339 TCCCCTTCCCTTTTCCCT
1 TCCCCTTCCCCTTTCCCT
18840357 TCCCCTT
1 TCCCCTT
18840364 AGATTGCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (18 bp):
TCCCCTTCCCCTTTCCCT
Found at i:18840485 original size:25 final size:27
Alignment explanation
Indices: 18840423--18840485 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 27
18840413 CAGGTAAGGC
18840423 TCCTTCTTCTTCTTCTTCCATTCTTCAT
1 TCCTTC-TCTTCTTCTTCCATTCTTCAT
**
18840451 TCCTT-T-TTCTTCTTCTGTTCTTCA-
1 TCCTTCTCTTCTTCTTCCATTCTTCAT
18840475 T-CTTCTCTTCT
1 TCCTTCTCTTCT
18840486 CAGCATATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
23 3 0.10
24 2 0.06
25 20 0.65
26 1 0.03
28 5 0.16
ACGTcount: A:0.05, C:0.33, G:0.02, T:0.60
Consensus pattern (27 bp):
TCCTTCTCTTCTTCTTCCATTCTTCAT
Found at i:18840679 original size:11 final size:11
Alignment explanation
Indices: 18840663--18840688 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
18840653 TTGCTGGATG
18840663 ATATTTTGGTT
1 ATATTTTGGTT
18840674 ATATTTTGGTT
1 ATATTTTGGTT
18840685 ATAT
1 ATAT
18840689 ACAGATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (11 bp):
ATATTTTGGTT
Found at i:18842237 original size:22 final size:20
Alignment explanation
Indices: 18842194--18842232 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
18842184 TAATTTAAAA
18842194 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
18842214 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
18842233 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:18842356 original size:20 final size:20
Alignment explanation
Indices: 18842331--18842370 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
18842321 AATATTTTCC
*
18842331 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
18842351 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
18842371 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:18842376 original size:34 final size:34
Alignment explanation
Indices: 18842319--18842384 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
18842309 CAAACACCAG
*
18842319 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
18842354 AAAACATTTTCCAG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
18842385 ACATCTTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:18845735 original size:39 final size:39
Alignment explanation
Indices: 18845607--18845740 Score: 164
Period size: 39 Copynumber: 3.4 Consensus size: 39
18845597 ATTCACTTTT
* * * *
18845607 AAGCATATATC-CTATTACACATATAACCACCTAACATTC
1 AAGCATATATCAC-AATATACATATAATCACATAACATTC
*
18845646 AAGCATAAATCACAATACT-CATATAATCACATAACATTC
1 AAGCATATATCACAATA-TACATATAATCACATAACATTC
* * *
18845685 AAGCATATATCATAATATACATATAATCTCATAACATTT
1 AAGCATATATCACAATATACATATAATCACATAACATTC
18845724 AAGCATATATCACAATA
1 AAGCATATATCACAATA
18845741 CTGAAAAACA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 80 0.98
40 1 0.01
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATATACATATAATCACATAACATTC
Found at i:18855472 original size:25 final size:24
Alignment explanation
Indices: 18855430--18855553 Score: 119
Period size: 25 Copynumber: 5.0 Consensus size: 24
18855420 GTACATGTAT
*
18855430 GCTCATACGAGTTCT-AAATCGGTAT
1 GCTCATACGAG--CTGAAATCGGTAA
* *
18855455 GCTCTTACGAGCTGTAAAT-AGTAA
1 GCTCATACGAGCTG-AAATCGGTAA
18855479 GCTCATACGAGCTGAATATCGGTAA
1 GCTCATACGAGCTGAA-ATCGGTAA
*
18855504 GCTCATACGAGCTGAATATCAGTAA
1 GCTCATACGAGCTGAA-ATCGGTAA
*
18855529 GCTC-TCTCGAGCTGAGAATCGGTAA
1 GCTCAT-ACGAGCTGA-AATCGGTAA
18855554 CCCTAATGAC
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
23 4 0.05
24 19 0.22
25 61 0.72
26 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (24 bp):
GCTCATACGAGCTGAAATCGGTAA
Found at i:18855489 original size:49 final size:50
Alignment explanation
Indices: 18855430--18855553 Score: 134
Period size: 49 Copynumber: 2.5 Consensus size: 50
18855420 GTACATGTAT
* *
18855430 GCTCATACGAGTTCT-AA-ATCGGTATGCTCTTACGAGCTGTAA-AT-AGTAA
1 GCTCATACGAG--CTGAATATCGGTAAGCTCATACGAGCTG-AATATCAGTAA
18855479 GCTCATACGAGCTGAATATCGGTAAGCTCATACGAGCTGAATATCAGTAA
1 GCTCATACGAGCTGAATATCGGTAAGCTCATACGAGCTGAATATCAGTAA
*
18855529 GCTC-TCTCGAGCTGAGA-ATCGGTAA
1 GCTCAT-ACGAGCTGA-ATATCGGTAA
18855554 CCCTAATGAC
Statistics
Matches: 66, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
47 2 0.03
48 4 0.06
49 34 0.52
50 25 0.38
51 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (50 bp):
GCTCATACGAGCTGAATATCGGTAAGCTCATACGAGCTGAATATCAGTAA
Found at i:18866287 original size:49 final size:50
Alignment explanation
Indices: 18866093--18866383 Score: 329
Period size: 50 Copynumber: 5.7 Consensus size: 50
18866083 GGTAAAGGGA
*
18866093 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCCTTGAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGG
* *
18866149 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGACGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
18866199 TCCCATGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * **
18866249 TCCC-CGTAAGACCATGTCTGGGACATGGCA-TGGACACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGAGAGG
* * * * * **
18866298 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA--GTACATGATATA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
*
18866347 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
18866384 TGTTATTATC
Statistics
Matches: 208, Mismatches: 23, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
48 4 0.02
49 78 0.38
50 81 0.39
51 3 0.01
53 3 0.01
55 2 0.01
56 37 0.18
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:18866302 original size:99 final size:100
Alignment explanation
Indices: 18866093--18866383 Score: 338
Period size: 99 Copynumber: 2.9 Consensus size: 100
18866083 GGTAAAGGGA
18866093 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCCTTGAGATCATGAGAGGTCCCATGTA
1 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGGTCCCATGTA
* **
18866158 AGACCATGTTTGGGACATGGCATTGGCACCGAGACGAGAGG
60 AGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAAC
* * * *
18866199 TCCCATGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGATGAGAGGTCCC-CGTAAGACCA
1 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
* *
18866263 TGTCTGGGACATGGCA-TGGACACCGATATGAGAAC
66 TGTCTGGGACATGGCATTGG-CACCGAGACGAGAAC
* * * * **
18866298 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA--GTACATGATATATCCCATGTAAGACC
1 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCG-AGATGAGAGGTCCCATGTAAGACC
*
18866361 ATGTCTGGGACATGGCTTTGGCA
65 ATGTCTGGGACATGGCATTGGCA
18866384 TGTTATTATC
Statistics
Matches: 161, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
97 1 0.01
98 13 0.08
99 93 0.58
100 15 0.09
103 3 0.02
105 2 0.01
106 34 0.21
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (100 bp):
TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
TGTCTGGGACATGGCATTGGCACCGAGACGAGAAC
Found at i:18870298 original size:15 final size:15
Alignment explanation
Indices: 18870274--18870303 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
18870264 GGTTTAACGA
*
18870274 AATTTTATTATAATT
1 AATTTAATTATAATT
18870289 AATTTAATTATAATT
1 AATTTAATTATAATT
18870304 TTCGGTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AATTTAATTATAATT
Found at i:18880685 original size:48 final size:47
Alignment explanation
Indices: 18880614--18880711 Score: 187
Period size: 48 Copynumber: 2.1 Consensus size: 47
18880604 AAATGATCAC
18880614 ATGTGTGGCATGGACTGTGTGTAGGCCACTTATGTGAAAGTGAAAGTG
1 ATGTGTGGCATGGACTGTGTGTAGGCCAC-TATGTGAAAGTGAAAGTG
18880662 ATGTGTGGCATGGACTGTGTGTAGGCCACTATGTGAAAGTGAAAGTG
1 ATGTGTGGCATGGACTGTGTGTAGGCCACTATGTGAAAGTGAAAGTG
18880709 ATG
1 ATG
18880712 GTCACGTGTG
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 21 0.42
48 29 0.58
ACGTcount: A:0.26, C:0.10, G:0.36, T:0.29
Consensus pattern (47 bp):
ATGTGTGGCATGGACTGTGTGTAGGCCACTATGTGAAAGTGAAAGTG
Found at i:18880768 original size:51 final size:50
Alignment explanation
Indices: 18880713--18880847 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 50
18880703 AAAGTGATGG
18880713 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCT-TCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAG-TAT-GA
* * * * *
18880764 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-ATGA
* *
18880815 TCACATGTGTAGTACTATGTGTAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
18880848 TGAACTGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 1 0.01
51 72 0.97
52 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTATGA
Found at i:18881094 original size:16 final size:16
Alignment explanation
Indices: 18881073--18881104 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18881063 TGATTGAAAG
*
18881073 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
18881089 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
18881105 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:18891570 original size:101 final size:101
Alignment explanation
Indices: 18891390--18891580 Score: 251
Period size: 101 Copynumber: 1.9 Consensus size: 101
18891380 TAGGTTATAT
* * **
18891390 AATCGACTAAATTGTAGCTCTGATACCACTAAATGTAACACCTCTAACCCGTTTCCATCGTTAGA
1 AATCAACTAAATTGTAGCTCTGATACCACTAAATGTAACACCTCTAACCCGTATCCATCGCCAGA
* * *
18891455 ATAGGATTATAAAGCATTACTGCAATTCAGTTCGAG
66 AAAAGATTATAAAGCATTACCGCAATTCAGTTCGAG
* * * *
18891491 AATCAACTAAATTGTAGCTTTGATACCACTAGATGTATCATCC-CTAACCC-TCATCCATTGCCA
1 AATCAACTAAATTGTAGCTCTGATACCACTAAATGTAACA-CCTCTAACCCGT-ATCCATCGCCA
18891554 GAAAAAGATTATAAAGCATTACCGCAA
64 GAAAAAGATTATAAAGCATTACCGCAA
18891581 AATCGTAACT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
100 1 0.01
101 74 0.96
102 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (101 bp):
AATCAACTAAATTGTAGCTCTGATACCACTAAATGTAACACCTCTAACCCGTATCCATCGCCAGA
AAAAGATTATAAAGCATTACCGCAATTCAGTTCGAG
Found at i:18901764 original size:39 final size:38
Alignment explanation
Indices: 18901720--18901793 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
18901710 TCCCAGACTT
* * *
18901720 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCTAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCTAG
**
18901759 GGTCTTACACGAAATCGTATACGATGCCAATGTCC
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCC
18901794 CAGACATGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
38 13 0.43
39 17 0.57
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (38 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCTAG
Found at i:18901838 original size:44 final size:42
Alignment explanation
Indices: 18901701--18901853 Score: 122
Period size: 44 Copynumber: 3.6 Consensus size: 42
18901691 AGCTCTTAAA
*
18901701 ATGCCAACGTCCCAGACTTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGAC-TGGTCTTACATGTAAATCTAA-ATCG
* * *
18901744 ATGCC-ACTGTCCTAG---GGTCTTACACG-AAATCGTATA-CG
1 ATGCCAAC-GTCCCAGACTGGTCTTACATGTAAATC-TAAATCG
*
18901782 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGAC-TGGTCTTACATGTAAATCT-AAATCG
* * *
18901826 ACGCCAACGTCCCATACGTGATCTTACA
1 ATGCCAACGTCCCAGAC-TGGTCTTACA
18901854 CGATAACACA
Statistics
Matches: 86, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
38 13 0.15
39 16 0.19
40 1 0.01
42 13 0.15
43 18 0.21
44 25 0.29
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACTGGTCTTACATGTAAATCTAAATCG
Found at i:18904263 original size:42 final size:41
Alignment explanation
Indices: 18904214--18904345 Score: 156
Period size: 42 Copynumber: 3.1 Consensus size: 41
18904204 ACTCCTGAGG
* *
18904214 TGTGATTTCATGTAAGACCATGTCTCGGACATTGGCATCGTA
1 TGTGATTTCATGTAAGACCATATCTGGGACA-TGGCATCGTA
* * *
18904256 TATGATTTCATATAAGACCCTATCTGGGACAGTGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGACA-TGGCATCG-TA
** * *
18904299 TGTGATAACATGTAAGACCATATCTGGGATATGGCATTGTA
1 TGTGATTTCATGTAAGACCATATCTGGGACATGGCATCGTA
18904340 TGTGAT
1 TGTGAT
18904346 ATATGTGTTT
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 8 0.11
42 41 0.54
43 27 0.36
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (41 bp):
TGTGATTTCATGTAAGACCATATCTGGGACATGGCATCGTA
Found at i:18910663 original size:40 final size:40
Alignment explanation
Indices: 18910608--18910687 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
18910598 CCAAGCACCT
*
18910608 TTGTAAAAATGTCAGCCAACTGAATGGAGGTCGGAACATA
1 TTGTAAAAATGTCAGCCAACTGAATGGAGGTCGAAACATA
18910648 TTGTAAAAATGTCAGCCAACTGAATGGAGGTCGAAACATA
1 TTGTAAAAATGTCAGCCAACTGAATGGAGGTCGAAACATA
18910688 AGAAGGTGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (40 bp):
TTGTAAAAATGTCAGCCAACTGAATGGAGGTCGAAACATA
Found at i:18912217 original size:9 final size:9
Alignment explanation
Indices: 18912203--18912228 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18912193 ATTCATTAAT
18912203 TTTTAGTTA
1 TTTTAGTTA
18912212 TTTTAGTTA
1 TTTTAGTTA
18912221 TTTTAGTT
1 TTTTAGTT
18912229 TGTGTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:18912507 original size:27 final size:27
Alignment explanation
Indices: 18912456--18912507 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
18912446 CTCATCTTAG
** *
18912456 TTTAATTAATAAGTGTTTTTGTTAAAC
1 TTTAATTAATAAGTGTTGCTCTTAAAC
*
18912483 TTTATTTAATAAGTGTTGCTCTTAA
1 TTTAATTAATAAGTGTTGCTCTTAA
18912508 TTAATCTAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.52
Consensus pattern (27 bp):
TTTAATTAATAAGTGTTGCTCTTAAAC
Found at i:18913763 original size:11 final size:11
Alignment explanation
Indices: 18913747--18913773 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
18913737 TAAGTTAGTG
18913747 AAAAAAATTCA
1 AAAAAAATTCA
18913758 AAAAAAATTCA
1 AAAAAAATTCA
18913769 AAAAA
1 AAAAA
18913774 GAAAATTCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:18915811 original size:11 final size:11
Alignment explanation
Indices: 18915795--18915819 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18915785 CTTTGTTATT
18915795 TTGGATCATTA
1 TTGGATCATTA
18915806 TTGGATCATTA
1 TTGGATCATTA
18915817 TTG
1 TTG
18915820 AAAGCAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (11 bp):
TTGGATCATTA
Found at i:18917014 original size:23 final size:21
Alignment explanation
Indices: 18916968--18917019 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
18916958 TGTTAATATG
*
18916968 TGTGTTTAATAAGTGCTTACA
1 TGTGTTTAATAAGTGCTTAAA
18916989 TGTGTTTAATAAGCT-CATTTAAA
1 TGTGTTTAATAAG-TGC--TTAAA
18917012 TGTGTTTA
1 TGTGTTTA
18917020 TTGTAGGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 14 0.52
22 1 0.04
23 12 0.44
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (21 bp):
TGTGTTTAATAAGTGCTTAAA
Found at i:18920787 original size:17 final size:18
Alignment explanation
Indices: 18920758--18920796 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
18920748 TTCTTGATAA
18920758 AAAATCTTAAATAA-TTT
1 AAAATCTTAAATAATTTT
18920775 AAAATACTT-AATAATTTT
1 AAAAT-CTTAAATAATTTT
18920793 AAAA
1 AAAA
18920797 ATTAGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATCTTAAATAATTTT
Found at i:18923168 original size:25 final size:25
Alignment explanation
Indices: 18923113--18923196 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 25
18923103 AGCTGTAAAC
* * *
18923113 GGTAAACTCCTCCAAGCTGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAT
18923138 GGTAAGCTCCTCCGAGCTGAATAAT
1 GGTAAGCTCCTCCGAGCTGAATAAT
* * *
18923163 GGTAAGCTCATACGAGCTGAGT-AT
1 GGTAAGCTCCTCCGAGCTGAATAAT
18923187 CGGTAAGCTC
1 -GGTAAGCTC
18923197 ATAGGAGTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 2 0.04
25 50 0.96
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.23
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAT
Found at i:18923197 original size:25 final size:25
Alignment explanation
Indices: 18923127--18923217 Score: 103
Period size: 25 Copynumber: 3.6 Consensus size: 25
18923117 AACTCCTCCA
* * *
18923127 AGCTGAATAACGGTAAGCTCCTCCG
1 AGCTGAATATCGGTAAGCTCATACG
18923152 AGCTGAATAAT-GGTAAGCTCATACG
1 AGCTGAAT-ATCGGTAAGCTCATACG
* *
18923177 AGCTGAGTATCGGTAAGCTCATAGG
1 AGCTGAATATCGGTAAGCTCATACG
* *
18923202 AGTTGAGTATCGGTAA
1 AGCTGAATATCGGTAA
18923218 CCCATTTGAC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.03
25 55 0.95
26 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (25 bp):
AGCTGAATATCGGTAAGCTCATACG
Found at i:18930957 original size:25 final size:25
Alignment explanation
Indices: 18930868--18930950 Score: 114
Period size: 25 Copynumber: 3.3 Consensus size: 25
18930858 GCTGTAAACG
*
18930868 GTAAGCTCCTTCGACCTAAATAACA
1 GTAAGCTCCTTCGAGCTAAATAACA
* * *
18930893 GTAAACTCCTCCGAGCTGAATAACA
1 GTAAGCTCCTTCGAGCTAAATAACA
18930918 GTAAGCTCCTTCGAGCTAAATAA-A
1 GTAAGCTCCTTCGAGCTAAATAACA
18930942 GGTAAGCTC
1 -GTAAGCTC
18930951 ATACGAGTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 1 0.02
25 49 0.98
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (25 bp):
GTAAGCTCCTTCGAGCTAAATAACA
Found at i:18930972 original size:50 final size:50
Alignment explanation
Indices: 18930849--18930975 Score: 141
Period size: 50 Copynumber: 2.6 Consensus size: 50
18930839 TACATGTATG
* *
18930849 CTCATACAAGCTGTA-AACGGTAAGCTCCTTCGACCTAAATAACAGTAAA
1 CTCATACGAGCTGAATAACGGTAAGCTCCTTCGACCTAAATAACAGTAAA
* * * * *
18930898 CTCCTCCGAGCTGAATAACAGTAAGCTCCTTCGAGCTAAATAA-AGGTAAG
1 CTCATACGAGCTGAATAACGGTAAGCTCCTTCGACCTAAATAACA-GTAAA
* * *
18930948 CTCATACGAGTTGAGTATCGGTAAGCTC
1 CTCATACGAGCTGAATAACGGTAAGCTC
18930976 ATAATAGCTG
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
49 12 0.19
50 51 0.81
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (50 bp):
CTCATACGAGCTGAATAACGGTAAGCTCCTTCGACCTAAATAACAGTAAA
Found at i:18930987 original size:25 final size:25
Alignment explanation
Indices: 18930942--18930990 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
18930932 GCTAAATAAA
* *
18930942 GGTAAGCTCATACGAGTTGAGTATC
1 GGTAAGCTCATAAGAGCTGAGTATC
*
18930967 GGTAAGCTCATAATAGCTGAGTAT
1 GGTAAGCTCATAAGAGCTGAGTAT
18930991 TGATAACCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (25 bp):
GGTAAGCTCATAAGAGCTGAGTATC
Found at i:18932610 original size:42 final size:41
Alignment explanation
Indices: 18932555--18932633 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 41
18932545 ATGGCCAAGC
18932555 CACACACCCGTGTGCTAGGCAGTGTAACCTTCGAAATGGCCT
1 CACACACCCGTGTGCTAGGCA-TGTAACCTTCGAAATGGCCT
* * * *
18932597 CACACGCCTGTGTGCTAGGCATGTAACTTTTGAAATG
1 CACACACCCGTGTGCTAGGCATGTAACCTTCGAAATG
18932634 CAACCTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 14 0.42
42 19 0.58
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (41 bp):
CACACACCCGTGTGCTAGGCATGTAACCTTCGAAATGGCCT
Found at i:18937726 original size:25 final size:25
Alignment explanation
Indices: 18937707--18937763 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
18937697 TGAGCTGAAG
* *
18937707 ATTGGTGTGCTTTCACGAGCTATAA
1 ATTGGTATGCTCTCACGAGCTATAA
18937732 ATTGGTATGCTCTCACGAGCTATAA
1 ATTGGTATGCTCTCACGAGCTATAA
*
18937757 ATCGGTA
1 ATTGGTA
18937764 ACCTTAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (25 bp):
ATTGGTATGCTCTCACGAGCTATAA
Found at i:18941777 original size:42 final size:42
Alignment explanation
Indices: 18941718--18941819 Score: 177
Period size: 42 Copynumber: 2.4 Consensus size: 42
18941708 TTTACATCAT
* *
18941718 TGCTCACACGAGTTGTGGGTCGAAATGTAAGCTATACGATAC
1 TGCTCACACGAGCTGTGGGTCGAAATGTAAGCTACACGATAC
18941760 TGCTCACACGAGCTGTGGGTCGAAATGTAAGCTACACGATAC
1 TGCTCACACGAGCTGTGGGTCGAAATGTAAGCTACACGATAC
*
18941802 TGCTCAAACGAGCTGTGG
1 TGCTCACACGAGCTGTGG
18941820 AGTATCCACA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (42 bp):
TGCTCACACGAGCTGTGGGTCGAAATGTAAGCTACACGATAC
Found at i:18942988 original size:12 final size:12
Alignment explanation
Indices: 18942971--18942995 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18942961 TTTTTATACG
18942971 ACACAGCCTAGC
1 ACACAGCCTAGC
18942983 ACACAGCCTAGC
1 ACACAGCCTAGC
18942995 A
1 A
18942996 GGGGCATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.40, G:0.16, T:0.08
Consensus pattern (12 bp):
ACACAGCCTAGC
Found at i:18946303 original size:27 final size:27
Alignment explanation
Indices: 18946273--18946327 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
18946263 TATTATAAAA
*
18946273 TTAATTAAAATT-AAATATGTTAATAAT
1 TTAAGTAAAATTGAAATAT-TTAATAAT
* *
18946300 TTAAGTACAATTGAATTATTTAATAAT
1 TTAAGTAAAATTGAAATATTTAATAAT
18946327 T
1 T
18946328 ATGTTATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.45
Consensus pattern (27 bp):
TTAAGTAAAATTGAAATATTTAATAAT
Found at i:18947747 original size:13 final size:15
Alignment explanation
Indices: 18947723--18947755 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
18947713 TGATTTATAT
18947723 ATTAAGATTAATTAG
1 ATTAAGATTAATTAG
18947738 -TTAA-ATTAATTAG
1 ATTAAGATTAATTAG
18947751 ATTAA
1 ATTAA
18947756 TCATGCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (15 bp):
ATTAAGATTAATTAG
Found at i:18951911 original size:29 final size:29
Alignment explanation
Indices: 18951869--18952185 Score: 241
Period size: 29 Copynumber: 10.9 Consensus size: 29
18951859 TCATTGACTA
* * *
18951869 ATGAAAAAGGATAGATTCGACAATCAATT
1 ATGAAAAGGGATAGCTTCGACCATCAATT
* ** **
18951898 ATGAAAAGGGATAGCTTCGGCTGTTGATT
1 ATGAAAAGGGATAGCTTCGACCATCAATT
* * **
18951927 ATGAAAAGGGATAGCTTTGGCCATCGGTT
1 ATGAAAAGGGATAGCTTCGACCATCAATT
* * *
18951956 ATGAAAAAGGGATAGCTTCGGCTATCGATT
1 ATG-AAAAGGGATAGCTTCGACCATCAATT
* * * *
18951986 ATGAAAATGGAT-GGTGACGACCATCAACT
1 ATGAAAAGGGATAGCT-TCGACCATCAATT
*
18952015 ATGAAAAGGGAT-G-TTGACAACCATCAATT
1 ATGAAAAGGGATAGCTT--CGACCATCAATT
* *
18952044 ATGAAAAGGGATAGCTTCGACTATCGATT
1 ATGAAAAGGGATAGCTTCGACCATCAATT
* * *
18952073 ATGAAAAAGGATAGCTTC-AGCTATCGATT
1 ATGAAAAGGGATAGCTTCGA-CCATCAATT
* *
18952102 ATGAAAAGGGAT-GGTCACGACCATCAATT
1 ATGAAAAGGGATAGCT-TCGACCATCAATT
* * **
18952131 AATGAAAAGGGATGGTTTCGACCATCAAAG
1 -ATGAAAAGGGATAGCTTCGACCATCAATT
18952161 ATGAAAAGGGATAG-TTACGACCATC
1 ATGAAAAGGGATAGCTT-CGACCATC
18952186 GTTCAACATA
Statistics
Matches: 236, Mismatches: 40, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
28 8 0.03
29 174 0.74
30 50 0.21
31 4 0.02
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACCATCAATT
Found at i:18952136 original size:146 final size:146
Alignment explanation
Indices: 18951869--18952185 Score: 372
Period size: 146 Copynumber: 2.2 Consensus size: 146
18951859 TCATTGACTA
* * * * * *
18951869 ATGAAAAAGGATAGATT-CGACAATCAATTATGAAAAGGGATAGCTTCGGCTGTTGATTATGAAA
1 ATGAAAAGGGATAG-TTACAACCATCAATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAA
* ** * * * * * *
18951933 AGGGATAGCTTTGGCCATCGGTTATGAAAAAGGGATAGCTTCGGCTATCGATTATGAAAATGGAT
65 AAGGATAGCTTCAGCCATCGATTATGAAAAAGGGATAGCTACGACCATCAATTATGAAAAGGGAT
**
18951998 GGTGACGACCATCAACT
130 GGTGACGACCATCAAAG
18952015 ATGAAAAGGGAT-GTTGACAACCATCAATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAA
1 ATGAAAAGGGATAGTT-ACAACCATCAATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAA
* *
18952079 AAGGATAGCTTCAGCTATCGATTATG-AAAAGGGAT-GGTCACGACCATCAATTAATGAAAAGGG
65 AAGGATAGCTTCAGCCATCGATTATGAAAAAGGGATAGCT-ACGACCATCAATT-ATGAAAAGGG
**
18952142 ATGGTTTCGACCATCAAAG
128 ATGGTGACGACCATCAAAG
*
18952161 ATGAAAAGGGATAGTTACGACCATC
1 ATGAAAAGGGATAGTTACAACCATC
18952186 GTTCAACATA
Statistics
Matches: 144, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
144 4 0.03
145 19 0.13
146 118 0.82
147 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (146 bp):
ATGAAAAGGGATAGTTACAACCATCAATTATGAAAAGGGATAGCTTCGACTATCGATTATGAAAA
AGGATAGCTTCAGCCATCGATTATGAAAAAGGGATAGCTACGACCATCAATTATGAAAAGGGATG
GTGACGACCATCAAAG
Found at i:18952726 original size:26 final size:27
Alignment explanation
Indices: 18952697--18952752 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
18952687 ATGTGTTTTC
18952697 ATTGCATG-CTTTAATATGTCATAGCT
1 ATTGCATGTCTTTAATATGTCATAGCT
* * *
18952723 ATTGCATGTTTTTAATATGTCCTAGTT
1 ATTGCATGTCTTTAATATGTCATAGCT
18952750 ATT
1 ATT
18952753 ACATAGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.48
Consensus pattern (27 bp):
ATTGCATGTCTTTAATATGTCATAGCT
Found at i:18957231 original size:21 final size:21
Alignment explanation
Indices: 18957191--18957251 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
18957181 AATCTTGAAT
*
18957191 GAAATTAAGAGAAGAA-AAAAA
1 GAAA-TAAGAGAAAAAGAAAAA
*
18957212 GAAATGAGAGAAAAAGAAAAA
1 GAAATAAGAGAAAAAGAAAAA
*
18957233 GAAATAAAAGAAAAAGAAA
1 GAAATAAGAGAAAAAGAAA
18957252 CTGAGAGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.26
21 26 0.74
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (21 bp):
GAAATAAGAGAAAAAGAAAAA
Found at i:18957241 original size:15 final size:14
Alignment explanation
Indices: 18957202--18957251 Score: 64
Period size: 15 Copynumber: 3.4 Consensus size: 14
18957192 AAATTAAGAG
18957202 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
* *
18957216 TGAGAGAAAAAGAAA
1 -AAGAAAAAAAGAAA
18957231 AAGAAATAAAAGAAA
1 AAGAAA-AAAAGAAA
18957246 AAGAAA
1 AAGAAA
18957252 CTGAGAGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:18962520 original size:33 final size:34
Alignment explanation
Indices: 18962455--18962528 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
18962445 TTTTACTTGG
* *
18962455 TTTCTTTCTTCACTCATTTCTTTTGCAGACTCTT
1 TTTCTTTCTTCACTCATTTCTTTTGCAAACTCTC
18962489 TTTCTTTC-TCACTCGATTTCTTTT-CAAACTCTC
1 TTTCTTTCTTCACTC-ATTTCTTTTGCAAACTCTC
18962522 TTTCTTT
1 TTTCTTT
18962529 TTCTTTTTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.12, C:0.27, G:0.04, T:0.57
Consensus pattern (34 bp):
TTTCTTTCTTCACTCATTTCTTTTGCAAACTCTC
Found at i:18962541 original size:5 final size:6
Alignment explanation
Indices: 18962522--18962562 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
18962512 TCAAACTCTC
*
18962522 TTTCTT TTTCTT TTTCTT TTTCTT TTTC-A TTTC-T TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
18962563 CATTTTCTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 8 0.25
6 24 0.75
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:18966789 original size:14 final size:14
Alignment explanation
Indices: 18966770--18966796 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
18966760 TAGTTAAATT
18966770 AGTTAATTAATTTA
1 AGTTAATTAATTTA
18966784 AGTTAATTAATTT
1 AGTTAATTAATTT
18966797 GTTAAAATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
AGTTAATTAATTTA
Found at i:18969136 original size:43 final size:43
Alignment explanation
Indices: 18969086--18969351 Score: 451
Period size: 43 Copynumber: 6.2 Consensus size: 43
18969076 AAGATTGCAG
* * *
18969086 ATCTTATCTTCCCTAGGAGTAGGGAAACAGATCTAAGCTACGA
1 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
*
18969129 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCCAAGCTACGA
1 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
*
18969172 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTATGA
1 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
*
18969215 ATCTTATCTTCCCCAAGAGTAGGGAAACATATCCAAGCTACGA
1 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
18969258 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
1 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
* *
18969301 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCCAAGCCACGA
1 ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
*
18969344 GTCTTATC
1 ATCTTATC
18969352 CCCCTGAGGT
Statistics
Matches: 213, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 213 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (43 bp):
ATCTTATCTTCCCCAAGAGTAGGGAAACAGATCCAAGCTACGA
Found at i:18969476 original size:50 final size:50
Alignment explanation
Indices: 18969405--18969955 Score: 406
Period size: 50 Copynumber: 11.0 Consensus size: 50
18969395 CTCCCTAAGG
* * * *
18969405 TTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCATGCTTCCCTGACA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
* * * * * * *
18969455 TTCCAGTTCAAAAGATTAAAGCTACATCAGCGAATCTTACCTT-CCAGGCGA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTT-GCTTCCCTGAC-A
* * *
18969506 -TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
* * * * *
18969555 TTGCAGTTCAAAAGATTAAAGCTACATC-GGGAATCTTACCTT--CTAGGCGA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTT-GCTTCCCT-GAC-A
* *
18969605 -TGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
* * * ** * * *
18969654 TTACAGTTCAAAAGATTAAAGCTACATCAGCAAATCTTACCTT-CCAGGCGA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTT-GCTTCCCTGAC-A
* **
18969705 -TGCAGTGGAACAA-ATTAAAGCCACATTGGTGAATCTTGCTTCCCTGACA
1 TTGCAGTTGAA-AAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
* * * * * * * *
18969754 TTGCATTTCAAAATATTAAAGCTACATCAGCGAATCTTACCTT-CCAGGCA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTT-GCTTCCCTGACA
* * *
18969804 GTGCAG-TGAAGCAGATTAAAGCCACATCGGTGAATCTTGCTT-CCTCGACA
1 TTGCAGTTGAA-AAGATTAAAGCCACATCAGTGAATCTTGCTTCCCT-GACA
* * * * * * * *
18969854 TTGTAGTTGAGAATATTAAAGCTACAACAGTGAATCTTACTTCCCAGATA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
* * * * * *
18969904 GTGCAGTGGAACATATTAAAGCCACAGCAGCGAATCTTGCTTCCCTGACA
1 TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
18969954 TT
1 TT
18969956 AAAGTTATGA
Statistics
Matches: 379, Mismatches: 100, Indels: 44
0.72 0.19 0.08
Matches are distributed among these distances:
48 2 0.01
49 55 0.15
50 302 0.80
51 20 0.05
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (50 bp):
TTGCAGTTGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACA
Found at i:18969526 original size:100 final size:100
Alignment explanation
Indices: 18969406--18969955 Score: 806
Period size: 100 Copynumber: 5.5 Consensus size: 100
18969396 TCCCTAAGGT
* *
18969406 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCATGCTTCCCTGACATTCCAGTTCAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGAT
18969471 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGA
66 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGA
18969506 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGAT
* *
18969571 TAAAGCTACATC-GGGAATCTTACCTTCTAGGCGA
66 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGA
* *
18969605 TGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACATTACAGTTCAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGAT
*
18969670 TAAAGCTACATCAGCAAATCTTACCTTCCAGGCGA
66 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGA
* * * *
18969705 TGCAGTGGAACAAATTAAAGCCACATTGGTGAATCTTGCTTCCCTGACATTGCATTTCAAAATAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGAT
18969770 TAAAGCTACATCAGCGAATCTTACCTTCCAGGC-A
66 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGA
* * *
18969804 GTGCAGT-GAAGCAGATTAAAGCCACATCGGTGAATCTTGCTT-CCTCGACATTGTAGTTGAGAA
1 -TGCAGTGGAA-CAGATTAAAGCCACATCGGTGAATCTTGCTTCCCT-GACATTGCAGTTCAAAA
* * * **
18969867 TATTAAAGCTACAACAGTGAATCTTA-CTTCCCA-GATA
63 GATTAAAGCTACATCAGCGAATCTTACCTT-CCAGGCGA
* * * *
18969904 GTGCAGTGGAACATATTAAAGCCACAGCAGCGAATCTTGCTTCCCTGACATT
1 -TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATT
18969956 AAAGTTATGA
Statistics
Matches: 413, Mismatches: 29, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
99 106 0.26
100 301 0.73
101 6 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (100 bp):
TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGAT
TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGA
Found at i:18969727 original size:199 final size:200
Alignment explanation
Indices: 18969406--18969955 Score: 806
Period size: 199 Copynumber: 2.8 Consensus size: 200
18969396 TCCCTAAGGT
* *
18969406 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCATGCTTCCCTGACATTCCAGTTCAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTACAGTTCAAAAGAT
*
18969471 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGT
66 TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGATGCAGTGGAACAAATTAAAGCCACATCGGT
* *
18969536 GAATCTTGCTTCCCTGACATTGCAGTTCAAAAGATTAAAGCTACATC-GGGAATCTTACCTTCTA
131 GAATCTTGCTTCCCTGACATTGCAGTTCAAAAGATTAAAGCTACATCAGCGAATCTTACCTTCCA
18969600 GGC-G
196 GGCAG
*
18969604 ATGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACATTACAGTTCAAAAGA
1 -TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTACAGTTCAAAAGA
* *
18969669 TTAAAGCTACATCAGCAAATCTTACCTTCCAGGCGATGCAGTGGAACAAATTAAAGCCACATTGG
65 TTAAAGCTACATCAGCGAATCTTACCTTCCAGGCGATGCAGTGGAACAAATTAAAGCCACATCGG
* *
18969734 TGAATCTTGCTTCCCTGACATTGCATTTCAAAATATTAAAGCTACATCAGCGAATCTTACCTTCC
130 TGAATCTTGCTTCCCTGACATTGCAGTTCAAAAGATTAAAGCTACATCAGCGAATCTTACCTTCC
18969799 AGGCAG
195 AGGCAG
** * * *
18969805 TGCAGT-GAAGCAGATTAAAGCCACATCGGTGAATCTTGCTT-CCTCGACATTGTAGTTGAGAAT
1 TGCAGTGGAA-CAGATTAAAGCCACATCGGTGAATCTTGCTTCCCT-GACATTACAGTTCAAAAG
* * ** * *
18969868 ATTAAAGCTACAACAGTGAATCTTA-CTTCCCA-GATAGTGCAGTGGAACATATTAAAGCCACAG
64 ATTAAAGCTACATCAGCGAATCTTACCTT-CCAGGCGA-TGCAGTGGAACAAATTAAAGCCACAT
* *
18969931 CAGCGAATCTTGCTTCCCTGACATT
127 CGGTGAATCTTGCTTCCCTGACATT
18969956 AAAGTTATGA
Statistics
Matches: 319, Mismatches: 26, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
199 180 0.56
200 138 0.43
201 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (200 bp):
TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTACAGTTCAAAAGAT
TAAAGCTACATCAGCGAATCTTACCTTCCAGGCGATGCAGTGGAACAAATTAAAGCCACATCGGT
GAATCTTGCTTCCCTGACATTGCAGTTCAAAAGATTAAAGCTACATCAGCGAATCTTACCTTCCA
GGCAG
Found at i:18970511 original size:15 final size:15
Alignment explanation
Indices: 18970473--18970517 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
18970463 GTAGAAATCG
*
18970473 AGAGAAAAATAAAAA
1 AGAGAAAAATAGAAA
*
18970488 AGAAAAAAATAGAAA
1 AGAGAAAAATAGAAA
*
18970503 AGAGCAAAA-AGAAA
1 AGAGAAAAATAGAAA
18970517 A
1 A
18970518 ATGATGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 6 0.23
15 20 0.77
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (15 bp):
AGAGAAAAATAGAAA
Found at i:18976513 original size:20 final size:20
Alignment explanation
Indices: 18976466--18976529 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
18976456 GAAAATTTTT
* * *
18976466 AATTTTCTAGCTTTCTTTAA
1 AATTTTTTAGATTTTTTTAA
18976486 ATATTTTTTAGATTTTTTTAA
1 A-ATTTTTTAGATTTTTTTAA
*
18976507 AA-TTTTTATGATTTTTTAAA
1 AATTTTTTA-GATTTTTTTAA
18976527 AAT
1 AAT
18976530 AAAATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 6 0.16
20 14 0.38
21 17 0.46
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
AATTTTTTAGATTTTTTTAA
Found at i:18976598 original size:39 final size:37
Alignment explanation
Indices: 18976529--18976602 Score: 112
Period size: 39 Copynumber: 1.9 Consensus size: 37
18976519 TTTTTAAAAA
*
18976529 TAAAATTTTTTGAATTTATATAATTATTTTGAATTTT
1 TAAAATTTTTTGAATTTATAAAATTATTTTGAATTTT
*
18976566 TAAAATTATTTTGAATTTTTTAAAATTATTTTGAATT
1 TAAAATT-TTTTGAA-TTTATAAAATTATTTTGAATT
18976603 ATTTTGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 7 0.21
38 7 0.21
39 19 0.58
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (37 bp):
TAAAATTTTTTGAATTTATAAAATTATTTTGAATTTT
Found at i:18976617 original size:20 final size:19
Alignment explanation
Indices: 18976529--18976602 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
18976519 TTTTTAAAAA
*
18976529 TAAAATT-TTTTGAATTTA
1 TAAAATTATTTTGAATTTT
*
18976547 TATAATTATTTTGAATTTT
1 TAAAATTATTTTGAATTTT
18976566 TAAAATTATTTTGAATTTTT
1 TAAAATTATTTTGAA-TTTT
18976586 TAAAATTATTTTGAATT
1 TAAAATTATTTTGAATT
18976603 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.12
19 26 0.51
20 19 0.37
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TAAAATTATTTTGAATTTT
Found at i:18976618 original size:11 final size:10
Alignment explanation
Indices: 18976550--18976617 Score: 70
Period size: 10 Copynumber: 6.9 Consensus size: 10
18976540 GAATTTATAT
18976550 AATTATTTTG
1 AATTATTTTG
**
18976560 AATT-TTTAA
1 AATTATTTTG
18976569 AATTATTTTG
1 AATTATTTTG
*
18976579 AATT-TTTTAA
1 AATTATTTT-G
18976589 AATTATTTTG
1 AATTATTTTG
18976599 AATTATTTTG
1 AATTATTTTG
18976609 TAATT-TTTT
1 -AATTATTTT
18976618 TAAAGAGACC
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 11 0.23
10 29 0.60
11 8 0.17
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (10 bp):
AATTATTTTG
Found at i:18976925 original size:26 final size:26
Alignment explanation
Indices: 18976878--18976935 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
18976868 TTGGAATTTT
18976878 TATTTTTAAAATTTAATGTTTTTATA
1 TATTTTTAAAATTTAATGTTTTTATA
*
18976904 TATTCTTTAAAATTTTAT-TTTTTATA
1 TATT-TTTAAAATTTAATGTTTTTATA
18976930 -ATTTTT
1 TATTTTT
18976936 GAATACTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 12 0.40
27 12 0.40
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (26 bp):
TATTTTTAAAATTTAATGTTTTTATA
Found at i:18981394 original size:19 final size:18
Alignment explanation
Indices: 18981367--18981415 Score: 82
Period size: 19 Copynumber: 2.7 Consensus size: 18
18981357 CTTTATATAA
18981367 ATTTATATATTTTTAAAT
1 ATTTATATATTTTTAAAT
18981385 ATTATATATATTTTTAAAT
1 ATT-TATATATTTTTAAAT
18981404 ATTT-TATATTTT
1 ATTTATATATTTT
18981416 ATGTCCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
19 18 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTATATATTTTTAAAT
Found at i:18982256 original size:17 final size:18
Alignment explanation
Indices: 18982225--18982272 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
18982215 ATAAAATACA
*
18982225 TATTT-ATATTAAATATT
1 TATTTAATATTTAATATT
18982242 T-TGTTAA-ATTTAATATT
1 TAT-TTAATATTTAATATT
18982259 TATTTAATATTTAA
1 TATTTAATATTTAA
18982273 ATTATTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.04
17 17 0.65
18 8 0.31
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTTAATATTTAATATT
Found at i:18984346 original size:43 final size:43
Alignment explanation
Indices: 18984292--18984373 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
18984282 CCCATTAAAG
18984292 AAGCATTCAGTTCCTTTGGCCGAATAAGACATTGCAATTAAGC
1 AAGCATTCAGTTCCTTTGGCCGAATAAGACATTGCAATTAAGC
18984335 AAGCATTCAGTTCCTTTGGCCGAATAAGACATTGCAATT
1 AAGCATTCAGTTCCTTTGGCCGAATAAGACATTGCAATT
18984374 CAGCTCACCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (43 bp):
AAGCATTCAGTTCCTTTGGCCGAATAAGACATTGCAATTAAGC
Found at i:18985301 original size:21 final size:21
Alignment explanation
Indices: 18985275--18985335 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
18985265 TAACTTAATA
* *
18985275 ATAAAAGATCAAAAATCTATG
1 ATAAAAGATTAAGAATCTATG
18985296 ATAAAAGATTAAGAATCTATG
1 ATAAAAGATTAAGAATCTATG
18985317 ATAAAAGATTAAGAATCTA
1 ATAAAAGATTAAGAATCTA
18985336 ATCACATCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.26
Consensus pattern (21 bp):
ATAAAAGATTAAGAATCTATG
Found at i:18986376 original size:30 final size:31
Alignment explanation
Indices: 18986337--18986398 Score: 108
Period size: 30 Copynumber: 2.0 Consensus size: 31
18986327 TTCATCTTCA
18986337 ACCCTATGGCCGAATTTCACAACGGGAAACC
1 ACCCTATGGCCGAATTTCACAACGGGAAACC
*
18986368 ACCC-ATGGCCGAATTTCACAAGGGGAAACC
1 ACCCTATGGCCGAATTTCACAACGGGAAACC
18986398 A
1 A
18986399 TGGCTAGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.15
Consensus pattern (31 bp):
ACCCTATGGCCGAATTTCACAACGGGAAACC
Found at i:18987261 original size:50 final size:50
Alignment explanation
Indices: 18987180--18987471 Score: 356
Period size: 50 Copynumber: 5.8 Consensus size: 50
18987170 ATTTGGGTAA
* *
18987180 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATG
* * *
18987230 ATAGGTCTCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATG
* *
18987280 AGAGGTCCCATGTAAGACCATGTCT-AGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGA-GACATGGCATTGGCACCGAGATG
*
18987330 AGAGGTCCCATGTAAGACCATGTGTTG-GACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGT-CTGAGACATGGCATTGGCACCGAGATG
** * * *
18987380 AGAGGTCCCCCGTAAGACCATGTCT-AGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGA-GACATGGCATTGGCACCGAGATG
** * * * * *
18987430 AGAACTCTCATGTAATACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCA
18987472 GTACAAGAAA
Statistics
Matches: 209, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
49 2 0.01
50 206 0.99
51 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATG
Found at i:18987450 original size:150 final size:150
Alignment explanation
Indices: 18987179--18987520 Score: 404
Period size: 150 Copynumber: 2.3 Consensus size: 150
18987169 CATTTGGGTA
* * * *
18987179 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGATAGGTCTCATGTA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTA
* * ** *
18987244 AGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTAGGA
66 AGACCATGTCTGAGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCATATCTAGGA
*
18987309 CATGGCGTTGGCACCGAGAT
131 CATGGCATTGGCACCGAGAT
* * *
18987329 AAGAGGTCCCATGTAAGACCATGTGTTGGACATGGCATTGGCACCGAGATGAGAGGTCCCCCGTA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTA
* * * * *
18987394 AGACCATGTCT-AGGACATGGCATGGGCACCTATATGAGAACTCTCATGTAATACCATATCTGGG
66 AGACCATGTCTGA-GACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCATATCTAGG
* * *
18987458 ATATGGCATTGGCAGTACAAGA-
130 ACATGGCATTGGCA--CCGAGAT
* * * *
18987480 AACA--TCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
18987521 TGTTATATTC
Statistics
Matches: 162, Mismatches: 27, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
149 33 0.20
150 122 0.75
151 3 0.02
152 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (150 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTA
AGACCATGTCTGAGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCATATCTAGGA
CATGGCATTGGCACCGAGAT
Found at i:18994001 original size:50 final size:50
Alignment explanation
Indices: 18993725--18994003 Score: 387
Period size: 50 Copynumber: 5.6 Consensus size: 50
18993715 ATTTGGGTAA
*
18993725 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
18993775 AGAGGTCCCATGTAAAACCATGTCTGAGACATGGCGGTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
18993825 AGAGGTCCCATGTAAGACCATGACTAGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
18993875 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
18993925 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * *
18993975 AGAACTCTCATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
18994004 TATGTCATTG
Statistics
Matches: 202, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 202 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:18996821 original size:56 final size:50
Alignment explanation
Indices: 18996667--18996851 Score: 199
Period size: 50 Copynumber: 3.6 Consensus size: 50
18996657 CAATGTCATA
* * ** * *
18996667 TCCCAGATATGGTCTTACATAGGAGTTCTCATATAGATGCCAACGCCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCATG
* * *
18996717 TCCCAGACATGGTCTTACATGGAACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCATG
* *
18996767 TCCCAGATATGGTCTTACATGGGACCTCTCATAATATCAATGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTC---ATATC---GATGCCAACGCCATG
* *
18996823 TGCCAGACATGGTCTTACATGGGATCTCT
1 TCCCAGACATGGTCTTACATGGGACCTCT
18996852 TTACTCATAT
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 69 0.62
53 4 0.04
56 39 0.35
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCATG
Found at i:19007688 original size:21 final size:21
Alignment explanation
Indices: 19007662--19007704 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
19007652 TTGCCAAAAC
19007662 ATTGTTTACAGTAGAAGCTTT
1 ATTGTTTACAGTAGAAGCTTT
19007683 ATTGTTTACAGTAGAAGCTTT
1 ATTGTTTACAGTAGAAGCTTT
19007704 A
1 A
19007705 GAAACCGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (21 bp):
ATTGTTTACAGTAGAAGCTTT
Found at i:19008172 original size:24 final size:23
Alignment explanation
Indices: 19008145--19008190 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
19008135 ATACAGAATC
*
19008145 CTACCCCCATCCTCTACACACCAA
1 CTACCACCATCCTCT-CACACCAA
*
19008169 CTACGACCATCCTCTCACACCA
1 CTACCACCATCCTCTCACACCA
19008191 TGTGGGGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.28, C:0.52, G:0.02, T:0.17
Consensus pattern (23 bp):
CTACCACCATCCTCTCACACCAA
Found at i:19013118 original size:25 final size:25
Alignment explanation
Indices: 19013080--19013148 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
19013070 ATAATAAGAA
19013080 AGGAT-GAAATTGGCTAAGTGAAATG
1 AGGATGGAAATTGGCTAAGTG-AATG
* *
19013105 ATGATGGAAA-TGGCTAGGTGAATG
1 AGGATGGAAATTGGCTAAGTGAATG
19013129 AGGATGGAAATTTGGCTAAG
1 AGGATGGAAA-TTGGCTAAG
19013149 GTTTTGAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 13 0.35
25 13 0.35
26 11 0.30
ACGTcount: A:0.36, C:0.04, G:0.35, T:0.25
Consensus pattern (25 bp):
AGGATGGAAATTGGCTAAGTGAATG
Found at i:19014475 original size:30 final size:30
Alignment explanation
Indices: 19014436--19014526 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
19014426 ATAAAATAGC
19014436 ATCGAGCTCAATGAGCTAAGATTGAGCTGA
1 ATCGAGCTCAATGAGCTAAGATTGAGCTGA
* * *
19014466 ATTGAGCTCAAGGAACTGAA-ATTCGAGCTGA
1 ATCGAGCTCAATGAGCT-AAGATT-GAGCTGA
* * *
19014497 ATCAAGCTCAATAAGCTAGGATTGAGCTGA
1 ATCGAGCTCAATGAGCTAAGATTGAGCTGA
19014527 TCAACTAGAA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
30 25 0.51
31 24 0.49
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.23
Consensus pattern (30 bp):
ATCGAGCTCAATGAGCTAAGATTGAGCTGA
Found at i:19015505 original size:14 final size:14
Alignment explanation
Indices: 19015486--19015512 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
19015476 TTCGATTTAG
19015486 AATTAATTTTCATT
1 AATTAATTTTCATT
19015500 AATTAATTTTCAT
1 AATTAATTTTCAT
19015513 GAATAAAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
AATTAATTTTCATT
Found at i:19027823 original size:24 final size:23
Alignment explanation
Indices: 19027796--19027844 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
19027786 TTAAAACTAT
19027796 TTCTAA-AGAAAACTCAAGAGAGAA
1 TTCTAAGAG-AAACTCAA-AGAGAA
**
19027820 TTCTTGGAGAAACTCAAAGAGAA
1 TTCTAAGAGAAACTCAAAGAGAA
19027843 TT
1 TT
19027845 TTCACTCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 8 0.36
24 12 0.55
25 2 0.09
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (23 bp):
TTCTAAGAGAAACTCAAAGAGAA
Found at i:19031781 original size:12 final size:12
Alignment explanation
Indices: 19031764--19031792 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
19031754 CGAATTCTTG
19031764 GAGAAACTCAAA
1 GAGAAACTCAAA
19031776 GAGAAACTCAAA
1 GAGAAACTCAAA
19031788 GAGAA
1 GAGAA
19031793 TTTAGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.14, G:0.21, T:0.07
Consensus pattern (12 bp):
GAGAAACTCAAA
Found at i:19032468 original size:17 final size:17
Alignment explanation
Indices: 19032446--19032484 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
19032436 TGTGGTAATA
19032446 TGAGCCCATCACGTTCT
1 TGAGCCCATCACGTTCT
19032463 TGAGCCCATCACGTTCT
1 TGAGCCCATCACGTTCT
19032480 TGAGC
1 TGAGC
19032485 TTGAGTTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.18, C:0.33, G:0.21, T:0.28
Consensus pattern (17 bp):
TGAGCCCATCACGTTCT
Found at i:19038929 original size:47 final size:47
Alignment explanation
Indices: 19038851--19039590 Score: 1167
Period size: 47 Copynumber: 15.6 Consensus size: 47
19038841 CCCTTCGGGA
* * * ** * *
19038851 CTTATCACATTTATACACTTTCACATCCATCACGTTTGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19038898 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19038945 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19038992 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19039039 CATATCACATATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19039088 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19039135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19039182 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19039230 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19039277 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
19039326 CTTATCACATATATATACACTTTCACATTCATCACATTGGACATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19039375 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19039422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19039469 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19039516 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19039565 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
19039591 CACAATTATC
Statistics
Matches: 647, Mismatches: 37, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
46 27 0.04
47 394 0.61
48 18 0.03
49 208 0.32
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:19039107 original size:143 final size:143
Alignment explanation
Indices: 19038851--19039590 Score: 1202
Period size: 143 Copynumber: 5.2 Consensus size: 143
19038841 CCCTTCGGGA
* * * ** * * * *
19038851 CTTATCACATTTATACACTTTCACATCCATCACGTTTGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
19038914 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
19038979 TCGGCTATTAGGC
131 TCGGCTATTAGGC
* *
19038992 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGCCATATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
19039057 ACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
19039122 TCGGCCATTAGGC
131 TCGGCTATTAGGC
19039135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
19039200 ACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
19039264 TCGGCTATTAGGC
131 TCGGCTATTAGGC
19039277 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
19039342 ACACTTTCACATTCATCACATTGGACATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
19039407 CATCGGCTATTAGGC
129 CATCGGCTATTAGGC
19039422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
19039485 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * *
19039550 CATTGGCCATTCGGC
129 CATCGGCTATTAGGC
* *
19039565 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
19039591 CACAATTATC
Statistics
Matches: 565, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
141 89 0.16
142 63 0.11
143 272 0.48
144 76 0.13
145 65 0.12
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:19039626 original size:96 final size:94
Alignment explanation
Indices: 19038851--19039590 Score: 1167
Period size: 96 Copynumber: 7.8 Consensus size: 94
19038841 CCCTTCGGGA
* * * ** * * * *
19038851 CTTATCACATTTATACACTTTCACATCCATCACGTTTGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
19038916 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
19038945 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
19039010 TTTCACATTAATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
19039039 CATATCACATATATATACACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
19039104 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
19039135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
19039200 ACTTTCACATTCATCACAT-GGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
19039230 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
19039295 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
19039326 CTTATCACATATATATACACTTTCACATTCATCACATTGGACATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
19039391 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
19039422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
19039487 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
19039516 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
19039581 ACATTCACAT
64 ACTTTCACAT
19039591 CACAATTATC
Statistics
Matches: 602, Mismatches: 35, Indels: 16
0.92 0.05 0.02
Matches are distributed among these distances:
94 224 0.37
95 93 0.15
96 242 0.40
98 43 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:19043073 original size:40 final size:40
Alignment explanation
Indices: 19043023--19043233 Score: 350
Period size: 40 Copynumber: 5.3 Consensus size: 40
19043013 GTTTCGGGGT
* *
19043023 TTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* * *
19043063 TTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
19043103 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
19043143 TTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
19043183 TTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
19043223 TTAGCCCGGAT
1 TTAGCCCGGAT
19043234 CATTGCCGAG
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:19043360 original size:38 final size:38
Alignment explanation
Indices: 19043291--19043365 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
19043281 GAATTTTAAT
*
19043291 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
19043329 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
19043366 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:19045718 original size:49 final size:49
Alignment explanation
Indices: 19045497--19046371 Score: 1461
Period size: 47 Copynumber: 18.3 Consensus size: 49
19045487 CCCTTCGGGA
* * * * *
19045497 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19045544 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19045591 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045638 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045685 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19045734 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045782 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045829 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045876 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19045925 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045973 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046020 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19046069 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046118 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046165 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046212 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046259 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19046308 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046357 CTTATCACATATATA
1 CTTATCACATATATA
19046372 CATTCACATC
Statistics
Matches: 793, Mismatches: 23, Indels: 22
0.95 0.03 0.03
Matches are distributed among these distances:
46 55 0.07
47 355 0.45
48 36 0.05
49 347 0.44
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:19045831 original size:191 final size:191
Alignment explanation
Indices: 19045497--19046380 Score: 1550
Period size: 191 Copynumber: 4.6 Consensus size: 191
19045487 CCCTTCGGGA
* * * * * * *
19045497 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
19045558 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
*
19045623 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045685 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
19045750 ACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
66 ACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
19045815 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19045876 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
19045941 ACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
66 ACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
19046006 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 ATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19046069 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
19046132 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
19046197 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19046259 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
19046324 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA--TTCACAT
66 ACACTTTCACATTCATCACA-TGGCCATTCGGCCTTATCACATATATACACTTTCACAT
19046381 CACAATTATC
Statistics
Matches: 670, Mismatches: 16, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
188 10 0.01
189 1 0.00
190 138 0.21
191 281 0.42
192 145 0.22
193 95 0.14
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (191 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:19049048 original size:35 final size:35
Alignment explanation
Indices: 19048978--19049048 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
19048968 TCTAGGATCA
* *
19048978 CATATCTCAGAAGATCACCTTCCATATTTGTCAAG
1 CATATCTCAAAAGATCACCTTCCATATTTGCCAAG
* * *
19049013 CATATCTTCAAAAGATCTCTTTCCTTA-TTGCCAAG
1 CATATC-TCAAAAGATCACCTTCCATATTTGCCAAG
19049048 C
1 C
19049049 TCCAGAGATG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 14 0.47
36 16 0.53
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.34
Consensus pattern (35 bp):
CATATCTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:19053854 original size:48 final size:48
Alignment explanation
Indices: 19053773--19053866 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
19053763 TTCTTTGCTC
* **
19053773 AAAACGCCTAAGTCAGCCTAACTTGCAGTAATAAAGGATTCAACAGTA
1 AAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGTA
* **
19053821 AAAATGCCTAAGTCAGTTTAACTCGCAACAATAAAGGATTCAACAG
1 AAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAG
19053867 AATTCCCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (48 bp):
AAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGTA
Done.