Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 78 of 172
Found at i:22280875 original size:3 final size:3
Alignment explanation
Indices: 22280869--22280947 Score: 133
Period size: 3 Copynumber: 26.3 Consensus size: 3
22280859 CAACAACAAC
22280869 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
22280917 AAT AAT AAT AAT AGT AAT AA- AGAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT A
22280948 CTATAGCAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 1 0.01
3 70 0.97
4 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22281694 original size:6 final size:6
Alignment explanation
Indices: 22281683--22281732 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
22281673 TGTAATTTCG
* * *
22281683 AAATAA AAAT-A AAATAA AAATAA AACAAAA AAATAT AAAT-G AAATAA
1 AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA AAATAA AAATAA
22281730 AAA
1 AAA
22281733 AAAGACCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
5 9 0.25
6 22 0.61
7 5 0.14
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:22281697 original size:11 final size:11
Alignment explanation
Indices: 22281683--22281713 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
22281673 TGTAATTTCG
22281683 AAATAAAAATA
1 AAATAAAAATA
22281694 AAATAAAAATA
1 AAATAAAAATA
*
22281705 AAACAAAAA
1 AAATAAAAA
22281714 AATATAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:22281717 original size:19 final size:19
Alignment explanation
Indices: 22281693--22281734 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22281683 AAATAAAAAT
22281693 AAAATAAAAATAAAACAAA
1 AAAATAAAAATAAAACAAA
* * *
22281712 AAAATATAAATGAAATAAA
1 AAAATAAAAATAAAACAAA
22281731 AAAA
1 AAAA
22281735 AGACCTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAATAAAAATAAAACAAA
Found at i:22281717 original size:24 final size:23
Alignment explanation
Indices: 22281687--22281735 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
22281677 ATTTCGAAAT
22281687 AAAAATA-AAATAAAAATAAAACAA
1 AAAAATATAAAT-AAAATAAAA-AA
*
22281711 AAAAATATAAATGAAATAAAAAA
1 AAAAATATAAATAAAATAAAAAA
22281734 AA
1 AA
22281736 GACCTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 15 0.65
25 4 0.17
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAAATATAAATAAAATAAAAAA
Found at i:22282593 original size:44 final size:44
Alignment explanation
Indices: 22282543--22282734 Score: 126
Period size: 44 Copynumber: 4.4 Consensus size: 44
22282533 ATCTGCTCTG
22282543 CTACTGCTTAGGGTGACAGAATCTACAGTCTTCAACCTACTCCA
1 CTACTGCTTAGGGTGACAGAATCTACAGTCTTCAACCTACTCCA
* * * * * * *
22282587 CTACTGCTTAGGGTGATAGGA-CTA-ATGGCTTAAATCTGCTTC-
1 CTACTGCTTAGGGTGACAGAATCTACA-GTCTTCAACCTACTCCA
* * * * * * * *
22282629 TTCACTG-TATTGGGAAGATAAGATTC-ACCA-TCTTCGATCTGCTCCA
1 CT-ACTGCT-TAGGG-TGA-CAGAATCTA-CAGTCTTCAACCTACTCCA
* * *
22282675 CAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCA
1 CTACTGCTTAGGGTGACAGAATCTACAGTCTTCAACCTACTCCA
22282719 CTACTGCTTAGGGTGA
1 CTACTGCTTAGGGTGA
22282735 TAGGACTAAT
Statistics
Matches: 108, Mismatches: 28, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
42 3 0.03
43 29 0.27
44 51 0.47
45 22 0.20
46 2 0.02
47 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
CTACTGCTTAGGGTGACAGAATCTACAGTCTTCAACCTACTCCA
Found at i:22282638 original size:132 final size:132
Alignment explanation
Indices: 22282392--22282937 Score: 867
Period size: 132 Copynumber: 4.1 Consensus size: 132
22282382 GTCTGCTCCA
* * * * * **
22282392 CATCTTTGATCTTCTCCTCTACTACTTAGGGGGGACAGAATCTGTAATCTTTGACCTACTCCACT
1 CATCTTCGATCTGCTCCACTACTACTTA-GGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
*
22282457 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCATTGTATTGGGAAGATAAGATT
65 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
22282522 CAC
130 CAC
** * * *
22282525 CATCTTCGATCTGCTCTGCTACTGCTTAGGGTGACAGAATCTACAGTCTTCAACCTACTCCACTA
1 CATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTA
*
22282590 CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTTCACTGTATTGGGAAGATAAGATTC
66 CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTC
22282655 AC
131 AC
* *
22282657 CATCTTCGATCTGCTCCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTA
1 CATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTA
* * *
22282722 CTGCTTAGGGTGATAGGACTAATGGCATAAATCTACTTCTCCGCTGTATTGGGAAGATAAGATTC
66 CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTC
22282787 AC
131 AC
* *
22282789 CATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATATTCAACCTACCCCACTA
1 CATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTA
* *
22282854 CTGCTTATGGTGATAGGACTAATGGCTTAAATCTGCTTCTCGACTGTATTGGGAAGATAAGATTC
66 CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTC
22282919 AC
131 AC
*
22282921 CATCTTCGATCTACTCC
1 CATCTTCGATCTGCTCC
22282938 GCTGCCAAAT
Statistics
Matches: 381, Mismatches: 32, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
132 358 0.94
133 23 0.06
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
CATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTA
CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTC
AC
Found at i:22282972 original size:46 final size:46
Alignment explanation
Indices: 22282922--22284438 Score: 2127
Period size: 46 Copynumber: 33.0 Consensus size: 46
22282912 AAGATTCACC
**
22282922 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
** *
22282968 ATCTTCGATCTTCTCTGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
22283014 ATCTTCGATCCCCTCTGCTGCCAAATACAAGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
22283060 ATCTTCGATCCCCTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
22283106 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCC
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
22283152 ATCTTCGATCCCCTCCGCTGCCAATTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * * * *
22283198 ATCCTT-GATCTCTTCCGCTGCCAAATATAAGAAGATAAAATCTGCT
1 AT-CTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* ** * *
22283244 CTCTTCGATCTTCTCCGCTACCAAATACAGGAATACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
22283290 ATTTTCGATCCCCTCTGCTACCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
22283336 ATCTTCGATCCCCTCCGCTGCCAATTACAAGAAGACAAGATCTGTT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * * * *
22283382 ATCCTCGATCTCTTCTGCTGCCAAATACATGAAGATAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
** *
22283428 ATCTTCGATCTTCTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
22283474 ATCTTCGATCCCCTCCGCTGCCAAATACAAGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
22283520 ATCTTCGATCCCTTCCGCTGCCAAATACAGGAAGATAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
22283566 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
22283612 ATCTTCGATCCCTTCTGCTACCAATTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
22283658 ATCTTCGATCTCTTCCGCTGCTAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
22283704 ATCCTCGATCCCCTCCGCTACCAAATACTGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
22283750 ATCTTCGATCTCTTCCGCTGCCAAATACATGAAGATAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
22283796 ATCTTTGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGTT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
22283842 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
22283888 ATCTTTGATCCCCTCCGCTGCCAATTATAGGAAGGCAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * * * *
22283934 ATCCTCGATCTCCTTCGCTGTCAAATACATGAAGATAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*** * *
22283980 ATCTTCGATCTTTTCCGCTGCCAAATACAGGAAGATAAGATTTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
22284026 ATCTTCGATCGCCTCTGCTGCGAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
22284072 ATCTTCAATCCCCTCCCCTGCCAATTATAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
22284118 ATCCTCGATCTCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
** *
22284164 ATCTTCGATCTTCTTCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
22284210 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
22284256 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTTCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
22284302 ATCTTCGATCCCCACCGCTGCTAATTACAGGAAGACAAGATTTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * * *
22284348 ATCCTCGATCTCCTCAGCTGCCAAATACAGAAAGATAAGATCTGCT
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * * *
22284394 ATTTTCGATCTCCTTCGCTGCCAAATACAGGACGATAAGATCTGC
1 ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
22284439 AACTTCATTG
Statistics
Matches: 1305, Mismatches: 164, Indels: 4
0.89 0.11 0.00
Matches are distributed among these distances:
45 3 0.00
46 1299 1.00
47 3 0.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (46 bp):
ATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
Found at i:22285643 original size:9 final size:9
Alignment explanation
Indices: 22285629--22285661 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
22285619 TACTTTTTCA
22285629 TTTTTCATT
1 TTTTTCATT
22285638 TTTTTCATT
1 TTTTTCATT
22285647 TTTTTCATCT
1 TTTTTCAT-T
22285657 TTTTT
1 TTTTT
22285662 TTTCATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTCATT
Found at i:22285663 original size:13 final size:14
Alignment explanation
Indices: 22285645--22285676 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
22285635 ATTTTTTTCA
22285645 TTTTTTTCATC-TT
1 TTTTTTTCATCATT
22285658 TTTTTTTCATCATT
1 TTTTTTTCATCATT
22285672 TTTTT
1 TTTTT
22285677 GTTTGAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTTCATCATT
Found at i:22285664 original size:25 final size:25
Alignment explanation
Indices: 22285622--22285676 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
22285612 CCATTTTTAC
**
22285622 TTTTTCATTTTTCATTTTTTTCATT
1 TTTTTCATTTTTCATTTTCATCATT
*
22285647 TTTTTCATCTTTT-TTTTTCATCATT
1 TTTTTCAT-TTTTCATTTTCATCATT
22285672 TTTTT
1 TTTTT
22285677 GTTTGAGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTTCATTTTTCATTTTCATCATT
Found at i:22286523 original size:10 final size:10
Alignment explanation
Indices: 22286503--22286564 Score: 76
Period size: 10 Copynumber: 6.3 Consensus size: 10
22286493 AATTTTTGAC
22286503 TTTGA-TTTT
1 TTTGATTTTT
22286512 TTTGATTTTT
1 TTTGATTTTT
22286522 TTTGATTTTT
1 TTTGATTTTT
22286532 TTTGATTTTT
1 TTTGATTTTT
*
22286542 TGTT-TTTTTT
1 T-TTGATTTTT
22286552 GTTTG-TTTTT
1 -TTTGATTTTT
22286562 TTT
1 TTT
22286565 TTGAGTCTGA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
9 8 0.17
10 37 0.77
11 3 0.06
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.82
Consensus pattern (10 bp):
TTTGATTTTT
Found at i:22286540 original size:17 final size:17
Alignment explanation
Indices: 22286503--22286568 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 17
22286493 AATTTTTGAC
*
22286503 TTTGATTTTTTTGATTTTT
1 TTTGTTTTTTTTGA--TTT
22286522 TTTGATTTTTTTTGATTT
1 TTTG-TTTTTTTTGATTT
22286540 TTTGTTTTTTTTG-TTT
1 TTTGTTTTTTTTGATTT
*
22286556 GTT-TTTTTTTTGA
1 TTTGTTTTTTTTGA
22286569 GTCTGAACTC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
15 9 0.21
16 5 0.12
17 9 0.21
18 7 0.16
19 4 0.09
20 9 0.21
ACGTcount: A:0.08, C:0.00, G:0.12, T:0.80
Consensus pattern (17 bp):
TTTGTTTTTTTTGATTT
Found at i:22286563 original size:29 final size:29
Alignment explanation
Indices: 22286503--22286562 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
22286493 AATTTTTGAC
22286503 TTTGATTTTTTTGATTTTTTTTGATTTTT
1 TTTGATTTTTTTGATTTTTTTTGATTTTT
*
22286532 TTTGA-TTTTTTG-TTTTTTTTGTTTGTTT
1 TTTGATTTTTTTGATTTTTTTTGATT-TTT
22286560 TTT
1 TTT
22286563 TTTTGAGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 11 0.38
28 13 0.45
29 5 0.17
ACGTcount: A:0.07, C:0.00, G:0.12, T:0.82
Consensus pattern (29 bp):
TTTGATTTTTTTGATTTTTTTTGATTTTT
Found at i:22288632 original size:19 final size:17
Alignment explanation
Indices: 22288610--22288652 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 17
22288600 GTGAAATTTG
22288610 ATGCATGCAATGAAATGCA
1 ATGCATGC-ATGAAATG-A
22288629 ATGCAGATGCATGAAATGA
1 ATGC--ATGCATGAAATGA
22288648 ATGCA
1 ATGCA
22288653 AAAAAGAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.05
19 9 0.41
20 8 0.36
21 4 0.18
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (17 bp):
ATGCATGCATGAAATGA
Found at i:22290529 original size:23 final size:22
Alignment explanation
Indices: 22290503--22290559 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
22290493 AGTAAAAATG
22290503 AATGCAAAATAATAAATGATGAC
1 AATGCAAAATAATAAATGAT-AC
*
22290526 AATG-TAAAT-A-AAATGATAC
1 AATGCAAAATAATAAATGATAC
*
22290545 AA-GCAAAACAATAAA
1 AATGCAAAATAATAAA
22290560 CAATAAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 8 0.29
21 4 0.14
22 4 0.14
23 4 0.14
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AATGCAAAATAATAAATGATAC
Found at i:22291099 original size:3 final size:3
Alignment explanation
Indices: 22291080--22291140 Score: 88
Period size: 3 Copynumber: 20.3 Consensus size: 3
22291070 TAAATGCAAC
* *
22291080 AAT AGT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22291128 AA- AGAT AAT AAT A
1 AAT A-AT AAT AAT A
22291141 CTATAGCAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
2 1 0.02
3 50 0.96
4 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22291905 original size:11 final size:11
Alignment explanation
Indices: 22291891--22291921 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
22291881 TGTAATTTCG
22291891 AAATAAAAATA
1 AAATAAAAATA
22291902 AAATAAAAATA
1 AAATAAAAATA
*
22291913 AAACAAAAA
1 AAATAAAAA
22291922 AATATAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:22291925 original size:19 final size:19
Alignment explanation
Indices: 22291901--22291942 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22291891 AAATAAAAAT
22291901 AAAATAAAAATAAAACAAA
1 AAAATAAAAATAAAACAAA
* * *
22291920 AAAATATAAATGAAAGAAA
1 AAAATAAAAATAAAACAAA
22291939 AAAA
1 AAAA
22291943 GACCTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAATAAAAATAAAACAAA
Found at i:22292306 original size:27 final size:28
Alignment explanation
Indices: 22292256--22292312 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
22292246 TAGTTTTGGG
*
22292256 TTTGTTGGGTATTTGGGCTTGGTT-TAA
1 TTTGTTGGGTACTTGGGCTTGGTTGTAA
*
22292283 TTTGTTGGGT-CTTGGGTTTGGGTTGTAA
1 TTTGTTGGGTACTTGGGCTT-GGTTGTAA
22292311 TT
1 TT
22292313 GGGTTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.09, C:0.04, G:0.35, T:0.53
Consensus pattern (28 bp):
TTTGTTGGGTACTTGGGCTTGGTTGTAA
Found at i:22297775 original size:142 final size:145
Alignment explanation
Indices: 22297515--22297805 Score: 462
Period size: 142 Copynumber: 2.0 Consensus size: 145
22297505 TGATTTTTTT
22297515 TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAA
1 TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATA-GTTTTTTAGTCATTTTAAAGGAAA
*** * *
22297580 AGTTTAATTTTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATTT
65 AGTTTAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTT
*
22297645 TTAATAAAAATAGTGA
130 TTAAGAAAAATAGTGA
* * *
22297661 TTTAAAAAAAATAATGTTTAGATTTTTAAAAATAAAAATA-TTTTTTAGTCATTTTAAAGGAAAA
1 TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAA
22297725 G-TTAA-AAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTT
66 GTTTAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTT
*
22297788 TAAGAAAAGTAGTGA
131 TAAGAAAAATAGTGA
22297803 TTT
1 TTT
22297806 TTTTTAAAGA
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
142 69 0.51
143 4 0.03
144 25 0.19
146 37 0.27
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.42
Consensus pattern (145 bp):
TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAA
GTTTAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTT
TAAGAAAAATAGTGA
Found at i:22297827 original size:142 final size:142
Alignment explanation
Indices: 22297521--22297841 Score: 423
Period size: 142 Copynumber: 2.2 Consensus size: 142
22297511 TTTTTTTAAA
* *
22297521 AAAAAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAAGTTTA
1 AAAAAGAAAATTTTGATTTTGAAAAATAAAAATA-GTTTTTTAGTCATTTTAAAGGAAAAGTTTA
*** * * *
22297586 ATTTTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAATA
65 ATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAAGA
22297651 AAAATAGTGATTT
130 AAAATAGTGATTT
* *
22297664 AAAAAAAATAATGTTTAGATTTTTAAAAATAAAAATA-TTTTTTAGTCATTTTAAAGGAAAAG-T
1 AAAAAGAA-AAT-TTT-GATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAAGTT
22297727 TAA-AAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAA
63 TAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAA
*
22297791 GAAAAGTAGTGATTTTTT
128 GAAAAATAGTGA---TTT
** *
22297809 TTAAAGAAAATTTTGATTTTGCAAAAAAAAAAA
1 AAAAAGAAAATTTTGATTTTG-AAAAATAAAAA
22297842 AAACTTCCGG
Statistics
Matches: 155, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
142 72 0.46
143 24 0.15
144 30 0.19
145 10 0.06
146 19 0.12
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.41
Consensus pattern (142 bp):
AAAAAGAAAATTTTGATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAAGTTTAA
TAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAAGAA
AAATAGTGATTT
Found at i:22302403 original size:15 final size:15
Alignment explanation
Indices: 22302383--22302411 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22302373 GTATTGTTGC
22302383 TTGATAACACGATGA
1 TTGATAACACGATGA
22302398 TTGATAACACGATG
1 TTGATAACACGATG
22302412 TGTAAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGATAACACGATGA
Found at i:22321529 original size:95 final size:94
Alignment explanation
Indices: 22321281--22321581 Score: 333
Period size: 94 Copynumber: 3.2 Consensus size: 94
22321271 TTACAATGTA
** * * *
22321281 AACCCATGTTTAACATCCTGGAAAACT-TCCCCGTGTTTATTGTCCCGAAAAAATTCATATGCTG
1 AACCCATGTTTAATGTCCTGGAAGACTAT-CCCGTGTTTATTGTCCCGAAAGACTTCATATGCTG
*
22321345 CCATAGTCGAGCTATGGTCTTACACAATAT
65 CCATAATCGAGCTATGGTCTTACACAATAT
* * * * * *
22321375 AACCCATGTTTAATGTCCTTGCAGGCTACCCCGTGTTTATTGTCCC-AACAGACTCCATATGTTG
1 AACCCATGTTTAATGTCCTGGAAGACTATCCCGTGTTTATTGTCCCGAA-AGACTTCATATGCTG
* * *
22321439 CCGTAATCAAGATATGGTCTTACACAATAT
65 CCATAATCGAGCTATGGTCTTACACAATAT
* * ** *
22321469 AACTCCATGTTTAATGTCCTGGAAGACTATCCCATGCTTATTGTCCCGATGGACTTCATATGCTA
1 AAC-CCATGTTTAATGTCCTGGAAGACTATCCCGTGTTTATTGTCCCGAAAGACTTCATATGCTG
*
22321534 CCATAATTGAGCTATGGTCTTACAC-A-A-
65 CCATAATCGAGCTATGGTCTTACACAATAT
* *
22321561 ACCCCATGTTTAAAGTCCTGG
1 AACCCATGTTTAATGTCCTGG
22321582 CTAACTTTGT
Statistics
Matches: 171, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
91 17 0.10
92 2 0.01
93 3 0.02
94 79 0.46
95 69 0.40
96 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (94 bp):
AACCCATGTTTAATGTCCTGGAAGACTATCCCGTGTTTATTGTCCCGAAAGACTTCATATGCTGC
CATAATCGAGCTATGGTCTTACACAATAT
Found at i:22331299 original size:31 final size:29
Alignment explanation
Indices: 22331262--22331329 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 29
22331252 TAAAATTTGC
*
22331262 TATTAAAATAA-AATTTAAATATTAAATAATT
1 TATTAAAATAATAAATT--ATATT-AATAATT
22331293 TATTAAAAATAATAAATTATATTAATAATT
1 TATT-AAAATAATAAATTATATTAATAATT
22331323 TATTAAA
1 TATTAAA
22331330 TACCTATGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 3 0.09
30 11 0.32
31 9 0.26
32 7 0.21
33 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TATTAAAATAATAAATTATATTAATAATT
Found at i:22332636 original size:110 final size:110
Alignment explanation
Indices: 22332441--22332662 Score: 304
Period size: 110 Copynumber: 2.0 Consensus size: 110
22332431 GAGGGATGAA
* * * * * *
22332441 TGAAATGGAGAACAAATGTCTCTTTATTTATACTATTAAGGAGCTCATTGATTTTGCAATTTTTA
1 TGAAATGGAGAACAAATGCCTCTCTATTTAGACTAGTAAGGAGCCCATTGAGTTTGCAATTTTTA
*
22332506 GCATGATAATCCCCCATTTTTTCTCTCATGCATGGTCAACCCCTTG
66 GCATGATAATCCACC-TTTTTTCTCTCATGCATGGTCAACCCCTTG
* * *
22332552 TGAAATGGAGAGCGAATGCCTCTCTATTT-GACTAGTGAGGAGCCCATTGAGTTTGCTAA-TTTT
1 TGAAATGGAGAACAAATGCCTCTCTATTTAGACTAGTAAGGAGCCCATTGAGTTTGC-AATTTTT
**
22332615 AGCATGATAATCCACCTTTTTTCTCTCATGCATGGTTGACCCCTTG
65 AGCATGATAATCCACCTTTTTTCTCTCATGCATGGTCAACCCCTTG
22332661 TG
1 TG
22332663 TTAAGGAAGG
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
109 30 0.31
110 41 0.42
111 27 0.28
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (110 bp):
TGAAATGGAGAACAAATGCCTCTCTATTTAGACTAGTAAGGAGCCCATTGAGTTTGCAATTTTTA
GCATGATAATCCACCTTTTTTCTCTCATGCATGGTCAACCCCTTG
Found at i:22335181 original size:22 final size:22
Alignment explanation
Indices: 22335150--22335220 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
22335140 TGCAAACACA
* *
22335150 ATAAAAGTATTGTGTGAACCAT
1 ATAAATGTATTGTGCGAACCAT
*
22335172 ATAAATGTATTGTGCGAACCCT
1 ATAAATGTATTGTGCGAACCAT
*
22335194 ATAAATGTATTGTACGAACTC-T
1 ATAAATGTATTGTGCGAAC-CAT
22335216 ATAAA
1 ATAAA
22335221 AGTGAGTGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 43 0.98
23 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (22 bp):
ATAAATGTATTGTGCGAACCAT
Found at i:22335245 original size:16 final size:16
Alignment explanation
Indices: 22335220--22335250 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22335210 AACTCTATAA
22335220 AAGTGAGTGACCTTAT
1 AAGTGAGTGACCTTAT
*
22335236 AAGTGTGTGACCTTA
1 AAGTGAGTGACCTTA
22335251 GATATGTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (16 bp):
AAGTGAGTGACCTTAT
Found at i:22335386 original size:19 final size:19
Alignment explanation
Indices: 22335362--22335398 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22335352 GTTTTATGCG
22335362 AGCTTAAATATTTCATGTA
1 AGCTTAAATATTTCATGTA
* *
22335381 AGCTTAACTATTTTATGT
1 AGCTTAAATATTTCATGT
22335399 GAGCCGAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (19 bp):
AGCTTAAATATTTCATGTA
Found at i:22335429 original size:19 final size:19
Alignment explanation
Indices: 22335405--22335444 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
22335395 ATGTGAGCCG
*
22335405 AATGTTTTATACAATCTTA
1 AATGTTTTATACAAGCTTA
*
22335424 AATGTTTTATGCAAGCTTA
1 AATGTTTTATACAAGCTTA
22335443 AA
1 AA
22335445 ACTACTATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (19 bp):
AATGTTTTATACAAGCTTA
Found at i:22338922 original size:32 final size:31
Alignment explanation
Indices: 22338884--22339066 Score: 177
Period size: 32 Copynumber: 5.7 Consensus size: 31
22338874 AATAGCAATG
22338884 ATATGATCGGCACACAACCATCAGTAATGGTA
1 ATATGATCGGCACA-AACCATCAGTAATGGTA
* * * *
22338916 ACATGATCGGCACAAAGCCATCAGTAGTAGTG
1 ATATGATCGGCACAAA-CCATCAGTAATGGTA
* * *
22338948 ATATGATCGGTACACAGCCATCAGTAACGGTA
1 ATATGATCGGCACA-AACCATCAGTAATGGTA
* * * * *
22338980 ATATGATCGGCACAAGCCATTAGTAGTAGTG
1 ATATGATCGGCACAAACCATCAGTAATGGTA
* * *
22339011 ATATGATCAGCACACAGCCATCAGTAACGGTA
1 ATATGATCGGCACA-AACCATCAGTAATGGTA
*
22339043 ATATGACCGGCACAAAGCCATCAG
1 ATATGATCGGCACAAA-CCATCAG
22339067 CAGCATTGCA
Statistics
Matches: 121, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
31 28 0.23
32 92 0.76
33 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (31 bp):
ATATGATCGGCACAAACCATCAGTAATGGTA
Found at i:22339016 original size:127 final size:125
Alignment explanation
Indices: 22338833--22339066 Score: 342
Period size: 127 Copynumber: 1.9 Consensus size: 125
22338823 ACAGAATGGC
* *
22338833 TACAAGCCATAAGTACAGTAATATGATTGGCACAAGCCATCAATAGCAATGATATGATCGGCACA
1 TACAAGCCATAAGTACAGTAATATGATCGGCACAAGCCATCAATAGCAATGATATGATCAGCACA
* *
22338898 CAACCATCAGTAATGGTAACATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGG
66 CAACCATCAGTAACGGTAACATGACCGGCACAAAGCCATCAGTAGTAGTGATATGATCGG
* * * * * *
22338958 TACACAGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGTAGTGATATGATCAGCA
1 TACA-AGCCATAAGT-ACAGTAATATGATCGGCACAAGCCATCAATAGCAATGATATGATCAGCA
* *
22339023 CACAGCCATCAGTAACGGTAATATGACCGGCACAAAGCCATCAG
64 CACAACCATCAGTAACGGTAACATGACCGGCACAAAGCCATCAG
22339067 CAGCATTGCA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
125 4 0.04
126 9 0.09
127 82 0.86
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (125 bp):
TACAAGCCATAAGTACAGTAATATGATCGGCACAAGCCATCAATAGCAATGATATGATCAGCACA
CAACCATCAGTAACGGTAACATGACCGGCACAAAGCCATCAGTAGTAGTGATATGATCGG
Found at i:22339027 original size:63 final size:64
Alignment explanation
Indices: 22338837--22339066 Score: 322
Period size: 63 Copynumber: 3.6 Consensus size: 64
22338827 AATGGCTACA
* * * * * *
22338837 AGCCATAAGT-ACAGTAATATGATTGGCAC-AAGCCATCAATAGCAATGATATGATCGGCACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGGCACAC
* * * *
22338899 AACCATCAGTAATGGTAACATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGGTACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGGCACAC
* *
22338963 AGCCATCAGTAACGGTAATATGATCGGCAC-AAGCCATTAGTAGTAGTGATATGATCAGCACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGGCACAC
*
22339026 AGCCATCAGTAACGGTAATATGACCGGCACAAAGCCATCAG
1 AGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAG
22339067 CAGCATTGCA
Statistics
Matches: 147, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
62 8 0.05
63 74 0.50
64 65 0.44
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (64 bp):
AGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGGCACAC
Found at i:22339280 original size:24 final size:24
Alignment explanation
Indices: 22339253--22339355 Score: 134
Period size: 24 Copynumber: 4.3 Consensus size: 24
22339243 TTAGTCATAC
*
22339253 AAATCACAAACAAATCAATCATTT
1 AAATCACAAACAAATCAGTCATTT
*
22339277 AAATCACAAACAAATTAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
22339301 AAATCACAAACAAATCAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
* * * * * *
22339325 GAATTATATACAATTTAGTCATTT
1 AAATCACAAACAAATCAGTCATTT
22339349 AAATCAC
1 AAATCAC
22339356 GGAAAGATCA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.49, C:0.17, G:0.04, T:0.30
Consensus pattern (24 bp):
AAATCACAAACAAATCAGTCATTT
Found at i:22339314 original size:48 final size:48
Alignment explanation
Indices: 22339243--22339379 Score: 159
Period size: 48 Copynumber: 2.8 Consensus size: 48
22339233 ATGCTCAGAC
**
22339243 TTAGTCATACAAATCACAAACAAATCAATCATTTAAATCACAAACAAA
1 TTAGTCATTTAAATCACAAACAAATCAATCATTTAAATCACAAACAAA
* * * * * *
22339291 TTAGTCATTTAAATCACAAACAAATCAGTCATTTGAATTATATACAAT
1 TTAGTCATTTAAATCACAAACAAATCAATCATTTAAATCACAAACAAA
* *
22339339 TTAGTCATTTAAATCACGGAA-AGATCAATCATTTAACATCA
1 TTAGTCATTTAAATCAC-AAACAAATCAATCATTTAA-ATCA
22339380 AGGGAAAAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
48 69 0.93
49 5 0.07
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.30
Consensus pattern (48 bp):
TTAGTCATTTAAATCACAAACAAATCAATCATTTAAATCACAAACAAA
Found at i:22339457 original size:27 final size:27
Alignment explanation
Indices: 22339421--22339584 Score: 190
Period size: 27 Copynumber: 6.1 Consensus size: 27
22339411 CATTACGGTC
* * *
22339421 ATTTTA-CCTTAC-AGGGTATTTTGGTG
1 ATTTTACCCTT-CGAGGGTATTTCGATA
*
22339447 ATTTTACCCTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
22339474 ATTTTACCCTTCGAGGGAATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
22339501 ATTTTATCCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
22339528 ATTTTACCCTTCAAAGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
22339555 ATTTTACCCTTTGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
22339582 ATT
1 ATT
22339585 AGCCCACGAA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.07
27 109 0.92
28 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:22339532 original size:81 final size:80
Alignment explanation
Indices: 22339421--22339584 Score: 215
Period size: 81 Copynumber: 2.0 Consensus size: 80
22339411 CATTACGGTC
* * ***
22339421 ATTTTACCTTACAGGGTATTTTGGTGATTTTACCCTTCGGGGGTATTTC-GATAATTTTACCCTT
1 ATTTTACCTTACAGGGTATTTTGATAATTTTACCCTTCAAAGGTATTTCAG-TAATTTTACCCTT
*
22339485 CGAGGGAATTTCGATA
65 CGAGGGAATTTCAATA
22339501 ATTTTATCCTT-CGAGGGTATTTTGATAATTTTACCCTTCAAAGGTATTTCAGTAATTTTACCCT
1 ATTTTA-CCTTAC-AGGGTATTTTGATAATTTTACCCTTCAAAGGTATTTCAGTAATTTTACCCT
* *
22339565 TTGAGGGTATTTCAATA
64 TCGAGGGAATTTCAATA
22339582 ATT
1 ATT
22339585 AGCCCACGAA
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
80 7 0.10
81 65 0.89
82 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (80 bp):
ATTTTACCTTACAGGGTATTTTGATAATTTTACCCTTCAAAGGTATTTCAGTAATTTTACCCTTC
GAGGGAATTTCAATA
Found at i:22351729 original size:22 final size:22
Alignment explanation
Indices: 22351704--22351751 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
22351694 TTACATTTTT
22351704 TATATCTTATA-ATTTATATACA
1 TATATC-TATACATTTATATACA
22351726 TATATCTATACATTTATATACA
1 TATATCTATACATTTATATACA
22351748 TATA
1 TATA
22351752 CGTTATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (22 bp):
TATATCTATACATTTATATACA
Found at i:22356725 original size:7 final size:7
Alignment explanation
Indices: 22356710--22356743 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
22356700 TCAAGTAATT
*
22356710 CATTGAA
1 CATTTAA
22356717 CATTTAA
1 CATTTAA
22356724 CATTTAA
1 CATTTAA
22356731 CATTTAA
1 CATTTAA
22356738 CATTTA
1 CATTTA
22356744 CTAATATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (7 bp):
CATTTAA
Found at i:22356924 original size:20 final size:20
Alignment explanation
Indices: 22356878--22356925 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
22356868 ATAGATCCAT
*
22356878 AACAGGGGCATCGAAGTGCA
1 AACAGGGGCATCAAAGTGCA
* *
22356898 TATAGGGGCA-CAAATGTGCA
1 AACAGGGGCATCAAA-GTGCA
22356918 AACAGGGG
1 AACAGGGG
22356926 AACCGTAGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.35, C:0.17, G:0.35, T:0.12
Consensus pattern (20 bp):
AACAGGGGCATCAAAGTGCA
Found at i:22362292 original size:48 final size:48
Alignment explanation
Indices: 22362239--22362332 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
22362229 TCATAGTGAT
* *
22362239 AACCATTTTCATCCATTTTGATCCTTGTGGAGACGATCTCACTTACTC
1 AACCATTTTAATCCATTCTGATCCTTGTGGAGACGATCTCACTTACTC
* *
22362287 AACCATTTTAATCCATTCTGATCCTTGTGGAGATGATCTCTCTTAC
1 AACCATTTTAATCCATTCTGATCCTTGTGGAGACGATCTCACTTAC
22362333 AACTTTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (48 bp):
AACCATTTTAATCCATTCTGATCCTTGTGGAGACGATCTCACTTACTC
Found at i:22384543 original size:40 final size:40
Alignment explanation
Indices: 22384407--22384553 Score: 168
Period size: 40 Copynumber: 3.7 Consensus size: 40
22384397 AATACAATTG
* * **
22384407 TTACACCAACCCGAAGCCTATTAGGCATTAAGCCCGATAA
1 TTACACCAGCACGAAGCCTGCTAGGCATTAAGCCCGATAA
** *
22384447 TTACACCAGCATAAAGCCTGCTAGGCATTAAGCCTGATAA
1 TTACACCAGCACGAAGCCTGCTAGGCATTAAGCCCGATAA
** * * *
22384487 TTACACCAGCGTGAAGCGTGTTAGGCATTAAGCCCAATAA
1 TTACACCAGCACGAAGCCTGCTAGGCATTAAGCCCGATAA
**
22384527 TTACACTGGCACGAAGCCTGCTAGGCA
1 TTACACCAGCACGAAGCCTGCTAGGCA
22384554 CAAGGTCCGA
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.21
Consensus pattern (40 bp):
TTACACCAGCACGAAGCCTGCTAGGCATTAAGCCCGATAA
Found at i:22388902 original size:50 final size:50
Alignment explanation
Indices: 22388778--22389024 Score: 219
Period size: 50 Copynumber: 4.8 Consensus size: 50
22388768 GATAATAACA
* * * ** * *
22388778 TGCCAAGGCCATGTCTCAGACATGGTATTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
22388827 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
22388877 TGCCTATGCGATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
22388927 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
22388983 TGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22389025 TTATCCAAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 79 0.50
53 2 0.01
56 39 0.25
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:22394177 original size:50 final size:50
Alignment explanation
Indices: 22394028--22394275 Score: 221
Period size: 50 Copynumber: 4.9 Consensus size: 50
22394018 GAAAATAACA
* ** * *
22394028 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * * ** *
22394077 TGCCAATTCCATATCTCAAATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* **
22394127 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
22394177 TGCCAACGCCATGTCCCAAACATGGCCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
* *
22394233 TGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
22394276 TATCCAAATG
Statistics
Matches: 158, Mismatches: 33, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 76 0.48
53 5 0.03
56 39 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:22394222 original size:100 final size:102
Alignment explanation
Indices: 22394027--22394275 Score: 245
Period size: 99 Copynumber: 2.4 Consensus size: 102
22394017 TGAAAATAAC
* * ** * * **
22394027 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTACTGCCAATTCCATATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACTGCCAACGCCATATC
* * * **
22394092 TCAAATATGGTCTTACATGGGAGTTCTCAT-A-TC-G
66 CCAAACATGGCCTTACATGGGACCTCTCATAACTCAG
* * * *
22394126 GTGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCT-CGGTGCCAACGCCATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTAC--TGCCAACGCCATA
22394190 TCCCAAACATGGCCTTACATGGGACCTCTCATAATCTCAATG
64 TCCCAAACATGGCCTTACATGGGACCTCTCATAA-CTC-A-G
* * *
22394232 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCTC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC
22394276 TATCCAAATG
Statistics
Matches: 119, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
98 1 0.01
99 39 0.33
100 37 0.31
101 1 0.01
103 2 0.02
106 39 0.33
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (102 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACTGCCAACGCCATATC
CCAAACATGGCCTTACATGGGACCTCTCATAACTCAG
Found at i:22397319 original size:27 final size:25
Alignment explanation
Indices: 22397280--22397334 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 25
22397270 AATGGATAAA
22397280 AAATAAAAGAATAATG-ACAACAACAAT
1 AAATAAAAGAAT-ATGTAC-A-AACAAT
22397307 AAATAAATA-AATATGTACAAACAAT
1 AAATAAA-AGAATATGTACAAACAAT
22397332 AAA
1 AAA
22397335 GTATATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
25 9 0.35
26 4 0.15
27 12 0.46
28 1 0.04
ACGTcount: A:0.67, C:0.09, G:0.05, T:0.18
Consensus pattern (25 bp):
AAATAAAAGAATATGTACAAACAAT
Found at i:22397391 original size:19 final size:19
Alignment explanation
Indices: 22397365--22397408 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22397355 GAGTATATAT
22397365 AAAAATAAAGAAATAATAA
1 AAAAATAAAGAAATAATAA
* * *
22397384 ACAAATAAATAGATAATAA
1 AAAAATAAAGAAATAATAA
22397403 AAAAAT
1 AAAAAT
22397409 TTGTAAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAAATAAAGAAATAATAA
Found at i:22399228 original size:143 final size:143
Alignment explanation
Indices: 22398965--22400122 Score: 1456
Period size: 143 Copynumber: 8.1 Consensus size: 143
22398955 TAATGCCAAA
* * * * ** * **
22398965 GAAATAAGACTCACTGTTTTTAGTCTGCTCCGCTGCAACTTCAAAGAGATACGATTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
** * * * * *
22399030 AATCTATTCCGCTGTAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGGTTTAATTTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
22399095 CTGCAACGCCAGG
131 CTGCAACGCCAGG
* * *
22399108 GAAATAGGATTCGTTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * * *
22399173 AATCTGATCCACTGCAACTTTAAGAAGATAAGATCTTCCATAATTTTTAGTTTTAATATGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* ** * *
22399238 TTGTGATGCCAAG
131 CTGCAACGCCAGG
* * * * * *
22399251 GAAATAAGATTCGCTATCTTCAGTCTGCTCCGATGTAACTTCAGGGAGGTAAAGCTAGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* *
22399316 AATCTGCTCCACTGTAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTATTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
*
22399381 CTGCAATGCCAGG
131 CTGCAACGCCAGG
* * * *
22399394 GAAATAAGATTCGTTGTCTTCAGTCTGCTTCGCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTT
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * *
22399459 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAACTTGTAGCTTTAACCTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
*
22399524 CTGCAACGCCAGA
131 CTGCAACGCCAGG
* * * *
22399537 GAAATAAGATTTGCTGTCTTCAGTCTACTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * * * *
22399602 AATTTGCTCCACTGAAACTTTAGGAAGGTAAGATCCGCCATAGTTTGTAGCTTTAATCTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* *
22399667 CTGTAATGCCAGG
131 CTGCAACGCCAGG
* * * * * * * *
22399680 GAAAAAAGATTCGCTATCTTCAGTTTGCTTCGCTACAACTTTAAGGAGATAAGGTTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * **
22399745 AATCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* *
22399810 CTACAACACCAGG
131 CTGCAACGCCAGG
*
22399823 GAAATAAGATTCGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGA-ATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * *
22399887 AATATGCTCCACTGCGACTTCAAAAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGCTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* * *
22399952 CTACAATGTCAGG
131 CTGCAACGCCAGG
* * * * * *
22399965 TAAATAAGATTCGCTGTCTTCTGTCTGTTCTGCTGTAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* *
22400030 AATCTGCTCCACTGCAACTT-TAGCAAGATAAGATCTGCCATAATTTGTAGCTTGAATCTGTTCC
66 AATCTGCTCCACTGCAACTTCAAG-AAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCC
* *
22400094 ACTACAACACCAGG
130 ACTGCAACGCCAGG
22400108 GAAATAAGATTCGCT
1 GAAATAAGATTCGCT
22400123 ATAATGACCT
Statistics
Matches: 873, Mismatches: 140, Indels: 4
0.86 0.14 0.00
Matches are distributed among these distances:
142 125 0.14
143 748 0.86
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (143 bp):
GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
CTGCAACGCCAGG
Found at i:22400620 original size:109 final size:109
Alignment explanation
Indices: 22400429--22400645 Score: 425
Period size: 109 Copynumber: 2.0 Consensus size: 109
22400419 TATCTTAGAT
*
22400429 AGAAAACCCGAAGAAATAGTCATAATTTAGACTATTCTTTCTCAAATGTTTCCATCCCTTTGGTT
1 AGAAAACCCGAAGAAATAGTCATAATTTAGACTATTCTTTCTCAAATGTTTCCAACCCTTTGGTT
22400494 AGTTCTAAATAATAGTCTTGTTTCAAGTCCTCATACTATTTAGC
66 AGTTCTAAATAATAGTCTTGTTTCAAGTCCTCATACTATTTAGC
22400538 AGAAAACCCGAAGAAATAGTCATAATTTAGACTATTCTTTCTCAAATGTTTCCAACCCTTTGGTT
1 AGAAAACCCGAAGAAATAGTCATAATTTAGACTATTCTTTCTCAAATGTTTCCAACCCTTTGGTT
22400603 AGTTCTAAATAATAGTCTTGTTTCAAGTCCTCATACTATTTAG
66 AGTTCTAAATAATAGTCTTGTTTCAAGTCCTCATACTATTTAG
22400646 AAGCTTTTGG
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 107 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (109 bp):
AGAAAACCCGAAGAAATAGTCATAATTTAGACTATTCTTTCTCAAATGTTTCCAACCCTTTGGTT
AGTTCTAAATAATAGTCTTGTTTCAAGTCCTCATACTATTTAGC
Found at i:22412907 original size:20 final size:20
Alignment explanation
Indices: 22412882--22412929 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
22412872 ATGTTTTAAT
*
22412882 TTAAGACATACTTAATAAAA
1 TTAAGACACACTTAATAAAA
* **
22412902 TTAAGACACATTTAATTTAA
1 TTAAGACACACTTAATAAAA
22412922 TTAAGACA
1 TTAAGACA
22412930 AGACAAGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (20 bp):
TTAAGACACACTTAATAAAA
Found at i:22417268 original size:14 final size:14
Alignment explanation
Indices: 22417249--22417275 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22417239 ACATGAATAT
22417249 AAAAACCTCACAAC
1 AAAAACCTCACAAC
22417263 AAAAACCTCACAA
1 AAAAACCTCACAA
22417276 ATCTCTCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.33, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAAACCTCACAAC
Found at i:22417623 original size:19 final size:19
Alignment explanation
Indices: 22417599--22417648 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
22417589 AACAAAACAC
22417599 TTTTTTTTAATTCACAAT-T
1 TTTTTTTTAATTCAC-ATCT
* *
22417618 TTTTTTTCAATTCACTTCT
1 TTTTTTTTAATTCACATCT
22417637 TTTTTTTTAATT
1 TTTTTTTTAATT
22417649 TCGTAAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTTTTAATTCACATCT
Found at i:22419161 original size:20 final size:20
Alignment explanation
Indices: 22419136--22419176 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22419126 ATTTAAACCG
22419136 AGCTCAAACGAGCTGAAATA
1 AGCTCAAACGAGCTGAAATA
***
22419156 AGCTCATGTGAGCTGAAATA
1 AGCTCAAACGAGCTGAAATA
22419176 A
1 A
22419177 AATTAGGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (20 bp):
AGCTCAAACGAGCTGAAATA
Found at i:22421488 original size:15 final size:15
Alignment explanation
Indices: 22421470--22421500 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22421460 TATAAATGTC
22421470 ACAATAACAAATACA
1 ACAATAACAAATACA
*
22421485 ACAATAATAAATACA
1 ACAATAACAAATACA
22421500 A
1 A
22421501 TAATGGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (15 bp):
ACAATAACAAATACA
Found at i:22421530 original size:13 final size:14
Alignment explanation
Indices: 22421511--22421548 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
22421501 TAATGGCATA
22421511 GAAATAATATAAAC
1 GAAATAATATAAAC
22421525 -AAATAA-ATAAAC
1 GAAATAATATAAAC
22421537 GAAACTAATATA
1 GAAA-TAATATA
22421549 CATGAGGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:22422749 original size:4 final size:4
Alignment explanation
Indices: 22422740--22422779 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
22422730 TTTTAAGTAA
* * *
22422740 AAAT AAAT AAAT AAAC AAAT AAAC AAAT AAAT AAAG AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
22422780 GGCGAAAACC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:22425209 original size:28 final size:28
Alignment explanation
Indices: 22425178--22425234 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
22425168 TTAATTTTAT
*
22425178 ATGTTTATATGTTATTTTTTATTATTAA
1 ATGTTTATATGTTATTATTTATTATTAA
22425206 ATGTTTATATGTTATTATTTATTATTAA
1 ATGTTTATATGTTATTATTTATTATTAA
22425234 A
1 A
22425235 ATAAAGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (28 bp):
ATGTTTATATGTTATTATTTATTATTAA
Found at i:22427689 original size:19 final size:19
Alignment explanation
Indices: 22427667--22427763 Score: 97
Period size: 19 Copynumber: 5.2 Consensus size: 19
22427657 CCCTACTTTC
22427667 AAATGTTTTATGCGAGCTT
1 AAATGTTTTATGCGAGCTT
* *
22427686 AAATGTTTCATGTGAGCTT
1 AAATGTTTTATGCGAGCTT
* * ** *
22427705 AACTATTTTATATGAGC-C
1 AAATGTTTTATGCGAGCTT
* *
22427723 AAATGTTTTATACAAGCTT
1 AAATGTTTTATGCGAGCTT
*
22427742 AAATGTTTTATGCGAGCCT
1 AAATGTTTTATGCGAGCTT
22427761 AAA
1 AAA
22427764 AATACTATAC
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
18 13 0.21
19 49 0.79
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.39
Consensus pattern (19 bp):
AAATGTTTTATGCGAGCTT
Found at i:22427759 original size:37 final size:37
Alignment explanation
Indices: 22427667--22427759 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 37
22427657 CCCTACTTTC
* ***
22427667 AAATGTTTTATGCGAGCTTAAATGTTTCATGTGAGCTT
1 AAATGTTTTATGCGAGC-CAAATGTTTCATACAAGCTT
* * ** *
22427705 AACTATTTTATATGAGCCAAATGTTTTATACAAGCTT
1 AAATGTTTTATGCGAGCCAAATGTTTCATACAAGCTT
22427742 AAATGTTTTATGCGAGCC
1 AAATGTTTTATGCGAGCC
22427760 TAAAAATACT
Statistics
Matches: 42, Mismatches: 13, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
37 29 0.69
38 13 0.31
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (37 bp):
AAATGTTTTATGCGAGCCAAATGTTTCATACAAGCTT
Found at i:22427778 original size:56 final size:56
Alignment explanation
Indices: 22427666--22427778 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 56
22427656 ACCCTACTTT
* * * * ** ** *
22427666 CAAATGTTTTATGCGAGCTTAAATGTTTCATGTGAGCTTAACTATTTTATATGAGC
1 CAAATGTTTTATACAAGCTTAAATGTTTCATGCGAGCCTAAAAATACTATACGAGC
*
22427722 CAAATGTTTTATACAAGCTTAAATGTTTTATGCGAGCCTAAAAATACTATACGAGC
1 CAAATGTTTTATACAAGCTTAAATGTTTCATGCGAGCCTAAAAATACTATACGAGC
22427778 C
1 C
22427779 TATATCCATG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (56 bp):
CAAATGTTTTATACAAGCTTAAATGTTTCATGCGAGCCTAAAAATACTATACGAGC
Found at i:22428145 original size:32 final size:32
Alignment explanation
Indices: 22428104--22428167 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
22428094 GTAGATAGCG
22428104 TGGTATGTTTGAAGAGTGTGAACATTCACGCT
1 TGGTATGTTTGAAGAGTGTGAACATTCACGCT
22428136 TGGTATGTTTGAAGAGTGTGAACATTCACGCT
1 TGGTATGTTTGAAGAGTGTGAACATTCACGCT
22428168 ACACTTACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.34
Consensus pattern (32 bp):
TGGTATGTTTGAAGAGTGTGAACATTCACGCT
Found at i:22438194 original size:20 final size:21
Alignment explanation
Indices: 22438161--22438224 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 21
22438151 CAAGTCCTTT
* *
22438161 AGCTCGTTTCAGCTCCAA-TC
1 AGCTCATTTGAGCTCCAATTC
*
22438181 AGCTCATTTGAGCT-TAATTC
1 AGCTCATTTGAGCTCCAATTC
* *
22438201 AGCTCATTCGAGCT-CAATTT
1 AGCTCATTTGAGCTCCAATTC
22438221 AGCT
1 AGCT
22438225 TTCTATCAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
19 2 0.05
20 35 0.95
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (21 bp):
AGCTCATTTGAGCTCCAATTC
Found at i:22438215 original size:30 final size:30
Alignment explanation
Indices: 22438168--22438225 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
22438158 TTTAGCTCGT
22438168 TTCAGCTCCAATCAGCTC-ATTTGAGCTTAA
1 TTCAGCTCCAATCAGCTCAATTT-AGCTTAA
*
22438198 TTCAGCT-CATTCGAGCTCAATTTAGCTT
1 TTCAGCTCCAATC-AGCTCAATTTAGCTT
22438226 TCTATCAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 4 0.16
30 17 0.68
31 4 0.16
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (30 bp):
TTCAGCTCCAATCAGCTCAATTTAGCTTAA
Found at i:22439616 original size:17 final size:17
Alignment explanation
Indices: 22439596--22439649 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
22439586 GGAAATTACG
22439596 AAAAAAATTGAGAATAA
1 AAAAAAATTGAGAATAA
*
22439613 AAAAAAAGT-ACGAAGTAA
1 AAAAAAATTGA-GAA-TAA
*
22439631 AAAAAATTTGA-AA-AA
1 AAAAAAATTGAGAATAA
22439646 AAAA
1 AAAA
22439650 GTGAAGTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 6 0.19
16 1 0.03
17 13 0.42
18 10 0.32
19 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.15
Consensus pattern (17 bp):
AAAAAAATTGAGAATAA
Found at i:22440788 original size:20 final size:19
Alignment explanation
Indices: 22440763--22440849 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
22440753 GCTGATAGAA
22440763 AGCTAAATTGAGCTCGAATG
1 AGCTAAATTGAGCT-GAATG
*
22440783 AGCTAAATTGAGCTTAAATG
1 AGCTAAATTGAGC-TGAATG
* *
22440803 AGCT-GATTGGAGCTGAAACG
1 AGCTAAATT-GAGCTG-AATG
*
22440823 AGCTAAA-GGAGCTGGAATTG
1 AGCTAAATTGAGCT-GAA-TG
22440843 AGCTAAA
1 AGCTAAA
22440850 ATCAGCTTGC
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
19 11 0.20
20 41 0.76
21 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.23
Consensus pattern (19 bp):
AGCTAAATTGAGCTGAATG
Found at i:22440805 original size:30 final size:27
Alignment explanation
Indices: 22440763--22440849 Score: 75
Period size: 30 Copynumber: 2.9 Consensus size: 27
22440753 GCTGATAGAA
*
22440763 AGCTAAATTGAGCTCGAATGAGCTAAATTG
1 AGCTAAA-TGAGCT-GAATGAGCTAAA-CG
*
22440793 AGCTTAAATGAGCTGATTGGAGCTGAAACG
1 AGC-TAAATGAGCTGAAT-GAGCT-AAACG
*
22440823 AGCTAAAGGAGCTGGAATTGAGCTAAA
1 AGCTAAATGAGCT-GAA-TGAGCTAAA
22440850 ATCAGCTTGC
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
29 15 0.31
30 25 0.52
31 8 0.17
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.23
Consensus pattern (27 bp):
AGCTAAATGAGCTGAATGAGCTAAACG
Found at i:22442012 original size:24 final size:24
Alignment explanation
Indices: 22441984--22442035 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
22441974 TTAGTAAGTC
* *
22441984 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
22442008 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
22442032 AAAT
1 AAAT
22442036 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:22455634 original size:10 final size:10
Alignment explanation
Indices: 22455621--22455645 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22455611 AAATATGTAA
22455621 ATATATATGT
1 ATATATATGT
22455631 ATATATATGT
1 ATATATATGT
22455641 ATATA
1 ATATA
22455646 AAAATATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (10 bp):
ATATATATGT
Found at i:22455846 original size:3 final size:3
Alignment explanation
Indices: 22455838--22455876 Score: 53
Period size: 3 Copynumber: 12.7 Consensus size: 3
22455828 TAACTGAGTA
22455838 AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT GAAT AGAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AA
22455877 GTATAAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 2 0.06
3 25 0.76
4 6 0.18
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22460062 original size:40 final size:40
Alignment explanation
Indices: 22460018--22460168 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 40
22460008 TGGCACACCA
* * * *
22460018 GTGGATAAGCCACCAGTATTACATATAAACTGCCAGTAAT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
* * * * * *
22460058 GTGGACAAGCCACCAGAATTGTAGACAAGTTACCAATAAT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
** * *
22460098 GTTCAAAAGCCACCAGTGTTGCAGACAAGCTGCCAGTAAT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
* * * *
22460138 GTGGATAAACCACCAGTGTTGTACACAAGCT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCT
22460169 ACCATTATTA
Statistics
Matches: 86, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (40 bp):
GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
Found at i:22460073 original size:20 final size:20
Alignment explanation
Indices: 22460050--22460154 Score: 59
Period size: 20 Copynumber: 5.2 Consensus size: 20
22460040 ATATAAACTG
*
22460050 CCAGTAATGTGGACAAGCCA
1 CCAGTAATGTAGACAAGCCA
**
22460070 CCAG-AATTGTAGACAAGTTA
1 CCAGTAA-TGTAGACAAGCCA
* ** *
22460090 CCAATAATGTTCAAAAGCCA
1 CCAGTAATGTAGACAAGCCA
** * **
22460110 CCAGTGTTGCAGACAAGCTG
1 CCAGTAATGTAGACAAGCCA
* * *
22460130 CCAGTAATGTGGATAAACCA
1 CCAGTAATGTAGACAAGCCA
22460150 CCAGT
1 CCAGT
22460155 GTTGTACACA
Statistics
Matches: 57, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
19 2 0.04
20 53 0.93
21 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (20 bp):
CCAGTAATGTAGACAAGCCA
Found at i:22460160 original size:80 final size:80
Alignment explanation
Indices: 22460024--22460172 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
22460014 ACCAGTGGAT
* * * * *
22460024 AAGCCACCAGTATTACATATAAACTGCCAGTAATGTGGACAAGCCACCAGAATTGTAGACAAGTT
1 AAGCCACCAGTATTACAGACAAACTGCCAGTAATGTGGACAAACCACCAGAATTGTACACAAGCT
22460089 ACCAATAATGTTCAA
66 ACCAATAATGTTCAA
* * * * **
22460104 AAGCCACCAGTGTTGCAGACAAGCTGCCAGTAATGTGGATAAACCACCAGTGTTGTACACAAGCT
1 AAGCCACCAGTATTACAGACAAACTGCCAGTAATGTGGACAAACCACCAGAATTGTACACAAGCT
22460169 ACCA
66 ACCA
22460173 TTATTATAGA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (80 bp):
AAGCCACCAGTATTACAGACAAACTGCCAGTAATGTGGACAAACCACCAGAATTGTACACAAGCT
ACCAATAATGTTCAA
Found at i:22460185 original size:40 final size:40
Alignment explanation
Indices: 22460107--22460186 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
22460097 TGTTCAAAAG
* * * *
22460107 CCACCAGTGTTGCAGACAAGCTGCCAGTAATGTGGATAAA
1 CCACCAGTGTTGCACACAAGCTACCAGTAATATAGATAAA
* * *
22460147 CCACCAGTGTTGTACACAAGCTACCATTATTATAGATAAA
1 CCACCAGTGTTGCACACAAGCTACCAGTAATATAGATAAA
22460187 TTGCCAGTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (40 bp):
CCACCAGTGTTGCACACAAGCTACCAGTAATATAGATAAA
Found at i:22468712 original size:19 final size:20
Alignment explanation
Indices: 22468684--22468723 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
22468674 TTCTAAATTA
*
22468684 TTATCCACATGA-TTTAAAT
1 TTATCAACATGATTTTAAAT
*
22468703 TTATCAACATTATTTTAAAT
1 TTATCAACATGATTTTAAAT
22468723 T
1 T
22468724 CTTTTTACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (20 bp):
TTATCAACATGATTTTAAAT
Found at i:22472063 original size:19 final size:18
Alignment explanation
Indices: 22472039--22472086 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
22472029 GGATGCTCTT
*
22472039 TTTGCATTCATTTCATGCA
1 TTTGCATTCATGTCAT-CA
22472058 TTTGCATTACATGTCATCA
1 TTTGCATT-CATGTCATCA
22472077 TATT-CATTCA
1 T-TTGCATTCA
22472087 AGATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 2 0.08
19 15 0.58
20 9 0.35
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTGCATTCATGTCATCA
Found at i:22480553 original size:44 final size:43
Alignment explanation
Indices: 22480483--22481205 Score: 197
Period size: 44 Copynumber: 16.6 Consensus size: 43
22480473 TAGAACAGAT
* *
22480483 CTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTA-GTA
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGGTA
* **
22480525 CTGGTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAATGG-A
1 CT--TATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT-A-GGTA
* * * * *
22480570 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCACATC-AGGTA
1 -CTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGCTAGGTA
*
22480613 -TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTA-GTAA
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGGT-A
* * * **
22480655 TCCTATCTCCTTGAGATTACAGTGGAGCGGATT-AAAATAAAGG-A
1 -CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGGTA
* * * * * * * *
22480699 TCTTATCTCTCT-AAAGTTACAGTAGAGTACATCGCATC-AGGT-
1 -CTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGGTA
* * ** ** * *
22480741 CTTATCTCTCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGAT-
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG---CT-AGGTA
* *
22480787 CTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTA-GTAA
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGGT-A
* * **
22480830 TCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAGG-A
1 -CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGGTA
* ** * * * * *
22480874 TCTTTTCTCTATGA-AGTTACAGTAGAGTAGATCGCATC-AGGT-
1 -CTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGGTA
* ** ** * ***
22480916 CCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCATA
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG--CTAGGTA
* *
22480961 TCTTATCTCCCTAAGATTACA-TCAGAGCAGATTGAAGCT-GGTAA
1 -CTTATCTCCCTGAGATTACAGT-GGAGCAGATTGAAGCTAGGT-A
* * ** ** * *
22481005 TCCTATCTCCATGAGATTACAGTGGAATAGACCGAAGAATTTCAGAT-
1 -CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG---CT-AGGTA
*
22481052 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT-GGTAA
1 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGGT-A
* * * * *
22481095 TCTTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATCAAGG-A
1 -CTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCTAGGTA
* * * * * *
22481139 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AGGT-
1 -CTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGGTA
* *
22481181 CTTGTCTCCTTGAGATTACAGTGGA
1 CTTATCTCCCTGAGATTACAGTGGA
22481206 ATAAACCGAA
Statistics
Matches: 493, Mismatches: 129, Indels: 119
0.67 0.17 0.16
Matches are distributed among these distances:
41 100 0.20
42 23 0.05
43 23 0.05
44 237 0.48
45 11 0.02
46 96 0.19
47 1 0.00
49 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (43 bp):
CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGGTA
Found at i:22480716 original size:129 final size:129
Alignment explanation
Indices: 22480484--22480761 Score: 448
Period size: 129 Copynumber: 2.2 Consensus size: 129
22480474 AGAACAGATC
* * **
22480484 TTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTACTGGTATCTCCCTGAGATTACAGT
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
* * *
22480549 GGAGCGGATTAAAATAATGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGGTA
66 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTACATCACATCAGGTA
*
22480613 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACAGT
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
* *
22480678 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTACATCGCATCAGGTC
66 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTACATCACATCAGGTA
* *
22480742 TTATCTCTCTAAGATTACAG
1 TTATCTCCCTGAGATTACAG
22480762 TGGAATAGAC
Statistics
Matches: 137, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 137 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (129 bp):
TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
GGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTACATCACATCAGGTA
Found at i:22480810 original size:175 final size:175
Alignment explanation
Indices: 22480613--22481030 Score: 710
Period size: 175 Copynumber: 2.4 Consensus size: 175
22480603 ACATCAGGTA
* *
22480613 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGATTACAGT
* *
22480678 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTACATCGCATCAGGTCT
66 GGAGCGGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTACATCGCATCAGGTCC
*
22480743 TATCTCTCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATC
131 TATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATC
*
22480788 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGATTACAGT
* * *
22480853 GGAGCGGATTAAAATAAAGGATCTTTTCTCTATGAAGTTACAGTAGAGTAGATCGCATCAGGTCC
66 GGAGCGGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTACATCGCATCAGGTCC
* *
22480918 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCATATC
131 TATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATC
* * *
22480963 TTATCTCCCTAAGATTACATCAGAGCAGATTGAAGCTGGTAATCCTATCTCCATGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGATTACAGT
22481028 GGA
66 GGA
22481031 ATAGACCGAA
Statistics
Matches: 229, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 229 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (175 bp):
TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGATTACAGT
GGAGCGGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTACATCGCATCAGGTCC
TATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATC
Found at i:22480853 original size:90 final size:90
Alignment explanation
Indices: 22480613--22481118 Score: 464
Period size: 90 Copynumber: 5.7 Consensus size: 90
22480603 ACATCAGGTA
* * *
22480613 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
*** ** **
22480678 GGAGCGGA-TTAA-AA-TAAAGGATC
66 GGAATAGACCGAAGAATTTCA-GATC
* * * * * * * * * * *
22480701 TTATCTCTCTAA-AGTTACAGTAGAGTACATCGCATC-AG--GTCTTATCTCTCTAAGATTACAG
1 TTATCTCCCTAAGA-TTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
22480762 TGGAATAGACCGAAGAATTTCAGATC
65 TGGAATAGACCGAAGAATTTCAGATC
*
22480788 TTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
*** ** **
22480853 GGAGCGGA-TTAA-AA-TAAAGGATC
66 GGAATAGACCGAAGAATTTCA-GATC
* ** * * * * * *
22480876 TTTTCTCTATGAAG-TTACAGTAGAGTAGATCGCATC-AG--GTCCTATCTCCCTGAGATTACAG
1 TTATCTCCCT-AAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
*
22480937 TGGAATAGACCGAAGAATTTCATATC
65 TGGAATAGACCGAAGAATTTCAGATC
* * *
22480963 TTATCTCCCTAAGATTACATCAGAGCAGATTGAAGCTGGTAATCCTATCTCCATGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
22481028 GGAATAGACCGAAGAATTTCAGATC
66 GGAATAGACCGAAGAATTTCAGATC
* * * *
22481053 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAATCTTATCTCCCTGAGATTACAGT
1 TTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
22481118 G
66 G
22481119 AAGCGGATTA
Statistics
Matches: 325, Mismatches: 76, Indels: 32
0.75 0.18 0.07
Matches are distributed among these distances:
85 52 0.16
86 7 0.02
87 67 0.21
88 62 0.19
89 5 0.02
90 132 0.41
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (90 bp):
TTATCTCCCTAAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
GGAATAGACCGAAGAATTTCAGATC
Found at i:22481058 original size:265 final size:265
Alignment explanation
Indices: 22480753--22481239 Score: 848
Period size: 265 Copynumber: 1.8 Consensus size: 265
22480743 TATCTCTCTA
22480753 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
1 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
* *
22480818 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTTTCTC
66 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATAAAGGATCTTATCTC
*
22480883 TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAGTGGAATAGACC
131 TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAGTGGAATAAACC
* *
22480948 GAAGAATTTCATATCTTATCTCCCTAAGATTACATCAGAGCAGATTGAAGCTGGTAATCCTATCT
196 GAAGAATTACAGATCTTATCTCCCTAAGATTACATCAGAGCAGATTGAAGCTGGTAATCCTATCT
22481013 CCATG
261 CCATG
*
22481018 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
1 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
* * *
22481083 TGAAGCTGGTAATCTTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATCAAGGATCTTATCTC
66 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATAAAGGATCTTATCTC
* * * *
22481148 TCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTGTCTCCTTGAGATTACAGTGGAATAAACC
131 TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAGTGGAATAAACC
*
22481213 GAAGAATTACAGATCTTGTCTCCCTAA
196 GAAGAATTACAGATCTTATCTCCCTAA
22481240 ATAGTAGCGG
Statistics
Matches: 208, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
265 208 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (265 bp):
AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATAAAGGATCTTATCTC
TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAGTGGAATAAACC
GAAGAATTACAGATCTTATCTCCCTAAGATTACATCAGAGCAGATTGAAGCTGGTAATCCTATCT
CCATG
Found at i:22483224 original size:19 final size:20
Alignment explanation
Indices: 22483197--22483235 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
22483187 TCTAAATTAC
*
22483197 TATCCACATGA-TTTAAATT
1 TATCAACATGATTTTAAATT
*
22483216 TATCAACATTATTTTAAATT
1 TATCAACATGATTTTAAATT
22483236 CTTTTTACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (20 bp):
TATCAACATGATTTTAAATT
Found at i:22487129 original size:19 final size:18
Alignment explanation
Indices: 22487105--22487152 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
22487095 GGATGCTCTT
*
22487105 TTTGCATTCATTTCATGCA
1 TTTGCATTCATGTCAT-CA
22487124 TTTGCATTACATGTCATCA
1 TTTGCATT-CATGTCATCA
22487143 TATT-CATTCA
1 T-TTGCATTCA
22487153 AGATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 2 0.08
19 15 0.58
20 9 0.35
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTGCATTCATGTCATCA
Found at i:22488843 original size:44 final size:44
Alignment explanation
Indices: 22488703--22488864 Score: 164
Period size: 44 Copynumber: 3.6 Consensus size: 44
22488693 AAAGGGCTTC
* *
22488703 TCTCCCTGAGATTACATCGGAGCAGATTGAAGCTGGTAATCCTA
1 TCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAATCTTA
* * ** ** * *
22488747 TCTCCATGAGATTACAGTGGAATAGACCGAAGAAT-TTCAGATCTTA
1 TCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CTGGT-A-ATCTTA
* *
22488793 TCTCCCTGAGATTACAGCGGAGCAGATTGCAGCTGGTAATCTTT
1 TCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAATCTTA
* *
22488837 TCTCCCTGAGATTACAGTGGAGCGGATT
1 TCTCCCTGAGATTACAGCGGAGCAGATT
22488865 AAAATCAAGT
Statistics
Matches: 92, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
44 57 0.62
45 4 0.04
46 31 0.34
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAATCTTA
Found at i:22488879 original size:44 final size:44
Alignment explanation
Indices: 22488703--22488907 Score: 130
Period size: 44 Copynumber: 4.6 Consensus size: 44
22488693 AAAGGGCTTC
* ** *
22488703 TCTCCCTGAGATTACA-TCGGAGCAGATTGAAGCTGGTAATCCTA
1 TCTCCCTGAGATTACAGT-GGAGCAGATTAAAGCAAGTAATCTTA
* ** *** *
22488747 TCTCCATGAGATTACAGTGGAATAGACCGAAG-AATTTCAGATCTTA
1 TCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAA-GT-A-ATCTTA
* ** ** *
22488793 TCTCCCTGAGATTACAGCGGAGCAGATTGCAGCTGGTAATCTTT
1 TCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAAGTAATCTTA
* *
22488837 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATCAAGT-ATCTTA
1 TCTCCCTGAGATTACAGTGGAGCAGATT-AAAGCAAGTAATCTTA
* * *
22488881 TCTCTCTGA-AGTTACAGTAGAGTAGAT
1 TCTCCCTGAGA-TTACAGTGGAGCAGAT
22488908 CGCATCAGGT
Statistics
Matches: 122, Mismatches: 32, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
43 1 0.01
44 83 0.68
45 7 0.06
46 31 0.25
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAAGTAATCTTA
Found at i:22490951 original size:19 final size:20
Alignment explanation
Indices: 22490923--22490962 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
22490913 TTCTAAATTA
*
22490923 TTATCCACATGA-TTTAAAT
1 TTATCAACATGATTTTAAAT
*
22490942 TTATCAACATTATTTTAAAT
1 TTATCAACATGATTTTAAAT
22490962 T
1 T
22490963 CTTTTTACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (20 bp):
TTATCAACATGATTTTAAAT
Found at i:22492763 original size:3 final size:3
Alignment explanation
Indices: 22492755--22492801 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
22492745 TTCAAAGAAA
22492755 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22492802 CTAAGATACT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22492951 original size:16 final size:17
Alignment explanation
Indices: 22492930--22492963 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22492920 TTTCAAATTT
22492930 TATAA-TTTCTTAAAAA
1 TATAATTTTCTTAAAAA
*
22492946 TATAATTTTTTTAAAAA
1 TATAATTTTCTTAAAAA
22492963 T
1 T
22492964 TTATAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TATAATTTTCTTAAAAA
Found at i:22495247 original size:22 final size:21
Alignment explanation
Indices: 22495212--22495300 Score: 63
Period size: 22 Copynumber: 3.9 Consensus size: 21
22495202 TGTATTAGTT
22495212 TATATATCTA-TTTACCTTTTTA
1 TATATAT-TATTTTA-CTTTTTA
*
22495234 TATATATTATTTTATTTTATTA
1 TATATATTATTTTACTTT-TTA
*
22495256 TGTACTATTATTTTAATTCTTTTTA
1 TATA-TATTATTTT-A--CTTTTTA
*
22495281 TCATATATTATATCTACTTT
1 T-ATATATTAT-TTTACTTT
22495301 CATAATGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
21 5 0.09
22 17 0.31
23 13 0.24
24 1 0.02
25 11 0.20
26 7 0.13
ACGTcount: A:0.28, C:0.09, G:0.01, T:0.62
Consensus pattern (21 bp):
TATATATTATTTTACTTTTTA
Found at i:22495545 original size:20 final size:20
Alignment explanation
Indices: 22495502--22495555 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
22495492 CATATCTTTG
22495502 ATTTATATATATATACTTAT
1 ATTTATATATATATACTTAT
* *
22495522 ATTTTTATATATA-ATTTAT
1 ATTTATATATATATACTTAT
*
22495541 AATTTATATACATAT
1 -ATTTATATATATAT
22495556 CCATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.18
20 23 0.82
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTATATATATATACTTAT
Found at i:22495546 original size:18 final size:21
Alignment explanation
Indices: 22495502--22495572 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 21
22495492 CATATCTTTG
22495502 ATTTATATATATATACTTATAT
1 ATTTATATATATATA-TTATAT
*
22495524 TTTTATATATA-AT-TTATA-
1 ATTTATATATATATATTATAT
*
22495542 ATTTATATACATATCCA-TATAT
1 ATTTATATATATAT--ATTATAT
*
22495564 ATCTATATA
1 ATTTATATA
22495573 CACTTTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
18 9 0.22
19 7 0.17
21 6 0.15
22 18 0.45
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTTATATATATATATTATAT
Found at i:22495654 original size:16 final size:16
Alignment explanation
Indices: 22495633--22495663 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22495623 TACAATTTTT
22495633 ATATACATATATATAC
1 ATATACATATATATAC
22495649 ATATACATATATATA
1 ATATACATATATATA
22495664 TCTTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATACATATATATAC
Found at i:22495802 original size:13 final size:13
Alignment explanation
Indices: 22495786--22495817 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
22495776 TGTATAATTG
22495786 ATTTGTCCTTTTT
1 ATTTGTCCTTTTT
22495799 ATTTGTCCTTTTT
1 ATTTGTCCTTTTT
22495812 ATTTGT
1 ATTTGT
22495818 TGTTGTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.12, G:0.09, T:0.69
Consensus pattern (13 bp):
ATTTGTCCTTTTT
Found at i:22496181 original size:73 final size:73
Alignment explanation
Indices: 22496039--22496181 Score: 216
Period size: 73 Copynumber: 2.0 Consensus size: 73
22496029 CTTTTCAAAC
* * * *
22496039 TCAAGTTTTAAACGATCTCGGGAATTAAGAAGAATCGTGTCCTAACTTACTGGGCATGATCCCTG
1 TCAAGTTTTAAACGATCTCGGGAACTAAGAAAAATCGTGTCCTAACATACTGGGCATGATCCCTA
22496104 TTTTTTCT
66 TTTTTTCT
* *
22496112 TCAAGTTTTAAGCGATCTCGGGAACTAAGAAAAGATCGTGTCCTAACATATTGGGCATGAT-CCT
1 TCAAGTTTTAAACGATCTCGGGAACTAAGAAAA-ATCGTGTCCTAACATACTGGGCATGATCCCT
22496176 ATTTTT
65 ATTTTT
22496182 AAATCCGAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 38 0.60
74 25 0.40
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (73 bp):
TCAAGTTTTAAACGATCTCGGGAACTAAGAAAAATCGTGTCCTAACATACTGGGCATGATCCCTA
TTTTTTCT
Found at i:22496981 original size:137 final size:137
Alignment explanation
Indices: 22496735--22497014 Score: 560
Period size: 137 Copynumber: 2.0 Consensus size: 137
22496725 GAATTTACGA
22496735 TCCTTTCATTGCATTTCATTTTTATGGTCTGCATTATTTTGATGTGTTTGCTTTATTGGTTCGAG
1 TCCTTTCATTGCATTTCATTTTTATGGTCTGCATTATTTTGATGTGTTTGCTTTATTGGTTCGAG
22496800 TCTTTTAATCTCTGCATATTACATCACATAATTGGTTGACTTTACCTTTTTGAGTGGGAGTGAGA
66 TCTTTTAATCTCTGCATATTACATCACATAATTGGTTGACTTTACCTTTTTGAGTGGGAGTGAGA
22496865 ATCTATC
131 ATCTATC
22496872 TCCTTTCATTGCATTTCATTTTTATGGTCTGCATTATTTTGATGTGTTTGCTTTATTGGTTCGAG
1 TCCTTTCATTGCATTTCATTTTTATGGTCTGCATTATTTTGATGTGTTTGCTTTATTGGTTCGAG
22496937 TCTTTTAATCTCTGCATATTACATCACATAATTGGTTGACTTTACCTTTTTGAGTGGGAGTGAGA
66 TCTTTTAATCTCTGCATATTACATCACATAATTGGTTGACTTTACCTTTTTGAGTGGGAGTGAGA
22497002 ATCTATC
131 ATCTATC
22497009 TCCTTT
1 TCCTTT
22497015 GTGAGGTCTT
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 143 1.00
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (137 bp):
TCCTTTCATTGCATTTCATTTTTATGGTCTGCATTATTTTGATGTGTTTGCTTTATTGGTTCGAG
TCTTTTAATCTCTGCATATTACATCACATAATTGGTTGACTTTACCTTTTTGAGTGGGAGTGAGA
ATCTATC
Found at i:22498853 original size:5 final size:5
Alignment explanation
Indices: 22498834--22498892 Score: 72
Period size: 5 Copynumber: 12.4 Consensus size: 5
22498824 TAGTGGAGGC
*
22498834 AACAA AA-AGA AACAA AAC-A AA-AA AACAA AACAA AATAA AACAA AACAA
1 AACAA AACA-A AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA
22498882 AA-AA AACAA AA
1 AACAA AACAA AA
22498893 TACCTTCTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
4 11 0.23
5 35 0.74
6 1 0.02
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.02
Consensus pattern (5 bp):
AACAA
Found at i:22498854 original size:15 final size:14
Alignment explanation
Indices: 22498834--22498892 Score: 93
Period size: 15 Copynumber: 4.1 Consensus size: 14
22498824 TAGTGGAGGC
22498834 AACAAAAAGAAACAA
1 AACAAAAA-AAACAA
22498849 AAC-AAAAAAACAA
1 AACAAAAAAAACAA
22498862 AACAAAATAAAACAA
1 AACAAAA-AAAACAA
22498877 AACAAAAAAAACAA
1 AACAAAAAAAACAA
22498891 AA
1 AA
22498893 TACCTTCTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.21
14 16 0.38
15 17 0.40
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.02
Consensus pattern (14 bp):
AACAAAAAAAACAA
Found at i:22498866 original size:28 final size:29
Alignment explanation
Indices: 22498834--22498892 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 29
22498824 TAGTGGAGGC
22498834 AACAAAA-AGAAACAAAAC-AAAAAAACAA
1 AACAAAATA-AAACAAAACAAAAAAAACAA
22498862 AACAAAATAAAACAAAACAAAAAAAACAA
1 AACAAAATAAAACAAAACAAAAAAAACAA
22498891 AA
1 AA
22498893 TACCTTCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.02
Consensus pattern (29 bp):
AACAAAATAAAACAAAACAAAAAAAACAA
Found at i:22498892 original size:24 final size:23
Alignment explanation
Indices: 22498847--22498894 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
22498837 AAAAAGAAAC
*
22498847 AAAACAAAAAAACAAAACAAAAT
1 AAAACAAAAAAAAAAAACAAAAT
22498870 AAAACAAAACAAAAAAAACAAAAT
1 AAAACAAAA-AAAAAAAACAAAAT
22498894 A
1 A
22498895 CCTTCTACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.83, C:0.12, G:0.00, T:0.04
Consensus pattern (23 bp):
AAAACAAAAAAAAAAAACAAAAT
Found at i:22499362 original size:18 final size:18
Alignment explanation
Indices: 22499341--22499375 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22499331 AAAAAAGTGA
22499341 AAGAAAAAAAAAGAAAAG
1 AAGAAAAAAAAAGAAAAG
**
22499359 AAGAACGAAAAAGAAAA
1 AAGAAAAAAAAAGAAAA
22499376 AGAGAGGCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAAAAGAAAAG
Found at i:22500311 original size:50 final size:50
Alignment explanation
Indices: 22500253--22502069 Score: 1100
Period size: 50 Copynumber: 36.4 Consensus size: 50
22500243 GTTGCAGTTA
* *
22500253 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACGGTACAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
** * * * * * **
22500303 AATGGATTGAA-CCTACAACGGTGAATCATGCTTCCCCT-ACATTGTAATTA
1 AAAAGATTGAAGCC-ACAACGGTGAATCTTACTT-CCCTGACAGTGCAGTGG
* *
22500353 AAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* ** * * * * * * **
22500403 AATAGATTGAAGCTGCAACGGTGAATCTTGCTTCCCCGGCATTGAAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * *
22500453 AAAAGATTGAAGCCACAACGATGAATCTTACTTCCCTGGCAGTGTAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** *
22500503 AACAGATTGAAGCTACAACGGAAAATCTTACTTCCCTAGCCA-TGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACAGTGCAGTGG
* * * * * * * **
22500553 AACAGATTGAAACTACAACGGTGAATCTTACTTCCCCGACATTGTAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * *
22500603 AAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
** * * * * * **
22500653 AACAA-ATTGAAGTTACAATGGTGAATCTTGCTTCCCCGACATTGCAATTA
1 AA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* *
22500703 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT-AGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGA-CAGTGCAGTGG
* ** * * * * * * **
22500753 AACAGATTGAAGGTACAACGGCGAATCTTGCTTCCCGGACATTACAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * *** *
22500803 AAAAGCTTGAAGCCACAATGGCGAATCTTACTTCCCTGGTGGTGCAATGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
** ** ** * * * * **
22500853 ATCAGATTGAAGGTACAACGGCAAATCTTGCTT-TCTCGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACAGTGCAGTGG
* * *
22500903 AAAAGATTGAAGCCACAACGGTGAATCTTACTCCCCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * * * * * **
22500953 AACAA-ATTGAAGCTAAAATGGCGAATCTTGCTT-CCTCGACATTGCAATTA
1 AA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACAGTGCAGTGG
* * * * * *
22501003 AAAATATTTAAGCCACAACGATGAATCTTACTTCTCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** * * * * **
22501053 AATAGATTAAAGGTAGAACGGTGAATCTTACTTCCCTGATATTG-ATATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCA-GTGG
* ** *
22501103 AAAATATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCAGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** * * * * * **
22501153 AACAGATTCAAGCTGCAACAGTGAATCTTACTTCCCCGACATTACAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * *
22501203 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCTCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* ** * * * * **
22501253 AATAGATTGAAGGTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* *
22501303 AAAAGATTGATGCCACAACGG-GAAATCTTACTTCCCTGGA-GGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTG-AATCTTACTTCCCT-GACAGTGCAGTGG
* * * * * * *
22501353 AACAGATTGAAGCTACAATGGTGAATCTTGC-TCCCTGACATTGCAAT-T
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
** *** *
22501401 AAAATGATTGAAGCCACAACGACGAATCTTACTTCCCTGGTGGTGCAATGG
1 AAAA-GATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * ** * * * **
22501452 AACAGATTGAAGCTACAATGGCAAATCTTGCTTTCCC-GACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTAC-TTCCCTGACAGTGCAGTGG
* * * *
22501502 AAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGA-GGTACAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACAGTGCAGTGG
* * * * * * *
22501552 AACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAAT-T
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** * * *
22501601 AAAACGATTGAAGCCACAATGGCGAATCTTACTTTACTGGCGGTGCAGTGC
1 AAAA-GATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * * ** * * * * **
22501652 AACAGATGGAAGCTACAATGGCAAATCTTGCTTCCCCGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * ** *
22501702 AAAAGATTGAAGCCACAACAGCGAATCTTACTTCCTTG-GTGATGTAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAG-TGCAGTGG
* * * * * * * * * **
22501752 AATAGATTGAAGCTATAACAGTGAATCTTGCTTCCCCGGCATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * *
22501802 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTTG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
** * ** * * **
22501852 AACAA-ATTGAAGTTACAACGGCGAATCTTGTTTCCCTGACATTGCATTTA
1 AA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * * *
22501902 AAAAGATTAAAGCCATAACAGTGAATTTTACTTCCCTGGCAGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** * * * * * * **
22501952 AATAGATTAAAGTTATAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
* * * *
22502002 AAAAGATTGAAGTCACAACGGTGAATTTTACTTCCCT-AGCGGTGTAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGA-CAGTGCAGTGG
*
22502052 AACAA-ATTGAAGCTACAA
1 AA-AAGATTGAAGCCACAA
22502070 TAACGAATCT
Statistics
Matches: 1301, Mismatches: 429, Indels: 74
0.72 0.24 0.04
Matches are distributed among these distances:
48 5 0.00
49 66 0.05
50 1191 0.92
51 39 0.03
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAGTGG
Found at i:22502080 original size:100 final size:100
Alignment explanation
Indices: 22500506--22502069 Score: 2027
Period size: 100 Copynumber: 15.7 Consensus size: 100
22500496 GTAGTGGAAC
* ** * ** *
22500506 AGATTGAAGCTACAACGGAAAATCTTACTTCCCTAGCCATGCAGTGGAACAGATTGAAACTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
22500571 CGGTGAATCTTACTTCCCCGACATTGTAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
22500606 AGATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAACAAATTGAAGTTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
22500671 TGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* *
22500706 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGGTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
22500771 CGGCGAATCTTGCTTCCCGGACATTACAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
22500806 AGCTTGAAGCCACAATGGCGAATCTTACTTCCCTGGTGGTGCAATGGATCAGATTGAAGGTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
22500871 CGGCAAATCTTGCTTTCTCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
22500906 AGATTGAAGCCACAACGGTGAATCTTACTCCCCTGGCGGTGCAGTGGAACAAATTGAAGCTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
22500971 TGGCGAATCTTGCTTCCTCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * ** * * * * *
22501006 ATATTTAAGCCACAACGATGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTAAAGGTAGAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
22501071 CGGTGAATCTTACTTCCCTGATATTG-ATATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCA-ATTAAAA
* * * * *
22501106 ATATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTCAAGCTGCAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
22501171 CAGTGAATCTTACTTCCCCGACATTACAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
22501206 AGATTGAAGCCACAACGGTGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGGTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
22501271 CGGCGAATCTTGCTTCCCTGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* *
22501306 AGATTGATGCCACAACGG-GAAATCTTACTTCCCTGGAGGTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGCG-AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
* * *
22501370 ATGGTGAATCTTGC-TCCCTGACATTGCAATTAAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
22501405 TGATTGAAGCCACAACGACGAATCTTACTTCCCTGGTGGTGCAATGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
22501470 TGGCAAATCTTGCTTTCCCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * *
22501505 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGAGGTACAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
22501570 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * ** * *
22501605 CGATTGAAGCCACAATGGCGAATCTTACTTTACTGGCGGTGCAGTGCAACAGATGGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
22501670 TGGCAAATCTTGCTTCCCCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * *
22501705 AGATTGAAGCCACAACAGCGAATCTTACTTCCTTGGTGATGTAGTGGAATAGATTGAAGCTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
22501770 CAGTGAATCTTGCTTCCCCGGCATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * *
22501805 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTTGAACAAATTGAAGTTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
22501870 CGGCGAATCTTGTTTCCCTGACATTGCATTTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * * * * *
22501905 AGATTAAAGCCATAACAGTGAATTTTACTTCCCTGGCAGTGCAGTGGAATAGATTAAAGTTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
22501970 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
22502005 AGATTGAAGTCACAACGGTGAATTTTACTTCCCTAGCGGTGTAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
22502070 TAACGAATCT
Statistics
Matches: 1272, Mismatches: 187, Indels: 10
0.87 0.13 0.01
Matches are distributed among these distances:
99 92 0.07
100 1179 0.93
101 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
CGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
Found at i:22502878 original size:23 final size:23
Alignment explanation
Indices: 22502848--22502892 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
22502838 GACTACGGTA
*
22502848 GTGGTCCCTCTGCTTTTGCAACC
1 GTGGTCCCTCCGCTTTTGCAACC
22502871 GTGGTCCCTCCGCTTTTGCAAC
1 GTGGTCCCTCCGCTTTTGCAAC
22502893 GCGTTGCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.36, G:0.22, T:0.33
Consensus pattern (23 bp):
GTGGTCCCTCCGCTTTTGCAACC
Found at i:22503211 original size:23 final size:23
Alignment explanation
Indices: 22503172--22503217 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
22503162 CTATTTACCT
22503172 TTTTATATATATATATTATTTTA
1 TTTTATATATATATATTATTTTA
*
22503195 TTTTAT-TATGTACTATTATTTTA
1 TTTTATATATATA-TATTATTTTA
22503218 ATTCTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTATATATATATATTATTTTA
Found at i:22503597 original size:12 final size:12
Alignment explanation
Indices: 22503580--22503616 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
22503570 TTACAATTTT
22503580 TATATACATATA
1 TATATACATATA
22503592 TATATACATATA
1 TATATACATATA
* *
22503604 CATATATATATA
1 TATATACATATA
22503616 T
1 T
22503617 CTTTTACTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATACATATA
Found at i:22503604 original size:18 final size:18
Alignment explanation
Indices: 22503581--22503615 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
22503571 TACAATTTTT
22503581 ATATACATATATATATAC
1 ATATACATATATATATAC
22503599 ATATACATATATATATA
1 ATATACATATATATATA
22503616 TCTTTTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATACATATATATATAC
Found at i:22504125 original size:74 final size:74
Alignment explanation
Indices: 22504004--22504145 Score: 212
Period size: 74 Copynumber: 1.9 Consensus size: 74
22503994 TTTCAAACTC
* * ** * *
22504004 AAGTTTTAAATGATCTCGGGAATTGAGACGAGATCGTGTCCTAACTTACTGGGCATGATCCCTTT
1 AAGTTTTAAACGATCTCGGGAATTAAGAAAAAATCGTGTCCTAACTTACTGGGCATGATCCATTT
22504069 TTTTTTCTT
66 TTTTTTCTT
* *
22504078 AAGTTTTAAGCGATCTCGGGAATTAAGAAAAAATCGTGTCCTAACTTACTGTGCATGATCCATTT
1 AAGTTTTAAACGATCTCGGGAATTAAGAAAAAATCGTGTCCTAACTTACTGGGCATGATCCATTT
22504143 TTT
66 TTT
22504146 AAATCCAAGA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (74 bp):
AAGTTTTAAACGATCTCGGGAATTAAGAAAAAATCGTGTCCTAACTTACTGGGCATGATCCATTT
TTTTTTCTT
Found at i:22507720 original size:44 final size:46
Alignment explanation
Indices: 22507639--22507728 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
22507629 ATGTGTAATG
* * *
22507639 GAATAGAGGCGTAATAGGTAATCATTTTGTTTGGTTGAATGGAATA
1 GAATAAAGGCATAATAGGTAATCATTGTGTTTGGTTGAATGGAATA
*
22507685 GAATAAAGGCATAATA-GTATTC-TTGTGTTTGGTTGAATGGAATA
1 GAATAAAGGCATAATAGGTAATCATTGTGTTTGGTTGAATGGAATA
22507729 ATGTTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 21 0.52
45 5 0.12
46 14 0.35
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (46 bp):
GAATAAAGGCATAATAGGTAATCATTGTGTTTGGTTGAATGGAATA
Found at i:22507916 original size:18 final size:18
Alignment explanation
Indices: 22507893--22508100 Score: 111
Period size: 18 Copynumber: 11.9 Consensus size: 18
22507883 TTATTATTAA
22507893 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
22507911 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
*
22507928 ATATGAATTTACT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
22507946 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* * *
22507962 ATAAAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
22507981 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
22507993 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
22508011 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
* *
22508028 ATATGAATATACT-AAAAT
1 ATAT-AATTTAATAAAAAT
* *
22508046 CATA-ATATATAACACTATAAA-
1 -ATATA-AT-TTA-A-TAAAAAT
*
22508067 ATATAATTTAACAAAAAT
1 ATATAATTTAATAAAAAT
22508085 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
22508101 TTCTTAGTAT
Statistics
Matches: 143, Mismatches: 27, Indels: 40
0.68 0.13 0.19
Matches are distributed among these distances:
12 1 0.01
13 5 0.03
14 2 0.01
15 4 0.03
16 8 0.06
17 34 0.24
18 68 0.48
19 11 0.08
20 5 0.03
21 2 0.01
22 3 0.02
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.38
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:22508006 original size:100 final size:100
Alignment explanation
Indices: 22507873--22508221 Score: 518
Period size: 100 Copynumber: 3.5 Consensus size: 100
22507863 TTAATCATAT
*
22507873 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
22507938 ACTAAAATCATAATATATAATACTATAAAATATAA
66 ACTAAAATCATAATATATAATACTATAAAATATAA
*
22507973 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
*
22508038 ACTAAAATCATAATATATAACACTATAAAATATAA
66 ACTAAAATCATAATATATAATACTATAAAATATAA
* * * * ***
22508073 TTTAACA-AA--A--A-T--ATATAATTTAATAAAATTCT-TAGTATTAAATATTCTTATATGAA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATA--ATTTAATA-AAATATATGAA
22508129 TTTACTAAAATCATAATATATAATACTATAAAATATAA
63 TTTACTAAAATCATAATATATAATACTATAAAATATAA
22508167 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
22508222 TCTTAGTATT
Statistics
Matches: 218, Mismatches: 19, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
91 2 0.01
92 18 0.08
93 7 0.03
94 51 0.23
95 3 0.01
97 2 0.01
99 3 0.01
100 105 0.48
101 7 0.03
102 18 0.08
103 2 0.01
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (100 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
ACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:22510937 original size:23 final size:22
Alignment explanation
Indices: 22510886--22510937 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
22510876 CCTCGTCTTT
*
22510886 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
22510908 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
22510931 TTCTTTT
1 TTCTTTT
22510938 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:22510946 original size:12 final size:12
Alignment explanation
Indices: 22510895--22510950 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
22510885 TTTCTTTTGT
22510895 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
22510908 -TCATTTTC-TC
1 TTCTTTTTCAAC
22510918 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
22510931 TTCTTTTTCAAT
1 TTCTTTTTCAAC
22510943 TTCTTTTT
1 TTCTTTTT
22510951 GTTTCACATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 23 0.66
13 7 0.20
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:22517353 original size:123 final size:124
Alignment explanation
Indices: 22517129--22517407 Score: 481
Period size: 123 Copynumber: 2.3 Consensus size: 124
22517119 TTATTTCTAG
*
22517129 TTGACGTTTCTG-GTCAAATAGTATAAAATCGTTTCTACCAGGATGCTATTTGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
* *
22517193 GAAATCGTGCCCTCGTGGACGCGATTTCGCTATAGTTGGTCATGTAAGAAGTAA-TGTTT
65 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTGTTT
*
22517252 TTGACGTTTCTGAGCAAATAGCATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
*
22517317 AAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTT
66 AAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTGTTT
*
22517376 TTGACATTTCTGAGCAAATAGTATAAAATCGC
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGC
22517408 GCCCTCGTGG
Statistics
Matches: 147, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
123 112 0.76
124 35 0.24
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTGTTT
Found at i:22520715 original size:58 final size:58
Alignment explanation
Indices: 22520623--22521190 Score: 580
Period size: 58 Copynumber: 9.6 Consensus size: 58
22520613 AAATTATGTA
*
22520623 AAATTAGGTTAGGG--ACGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAAT
1 AAATTAGGTTAGGGTTA-GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
*
22520680 AAATTAGGTTAGGGTTAGGGTTTTTAATTATATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * * *
22520738 AAATTAGATTAGGTTTAGGGTTTTTAAATAAATTAGGTTAGTGTTAGGG-TTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * ***
22520795 GAATTAGTTTAGGGTTAGGGTTTAGGATTAAATTAGGTTAGGGTTA-GGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
*
22520852 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTGGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * * *
22520910 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTTTATT
1 AAATTAGGTTAGGGTTA-GGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTTAATT
** *
22520970 AAATTAGGTTAGGGTTAGGGTTAGGGTTT--TTACTTTTAGGTTAGGGTTAGGGTTTTTACTT
1 AAATTAGGTTAGGGTTAGGGTT----TTTAATTA-AATTAGGTTAGGGTTAGGGTTTTTAATT
*** * ** * * * *
22521031 ---TTAGGTTAGGGTTAGGGTTAAGATTTAGGGTTTAGGGTTTAAGGCTTAAGGCTTAGGGTT-T
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTA--AATTA-GG-TT-AGGGTT-AGGGTT---TTTAA
22521092 TT
57 TT
* *
22521094 AAATAAATTAGGTTAGGGTTAGGGTTTTTAAATAAATTAGGTTAGGGTTAGGGTTTTTAATG
1 -AA---ATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
22521156 AAATTAGGTTAGGGTTAGGGTTTTTACTTTAATTA
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA
22521191 TATCAAATAA
Statistics
Matches: 426, Mismatches: 56, Indels: 57
0.79 0.10 0.11
Matches are distributed among these distances:
56 5 0.01
57 112 0.26
58 161 0.38
59 36 0.08
60 29 0.07
61 19 0.04
62 18 0.04
63 5 0.01
64 7 0.02
65 5 0.01
66 2 0.00
67 2 0.00
68 3 0.01
70 22 0.05
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (58 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:22520851 original size:23 final size:23
Alignment explanation
Indices: 22520807--22520881 Score: 62
Period size: 28 Copynumber: 3.0 Consensus size: 23
22520797 ATTAGTTTAG
* *
22520807 GGTTAGGGTTTAGG-ATTAAATTA
1 GGTTAGGG-TTAGGTTTTTAATTA
22520830 GGTTAGGGTTAGGTTTTTAATTAAATTA
1 GGTTAGGGTTAGG--TTT--TT-AATTA
22520858 GGTTAGGGTTAGGGTTTTTAATTA
1 GGTTAGGGTTA-GGTTTTTAATTA
22520882 AATTAGGTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
22 5 0.12
23 8 0.19
24 5 0.12
25 3 0.07
27 4 0.09
28 16 0.37
29 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (23 bp):
GGTTAGGGTTAGGTTTTTAATTA
Found at i:22521015 original size:26 final size:26
Alignment explanation
Indices: 22520982--22521049 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
22520972 ATTAGGTTAG
22520982 GGTTAGGGTTAGGGTTTTTACTTTTA
1 GGTTAGGGTTAGGGTTTTTACTTTTA
22521008 GGTTAGGGTTAGGGTTTTTACTTTTA
1 GGTTAGGGTTAGGGTTTTTACTTTTA
22521034 GGTTAGGGTTAGGGTT
1 GGTTAGGGTTAGGGTT
22521050 AAGATTTAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.15, C:0.03, G:0.35, T:0.47
Consensus pattern (26 bp):
GGTTAGGGTTAGGGTTTTTACTTTTA
Found at i:22521125 original size:29 final size:29
Alignment explanation
Indices: 22521083--22521181 Score: 182
Period size: 29 Copynumber: 3.4 Consensus size: 29
22521073 GGCTTAAGGC
22521083 TTAGGGTTTTTAAATAAATTAGGTTAGGG
1 TTAGGGTTTTTAAATAAATTAGGTTAGGG
22521112 TTAGGGTTTTTAAATAAATTAGGTTAGGG
1 TTAGGGTTTTTAAATAAATTAGGTTAGGG
22521141 TTAGGGTTTTT-AATGAAATTAGGTTAGGG
1 TTAGGGTTTTTAAAT-AAATTAGGTTAGGG
22521170 TTAGGGTTTTTA
1 TTAGGGTTTTTA
22521182 CTTTAATTAT
Statistics
Matches: 68, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
28 3 0.04
29 65 0.96
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.43
Consensus pattern (29 bp):
TTAGGGTTTTTAAATAAATTAGGTTAGGG
Found at i:22521190 original size:29 final size:29
Alignment explanation
Indices: 22520623--22521049 Score: 548
Period size: 29 Copynumber: 14.8 Consensus size: 29
22520613 AAATTATGTA
22520623 AAATTAGGTTAGGG--ACGGGTTTTTAATT
1 AAATTAGGTTAGGGTTA-GGGTTTTTAATT
*
22520651 AAATTAGGTTAGGGTTAGGGTTTTTAAAT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
22520680 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
22520709 ATATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* * *
22520738 AAATTAGATTAGGTTTAGGGTTTTTAAAT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
22520767 AAATTAGGTTAGTGTTAGGG-TTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* * ***
22520795 GAATTAGTTTAGGGTTAGGGTTTAGGATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
22520824 AAATTAGGTTAGGGTTA-GGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
22520852 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
22520881 AAATTAGGTTGGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* * *
22520910 AAATTAGGTTAGTGTTACGGTTTTTTTATT
1 AAATTAGGTTAGGGTTA-GGGTTTTTAATT
*
22520940 AAATTAGGTTAGGGTTAGGGTTTTTTTATT
1 AAATTAGGTTAGGGTTAGGG-TTTTTAATT
22520970 AAATTAGGTTAGGGTTAGGGTTAGGGTTT--TT
1 AAATTAGGTTAGGGTTAGGGTT----TTTAATT
** *
22521001 ACTTTTAGGTTAGGGTTAGGGTTTTTACTT
1 A-AATTAGGTTAGGGTTAGGGTTTTTAATT
22521031 ---TTAGGTTAGGGTTAGGGTT
1 AAATTAGGTTAGGGTTAGGGTT
22521050 AAGATTTAGG
Statistics
Matches: 355, Mismatches: 31, Indels: 28
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.05
28 66 0.19
29 187 0.53
30 58 0.16
31 3 0.01
32 19 0.05
33 3 0.01
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:22522474 original size:42 final size:42
Alignment explanation
Indices: 22522421--22522503 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
22522411 AAATTCAAAG
* *
22522421 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAATGTTTT
1 GGATAACAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT
22522463 GGATAACAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
1 GGATAACAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
22522504 CACACATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.34
Consensus pattern (42 bp):
GGATAACAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT
Found at i:22523129 original size:11 final size:11
Alignment explanation
Indices: 22523113--22523143 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
22523103 ATCAAAGTTT
*
22523113 AAAAAAAAGCA
1 AAAAAAAAACA
22523124 AAAAAAAAACA
1 AAAAAAAAACA
22523135 AAAAAAAAA
1 AAAAAAAAA
22523144 TTCGAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.90, C:0.06, G:0.03, T:0.00
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:22523143 original size:52 final size:49
Alignment explanation
Indices: 22523073--22523179 Score: 128
Period size: 49 Copynumber: 2.1 Consensus size: 49
22523063 GCACCAAAAG
* *
22523073 AAAACAAACAAACAAAAAAATTATATATTGATCAAAGTTT-AAA-AAAAAGCAA
1 AAAAAAAACAAA-AAAAAAATTAGA-A-T-ATCAAAGTTTAAAAGAAAAAG-AA
*
22523125 AAAAAAAACAAAAAAAAAATTCGAATATCAAAGTTTAAAAGAAAAAGAA
1 AAAAAAAACAAAAAAAAAATTAGAATATCAAAGTTTAAAAGAAAAAGAA
22523174 AAAAAA
1 AAAAAA
22523180 TTCGAAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
48 10 0.20
49 12 0.24
50 7 0.14
51 10 0.20
52 11 0.22
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.16
Consensus pattern (49 bp):
AAAAAAAACAAAAAAAAAATTAGAATATCAAAGTTTAAAAGAAAAAGAA
Done.