Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 77 of 172
Found at i:21994282 original size:222 final size:223
Alignment explanation
Indices: 21993877--21994289 Score: 661
Period size: 222 Copynumber: 1.9 Consensus size: 223
21993867 AATTAATTTC
* *
21993877 GGTCAAAATATAAAAGATATGAAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATT
1 GGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATT
21993942 TGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATTAAGATAAACAATTATATTAA
66 TGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATTAAGATAAACAATTATATTAA
* *
21994007 TTAATTTCAATAAAAATATAAAAGACATGAAAATTAATATTCTTTTAGAAATAATATAATTAATA
131 TTAATTTCAATAAAAATATAAAAGACATGAAAATTAACATTCTTCTAGAAATAATATAATTAATA
21994072 TATTACTTTGATTCATATCAAATATTAA
196 TATTACTTTGATTCATATCAAATATTAA
* *
21994100 GGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGACTT
1 GGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATT
* *
21994165 TGATT-ATACAAAATATTAATTGTATATATTTTA-CGGAATTTATTAATATAAATAATTATATTA
66 TGATTCATACAAAATATTAATTGTATATATTTTATC-GAATTTATTAAGATAAACAATTATATTA
* * * * * *
21994228 ATTAATTTCGATCAATATATAAAATACATTG-CAATTAACATTCTTCTGGAAATAATATAATT
130 ATTAATTTCAATAAAAATATAAAAGACA-TGAAAATTAACATTCTTCTAGAAATAATATAATT
21994290 CATTTTTTTA
Statistics
Matches: 174, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
221 1 0.01
222 105 0.60
223 68 0.39
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (223 bp):
GGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATT
TGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATTAAGATAAACAATTATATTAA
TTAATTTCAATAAAAATATAAAAGACATGAAAATTAACATTCTTCTAGAAATAATATAATTAATA
TATTACTTTGATTCATATCAAATATTAA
Found at i:21997013 original size:38 final size:40
Alignment explanation
Indices: 21996961--21997038 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
21996951 TATTTTAGTT
21996961 TGTGTATTTAATTA-TGTCTT-AGTTTGAACATCATTAATA
1 TGTGTATTTAATTAGTGTCTTAAGTTTGAA-ATCATTAATA
*
21997000 TGTGT-TTTAATTATGTGTCTTAATTTTGAAATCATTAAT
1 TGTGTATTTAATTA-GTGTCTTAAGTTTGAAATCATTAAT
21997039 GTTTGTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
38 8 0.23
39 5 0.14
40 15 0.43
41 7 0.20
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.51
Consensus pattern (40 bp):
TGTGTATTTAATTAGTGTCTTAAGTTTGAAATCATTAATA
Found at i:21998716 original size:36 final size:36
Alignment explanation
Indices: 21998672--21998752 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
21998662 GCTAGAGACA
** ** *
21998672 GTGGTGTGCGTTTCGAAAGGAATATTGTTGGTGGTG
1 GTGGTGTGCGCCTCGAAAGGAATATTACTAGTGGTG
*
21998708 GTGGTGTGCGCCTCGAAAGGAATGTTACTAGTGGTG
1 GTGGTGTGCGCCTCGAAAGGAATATTACTAGTGGTG
21998744 GTGGTGTGC
1 GTGGTGTGC
21998753 CCGATTTAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.16, C:0.10, G:0.42, T:0.32
Consensus pattern (36 bp):
GTGGTGTGCGCCTCGAAAGGAATATTACTAGTGGTG
Found at i:22000432 original size:12 final size:12
Alignment explanation
Indices: 22000411--22000446 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
22000401 AATGAGAAAG
22000411 AACA-AAAAGAA
1 AACAGAAAAGAA
22000422 AACAGAAAAGAA
1 AACAGAAAAGAA
*
22000434 AAAAGAAAAGAA
1 AACAGAAAAGAA
22000446 A
1 A
22000447 GAGGTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.81, C:0.06, G:0.14, T:0.00
Consensus pattern (12 bp):
AACAGAAAAGAA
Found at i:22026286 original size:27 final size:26
Alignment explanation
Indices: 22026253--22026451 Score: 213
Period size: 27 Copynumber: 7.4 Consensus size: 26
22026243 ATCCTAAAAA
22026253 GGTAAAATGATCGAATTACCCCCGAAG
1 GGTAAAATGA-CGAATTACCCCCGAAG
* * * *
22026280 GGAAAAATGACCGAATTACACTCGAAT
1 GGTAAAATGA-CGAATTACCCCCGAAG
22026307 GGTAAAATGACCGAA-TACCCCCGAAG
1 GGTAAAATGA-CGAATTACCCCCGAAG
**
22026333 GGTAAAATGACTGAATTACCCCTAAAG
1 GGTAAAATGAC-GAATTACCCCCGAAG
* *
22026360 TG-AAAATTGACTGAATTACCCCCAAAG
1 GGTAAAA-TGAC-GAATTACCCCCGAAG
*
22026387 GGTAAAATGATCGAATTACCCTCGAAG
1 GGTAAAATGA-CGAATTACCCCCGAAG
* *
22026414 GGTAAAATGACTAAATTACCCCTGAAG
1 GGTAAAATGAC-GAATTACCCCCGAAG
22026441 GGTAAAATGAC
1 GGTAAAATGAC
22026452 CAAAATACCC
Statistics
Matches: 147, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
25 1 0.01
26 26 0.18
27 115 0.78
28 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACGAATTACCCCCGAAG
Found at i:22026391 original size:80 final size:81
Alignment explanation
Indices: 22026253--22026477 Score: 258
Period size: 80 Copynumber: 2.8 Consensus size: 81
22026243 ATCCTAAAAA
** * * *
22026253 GGTAAAATGA-TCGAATTACCCCCGAAGGGAAAAATGACCGAATTACACTCGAATGGTAAAATGA
1 GGTAAAATGACT-GAATTACCCCTAAAGGGAAAAATGACCGAATTACACCCAAAGGGTAAAATGA
22026317 CCGAA-TACCCCCGAAG
65 CCGAATTACCCCCGAAG
* * * * *
22026333 GGTAAAATGACTGAATTACCCCTAAAGTGAAAATTGACTGAATTACCCCCAAAGGGTAAAATGAT
1 GGTAAAATGACTGAATTACCCCTAAAGGGAAAAATGACCGAATTACACCCAAAGGGTAAAATGAC
*
22026398 CGAATTACCCTCGAAG
66 CGAATTACCCCCGAAG
* * * * * * *
22026414 GGTAAAATGACTAAATTACCCCTGAAGGGTAAAATGACCAAAATAC-CCCATAGGGAAAAATGAC
1 GGTAAAATGACTGAATTACCCCTAAAGGGAAAAATGACCGAATTACACCCAAAGGGTAAAATGAC
22026478 TGTTATACCC
Statistics
Matches: 121, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
80 72 0.60
81 49 0.40
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (81 bp):
GGTAAAATGACTGAATTACCCCTAAAGGGAAAAATGACCGAATTACACCCAAAGGGTAAAATGAC
CGAATTACCCCCGAAG
Found at i:22026461 original size:54 final size:53
Alignment explanation
Indices: 22026253--22026479 Score: 246
Period size: 54 Copynumber: 4.2 Consensus size: 53
22026243 ATCCTAAAAA
* * *
22026253 GGTAAAATGA-TCGAATTACCCCCGAAGGGAAAAATGACCGAATTACACTCGAAT
1 GGTAAAATGACT-GAATTACCCCCGAAGGGTAAAATGACCGAATTAC-CCCGAAG
* * *
22026307 GGTAAAATGACCGAA-TACCCCCGAAGGGTAAAATGACTGAATTACCCCTAA-
1 GGTAAAATGACTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCGAAG
* * *
22026358 AGTGAAAATTGACTGAATTACCCCCAAAGGGTAAAATGATCGAATTACCCTCGAAG
1 GGT-AAAA-TGACTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCC-CGAAG
* * * *
22026414 GGTAAAATGACTAAATTACCCCTGAAGGGTAAAATGACCAAAATACCCC-ATAG
1 GGTAAAATGACTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCGA-AG
*
22026467 GGAAAAATGACTG
1 GGTAAAATGACTG
22026480 TTATACCCCT
Statistics
Matches: 146, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
51 2 0.01
52 9 0.06
53 49 0.34
54 77 0.53
55 7 0.05
56 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (53 bp):
GGTAAAATGACTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCGAAG
Found at i:22026472 original size:107 final size:107
Alignment explanation
Indices: 22026256--22026479 Score: 290
Period size: 107 Copynumber: 2.1 Consensus size: 107
22026246 CTAAAAAGGT
* * *
22026256 AAAATGA-TCGAATTACCCCCGAAGGGAAAAATGACCGAATTACACTCGAATGGTAAAATGACCG
1 AAAATGACT-GAATTACCCCCAAAGGGAAAAATGACCGAATTACACTCGAAGGGTAAAATGACCA
** * *
22026320 AATACCCCCGAAGGGTAAAATGACTGAATTACCCCTAAAGTGA
65 AATACCCCCGAAGGGTAAAATGACCAAAATACCCCTAAAGGGA
* * * * *
22026363 AAATTGACTGAATTACCCCCAAAGGGTAAAATGATCGAATTACCCTCGAAGGGTAAAATGACTAA
1 AAAATGACTGAATTACCCCCAAAGGGAAAAATGACCGAATTACACTCGAAGGGTAAAATGACCAA
* *
22026428 ATTACCCCTGAAGGGTAAAATGACCAAAATACCCC-ATAGGGA
66 A-TACCCCCGAAGGGTAAAATGACCAAAATACCCCTAAAGGGA
22026470 AAAATGACTG
1 AAAATGACTG
22026480 TTATACCCCT
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
107 70 0.70
108 30 0.30
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.19
Consensus pattern (107 bp):
AAAATGACTGAATTACCCCCAAAGGGAAAAATGACCGAATTACACTCGAAGGGTAAAATGACCAA
ATACCCCCGAAGGGTAAAATGACCAAAATACCCCTAAAGGGA
Found at i:22026475 original size:26 final size:26
Alignment explanation
Indices: 22026253--22026477 Score: 105
Period size: 27 Copynumber: 8.4 Consensus size: 26
22026243 ATCCTAAAAA
* * * *
22026253 GGTAAAATGATCGAATTACCCCCGAAG
1 GGTAAAATGACCAAAATA-CCCCTAAG
* * * * * *
22026280 GGAAAAATGACCGAATTACACTCGAAT
1 GGTAAAATGACCAAAATAC-CCCTAAG
* *
22026307 GGTAAAATGACC-GAATACCCCCGAAG
1 GGTAAAATGACCAAAATA-CCCCTAAG
** *
22026333 GGTAAAATGACTGAATTACCCCTAA-
1 GGTAAAATGACCAAAATACCCCTAAG
* ** * *
22026358 AGTGAAAATTGACTGAATTACCCCCAAAG
1 GGT-AAAA-TGACCAAAATA-CCCCTAAG
* * * *
22026387 GGTAAAATGATCGAATTACCCTCGAAG
1 GGTAAAATGACCAAAATACCC-CTAAG
* *
22026414 GGTAAAATGACTAAATTACCCCTGAAG
1 GGTAAAATGACCAAAATACCCCT-AAG
22026441 GGTAAAATGACCAAAATACCCC-ATAG
1 GGTAAAATGACCAAAATACCCCTA-AG
*
22026467 GGAAAAATGAC
1 GGTAAAATGAC
22026478 TGTTATACCC
Statistics
Matches: 162, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
25 3 0.02
26 46 0.28
27 101 0.62
28 10 0.06
29 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (26 bp):
GGTAAAATGACCAAAATACCCCTAAG
Found at i:22026682 original size:26 final size:26
Alignment explanation
Indices: 22026652--22026752 Score: 130
Period size: 26 Copynumber: 3.9 Consensus size: 26
22026642 TTGCCATATA
**
22026652 TACTATTACTGGCAATTTTGCTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
* *
22026678 TACTAATACTGACAGCTTTGCTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
* * *
22026704 TACTTTTACTGGTAGCTTTACTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
*
22026730 TATTATTACTGGCAGCTTTGCTG
1 TACTATTACTGGCAGCTTTGCTG
22026753 TGCTATTAGT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 62 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.42
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCAT
Found at i:22027088 original size:28 final size:28
Alignment explanation
Indices: 22026864--22027086 Score: 275
Period size: 28 Copynumber: 8.0 Consensus size: 28
22026854 CATTGTACTA
* *
22026864 TTACTATATTGGGCTAAGGCCCATACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
** *
22026892 TTACTGTATTGGGCTAAGGCTTACACTC
1 TTACTGTATTGGGCTAAGGCCCACACTG
** * * *
22026920 TTACTACAATAGGCTAAGGCCCACATTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
22026948 TTACTATATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
22026976 TTACTGTATTGGGCTAAGGCTCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
22027004 TTACTGTATCGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* * * * *
22027032 CTATTGTATCGGGCTAAGACCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
22027060 TTACTGTATCGGGCTAAGGCCCACACT
1 TTACTGTATTGGGCTAAGGCCCACACT
22027087 ATACTATTAC
Statistics
Matches: 167, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 167 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:22027098 original size:33 final size:31
Alignment explanation
Indices: 22026859--22027115 Score: 144
Period size: 28 Copynumber: 8.9 Consensus size: 31
22026849 TACTGCATTG
* *
22026859 TACTATTACTATATTGGGCTAAGG-CC-CA-
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
* * **
22026887 TACTGTTACTGTATTGGGCTAAGGCTTACAC
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
** *
22026918 T-C--TTACTACAAT-AGGCTAAGGCCCACA-
1 TACTATTACT-GTATCGGGCTAAGGCCCACAC
* * *
22026945 T--TGTTACTATATTGGGCTAAGG-CC-CAC
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
* * *
22026972 -ACTGTTACTGTATTGGGCTAAGG--CTCAC
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
*
22027000 -ACTGTTACTGTATCGGGCTAAGGCCCACAC
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
* *
22027030 TGCTA-T--TGTATCGGGCTAA-GACC-CAC
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
22027056 -ACTATTACTGTATCGGGCTAAGGCCCACAC
1 TACTATTACTGTATCGGGCTAAGGCCCACAC
* * *
22027086 TATACTATTACTGCATAGGGCTCAGGCCCA
1 --TACTATTACTGTATCGGGCTAAGGCCCA
22027116 GACTGTTAAC
Statistics
Matches: 184, Mismatches: 23, Indels: 39
0.75 0.09 0.16
Matches are distributed among these distances:
25 3 0.02
26 6 0.03
27 9 0.05
28 123 0.67
29 5 0.03
30 11 0.06
31 3 0.02
33 24 0.13
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (31 bp):
TACTATTACTGTATCGGGCTAAGGCCCACAC
Found at i:22041849 original size:23 final size:23
Alignment explanation
Indices: 22041815--22041879 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
22041805 GGAAACATTT
22041815 TATGCATACAAGTGATAGTGGCAC
1 TATG-ATACAAGTGATAGTGGCAC
* *
22041839 TATGATGCAAGTGTTAGTGGCAC
1 TATGATACAAGTGATAGTGGCAC
*
22041862 TATGGTACAAGTGATAGT
1 TATGATACAAGTGATAGT
22041880 AGAACTTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 32 0.89
24 4 0.11
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (23 bp):
TATGATACAAGTGATAGTGGCAC
Found at i:22042463 original size:22 final size:22
Alignment explanation
Indices: 22042435--22042485 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
22042425 TTTAGTATTA
* *
22042435 AGTGTCATGATATCCGACTCTC
1 AGTGTCATGATATCCGACCCCC
*
22042457 AGTGTCATGATATTCGACCCCC
1 AGTGTCATGATATCCGACCCCC
22042479 AGTGTCA
1 AGTGTCA
22042486 CGACATTGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (22 bp):
AGTGTCATGATATCCGACCCCC
Found at i:22043401 original size:20 final size:21
Alignment explanation
Indices: 22043364--22043410 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
22043354 TTTTTCAACA
*
22043364 AAAAATAC-AAAATAATTT-T
1 AAAAATTCAAAAATAATTTAT
22043383 CAAAAATTCAAAAAT-ATTTAT
1 -AAAAATTCAAAAATAATTTAT
22043404 AAAAATT
1 AAAAATT
22043411 TTCAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAATTCAAAAATAATTTAT
Found at i:22044199 original size:16 final size:16
Alignment explanation
Indices: 22044178--22044210 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22044168 TGAAGTCAAC
22044178 TTTACTCTTGAAACGA
1 TTTACTCTTGAAACGA
22044194 TTTACTCTTGAAACGA
1 TTTACTCTTGAAACGA
22044210 T
1 T
22044211 AAGAATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (16 bp):
TTTACTCTTGAAACGA
Found at i:22052428 original size:8 final size:8
Alignment explanation
Indices: 22052402--22052438 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
22052392 ATGTATACAC
22052402 ATTTTAAT
1 ATTTTAAT
*
22052410 A-TTTGAT
1 ATTTTAAT
22052417 -TTTTAAT
1 ATTTTAAT
22052424 ATTTTAAT
1 ATTTTAAT
22052432 ATTTTAA
1 ATTTTAA
22052439 AATTAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
7 10 0.40
8 15 0.60
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
ATTTTAAT
Found at i:22059803 original size:21 final size:22
Alignment explanation
Indices: 22059779--22059830 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
22059769 AAGACATGGT
* *
22059779 CGTGTGACTAG-CATACATGCC
1 CGTGTGACTAGTCACACATGAC
* *
22059800 CGTGTCACT-GTGACACATGAC
1 CGTGTGACTAGTCACACATGAC
22059821 CGTGTGACTA
1 CGTGTGACTA
22059831 AAAGACGTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (22 bp):
CGTGTGACTAGTCACACATGAC
Found at i:22059986 original size:30 final size:30
Alignment explanation
Indices: 22059950--22060054 Score: 156
Period size: 30 Copynumber: 3.5 Consensus size: 30
22059940 TCCTAAAGCA
* * *
22059950 GCACACGGCCATGTGAACCACCTGTGTGCG
1 GCACACGCCCGTGTGAACCACCCGTGTGCG
*
22059980 GCACACGCCCGTGTGAACCACCCGTGTGCA
1 GCACACGCCCGTGTGAACCACCCGTGTGCG
* *
22060010 GCACATGCCCGTGTGAACCACCCGTGTGTG
1 GCACACGCCCGTGTGAACCACCCGTGTGCG
22060040 GCACACGCCCGTGTG
1 GCACACGCCCGTGTG
22060055 GTTCATAAAC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (30 bp):
GCACACGCCCGTGTGAACCACCCGTGTGCG
Found at i:22060005 original size:13 final size:13
Alignment explanation
Indices: 22059987--22060037 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 13
22059977 GCGGCACACG
22059987 CCCGTGTGAACCA
1 CCCGTGTGAACCA
*
22060000 CCCGTGTGCAGCACA
1 CCCGTGTG-AAC-CA
22060015 TGCCCGTGTGAACCA
1 --CCCGTGTGAACCA
22060030 CCCGTGTG
1 CCCGTGTG
22060038 TGGCACACGC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 16 0.50
14 2 0.06
15 4 0.12
16 2 0.06
17 8 0.25
ACGTcount: A:0.18, C:0.37, G:0.27, T:0.18
Consensus pattern (13 bp):
CCCGTGTGAACCA
Found at i:22067749 original size:29 final size:29
Alignment explanation
Indices: 22067707--22067947 Score: 247
Period size: 29 Copynumber: 8.2 Consensus size: 29
22067697 AATTTTGATA
22067707 GTCGTCACCATCCCTTTTCATATTCGATG
1 GTCGTCACCATCCCTTTTCATATTCGATG
***
22067736 GTCAAAACCATCCCTTTTCATAGTT-GATG
1 GTCGTCACCATCCCTTTTCATA-TTCGATG
*
22067765 GTCATCACCATCCCTTTTCATAGTT-GATG
1 GTCGTCACCATCCCTTTTCATA-TTCGATG
*
22067794 GTCCTCACCATCCCTTTTCATAGTT-GATG
1 GTCGTCACCATCCCTTTTCATA-TTCGATG
* * * *
22067823 GTCCTCACTATCCCTTTTCATAATCGATA
1 GTCGTCACCATCCCTTTTCATATTCGATG
* *
22067852 GTCG-AAGCTATCCCTTTTCATATTCGATG
1 GTCGTCA-CCATCCCTTTTCATATTCGATG
*
22067881 GTCGTCACCATCCCTTTTCATTATTCGATA
1 GTCGTCACCATCCCTTTTCA-TATTCGATG
** * *
22067911 GTCGAGACTATCCCTTTTCATTAGTCGATG
1 GTCGTCACCATCCCTTTTCA-TATTCGATG
*
22067941 ATCGTCA
1 GTCGTCA
22067948 ATACACCATT
Statistics
Matches: 183, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
28 2 0.01
29 141 0.77
30 40 0.22
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (29 bp):
GTCGTCACCATCCCTTTTCATATTCGATG
Found at i:22067773 original size:58 final size:58
Alignment explanation
Indices: 22067678--22067947 Score: 292
Period size: 58 Copynumber: 4.6 Consensus size: 58
22067668 TTACGATAAC
* * * * *
22067678 CGAAACTATCCATTTTCATAATTTTGATAGTCGTCACCATCCCTTTTCATATTCGATGGT
1 CGAAACCATCCCTTTTCAT-A-GTTGATGGTCGTCACCATCCCTTTTCATATTCGATAGT
* * *
22067738 CAAAACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAGTT-GATGGT
1 CGAAACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATA-TTCGATAGT
*** * * *
22067796 CCTCACCATCCCTTTTCATAGTTGATGGTCCTCACTATCCCTTTTCATAATCGATAGT
1 CGAAACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATATTCGATAGT
* *
22067854 CGAAGCTATCCCTTTTCATA-TTCGATGGTCGTCACCATCCCTTTTCATTATTCGATAGT
1 CGAAACCATCCCTTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCA-TATTCGATAGT
* * * *
22067913 CGAGACTATCCCTTTTCATTAGTCGATGATCGTCA
1 CGAAACCATCCCTTTTCA-TAGTTGATGGTCGTCA
22067948 ATACACCATT
Statistics
Matches: 179, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
57 3 0.02
58 118 0.66
59 29 0.16
60 28 0.16
61 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.38
Consensus pattern (58 bp):
CGAAACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATATTCGATAGT
Found at i:22067811 original size:87 final size:86
Alignment explanation
Indices: 22067701--22067940 Score: 279
Period size: 87 Copynumber: 2.7 Consensus size: 86
22067691 TTTCATAATT
* * *
22067701 TTGATAGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATAGTTGATGG
1 TTGATGGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACTATCCCTTTTCATAGTCGATGG
22067766 TC-ATCA-CCATCCCTTTTCATA
66 TCGA--AGCCATCCCTTTTCATA
* *** *
22067787 GTTGATGGTCCTCACCATCCCTTTTCATAGTT-GATGGTCCTCACTATCCCTTTTCATAATCGAT
1 -TTGATGGTCGTCACCATCCCTTTTCATA-TTCGATGGTCAAAACTATCCCTTTTCATAGTCGAT
* *
22067851 AGTCGAAGCTATCCCTTTTCATA
64 GGTCGAAGCCATCCCTTTTCATA
* * *
22067874 TTCGATGGTCGTCACCATCCCTTTTCATTATTCGATAGTCGAGACTATCCCTTTTCATTAGTCGA
1 TT-GATGGTCGTCACCATCCCTTTTCA-TATTCGATGGTCAAAACTATCCCTTTTCA-TAGTCGA
22067939 TG
63 TG
22067941 ATCGTCAATA
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
86 3 0.02
87 94 0.73
88 25 0.19
89 7 0.05
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (86 bp):
TTGATGGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACTATCCCTTTTCATAGTCGATGG
TCGAAGCCATCCCTTTTCATA
Found at i:22070381 original size:14 final size:16
Alignment explanation
Indices: 22070350--22070382 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
22070340 AAATATTGGT
22070350 TTTTAGCAAAATATGA
1 TTTTAGCAAAATATGA
22070366 TTTTAG-AAAA-ATGA
1 TTTTAGCAAAATATGA
22070380 TTT
1 TTT
22070383 GTTGCGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (16 bp):
TTTTAGCAAAATATGA
Found at i:22079959 original size:14 final size:13
Alignment explanation
Indices: 22079928--22079960 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
22079918 AAACACTCAA
22079928 ATTTTTCAAAAGT
1 ATTTTTCAAAAGT
22079941 ATTTTTCAAAAGT
1 ATTTTTCAAAAGT
*
22079954 ACTTTTC
1 ATTTTTC
22079961 CACAGCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (13 bp):
ATTTTTCAAAAGT
Found at i:22080692 original size:18 final size:18
Alignment explanation
Indices: 22080669--22080703 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22080659 TCAAATCTAA
22080669 CTCTCTCAATTCTCTCAC
1 CTCTCTCAATTCTCTCAC
* *
22080687 CTCTCTTAATTTTCTCA
1 CTCTCTCAATTCTCTCA
22080704 AGTTTTGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (18 bp):
CTCTCTCAATTCTCTCAC
Found at i:22080932 original size:10 final size:10
Alignment explanation
Indices: 22080919--22080943 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22080909 TTTTTTTAAT
22080919 TTTTAAAATA
1 TTTTAAAATA
22080929 TTTTAAAATA
1 TTTTAAAATA
22080939 TTTTA
1 TTTTA
22080944 TTTTGTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:22082535 original size:3 final size:3
Alignment explanation
Indices: 22082527--22082739 Score: 360
Period size: 3 Copynumber: 71.3 Consensus size: 3
22082517 TAAAAGACAT
*
22082527 TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
22082575 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
22082623 TTC TTC TTC TTC TTC TTTC TTC TT- TT- TTC TTT TTC TTC TTC TTT
1 TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
22082667 TTC TTC TTC TTC TTC TTTC TTC TTC TTC -TC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
22082712 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
22082740 ATCTATTTAT
Statistics
Matches: 200, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
2 6 0.03
3 188 0.94
4 6 0.03
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:22086305 original size:21 final size:21
Alignment explanation
Indices: 22086274--22086347 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
22086264 AGTGATAAAC
*
22086274 GGAAACCCATAAGGGTTGAAT
1 GGAAACTCATAAGGGTTGAAT
*
22086295 GGAAGCTCATAAGCGG-TGAAT
1 GGAAACTCATAAG-GGTTGAAT
* * * * *
22086316 TGAAACCCATTAGGGTTAAAC
1 GGAAACTCATAAGGGTTGAAT
22086337 GGAAACTCATA
1 GGAAACTCATA
22086348 TAAGTTAACT
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (21 bp):
GGAAACTCATAAGGGTTGAAT
Found at i:22093463 original size:29 final size:29
Alignment explanation
Indices: 22093431--22093522 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 29
22093421 TCTTTATAGT
22093431 GATCTCTGTTAAAAGAAATCCTTTGTGGC
1 GATCTCTGTTAAAAGAAATCCTTTGTGGC
* *
22093460 GATCTCTGTTAAAAGAAAGCATTTGTGGC
1 GATCTCTGTTAAAAGAAATCCTTTGTGGC
* *
22093489 AATCTCTGTTAAAAG-GATCCCTTTGTGGC
1 GATCTCTGTTAAAAGAAAT-CCTTTGTGGC
22093518 GATCT
1 GATCT
22093523 AAGATAAATG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
28 1 0.02
29 54 0.98
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (29 bp):
GATCTCTGTTAAAAGAAATCCTTTGTGGC
Found at i:22093554 original size:58 final size:58
Alignment explanation
Indices: 22093434--22093578 Score: 138
Period size: 58 Copynumber: 2.5 Consensus size: 58
22093424 TTATAGTGAT
** * *
22093434 CTCTGTTAAAAGAAATCCTTTGTGGCGATCTCTGTTAAAAGAAAGCATTTGTGGCAAT
1 CTCTGTTAAAAGAAATCCTTTGTGGCGATCTAAGATAAAAGAAAGCATTTGTGGCAAA
* * * *
22093492 CTCTGTTAAAAG-GATCCCTTTGTGGCGATCTAAGATAAATGAATG-TTTTGTGGCAAGA
1 CTCTGTTAAAAGAAAT-CCTTTGTGGCGATCTAAGATAAAAGAAAGCATTTGTGGCAA-A
* *
22093550 CTCTG--AAAGGAAAGT-CTTTGTGGCTATCT
1 CTCTGTTAAAAGAAA-TCCTTTGTGGCGATCT
22093579 TTGGAAAGGA
Statistics
Matches: 72, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
56 17 0.24
57 13 0.18
58 42 0.58
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (58 bp):
CTCTGTTAAAAGAAATCCTTTGTGGCGATCTAAGATAAAAGAAAGCATTTGTGGCAAA
Found at i:22095724 original size:12 final size:12
Alignment explanation
Indices: 22095709--22095747 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
22095699 ACACTTGTAC
22095709 CAACACCAATGT
1 CAACACCAATGT
22095721 CAACACCAATGT
1 CAACACCAATGT
** *
22095733 CGTCATCAATGT
1 CAACACCAATGT
22095745 CAA
1 CAA
22095748 TATCAATGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.38, C:0.31, G:0.10, T:0.21
Consensus pattern (12 bp):
CAACACCAATGT
Found at i:22102790 original size:24 final size:24
Alignment explanation
Indices: 22102753--22102813 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
22102743 TCCGGGCTGT
*
22102753 ATAATGGGAAGCTCATAAGAGCC-
1 ATAATAGGAAGCTCATAAGAGCCA
*
22102776 ATAATCAGGAAGCTCATACGAGCCA
1 ATAAT-AGGAAGCTCATAAGAGCCA
*
22102801 ATAATGGGAAGCT
1 ATAATAGGAAGCT
22102814 TCGGAATGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 5 0.15
24 23 0.70
25 5 0.15
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (24 bp):
ATAATAGGAAGCTCATAAGAGCCA
Found at i:22102825 original size:48 final size:47
Alignment explanation
Indices: 22102770--22102888 Score: 125
Period size: 48 Copynumber: 2.5 Consensus size: 47
22102760 GAAGCTCATA
* *
22102770 AGAGCCATAATCAGGAAGCTCATA-CGAGCCAATAATGGGAAGCTTCGG
1 AGAGCCATAATCAGGAAGCTCA-AGCGAGCC-ATAATGGAAAGCTCCGG
* * *
22102818 A-ATGCCATATATCAAGAAGTTCAAGCGAGCCATATTGGAAAGCTCCGG
1 AGA-GCCATA-ATCAGGAAGCTCAAGCGAGCCATAATGGAAAGCTCCGG
*
22102866 AGAGCCATTAATTAGGAAGCTCA
1 AGAGCCA-TAATCAGGAAGCTCA
22102889 CAAAGAGCCT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
47 1 0.02
48 37 0.64
49 20 0.34
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (47 bp):
AGAGCCATAATCAGGAAGCTCAAGCGAGCCATAATGGAAAGCTCCGG
Found at i:22102895 original size:26 final size:26
Alignment explanation
Indices: 22102866--22102934 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
22102856 AAAGCTCCGG
22102866 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATTAGGAAGCTCACAA
** *
22102892 AGAGCC-TTCAATCGGGAAGCTCACGA
1 AGAGCCATT-AATTAGGAAGCTCACAA
22102918 AGAGCCATATAA-TAGGA
1 AGAGCCAT-TAATTAGGA
22102935 CACTCATAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 2 0.06
26 29 0.83
27 3 0.09
28 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATTAGGAAGCTCACAA
Found at i:22105787 original size:38 final size:38
Alignment explanation
Indices: 22105745--22105817 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
22105735 TAAAAAATCA
* *
22105745 ATAAATCCAAAACAG-TACATTAAAACATGTCAATATCG
1 ATAAATCC-AAACAGATACATCAAAACATATCAATATCG
*
22105783 ATAAATCCAAATAGATACATCAAAACATATCAATA
1 ATAAATCCAAACAGATACATCAAAACATATCAATA
22105818 CGGGTACATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 5 0.16
38 26 0.84
ACGTcount: A:0.53, C:0.18, G:0.05, T:0.23
Consensus pattern (38 bp):
ATAAATCCAAACAGATACATCAAAACATATCAATATCG
Found at i:22110326 original size:108 final size:108
Alignment explanation
Indices: 22110137--22110354 Score: 427
Period size: 108 Copynumber: 2.0 Consensus size: 108
22110127 GCAAGTATAA
22110137 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
1 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
22110202 ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
66 ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
22110245 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
1 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
*
22110310 ATATTTTCTGGTAAGTTATACATGTAGAGTAACAAACAGAAGC
66 ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
22110353 AA
1 AA
22110355 AAATACCTCG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (108 bp):
AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
Found at i:22114557 original size:17 final size:18
Alignment explanation
Indices: 22114524--22114557 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22114514 ATAGAGTCAA
*
22114524 CCATTCCTCCCACAACCT
1 CCATTCCTCCAACAACCT
22114542 CCATTCC-CCAACAACC
1 CCATTCCTCCAACAACC
22114558 ATCCTCAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.56, G:0.00, T:0.18
Consensus pattern (18 bp):
CCATTCCTCCAACAACCT
Found at i:22117272 original size:57 final size:58
Alignment explanation
Indices: 22117184--22117310 Score: 184
Period size: 57 Copynumber: 2.2 Consensus size: 58
22117174 GCAATTCGTG
* * * *
22117184 TTACACAGAACTTTATTAGATTTGTAATAATTTGTGTAATAAGGCAATG-TTGTGTAA
1 TTACACAAAACTTTATGAGATCTGTAATAATTTGTGTAATAAGCCAATGTTTGTGTAA
*
22117241 TTACACAAAACTTTATGAGATCTGTAATAATTTGTGTAATTAGCCAATGTTTTGTGTAA
1 TTACACAAAACTTTATGAGATCTGTAATAATTTGTGTAATAAGCCAATG-TTTGTGTAA
*
22117300 TTAAACAAAAC
1 TTACACAAAAC
22117311 ATTACAAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
57 44 0.71
59 18 0.29
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (58 bp):
TTACACAAAACTTTATGAGATCTGTAATAATTTGTGTAATAAGCCAATGTTTGTGTAA
Found at i:22117326 original size:59 final size:59
Alignment explanation
Indices: 22117205--22117399 Score: 227
Period size: 59 Copynumber: 3.3 Consensus size: 59
22117195 TTTATTAGAT
* * * * *
22117205 TTGTAATAATTTGTGTAATAAGGCAATG--TTGTGTAATTACACAAAACTTTATGAGAT-
1 TTGTAATAATTTGTGTAATTAGGCAATGTTTTGTGTAATTAAACAAAACATTA-CAAATA
* *
22117262 CTGTAATAATTTGTGTAATTAGCCAATGTTTTGTGTAATTAAACAAAACATTACAAATA
1 TTGTAATAATTTGTGTAATTAGGCAATGTTTTGTGTAATTAAACAAAACATTACAAATA
* * * * *
22117321 TTGTAACAATTTGCGCAATTAGGTAATGTTTTGTGTAATTATACAAAACATTAC-AATA
1 TTGTAATAATTTGTGTAATTAGGCAATGTTTTGTGTAATTAAACAAAACATTACAAATA
*
22117379 GTTGTAATAATTTGTATAATT
1 -TTGTAATAATTTGTGTAATT
22117400 GAGTATGTTT
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
57 25 0.22
58 7 0.06
59 84 0.72
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.39
Consensus pattern (59 bp):
TTGTAATAATTTGTGTAATTAGGCAATGTTTTGTGTAATTAAACAAAACATTACAAATA
Found at i:22118209 original size:74 final size:74
Alignment explanation
Indices: 22118117--22118254 Score: 231
Period size: 74 Copynumber: 1.9 Consensus size: 74
22118107 ATACAACATA
* * * *
22118117 TTTACTTCACATCAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACTAACAATGTC
1 TTTACTTAACATAAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACAAAAAATGTC
22118182 TATCCGGCC
66 TATCCGGCC
*
22118191 TTTACTTAACATAAAATGATGTTTTTAAGAGGAAACTTGACATTTCAAATTCCACAAAAAATGT
1 TTTACTTAACATAAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACAAAAAATGT
22118255 TTATACAGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 59 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (74 bp):
TTTACTTAACATAAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACAAAAAATGTC
TATCCGGCC
Found at i:22121406 original size:17 final size:17
Alignment explanation
Indices: 22121384--22121428 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
22121374 ATGTTCTTGG
22121384 AGTCACTTTATCATCAT
1 AGTCACTTTATCATCAT
22121401 AGTCACTTTATCATCAT
1 AGTCACTTTATCATCAT
22121418 AGTCACTTTAT
1 AGTCACTTTAT
22121429 GACCAGTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (17 bp):
AGTCACTTTATCATCAT
Found at i:22122832 original size:3 final size:3
Alignment explanation
Indices: 22122824--22122902 Score: 104
Period size: 3 Copynumber: 26.3 Consensus size: 3
22122814 CTTTGATTTG
* *
22122824 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
22122872 AAT AAT GAT CAT GAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
22122903 TTTTTAAAGA
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:22124022 original size:31 final size:29
Alignment explanation
Indices: 22123987--22124085 Score: 99
Period size: 31 Copynumber: 3.3 Consensus size: 29
22123977 TTAACGACTC
* *
22123987 AGTGACTAAAATGTTACAATACGATAACGTA
1 AGTGACTAAAATGTAACAATAC-A-AACATA
* * *
22124018 AGTGACTAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAATACAAACATA
* *
22124047 AGTGACTAAAATGTAACCTAAGACAAACAAA
1 AGTGACTAAAATGTAA-C-AATACAAACATA
22124078 AGTGACTA
1 AGTGACTA
22124086 TTTTGATAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
29 20 0.36
30 2 0.04
31 34 0.61
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.22
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAATACAAACATA
Found at i:22125900 original size:16 final size:16
Alignment explanation
Indices: 22125876--22125945 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
22125866 TGGTTCGCTA
*
22125876 TAATAGAATAGAGCTG
1 TAATAGAATAGAACTG
*
22125892 TAATTGAATAGAACTG
1 TAATAGAATAGAACTG
*
22125908 TAATAGAATAGAGCTG
1 TAATAGAATAGAACTG
*
22125924 TAATGGAATAGAACTG
1 TAATAGAATAGAACTG
22125940 TAATAG
1 TAATAG
22125946 TAATTCAATT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (16 bp):
TAATAGAATAGAACTG
Found at i:22125917 original size:32 final size:32
Alignment explanation
Indices: 22125876--22125945 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
22125866 TGGTTCGCTA
*
22125876 TAATAGAATAGAGCTGTAATTGAATAGAACTG
1 TAATAGAATAGAGCTGTAATGGAATAGAACTG
22125908 TAATAGAATAGAGCTGTAATGGAATAGAACTG
1 TAATAGAATAGAGCTGTAATGGAATAGAACTG
22125940 TAATAG
1 TAATAG
22125946 TAATTCAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (32 bp):
TAATAGAATAGAGCTGTAATGGAATAGAACTG
Found at i:22125983 original size:45 final size:44
Alignment explanation
Indices: 22125925--22126017 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
22125915 ATAGAGCTGT
22125925 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
22125970 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
22126014 AATG
1 AATG
22126018 ATATTGTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:22126026 original size:39 final size:41
Alignment explanation
Indices: 22125925--22126028 Score: 108
Period size: 44 Copynumber: 2.5 Consensus size: 41
22125915 ATAGAGCTGT
22125925 AATGGAATAGA-ACTGTAATAGTAATTCAATTGTTTGGTTG
1 AATGGAATAGATACTGTAATAGTAATTCAATTGTTTGGTTG
* *
22125965 AATGGAATGGAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTG
1 AATGGAATAG-AT---ACTGTAATAGTAATTCAAT-TGTTTGGTTG
*
22126009 AATGGAAT-GATATTGTAATA
1 AATGGAATAGATACTGTAATA
22126029 ACATAAAGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
39 8 0.15
40 9 0.16
41 1 0.02
42 2 0.04
43 2 0.04
44 22 0.40
45 11 0.20
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (41 bp):
AATGGAATAGATACTGTAATAGTAATTCAATTGTTTGGTTG
Found at i:22155725 original size:41 final size:39
Alignment explanation
Indices: 22155669--22155821 Score: 164
Period size: 41 Copynumber: 3.8 Consensus size: 39
22155659 GATCTTTCGG
*
22155669 GGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTC
1 GGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTC
22155708 AGGCTTTTAGCGGCG-TTTTTAAAAAGGCGCCGCTAATGCTC
1 -GGC-TTTAGCGGCGTTTTTTAAAAA-GCGCCGCTAATGCTC
** ** *
22155749 GGGGCTTTAGCATCGTTTTCCAAGAAGCGCCGCTAATGCTC
1 --GGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTC
* * *
22155790 GAGATTTAGTGGCGTTTTTGAAAAAGCGCCGC
1 G-GCTTTAGCGGCGTTTTTTAAAAAGCGCCGC
22155822 AAAAACATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 36 0.38
41 47 0.50
42 10 0.11
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
GGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTC
Found at i:22155814 original size:82 final size:81
Alignment explanation
Indices: 22155665--22155821 Score: 201
Period size: 82 Copynumber: 1.9 Consensus size: 81
22155655 TTGTGATCTT
* ** *
22155665 TCGGGGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTCAGGCTTTTAGCGGCGTTTTTAA
1 TCGGGGCTTTAGCAGCGTTTTCCAAAAAGCGCCGCTAATACTCAGGCATTTAGCGGCGTTTTTAA
22155730 AAAGGCGCCGCTAATGC
66 AAA-GCGCCGCTAATGC
* * * *
22155747 TCGGGGCTTTAGCATCGTTTTCCAAGAAGCGCCGCTAATGCTC-GAG-ATTTAGTGGCGTTTTTG
1 TCGGGGCTTTAGCAGCGTTTTCCAAAAAGCGCCGCTAATACTCAG-GCATTTAGCGGCGTTTTT-
22155810 AAAAAGCGCCGC
64 AAAAAGCGCCGC
22155822 AAAAACATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
81 22 0.34
82 43 0.66
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (81 bp):
TCGGGGCTTTAGCAGCGTTTTCCAAAAAGCGCCGCTAATACTCAGGCATTTAGCGGCGTTTTTAA
AAAGCGCCGCTAATGC
Found at i:22156301 original size:20 final size:20
Alignment explanation
Indices: 22156264--22156303 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22156254 AAATTCTGGT
** *
22156264 TTAAGGGTTGTGATTTAGGG
1 TTAAGGGTTAAGAGTTAGGG
22156284 TTAAGGGTTAAGAGTTAGGG
1 TTAAGGGTTAAGAGTTAGGG
22156304 ATTTAAGGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (20 bp):
TTAAGGGTTAAGAGTTAGGG
Found at i:22156450 original size:54 final size:54
Alignment explanation
Indices: 22156332--22156451 Score: 181
Period size: 54 Copynumber: 2.2 Consensus size: 54
22156322 TGGTGTGAGG
* *
22156332 TTAGGGTTTAAGGTTTAGATTAATTAGTGTGTTTTAATTTATATTAAATAAGGT
1 TTAGGGGTTAGGGTTTAGATTAATTAGTGTGTTTTAATTTATATTAAATAAGGT
*
22156386 TTAGGAGTTAGGGTTTAGATTAATTAGT-T-TTTTAATTTATATATTAAATAAGGT
1 TTAGGGGTTAGGGTTTAGATTAATTAGTGTGTTTTAA-TT-TATATTAAATAAGGT
22156440 TTAGGGGTTAGG
1 TTAGGGGTTAGG
22156452 AGTTAAGGGT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
52 6 0.10
53 3 0.05
54 51 0.85
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.47
Consensus pattern (54 bp):
TTAGGGGTTAGGGTTTAGATTAATTAGTGTGTTTTAATTTATATTAAATAAGGT
Found at i:22156458 original size:21 final size:21
Alignment explanation
Indices: 22156434--22156483 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
22156424 ATATATTAAA
*
22156434 TAAGGTTTAGGGGTTAGGAGT
1 TAAGGTTTAAGGGTTAGGAGT
* *
22156455 TAAGGGTTAAGGGTTAGGGGT
1 TAAGGTTTAAGGGTTAGGAGT
22156476 TAGAGGTT
1 TA-AGGTT
22156484 AAGAGCTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (21 bp):
TAAGGTTTAAGGGTTAGGAGT
Found at i:22156463 original size:14 final size:13
Alignment explanation
Indices: 22156444--22156486 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
22156434 TAAGGTTTAG
22156444 GGGTTAGGAGTTAA
1 GGGTTAGG-GTTAA
*
22156458 GGGTTAAGGGTTAG
1 GGGTT-AGGGTTAA
22156472 GGGTTAGAGGTTAA
1 GGGTTAG-GGTTAA
22156486 G
1 G
22156487 AGCTAGTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 2 0.08
14 20 0.80
15 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.47, T:0.28
Consensus pattern (13 bp):
GGGTTAGGGTTAA
Found at i:22157314 original size:14 final size:14
Alignment explanation
Indices: 22157297--22157334 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
22157287 ATAAAAATCC
22157297 AGTTTATAAAAAAT
1 AGTTTATAAAAAAT
*
22157311 AG-TTATAATAAAT
1 AGTTTATAAAAAAT
*
22157324 ATTTTATAAAA
1 AGTTTATAAAA
22157335 TCACATAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (14 bp):
AGTTTATAAAAAAT
Found at i:22160410 original size:5 final size:5
Alignment explanation
Indices: 22160400--22160425 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22160390 TTTAAATTTG
22160400 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
22160426 CAAACCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:22162689 original size:19 final size:19
Alignment explanation
Indices: 22162665--22162711 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
22162655 TTTATTACTA
22162665 TATTATTATTAGCATT-TAT
1 TATTATTATTA-CATTATAT
* *
22162684 TATTATTGTTATATTATAT
1 TATTATTATTACATTATAT
22162703 TATTATTAT
1 TATTATTAT
22162712 GCATATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (19 bp):
TATTATTATTACATTATAT
Found at i:22162705 original size:22 final size:22
Alignment explanation
Indices: 22162680--22162724 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
22162670 TTATTAGCAT
*
22162680 TTATTATTATTG-TTATATTATA
1 TTATTATTA-TGCATATATTATA
22162702 TTATTATTATGCATATATTATA
1 TTATTATTATGCATATATTATA
22162724 T
1 T
22162725 GCGCATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTATTATGCATATATTATA
Found at i:22164462 original size:16 final size:16
Alignment explanation
Indices: 22164441--22164475 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22164431 TTGTGTTTTG
22164441 TTTTGAATGCATGACA
1 TTTTGAATGCATGACA
* *
22164457 TTTTGACTGCATGGCA
1 TTTTGAATGCATGACA
22164473 TTT
1 TTT
22164476 CATTATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (16 bp):
TTTTGAATGCATGACA
Found at i:22167601 original size:43 final size:43
Alignment explanation
Indices: 22167540--22167641 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 43
22167530 TGTGGTAAAA
* * * * * *
22167540 ATCTTTAGTGGCGCTTGTGGTTGAAGCGTTGTTAAAGGTCATG
1 ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
22167583 ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
1 ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
* *
22167626 ATTTTTAGCGACGTTT
1 ATCTTTAGCGGCGTTT
22167642 TTTCACATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (43 bp):
ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
Found at i:22171849 original size:19 final size:19
Alignment explanation
Indices: 22171825--22171861 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22171815 TTAATGTGCG
*
22171825 AATATATGTATATGTGTGT
1 AATATATATATATGTGTGT
22171844 AATATATATATATGTGTG
1 AATATATATATATGTGTG
22171862 GATCGAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (19 bp):
AATATATATATATGTGTGT
Found at i:22172135 original size:41 final size:41
Alignment explanation
Indices: 22172073--22172248 Score: 280
Period size: 41 Copynumber: 4.3 Consensus size: 41
22172063 GTTTGGAATT
* *
22172073 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
22172114 GGTGATCTAAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
22172155 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22172196 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22172237 GGTGATCCGAAT
1 GGTGATCTGAAT
22172249 ATGATGAATT
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:22172210 original size:82 final size:82
Alignment explanation
Indices: 22172073--22172242 Score: 331
Period size: 82 Copynumber: 2.1 Consensus size: 82
22172063 GTTTGGAATT
22172073 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
22172138 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
*
22172155 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
22172220 CTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCC
22172237 GGTGAT
1 GGTGAT
22172243 CCGAATATGA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 87 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
CTAGCAGGCTAAGTGCC
Found at i:22179475 original size:19 final size:19
Alignment explanation
Indices: 22179451--22179487 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22179441 TTAATGTGCG
*
22179451 AATATATGTATATGTGTGT
1 AATATATATATATGTGTGT
22179470 AATATATATATATGTGTG
1 AATATATATATATGTGTG
22179488 GATCGAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (19 bp):
AATATATATATATGTGTGT
Found at i:22179763 original size:41 final size:41
Alignment explanation
Indices: 22179701--22179957 Score: 408
Period size: 41 Copynumber: 6.3 Consensus size: 41
22179691 GTTTGGAATT
* *
22179701 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
22179742 GGTGATCTAAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
22179783 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22179824 GGTGATCT-AATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
22179864 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22179905 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22179946 GGTGATCCGAAT
1 GGTGATCTGAAT
22179958 ATGATGAATT
Statistics
Matches: 197, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 37 0.19
41 160 0.81
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:22179932 original size:122 final size:123
Alignment explanation
Indices: 22179701--22179957 Score: 408
Period size: 122 Copynumber: 2.1 Consensus size: 123
22179691 GTTTGGAATT
* * * *
22179701 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAGC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATATAAATCAGGCTATAAAC
*
22179766 CTAGCAGGCTAAGTGCCGGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCCGGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* * *
22179824 GGTGATCT-AATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATATGAATCAGGTTATAAAC
1 GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATATAAATCAGGCTATAAAC
* *
22179888 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
66 CTAGCAGGCTAAGTGCCGGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
22179946 GGTGATCCGAAT
1 GGTGATCTGAAT
22179958 ATGATGAATT
Statistics
Matches: 122, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
122 112 0.92
123 10 0.08
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (123 bp):
GGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATATAAATCAGGCTATAAAC
CTAGCAGGCTAAGTGCCGGTGATATGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:22182986 original size:20 final size:20
Alignment explanation
Indices: 22182963--22183009 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
22182953 AGGTTAAGAT
*
22182963 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
22182983 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
22183003 TGAGCTG
1 TGAGCTG
22183010 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:22187025 original size:20 final size:20
Alignment explanation
Indices: 22186996--22187071 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
22186986 ATTTTAAAAT
*
22186996 CAAGTTAAAATGATTTTAAC
1 CAAGTCAAAATGATTTTAAC
*
22187016 CAAGTCAAAATGATTTCAAC
1 CAAGTCAAAATGATTTTAAC
* *
22187036 CAAGTTAAAATCATTTTAA-
1 CAAGTCAAAATGATTTTAAC
22187055 C-AGATCAAAATGATTTT
1 CAAG-TCAAAATGATTTT
22187072 CAAACAAGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
18 2 0.04
19 12 0.25
20 34 0.71
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (20 bp):
CAAGTCAAAATGATTTTAAC
Found at i:22187040 original size:40 final size:40
Alignment explanation
Indices: 22186986--22187082 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 40
22186976 TTTTGAAACA
* *
22186986 ATTTTAAAATCAAGTTAAAATGATTTTAACCA-AGTCAAAATG
1 ATTTTCAAA-CAAGTTAAAATCATTTTAA-CAGA-TCAAAATG
*
22187028 A-TTTCAACCAAGTTAAAATCATTTTAACAGATCAAAATG
1 ATTTTCAAACAAGTTAAAATCATTTTAACAGATCAAAATG
22187067 ATTTTCAAACAAGTTA
1 ATTTTCAAACAAGTTA
22187083 GGATTACTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
39 11 0.22
40 32 0.65
41 5 0.10
42 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (40 bp):
ATTTTCAAACAAGTTAAAATCATTTTAACAGATCAAAATG
Found at i:22189219 original size:25 final size:25
Alignment explanation
Indices: 22189186--22189237 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
22189176 GAGTTGCAAG
*
22189186 ATGCTTATGGTGAATTGGGTTTGGA
1 ATGCCTATGGTGAATTGGGTTTGGA
22189211 ATGCCTATGGTGAATTGGGTTTGGA
1 ATGCCTATGGTGAATTGGGTTTGGA
22189236 AT
1 AT
22189238 TTGAAGTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.06, G:0.35, T:0.38
Consensus pattern (25 bp):
ATGCCTATGGTGAATTGGGTTTGGA
Found at i:22190125 original size:16 final size:16
Alignment explanation
Indices: 22190104--22190135 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22190094 CATTTAGATG
*
22190104 ATTTGCGTAATTCTAA
1 ATTTGCATAATTCTAA
22190120 ATTTGCATAATTCTAA
1 ATTTGCATAATTCTAA
22190136 CATATGTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (16 bp):
ATTTGCATAATTCTAA
Found at i:22191378 original size:12 final size:12
Alignment explanation
Indices: 22191363--22191404 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
22191353 AATCGGAGGT
22191363 GCATCCGGAGTA
1 GCATCCGGAGTA
*
22191375 GCATCCGAAG-A
1 GCATCCGGAGTA
*
22191386 TGTATCCGGAGTA
1 -GCATCCGGAGTA
22191399 GCATCC
1 GCATCC
22191405 AGAGATGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (12 bp):
GCATCCGGAGTA
Found at i:22191392 original size:24 final size:24
Alignment explanation
Indices: 22191365--22191421 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
22191355 TCGGAGGTGC
22191365 ATCCGGAGTAGCATCC-GAAGATGT
1 ATCCGGAGTAGCATCCAG-AGATGT
22191389 ATCCGGAGTAGCATCCAGAGATGT
1 ATCCGGAGTAGCATCCAGAGATGT
22191413 ATCCGGAGT
1 ATCCGGAGT
22191422 TGCAGGCCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (24 bp):
ATCCGGAGTAGCATCCAGAGATGT
Found at i:22193720 original size:10 final size:10
Alignment explanation
Indices: 22193690--22193732 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
22193680 ATTAAAAACA
22193690 AGAGAG-TTG
1 AGAGAGTTTG
*
22193699 AGAGA-CTTG
1 AGAGAGTTTG
*
22193708 AGAGGGTTTG
1 AGAGAGTTTG
22193718 AGAGAGTTTG
1 AGAGAGTTTG
22193728 AGAGA
1 AGAGA
22193733 ATTGAAGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 12 0.41
10 17 0.59
ACGTcount: A:0.33, C:0.02, G:0.42, T:0.23
Consensus pattern (10 bp):
AGAGAGTTTG
Found at i:22193751 original size:10 final size:9
Alignment explanation
Indices: 22193690--22193750 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
22193680 ATTAAAAACA
22193690 AGAGAGTTG
1 AGAGAGTTG
*
22193699 AGAGACTTG
1 AGAGAGTTG
*
22193708 AGAGGGTTTG
1 AGAGAG-TTG
22193718 AGAGAGTTTG
1 AGAGAG-TTG
*
22193728 AGAGAATTG
1 AGAGAGTTG
22193737 A-AGAAGTTG
1 AGAG-AGTTG
22193746 AGAGA
1 AGAGA
22193751 AGGATGTGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
8 2 0.05
9 22 0.51
10 19 0.44
ACGTcount: A:0.36, C:0.02, G:0.39, T:0.23
Consensus pattern (9 bp):
AGAGAGTTG
Found at i:22194133 original size:6 final size:6
Alignment explanation
Indices: 22194122--22194166 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
22194112 ATATTATATA
*
22194122 TGATGG TGATGG TGATGG TGATGG TGATGG CGATGG TGATGG TGA
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGA
22194167 ATGACGATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.18, C:0.02, G:0.49, T:0.31
Consensus pattern (6 bp):
TGATGG
Found at i:22194920 original size:16 final size:16
Alignment explanation
Indices: 22194901--22194941 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
22194891 TGTTTGGGAA
22194901 TTAAAATATTT-AATAT
1 TTAAAAT-TTTGAATAT
22194917 TTAAAATTTTGAATAT
1 TTAAAATTTTGAATAT
*
22194933 TCAAAATTT
1 TTAAAATTT
22194942 ATTGTTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
TTAAAATTTTGAATAT
Found at i:22195350 original size:22 final size:22
Alignment explanation
Indices: 22195300--22195351 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
22195290 CTAATTATGA
22195300 AAATTATAAATTAAAATTTAGG
1 AAATTATAAATTAAAATTTAGG
***
22195322 GGTTTATAAATTAAAATTGT-GG
1 AAATTATAAATTAAAATT-TAGG
22195344 AAATTATA
1 AAATTATA
22195352 TTAGATTCAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (22 bp):
AAATTATAAATTAAAATTTAGG
Found at i:22196230 original size:98 final size:98
Alignment explanation
Indices: 22196056--22196252 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
22196046 GTACAATAAA
*
22196056 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
22196121 CCTTTAGAATCCCAAACTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
22196154 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
22196219 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
22196252 A
1 A
22196253 TTATTTAAAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:22197621 original size:19 final size:19
Alignment explanation
Indices: 22197597--22197671 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
22197587 AATCATATAT
22197597 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
22197616 TCTAAGATTATATATATCATA
1 TCTAAGA-T-TGCATATCATA
**
22197637 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22197656 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
22197672 CTAAAAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 30 0.65
20 2 0.04
21 14 0.30
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:22197845 original size:35 final size:33
Alignment explanation
Indices: 22197798--22197871 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 33
22197788 AGTTCTAATG
* * *
22197798 CTTTTTAAATAAATCTTGAATATTAAAAATTGTAA
1 CTTTTAAAATAAAT-TTGAAAATAAAAAATT-TAA
* *
22197833 GTTTTAAAATAAATTTTAAAATAAAAAATTTAA
1 CTTTTAAAATAAATTTGAAAATAAAAAATTTAA
22197866 CTTTTA
1 CTTTTA
22197872 TGAAATTGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
33 8 0.24
34 13 0.39
35 12 0.36
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (33 bp):
CTTTTAAAATAAATTTGAAAATAAAAAATTTAA
Found at i:22198517 original size:22 final size:24
Alignment explanation
Indices: 22198475--22198518 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
22198465 GTTACAAATT
*
22198475 TTAATCATTTTGTTTTTTTATAAG
1 TTAATCATTTTGTATTTTTATAAG
22198499 TTAAT-ATTTT-TATTTTTATA
1 TTAATCATTTTGTATTTTTATA
22198519 CAATCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 5 0.26
24 5 0.26
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (24 bp):
TTAATCATTTTGTATTTTTATAAG
Found at i:22204394 original size:22 final size:22
Alignment explanation
Indices: 22204366--22204407 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
22204356 ATAAATGATA
22204366 GTTAATTAGTCATAAATGTGGT
1 GTTAATTAGTCATAAATGTGGT
22204388 GTTAATTAGTCATAAATGTG
1 GTTAATTAGTCATAAATGTG
22204408 CGTCGGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (22 bp):
GTTAATTAGTCATAAATGTGGT
Found at i:22206948 original size:3 final size:3
Alignment explanation
Indices: 22206940--22207175 Score: 154
Period size: 3 Copynumber: 80.7 Consensus size: 3
22206930 AAATGCTATC
*
22206940 GAA GAA GAA TAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
22206988 GAA AAA GAA GAA GAA GAA GGAA -AA TAA GAA -AGA GAA GGAA -AA GAA
1 GAA GAA GAA GAA GAA GAA -GAA GAA GAA GAA GA-A GAA -GAA GAA GAA
* * *
22207033 GAA GGA GGA GAA GAA GAA -AA -AA GAA -AA TG-A TAA GAA GAA GGAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA GAA GAA -GAA
* * * *
22207076 -AA GGA GAA GAA GAA GGAA -AA GGA GAA GGA GAA GAA -AA -AA GAG
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * * * * * * * * *
22207118 GAG GAT G-A GGA GGA GAA TAA GAA GTA GTA GTA GTA GTA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
22207165 GAA GAA GAA GA
1 GAA GAA GAA GA
22207176 GAATAGCTCA
Statistics
Matches: 194, Mismatches: 23, Indels: 32
0.78 0.09 0.13
Matches are distributed among these distances:
2 20 0.10
3 161 0.83
4 13 0.07
ACGTcount: A:0.61, C:0.00, G:0.34, T:0.05
Consensus pattern (3 bp):
GAA
Found at i:22207693 original size:130 final size:129
Alignment explanation
Indices: 22207495--22208017 Score: 478
Period size: 130 Copynumber: 4.1 Consensus size: 129
22207485 GAACTTAGGC
* * * * * * * * * *
22207495 TGTGATCGTAAATCAGTGAGTTGTTAGGAGTAGTGATAATAAATTAAGTAACTTAAAGGAGATTG
1 TGTGATCGTAAATCAGCGAGCTATTTGGAGTAG-GATAGTAAATCAACTAACTCAGAGAAGATTG
* * * * *
22207560 TTCATGGTTGTGAACCAATGAACTTAGGTTGTGATTGTAAATCAACGAGCCTTAATAATATCAGT
65 TTCATGATTGTAAATCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGT
* * * * * * *
22207625 TGTGGTTGTAAATTAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAATATTG
1 TGTGATCGTAAATCAGCGAGCTATTTGGAGTAG-GATAGTAAATCAACTAACTCAGAGAAGATTG
* * * *
22207690 TTCATGATTGTAAATCAATGAA-TGTAGGTTGTGATCGTACATC-A-G-G------GAGT-T-AG
65 TTCATGATTGTAAATCAATAAACT-TAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAG
22207743 T
129 T
* * * * * *
22207744 TGTGACTCGTAAATCAGTGAGTTGTTTAGAGGAGTAGTAGTAAATCAACTAACTCAGAGAAGATT
1 TGTGA-TCGTAAATCAGCGAGCTATTTGGAGTAGGA-TAGTAAATCAACTAACTCAGAGAAGATT
* *
22207809 ATTCATGATTGTAAATCAATAAACTTAGGCTT-TGATCGTAAATCAATGAGCCTTAATAATATCA
64 GTTCATGATTGTAAATCAATAAACTTAGG-TTGTGATCGTAAATCAACGAGCCTTAATAATATCA
*
22207873 GC
128 GT
* * * *
22207875 TGTGACCATAAATCAGCGAGCTATTTGGAGTAGTGATAGTAAATCAGCTAACTCAGAGAAGATTT
1 TGTGATCGTAAATCAGCGAGCTATTTGGAGTAG-GATAGTAAATCAACTAACTCAGAGAAGATTG
* ** * *
22207940 TTTATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAGCGAGCCTTAACAATATCAGT
65 TTCATGATTGTAAATCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGT
* *
22208005 TGTGCTCATAAAT
1 TGTGATCGTAAAT
22208018 TAACTGTCAC
Statistics
Matches: 315, Mismatches: 60, Indels: 36
0.77 0.15 0.09
Matches are distributed among these distances:
119 8 0.03
120 82 0.26
121 6 0.02
122 1 0.00
123 1 0.00
127 1 0.00
128 1 0.00
129 6 0.02
130 201 0.64
131 8 0.03
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (129 bp):
TGTGATCGTAAATCAGCGAGCTATTTGGAGTAGGATAGTAAATCAACTAACTCAGAGAAGATTGT
TCATGATTGTAAATCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGT
Found at i:22207759 original size:26 final size:25
Alignment explanation
Indices: 22207717--22207766 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
22207707 ATGAATGTAG
*
22207717 GTTGTGATCGTACATCAGGGAGTTA
1 GTTGTGATCGTAAATCAGGGAGTTA
*
22207742 GTTGTGACTCGTAAATCAGTGAGTT
1 GTTGTGA-TCGTAAATCAGGGAGTT
22207767 GTTTAGAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.24, C:0.12, G:0.30, T:0.34
Consensus pattern (25 bp):
GTTGTGATCGTAAATCAGGGAGTTA
Found at i:22207956 original size:250 final size:249
Alignment explanation
Indices: 22207495--22207984 Score: 619
Period size: 250 Copynumber: 2.0 Consensus size: 249
22207485 GAACTTAGGC
* * * * * *
22207495 TGTGATCGTAAATCAGTGAGTTGTTAGGAGTAGTGATAATAAATTAAGTAACTTAAAGGAGATTG
1 TGTGATCGTAAATCAGTGAGTTGTTAGGAGGAGTGATAATAAATCAACTAACTCAAAGAAGATTA
* * * * *
22207560 TTCATGGTTGTGAACCAATGAACTTAGGTTGTGATTGTAAATCAACGAGCCTTAATAATATCAGT
66 TTCATGATTGTAAACCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGC
**** * *
22207625 TGTGGTTGTAAATTAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAATATTG
131 TGTGACCATAAATCAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAAGATTG
** * *
22207690 TTCATGATTGTAAATCAATGAA-TGTAGGTTGTGATCGTACATCAGGGAGTTAGT
196 TTCATGATCATAAATCAATAAACT-TAGGTTGTGATCGTAAATCAGGGAGTTAGT
* *
22207744 TGTGACTCGTAAATCAGTGAGTTGTTTA-GAGGAGT-AGTAGTAAATCAACTAACTCAGAGAAGA
1 TGTGA-TCGTAAATCAGTGAGTTG-TTAGGAGGAGTGA-TAATAAATCAACTAACTCAAAGAAGA
* *
22207807 TTATTCATGATTGTAAATCAATAAACTTAGGCTT-TGATCGTAAATCAATGAGCCTTAATAATAT
63 TTATTCATGATTGTAAACCAATAAACTTAGG-TTGTGATCGTAAATCAACGAGCCTTAATAATAT
* * * * *
22207871 CAGCTGTGACCATAAATCAGCGAGCTATTTGGAGTAGTGATAGTAAATCAGCTAACTCAGAGAAG
127 CAGCTGTGACCATAAATCAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAAG
* *
22207936 ATTTTTTATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAG
192 ATTGTTCATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAG
22207985 CGAGCCTTAA
Statistics
Matches: 204, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
249 6 0.03
250 192 0.94
251 6 0.03
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.32
Consensus pattern (249 bp):
TGTGATCGTAAATCAGTGAGTTGTTAGGAGGAGTGATAATAAATCAACTAACTCAAAGAAGATTA
TTCATGATTGTAAACCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGC
TGTGACCATAAATCAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAAGATTG
TTCATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAGGGAGTTAGT
Found at i:22209770 original size:15 final size:16
Alignment explanation
Indices: 22209750--22209783 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
22209740 ATTATCATAA
22209750 AATGTGA-ATATGTTT
1 AATGTGATATATGTTT
22209765 AATGTGATATATGTTT
1 AATGTGATATATGTTT
22209781 AAT
1 AAT
22209784 TGAGTGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (16 bp):
AATGTGATATATGTTT
Found at i:22216753 original size:19 final size:19
Alignment explanation
Indices: 22216729--22216765 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
22216719 GTTTACTATT
22216729 CTTTTCTCGACAATAATAA
1 CTTTTCTCGACAATAATAA
22216748 CTTTTCTCGACAATAATA
1 CTTTTCTCGACAATAATA
22216766 TTTATGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (19 bp):
CTTTTCTCGACAATAATAA
Found at i:22224268 original size:21 final size:21
Alignment explanation
Indices: 22224242--22224283 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22224232 TTGTCAAATT
22224242 TTATAAACAT-CATAAAAAAAG
1 TTATAAA-ATGCATAAAAAAAG
*
22224263 TTATAAAATGTATAAAAAAAG
1 TTATAAAATGCATAAAAAAAG
22224284 ACCCTTTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.26
Consensus pattern (21 bp):
TTATAAAATGCATAAAAAAAG
Found at i:22230200 original size:28 final size:28
Alignment explanation
Indices: 22230137--22230201 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
22230127 GCCCTAGGTC
*
22230137 TGTGAACCCTTATGTGAGAACCTGTAAG
1 TGTGAACCCTTATGCGAGAACCTGTAAG
** * *
22230165 TGCAAACCCTTATGCGCGGACCTG-AATG
1 TGTGAACCCTTATGCGAGAACCTGTAA-G
22230193 TGTGAACCC
1 TGTGAACCC
22230202 AGATGTGCAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
27 2 0.07
28 27 0.93
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (28 bp):
TGTGAACCCTTATGCGAGAACCTGTAAG
Found at i:22235223 original size:120 final size:120
Alignment explanation
Indices: 22235084--22235331 Score: 460
Period size: 120 Copynumber: 2.1 Consensus size: 120
22235074 ATTATTAATC
22235084 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
22235149 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* *
22235204 TATATTTTATAGTATTATATATTATGATTTTCTTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
22235269 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
22235324 TATGATTA
1 TAT-ATTA
22235332 AATTATTTAT
Statistics
Matches: 123, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
120 120 0.98
121 3 0.02
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:22235274 original size:61 final size:61
Alignment explanation
Indices: 22235097--22235287 Score: 230
Period size: 61 Copynumber: 3.2 Consensus size: 61
22235087 ATTATATAGT
22235097 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* * ** * * * * *
22235158 ATTATATATTTTTATTAAATTATATTTA-ATAATAATTATGTTAA-ATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTATTAAATTCATATAAGAA-TAT-TTAATATTAAGAATTTTATTA-A
*
22235217 ATTATATATTATGATTTTCTTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
22235278 ATTATATATT
1 ATTATATATT
22235288 TTTATTAAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
58 6 0.06
59 33 0.32
60 14 0.14
61 44 0.43
62 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (61 bp):
ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:22235533 original size:44 final size:45
Alignment explanation
Indices: 22235463--22235558 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
22235453 ATTACAACAT
*
22235463 CATTCCATTCAACCAAATACAAGAATT-CTATTACGCCTCTATTC
1 CATTACATTCAACCAAATACAAGAATTACTATTACGCCTCTATTC
*
22235507 CATTACATTCAACC-AA-ACAATTGAATTACTATTACGTCTCTATTC
1 CATTACATTCAACCAAATACAA--GAATTACTATTACGCCTCTATTC
22235552 CATTACA
1 CATTACA
22235559 CCTCTATTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
42 4 0.09
43 2 0.04
44 18 0.38
45 23 0.49
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.33
Consensus pattern (45 bp):
CATTACATTCAACCAAATACAAGAATTACTATTACGCCTCTATTC
Found at i:22235563 original size:16 final size:16
Alignment explanation
Indices: 22235544--22235574 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22235534 ACTATTACGT
22235544 CTCTATTCCATTACAC
1 CTCTATTCCATTACAC
*
22235560 CTCTATTTCATTACA
1 CTCTATTCCATTACA
22235575 GCGAACCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (16 bp):
CTCTATTCCATTACAC
Found at i:22240353 original size:14 final size:14
Alignment explanation
Indices: 22240334--22240360 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22240324 TTGTCAAGTT
22240334 ACAATTAGGGGATC
1 ACAATTAGGGGATC
22240348 ACAATTAGGGGAT
1 ACAATTAGGGGAT
22240361 TCTTACATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (14 bp):
ACAATTAGGGGATC
Found at i:22241567 original size:61 final size:58
Alignment explanation
Indices: 22241484--22241630 Score: 164
Period size: 61 Copynumber: 2.6 Consensus size: 58
22241474 AGGGTATATG
22241484 TATAT-ATATGAAAATTAAAAATATGTATATAAAGATATATAGATAAATAAGATAT-AAA
1 TATATAATATGAAAATT-AAAATATGTATATAAAGATATATAGAT-AATAAGATATGAAA
* * *
22241542 GTATATAGATATGAAAATTACAAATAAAG-ATAT--ATATATATATATAATAAGATATGAAA
1 -TATATA-ATATGAAAATTA-AAAT-ATGTATATAAAGATATATAGATAATAAGATATGAAA
22241601 TATAT-ATATGAAAATTAAAA-ATGTATATAA
1 TATATAATATGAAAATTAAAATATGTATATAA
22241631 GTGCGTAGAT
Statistics
Matches: 76, Mismatches: 4, Indels: 19
0.77 0.04 0.19
Matches are distributed among these distances:
53 2 0.03
54 4 0.05
55 3 0.04
56 12 0.16
58 15 0.20
59 18 0.24
60 1 0.01
61 19 0.25
62 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (58 bp):
TATATAATATGAAAATTAAAATATGTATATAAAGATATATAGATAATAAGATATGAAA
Found at i:22241590 original size:23 final size:23
Alignment explanation
Indices: 22241548--22241609 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
22241538 TAAAGTATAT
*
22241548 AGATATGAAA-AT-TACA-AATAA
1 AGATATGAAATATATATATAAT-A
*
22241569 AGATAT-ATATATATATATAATA
1 AGATATGAAATATATATATAATA
22241591 AGATATGAAATATATATAT
1 AGATATGAAATATATATAT
22241610 GAAAATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 8 0.24
22 10 0.29
23 14 0.41
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (23 bp):
AGATATGAAATATATATATAATA
Found at i:22241821 original size:20 final size:19
Alignment explanation
Indices: 22241777--22241823 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
22241767 TATATATATG
*
22241777 TATACATATAAAGTATAAA
1 TATATATATAAAGTATAAA
**
22241796 TA-ATATATATAAGTATGTA
1 TATATATATA-AAGTATAAA
22241815 TATATATAT
1 TATATATAT
22241824 GGAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
TATATATATAAAGTATAAA
Found at i:22241881 original size:34 final size:34
Alignment explanation
Indices: 22241813--22241890 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
22241803 TATAAGTATG
* *
22241813 TATATATATA-TGGAAAAAAATTATAGACGTATA
1 TATATATATATTAGAAAAAAATTATAGACGGATA
* *
22241846 TATATATATATTATAAAAAAATGTAT-GATGGATA
1 TATATATATATTAGAAAAAAAT-TATAGACGGATA
*
22241880 TAGATATATAT
1 TATATATATAT
22241891 ATGAATATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 10 0.26
34 25 0.66
35 3 0.08
ACGTcount: A:0.50, C:0.01, G:0.12, T:0.37
Consensus pattern (34 bp):
TATATATATATTAGAAAAAAATTATAGACGGATA
Found at i:22241975 original size:20 final size:21
Alignment explanation
Indices: 22241947--22242006 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
22241937 AACGTTTATA
*
22241947 AAGAGATAT-ATATATACAAT
1 AAGATATATAATATATACAAT
*
22241967 AAGATATATAGATATATATAAT
1 AAGATATATA-ATATATACAAT
*
22241989 AAGATATAAAGATATATA
1 AAGATATATA-ATATATA
22242007 TAAATAGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 8 0.23
22 27 0.77
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.32
Consensus pattern (21 bp):
AAGATATATAATATATACAAT
Found at i:22242007 original size:22 final size:22
Alignment explanation
Indices: 22241956--22242009 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
22241946 AAAGAGATAT
* *
22241956 ATATATACAATAAGATATATAG
1 ATATATATAATAAGATATAAAG
22241978 ATATATATAATAAGATATAAAG
1 ATATATATAATAAGATATAAAG
22242000 ATATATATAA
1 ATATATATAA
22242010 ATAGTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (22 bp):
ATATATATAATAAGATATAAAG
Found at i:22242103 original size:14 final size:13
Alignment explanation
Indices: 22242063--22242117 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 13
22242053 TAAATAAGTA
*
22242063 AATATAAAATAAA
1 AATATAAAATAAT
22242076 AATATAACAATAAT
1 AATATAA-AATAAT
22242090 AATATAAAACTAAT
1 AATATAAAA-TAAT
** *
22242104 GGTATAATATAAT
1 AATATAAAATAAT
22242117 A
1 A
22242118 GTAGTAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 13 0.37
14 22 0.63
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (13 bp):
AATATAAAATAAT
Found at i:22243208 original size:23 final size:21
Alignment explanation
Indices: 22243181--22243254 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 21
22243171 TGACTTGTTT
*
22243181 GCAGGTGCAAGTGGAGTGGTAGA
1 GCAGGTG-AAGTGG-GTGGCAGA
* *
22243204 GCAGGTGGAGTTGGTGGCAGA
1 GCAGGTGAAGTGGGTGGCAGA
**
22243225 GCAGGTGGCGTGGCGGTGGCAGA
1 GCAGGTGAAGT-G-GGTGGCAGA
22243248 GCAGGTG
1 GCAGGTG
22243255 GCGCAGCAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
21 17 0.39
22 4 0.09
23 23 0.52
ACGTcount: A:0.19, C:0.12, G:0.53, T:0.16
Consensus pattern (21 bp):
GCAGGTGAAGTGGGTGGCAGA
Found at i:22243266 original size:23 final size:23
Alignment explanation
Indices: 22243217--22243268 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
22243207 GGTGGAGTTG
** *
22243217 GTGGCAGAGCAGGTGGCGTGGCG
1 GTGGCAGAGCAGGTGGCGCAGCA
22243240 GTGGCAGAGCAGGTGGCGCAGCA
1 GTGGCAGAGCAGGTGGCGCAGCA
22243263 GTGGCA
1 GTGGCA
22243269 AAGGTTAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.17, C:0.19, G:0.52, T:0.12
Consensus pattern (23 bp):
GTGGCAGAGCAGGTGGCGCAGCA
Found at i:22243780 original size:3 final size:3
Alignment explanation
Indices: 22243772--22243808 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
22243762 AAAATTGGCT
22243772 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
22243809 AGTTGCATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22245371 original size:17 final size:16
Alignment explanation
Indices: 22245346--22245378 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
22245336 CATAATAATA
22245346 AATAATAATATATTAT
1 AATAATAATATATTAT
22245362 AATAATTAATATATTAT
1 AATAA-TAATATATTAT
22245379 GTATTACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATAATAATATATTAT
Found at i:22246626 original size:22 final size:22
Alignment explanation
Indices: 22246601--22246643 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
22246591 AATTATTTTA
22246601 AAAAACTATAAAAATTATAAAC
1 AAAAACTATAAAAATTATAAAC
** *
22246623 AAAATTTATAAATATTATAAA
1 AAAAACTATAAAAATTATAAA
22246644 ACTATAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAACTATAAAAATTATAAAC
Found at i:22252139 original size:44 final size:44
Alignment explanation
Indices: 22252086--22252886 Score: 457
Period size: 44 Copynumber: 18.6 Consensus size: 44
22252076 TTTTAATCCA
*
22252086 CTCCCCTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
** * * ** *
22252130 CTCCACTGCAAAGTCAGGGAGATAAGACTTGTGGTT-TT-AATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TT-AGCTTCTTCTGTCTG
* ** *
22252174 CTCCACTGCAACTTCAGGGAGATAAGACT-G--GATGC-GATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTG-TCTG
** * * * **
22252215 CTCTTCTGCAACTTCAGAGAGATAAGATCTGTGATT-TT-AATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGAT-T-AGCTTCTTCTGTCTG
* *
22252259 CTCCACTGTAACTTTC-GGGAGATAAGATTAGCTTCTTCTTTCTG
1 CTCCACTGCAAC-TTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
* *
22252303 CTCCACTGCAACGTT-AGGGAGATAAG---A-CTT-GT-GGT-T-
1 CTCCACTGCAAC-TTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
* *
22252339 CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
* * * * *
22252383 TTCCACTGCAACTTCAGGGAGATGAGACTAG---ATGC-GATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTG-TCTG
** * ** * * **
22252424 CTCTTCTGTAACTTCAGATAAATAAGATCTATGGTT-TT-AATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGAT-TA-GCTTCTTCTGTCTG
* *
22252468 CTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAG-ATTAGCTTCTTCTGTCTG
* * * ** *
22252512 CTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTT-TT-AATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TT-AGCTTCTTCTGTCTG
* * *
22252556 CTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
* * * * * *
22252600 CTCTACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTG-CT-
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTC-TTCTGTCTG
* * * ** * * *
22252643 CT-C-CTACAACTTCAGAGAGATAAGATTTG-TGGTTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCT-GTCTG
* *
22252685 CTCCACTGCAACTTCTGGGAGATAAGATTAGCTTGTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
* * * * * * *
22252729 CTCCACTGCTACATCAGGGAGATAAGACTTGTGGTT-TT-AGCCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TT-AGCTTCTTCTGTCTG
* * ** * *
22252773 CTCCACTGTAACTTCAGGGAGATAAGATTTG-TGGTTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCT-GTCTG
* * *
22252817 CTCCACTGTAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
22252861 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
22252887 GCTGGATGCG
Statistics
Matches: 568, Mismatches: 137, Indels: 104
0.70 0.17 0.13
Matches are distributed among these distances:
35 2 0.00
36 21 0.04
37 1 0.00
38 1 0.00
39 4 0.01
40 10 0.02
41 78 0.14
42 20 0.04
43 21 0.04
44 369 0.65
45 32 0.06
46 9 0.02
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
Found at i:22252229 original size:129 final size:128
Alignment explanation
Indices: 22252086--22252886 Score: 559
Period size: 129 Copynumber: 6.2 Consensus size: 128
22252076 TTTTAATCCA
* **
22252086 CTCCCCTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAAAGTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAG
*
22252151 ATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTG
66 ATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGTTGCG-TCTG
** * * * ** *
22252215 CTCTTCTGCAACTTCAGAGAGATAAGATCTGTGATT-TT-AATCTGCTCCACTGTAACTTTC-GG
1 CTCCACTGCAACTTCAGGGAGATAAGAT-T-AGCTTCTTCTGTCTGCTCCACTGCAAC-TTCAGG
** * *
22252277 GAGATAAGA-TTAGCTTCTTCTT--TCTGCTCCACTGCAACGTT-AGGGAGATAAGACTTG-TG-
63 GAGATAAGACTT-G-TGGTT-TTAATCCGCTCCACTGCAAC-TTCAGGGAGATAAGACTGGTTGC
22252336 GT-T-
124 GTCTG
* * *
22252339 CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTGTCTGTTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAG
* * * ** * ** * ***
22252404 ATGAGACTAGATGCG-----ATCTGCTCTTCTGTAACTTCAGATAAATAAGATCTATGGTTTTAA
66 ATAAGACTTG-TG-GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGG-TTGCG
22252464 TCTG
125 TCTG
* * *
22252468 CTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAG-ATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
* * * * * *
22252532 GATAAGACTTGTGGTTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGT
65 GATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT-G-GT-TGC-GT
22252597 CTG
126 CTG
* * * * * * * *
22252600 CTCTACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTG-CT-CT-C-CTACAACTTCAGAGA
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTC-TTCTGTCTGCTCCACTGCAACTTCAGGGA
* * * *
22252661 GATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCTGGGAGATAAGATTAGCTTGTTCTGT
65 GATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT-GGTTG--C-GT
22252726 CTG
126 CTG
* * * * * * * *
22252729 CTCCACTGCTACATCAGGGAGATAAGACTTGTGGTT-TT-AGCCCGCTCCACTGTAACTTCAGGG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TT-AGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * * * * * *
22252792 AGATAAGATTTGTGGTTTTAATCTGCTCCACTGTAACTTTAGGGAGATAGGATTAGCTTCTTCTG
64 AGATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT-G-GT-TGC-G
22252857 TCTG
125 TCTG
22252861 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
22252887 GCTGGATGCG
Statistics
Matches: 526, Mismatches: 102, Indels: 85
0.74 0.14 0.12
Matches are distributed among these distances:
120 2 0.00
121 22 0.04
122 4 0.01
123 6 0.01
124 51 0.10
125 2 0.00
126 2 0.00
127 4 0.01
128 10 0.02
129 241 0.46
130 16 0.03
131 12 0.02
132 146 0.28
133 7 0.01
134 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (128 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGTTGCGTCTG
Found at i:22252262 original size:85 final size:85
Alignment explanation
Indices: 22252001--22252940 Score: 339
Period size: 88 Copynumber: 10.9 Consensus size: 85
22251991 CTTCTGTCCT
* * * * *
22252001 CTCCACTGTAACTTCATGGAGATAAGACTGGATGCGATCTGCCCTACTGTAACTTCAGAGAAATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* *
22252066 ATATCTGTGGTTTTAATCCA
66 AGATCTGTGGTTTTAATCCG
* * ** * * ** *
22252086 CTCCCCTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTG-TCTGCTCCACTGCAAAGTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGACT-G--GATGC-GATCTGCTCTACTGCAACTTCAGAGA
22252150 GATAAGA-CTTGTGGTTTTAATCCG
62 GATAAGATC-TGTGGTTTTAATCCG
*
22252174 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* *
22252239 AGATCTGTGATTTTAATCTG
66 AGATCTGTGGTTTTAATCCG
* * ** * ** * *
22252259 CTCCACTGTAACTTTC-GGGAGATAAGATTAGCTTCTTCTTTCTGCTCCACTGCAACGTT-AGGG
1 CTCCACTGCAAC-TTCAGGGAGATAAGACT-G--GATGCGATCTGCTCTACTGCAAC-TTCAGAG
22252322 AGATAAGA-CTTGTGG---T--T---
61 AGATAAGATC-TGTGGTTTTAATCCG
* * * ** * * * *
22252339 CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTG-TCTGTTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGACT-G--GATGC-GATCTGCTCTACTGCAACTTCAGAGA
* * * *** *
22252403 GATGAGA-C--TAGATGCGATCTG
62 GATAAGATCTGTGGTTTTAATCCG
** * ** * * *** * * * *
22252424 CTCTTCTGTAACTTCAGATAAATAAGATCTATGGTTTTAATCTGCTCCACTGCAACTTCTGGGGG
1 CTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGCGATCTGCTCTACTGCAACTTCAGAGAG
* * ** *
22252489 AT-AGAAT-T-AGCTTCTTCTGTCTG
63 ATAAG-ATCTGTGGTT-TT-AATCCG
* * *** * * * * *
22252512 CTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTTAATCCGCTCCACTACAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGAC---TGGATGCGATCTGCTCTACTGCAACTTCAGAGAG
* * * ** *
22252577 ATAGGAT-T-AGCTTCTTCTGTCTG
63 ATAAGATCTGTGGTT-TT-AATCCG
* * * * *
22252600 CTCTACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
*
22252665 AGATTTGTGGTTTTAATCCG
66 AGATCTGTGGTTTTAATCCG
* * ** * * * *
22252685 CTCCACTGCAACTTCTGGGAGATAAGATTAGCTTGTTCTG-TCTGCTCCACTGCTACATCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGACT-GGATG--C-GATCTGCTCTACTGCAACTTCAGAGA
**
22252749 GATAAGA-CTTGTGGTTTTAGCCCG
62 GATAAGATC-TGTGGTTTTAATCCG
* * * *** * * * *
22252773 CTCCACTGTAACTTCAGGGAGATAAGATTTGTGGTTTTAATCTGCTCCACTGTAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGA---CTGGATGCGATCTGCTCTACTGCAACTTCAGAGAG
* * * ** *
22252838 ATAGGAT-T-AGCTTCTTCTGTCTG
63 ATAAGATCTGTGGTT-TT-AATCCG
* * * *
22252861 CTCCACTGCAACTTCAGGGAGATAAGGCTGGATGCGATTTGCTATTCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
22252926 AGATCTGTGGTTTTA
66 AGATCTGTGGTTTTA
22252941 CTGATCTGTT
Statistics
Matches: 649, Mismatches: 155, Indels: 102
0.72 0.17 0.11
Matches are distributed among these distances:
77 2 0.00
79 5 0.01
80 58 0.09
82 1 0.00
83 1 0.00
84 3 0.00
85 223 0.34
86 18 0.03
87 14 0.02
88 315 0.49
89 5 0.01
90 3 0.00
91 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (85 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAATCCG
Found at i:22252290 original size:173 final size:173
Alignment explanation
Indices: 22252001--22252338 Score: 525
Period size: 173 Copynumber: 2.0 Consensus size: 173
22251991 CTTCTGTCCT
* * *
22252001 CTCCACTGTAACTTCATGGAGATAAGACTGGATGCGATCTGCCCTACTGTAACTTCAGAGAAATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAAATA
* * *
22252066 ATATCTGTGGTTTTAATCCACTCCCCTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGC
66 AGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGC
22252131 TCCACTGCAAAGTCAGGGAGATAAGACTTGTGGTTTTAATCCG
131 TCCACTGCAAAGTCAGGGAGATAAGACTTGTGGTTTTAATCCG
* * *
22252174 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAAATA
** * *
22252239 AGATCTGTGATTTTAATCTGCTCCACTGTAACTTTC-GGGAGATAAGATTAGCTTCTTCTTTCTG
66 AGATCTGTGATTTTAATCCACTCCACTGCAAC-TTCAGGGAGATAAGATTAGCTTCTTCTGTCTG
* *
22252303 CTCCACTGCAACGTTAGGGAGATAAGACTTGTGGTT
130 CTCCACTGCAAAGTCAGGGAGATAAGACTTGTGGTT
22252339 CTCCACTGCA
Statistics
Matches: 149, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
173 146 0.98
174 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (173 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAAATA
AGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGC
TCCACTGCAAAGTCAGGGAGATAAGACTTGTGGTTTTAATCCG
Found at i:22252656 original size:217 final size:216
Alignment explanation
Indices: 22252173--22252801 Score: 916
Period size: 217 Copynumber: 2.9 Consensus size: 216
22252163 GTTTTAATCC
*
22252173 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
* * *
22252238 AAGATCTGTGATTTTAATCTGCTCCACTGTAACTT-TCGGGAGATAAGATTAGCTTCTTCTTTCT
66 AAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCT-GGGAGATAAGATTAGCTTCTTCTGTCT
* *
22252302 GCTCCACTGCAACGTTAGGGAGATAAGACTTGTGG---T-T---CTCCACTGCAAATTCAGGGAG
130 GCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTTATCCGCTCCACTGCAACTTCAGGGAG
22252360 ATAGGATTAGCTTCTTCTGTCT
195 ATAGGATTAGCTTCTTCTGTCT
* * * * *
22252382 GTTCCACTGCAACTTCAGGGAGATGAGACTAGATGCGATCTGCTCTTCTGTAACTTCAGATAAAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
* *
22252447 AAGATCTATGGTTTTAATCTGCTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCT
66 AAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCTGGGAGATAAG-ATTAGCTTCTTCTGTCT
* *
22252511 GCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTTAATCCGCTCCACTACAACTTTAGGGA
130 GCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTT-ATCCGCTCCACTGCAACTTCAGGGA
22252576 GATAGGATTAGCTTCTTCTGTCT
194 GATAGGATTAGCTTCTTCTGTCT
* * * *
22252599 GCTCTACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
* * *
22252664 AAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCTGGGAGATAAGATTAGCTTGTTCTGTCTG
66 AAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGTCTG
* * * *
22252729 CTCCACTGCTACATCAGGGAGATAAGACTTGTGGTTTTAGCCCGCTCCACTGTAACTTCAGGGAG
131 CTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTTA-TCCGCTCCACTGCAACTTCAGGGAG
*
22252794 ATAAGATT
195 ATAGGATT
22252802 TGTGGTTTTA
Statistics
Matches: 372, Mismatches: 36, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
208 2 0.01
209 147 0.40
210 1 0.00
212 1 0.00
214 1 0.00
216 1 0.00
217 217 0.58
218 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (216 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGTCTG
CTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTTATCCGCTCCACTGCAACTTCAGGGAGA
TAGGATTAGCTTCTTCTGTCT
Found at i:22252819 original size:217 final size:215
Alignment explanation
Indices: 22252129--22252840 Score: 897
Period size: 217 Copynumber: 3.3 Consensus size: 215
22252119 TCTTCTGTCT
* * * *
22252129 GCTCCACTGCAAAGTCAGGGAGATAAGACTT-G-TGGTTTTAATCCGCTCCACTGCAACTTCAGG
1 GCTCCACTGCAAATTCAGGGAGATAAGA-TTAGCTGCTTCT-ATCTGCTCCACTGCAACTTCAGG
* *
22252192 GAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATC
64 GAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATC
* * *
22252257 TGCTCCACTGTAACTT-TCGGGAGATAAGATTAGCTTCTTCTTTCTGCTCCACTGCAACGTTAGG
129 TGCTCCACTGCAACTTCT-GGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGG
22252321 GAGATAAGACTTGTGG--TT---
193 GAGATAAGACTTGTGGTTTTACC
* * * *
22252339 -CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTGTCTGTTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAAATTCAGGGAGATAAGATTAGCTGCTTCTATCTGCTCCACTGCAACTTCAGGGA
* * * * *
22252403 GATGAGACTAGATGCGATCTGCTCTTCTGTAACTTCAGATAAATAAGATCTATGGTTTTAATCTG
66 GATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
*
22252468 CTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGGA
131 CTCCACTGCAACTTCTGGGAGATAAG-ATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGGA
22252532 GATAAGACTTGTGGTTTTAATCC
195 GATAAGACTTGTGGTTTT-A-CC
* * * * * * * *
22252555 GCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCTGCTCTACTGCAACTTTAGGGA
1 GCTCCACTGCAAATTCAGGGAGATAAGATTAGCTGCTTCTATCTGCTCCACTGCAACTTCAGGGA
* * * *
22252620 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGATTTGTGGTTTTAATCCG
66 GATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
* * *
22252685 CTCCACTGCAACTTCTGGGAGATAAGATTAGCTTGTTCTGTCTGCTCCACTGCTACATCAGGGAG
131 CTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGGAG
22252750 ATAAGACTTGTGGTTTTAGCCC
196 ATAAGACTTGTGGTTTTA--CC
* * * * * * *
22252772 GCTCCACTGTAACTTCAGGGAGATAAGATTTG-TGGTTTTAATCTGCTCCACTGTAACTTTAGGG
1 GCTCCACTGCAAATTCAGGGAGATAAGATTAGCTGCTTCT-ATCTGCTCCACTGCAACTTCAGGG
22252836 AGATA
65 AGATA
22252841 GGATTAGCTT
Statistics
Matches: 437, Mismatches: 50, Indels: 23
0.86 0.10 0.05
Matches are distributed among these distances:
208 4 0.01
209 175 0.40
210 5 0.01
211 2 0.00
216 5 0.01
217 244 0.56
218 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (215 bp):
GCTCCACTGCAAATTCAGGGAGATAAGATTAGCTGCTTCTATCTGCTCCACTGCAACTTCAGGGA
GATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
CTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGGAG
ATAAGACTTGTGGTTTTACC
Found at i:22253809 original size:26 final size:26
Alignment explanation
Indices: 22253780--22253829 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22253770 CAAGTATCTT
22253780 GAAAAGAACAAAGTTTTCCAAGAATA
1 GAAAAGAACAAAGTTTTCCAAGAATA
*
22253806 GAAAAGAATAAAGTTTTCCAAGAA
1 GAAAAGAACAAAGTTTTCCAAGAA
22253830 CAACAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (26 bp):
GAAAAGAACAAAGTTTTCCAAGAATA
Found at i:22260340 original size:44 final size:44
Alignment explanation
Indices: 22260284--22260368 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
22260274 TTAATAGGTC
*
22260284 TAAGTCATTTAATTGGTCTAAATTATTACAGCAACTTAAGTGTT
1 TAAGTCATTTAATTGGTCTAAATTATTACAGCAAATTAAGTGTT
* ** *
22260328 TAAGTTATTTAATTTTTCTAGATTATTACAGCAAATTAAGT
1 TAAGTCATTTAATTGGTCTAAATTATTACAGCAAATTAAGT
22260369 TGTCTTAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (44 bp):
TAAGTCATTTAATTGGTCTAAATTATTACAGCAAATTAAGTGTT
Found at i:22269030 original size:44 final size:44
Alignment explanation
Indices: 22268974--22269058 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
22268964 TTAATAGGTC
* *
22268974 TAAGTCATTTAATTGGTCTAAATTATTACAGCAACTTAAGTGTT
1 TAAGTCATTTAATTGGTCTAAATTACTACAGCAAATTAAGTGTT
* ** *
22269018 TAAGTTATTTAATTTTTCTAGATTACTACAGCAAATTAAGT
1 TAAGTCATTTAATTGGTCTAAATTACTACAGCAAATTAAGT
22269059 TGTCTTAAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (44 bp):
TAAGTCATTTAATTGGTCTAAATTACTACAGCAAATTAAGTGTT
Found at i:22275947 original size:44 final size:47
Alignment explanation
Indices: 22275897--22276000 Score: 133
Period size: 44 Copynumber: 2.3 Consensus size: 47
22275887 GGTCTAAGTC
* * * *
22275897 ATTTAATTGGTCTAAATTATTACAGCAACTTAAG-TGT-TTAAA-TT
1 ATTTAATTTGTCTAAATTACTACAGCAAATTAAGTTGTCTTAAACTA
* *
22275941 ATTTAATTTTTCTAGATTACTACAGCAAATTAAGTTGTCTTAAACTA
1 ATTTAATTTGTCTAAATTACTACAGCAAATTAAGTTGTCTTAAACTA
22275988 ATTTAATTTGTCT
1 ATTTAATTTGTCT
22276001 TGTTTGCAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 29 0.58
45 3 0.06
46 5 0.10
47 13 0.26
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.45
Consensus pattern (47 bp):
ATTTAATTTGTCTAAATTACTACAGCAAATTAAGTTGTCTTAAACTA
Found at i:22280300 original size:23 final size:22
Alignment explanation
Indices: 22280274--22280330 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
22280264 AGTAAAAATG
22280274 AATGCAAAATAATAAATGATGAC
1 AATGCAAAATAATAAATGAT-AC
*
22280297 AATG-TAAAT-A-AAATGATAC
1 AATGCAAAATAATAAATGATAC
*
22280316 AA-GCAAAACAATAAA
1 AATGCAAAATAATAAA
22280331 CAATAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 8 0.29
21 4 0.14
22 4 0.14
23 4 0.14
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AATGCAAAATAATAAATGATAC
Found at i:22280850 original size:3 final size:3
Alignment explanation
Indices: 22280844--22280870 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
22280834 ATAATAAATG
22280844 CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA
22280871 TAATAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Done.