Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 79 of 172
Found at i:22529069 original size:50 final size:50
Alignment explanation
Indices: 22528885--22529076 Score: 154
Period size: 50 Copynumber: 3.8 Consensus size: 50
22528875 ACATTTGGGT
* * *
22528885 GATGAG-A-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGA
1 GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCA-C--CGA
** ** * * * *
22528936 GATTATGAGAGGTCCTATGTAGGACCATGTCTAGGACATGGCGTTGGCACCGA
1 G---ATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
** *
22528989 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
* * * *
22529039 TATGAGAACTCCCGTGTAAGACCATATCTGGGATATGG
1 GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGG
22529077 AATTTGCAGT
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
50 73 0.63
51 1 0.01
53 3 0.03
54 5 0.04
55 1 0.01
56 33 0.28
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:22545687 original size:41 final size:39
Alignment explanation
Indices: 22545639--22545749 Score: 109
Period size: 37 Copynumber: 2.8 Consensus size: 39
22545629 TCGACCTTGA
22545639 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
22545679 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
22545717 GCCGATGAGACACTGGGTGTCAACTATTGCTTC
1 GTCGATGAGACACTGGGTGTCAACTATTACTTC
22545750 AAACTATCCG
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 6 0.11
40 2 0.04
41 17 0.31
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:22546477 original size:17 final size:17
Alignment explanation
Indices: 22546428--22546478 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
22546418 ATGTGGCATG
*
22546428 TACCTAAGTAATGTACA
1 TACCTAAGTAATGTATA
*
22546445 TACCTAGGTAATGTATA
1 TACCTAAGTAATGTATA
*
22546462 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
22546479 GGGATTAGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:22549580 original size:37 final size:38
Alignment explanation
Indices: 22549530--22549603 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
22549520 CCCATTTCAT
22549530 TCATTTTGTA-TTTTGGCAAAATATGCTATCTTGATTC
1 TCATTTTGTATTTTTGGCAAAATATGCTATCTTGATTC
* * *
22549567 TCATTTTGTATTTTTGGCAAAATTTGTTATTTTGATT
1 TCATTTTGTATTTTTGGCAAAATATGCTATCTTGATT
22549604 AATTCATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 10 0.30
38 23 0.70
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.54
Consensus pattern (38 bp):
TCATTTTGTATTTTTGGCAAAATATGCTATCTTGATTC
Found at i:22550311 original size:44 final size:44
Alignment explanation
Indices: 22550166--22551045 Score: 388
Period size: 44 Copynumber: 19.6 Consensus size: 44
22550156 TTATGGCGAA
* ** *
22550166 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATCAAAGCCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATACAAG
* * * * *
22550210 TCTTCTCTCCCTAAAGTTGCAGTGGAGCAGACTGAAA-ATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTAAAGAT-ACAAG
* * *
22550255 CCTTATCTCCCTGAATTTGTAGTGGAGCAAGTTAAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* * * *
22550299 TCTTATCTCCCTGTAGTTGCAGTGGAAC-AGATTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * * * *
22550344 CCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* * * *
22550388 CCTTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGATACCAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATA-CAAG
* * * * *
22550432 TTTTATCTCCCTGAAGTTGCAGTGGAG-TAGATTGAAGCTATTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * * *
22550476 TCCTATCTTCCTGAAGTTGCAGTGGAGC-GGATTATAATGAT-GAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTA-AA-GATACAAG
* * * * * *
22550520 TCCTATAC-CTCTGAATTTGCAGTAGG-TC-GGATTGAATCTACCATGACAAG
1 TCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAAG-TT-AA---A-GAT-ACAAG
* * * * * * *
22550570 TTTTATCTACCTGAAGTTGCAATGGAG-TAGACTGAAGATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGAT-ACAAG
* * *
22550615 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* * * * * * *
22550659 TCTTAACCCCCTAAAGTTGTAGTGGAGC-AGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * * * *
22550704 CCTTATCTCTCTGAAGTTGCTGTGGAGCAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* ** * * *
22550748 CCTTATCTTGCTGAAGTTGCAGTGAAGCAGGTTGAAGATACCAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATA-CAAG
* ** * * *
22550792 TCTTATCTCCCTGTAGTTGCAGCAGAGC-AGATTGAAGCTATTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * *
22550836 TCCTATCTCCTTGAAGTTGCAGTAGAGAG-AA-TTAAA-ATGATGAA-
1 TCTTATCTCCCTGAAGTTGCAGT-G-GAGCAAGTTAAAGAT-A-CAAG
* * * *
22550880 TCCTATAC-CTCTGAAGTTGCAGTAGG-TC-AGATTAAATCTACCATGACAAG
1 TCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAAG-TT-AA---A-GAT-ACAAG
* * * *
22550930 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AGACTGAAGATAGAAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* ** * * *
22550975 CCTTATCTCCCTGAAGTTTTAGTAGAGCAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
22551019 TCTTATCTCCCTGAAGTTGCAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
22551046 TGAATCGAAG
Statistics
Matches: 647, Mismatches: 140, Indels: 98
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.00
43 7 0.01
44 377 0.58
45 187 0.29
46 13 0.02
47 3 0.00
48 1 0.00
49 12 0.02
50 46 0.07
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
Found at i:22550330 original size:133 final size:133
Alignment explanation
Indices: 22550164--22550457 Score: 358
Period size: 133 Copynumber: 2.2 Consensus size: 133
22550154 TATTATGGCG
* * * ** *
22550164 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCA-CTAGTCTTCTCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGCAAACCTTATCTCCCTAAAGTT
* * *
22550228 GCAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAATTTGTAGTGGAGCAAGTTAAAGA
66 GCAGTGGAACAGACTGAAAAT-ACAAACCTTATCTCCCTGAAGTTGAAGTGGAGCAAGTTAAAGA
22550293 TA-C
130 TACC
* ** * *
22550296 AAGTCTTATCTCCCTGTAGTTGCAGTGGAACAGATTGAAGATAGCAAACCTTATCTCCCTGAAGT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGCAAACCTTATCTCCCTAAAGT
* ** * * * *
22550361 TGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGA
65 TGCAGTGGAACAGACTGAAAATACAAACCTTATCTCCCTGAAGTTGAAGTGGAGCAAGTTAAAGA
22550426 TACC
130 TACC
*
22550430 AATTTTATCTCCCTGAAGTTGCAGTGGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGA
22550458 GTAGATTGAA
Statistics
Matches: 136, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
132 2 0.01
133 98 0.72
134 36 0.26
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (133 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGCAAACCTTATCTCCCTAAAGTT
GCAGTGGAACAGACTGAAAATACAAACCTTATCTCCCTGAAGTTGAAGTGGAGCAAGTTAAAGAT
ACC
Found at i:22550779 original size:360 final size:360
Alignment explanation
Indices: 22550208--22551045 Score: 1286
Period size: 360 Copynumber: 2.3 Consensus size: 360
22550198 CAAAGCCACT
* * * * *
22550208 AGTCTTCTCTCCCTAAAGTTGCAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAATTT
1 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
* * * *
22550273 GTAGTGGAGCAAGTTAAAGATACAAGTCTTATCTCCCTGTAGTTGCAGTGGAACAGATTGAAGAT
66 GTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
22550338 AGCAAACCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAA
131 AGCAAACCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAA
* * ** *
22550403 GTTGAAGTGGAGCAGGTTGAAGATACCAATTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
196 GTTGAAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTGAA
* * * *
22550468 GCTATTAATCCTATCTTCC-TGAAGTTGCAGTGGAGCGGATTATAATGATGAATCCTATACCTCT
261 GCTATTAATCCTATC-TCCTTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTCT
* * *
22550532 GAATTTGCAGTAGGTCGGATTGAATCTACCATGACA
325 GAAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
* * *
22550568 AGTTTTATCTACCTGAAGTTGCAATGGAGTAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
1 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
* * * *
22550633 GTAGTGGAGCAGGTTAAAGATACAAGTCTTAACCCCCTAAAGTTGTAGTGGAGCAGACTGAAGAT
66 GTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
* * **
22550698 AGCAAACCTTATCTCTCTGAAGTTGCT-GTGGAGCAGGTTGAAGATACAAGCCTTATCTTGCTGA
131 AGCAAACCTTATCTCCCTGAAGTTG-TAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGA
* *
22550762 AGTTGCAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGTAGTTGCAGCAGAGCAGATTGA
195 AGTTGAAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTGA
22550827 AGCTATTAATCCTATCTCCTTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTCT
260 AGCTATTAATCCTATCTCCTTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTCT
22550892 GAAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
325 GAAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
*
22550928 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGA-AAACCTTATCTCCCTGAAGT
1 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATA-ACAAACCTTATCTCCCTGAAGT
* * *
22550992 TTTAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
65 TGTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
22551046 TGAATCGAAG
Statistics
Matches: 430, Mismatches: 45, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
359 3 0.01
360 425 0.99
361 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (360 bp):
AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
GTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
AGCAAACCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAA
GTTGAAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTGAA
GCTATTAATCCTATCTCCTTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTCTG
AAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
Found at i:22551064 original size:89 final size:87
Alignment explanation
Indices: 22550167--22551045 Score: 626
Period size: 89 Copynumber: 9.8 Consensus size: 87
22550157 TATGGCGAAT
* ** ** * * *
22550167 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACTAGTCTTCTCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
*
22550232 TGGAGCAGACTGAAAATAACAAAC
66 TGGAG-AGACTGAAGAT-ACAAAC
* * * * *
22550256 CTTATCTCCCTGAATTTGTAGTGGAGCAAGTTAAAGATACAAGTCTTATCTCCCTGTAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* *
22550321 TGGAACAGATTGAAGATAGCAAAC
66 TGG-AGAGACTGAAGATA-CAAAC
* * * *
22550345 CTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAAGTTGAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
** * *
22550410 TGGAGCAGGTTGAAGATACCAAT
66 TGGAG-AGACTGAAGATACAAAC
* * * * * * *
22550433 TTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTATTAA-TCCTATCTTCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CAAGTCTTATCTCCCTGAAGTTGCA
* * * * *
22550497 GTGGAGCGGATTATAATGAT-GAATC
65 GTGGAG-AGACT-GAA-GATACAAAC
* * * * * *
22550522 C-TATAC-CTCTGAATTTGCAGTAGG-TC-GGATTGAATCTACCATGACAAGTTTTATCTACCTG
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGG-TTG-A---A-GAT-ACAAGTCTTATCTCCCTG
*
22550583 AAGTTGCAATGGAGTAGACTGAAGATAACAAAC
57 AAGTTGCAGTGGAG-AGACTGAAGAT-ACAAAC
* * * * * *
22550616 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGATACAAGTCTTAACCCCCTAAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
22550681 TGGAGCAGACTGAAGATAGCAAAC
66 TGGAG-AGACTGAAGATA-CAAAC
* * * **
22550705 CTTATCTCTCTGAAGTTGCTGTGGAGCAGGTTGAAGATACAAGCCTTATCTTGCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* ** * *
22550770 TGAAGCAGGTTGAAGATACCAAT
66 TGGAG-AGACTGAAGATACAAAC
* ** * * * * *
22550793 CTTATCTCCCTGTAGTTGCAGCAGAGCAGATTGAAGCTATTAA-TCCTATCTCCTTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CAAGTCTTATCTCCCTGAAGTTGCA
* * * * * *
22550857 GTAGAGAGAATTAAAATGATGAATC
65 GTGGAGAGACTGAAGAT-A-CAAAC
* * * * *
22550882 C-TATAC-CTCTGAAGTTGCAGTAGG-TCAGATTAAATCTACCATGACAAGTCTTATCTCCCTGA
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGGTT-GA---A-GAT-ACAAGTCTTATCTCCCTGA
*
22550944 AGTTGCAGTGGAGCAGACTGAAGATAGAAAAC
58 AGTTGCAGTGGAG-AGACTGAAGATA-CAAAC
** *
22550976 CTTATCTCCCTGAAGTTTTAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
22551041 TGGAG
66 TGGAG
22551046 TGAATCGAAG
Statistics
Matches: 610, Mismatches: 141, Indels: 78
0.74 0.17 0.09
Matches are distributed among these distances:
87 8 0.01
88 162 0.27
89 301 0.49
90 8 0.01
91 2 0.00
92 5 0.01
93 8 0.01
94 68 0.11
95 46 0.08
96 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGAGACTGAAGATACAAAC
Found at i:22552595 original size:3 final size:3
Alignment explanation
Indices: 22552589--22552718 Score: 86
Period size: 3 Copynumber: 43.0 Consensus size: 3
22552579 TTTATTATCC
* * *
22552589 ATT ATT ATT ATT -TCT ATT ATT ATT ATA ATTT ATT ATT ATT GTT GTT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
* * * * * *
22552635 GTG GTT GTT ACTT A-T ATT ATT ATT ATT ATC ATT ATT AAT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
22552680 ATT GTT ATT AAT ATT ATT ATT GTT ACTT -GT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
22552719 GGCACTATTC
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
2 4 0.04
3 90 0.88
4 8 0.08
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:22553919 original size:45 final size:45
Alignment explanation
Indices: 22553854--22553994 Score: 149
Period size: 45 Copynumber: 3.1 Consensus size: 45
22553844 ACAACACATT
* * *
22553854 TGCAGATTAAA-TCTGCTAATATGGTGTGGGTAAACCACTAATTGG
1 TGCAGATAAAAGT-TGCTAATATGGTGTGGATAAAACACTAATTGG
* * * *
22553899 TGCAGATAAAAGTTGTTAATACGGTGTGGATAAAACACTAATCGA
1 TGCAGATAAAAGTTGCTAATATGGTGTGGATAAAACACTAATTGG
*** * * *
22553944 AATAGATAAAAGTTGCTAATATAGTGTGGATAAATCACTAAATGG
1 TGCAGATAAAAGTTGCTAATATGGTGTGGATAAAACACTAATTGG
22553989 TGCAGA
1 TGCAGA
22553995 CAAGCTGCTA
Statistics
Matches: 75, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
45 74 0.99
46 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (45 bp):
TGCAGATAAAAGTTGCTAATATGGTGTGGATAAAACACTAATTGG
Found at i:22554144 original size:34 final size:34
Alignment explanation
Indices: 22554065--22554136 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
22554055 CTCAAATAGA
*
22554065 TCAATACGGTAGCAATCAATATGATTATAACAAT
1 TCAATACAGTAGCAATCAATATGATTATAACAAT
* * * *
22554099 TCAATACAGTAGTAATTAATATGCTTATAACAGT
1 TCAATACAGTAGCAATCAATATGATTATAACAAT
22554133 TCAA
1 TCAA
22554137 CTTAGTAGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (34 bp):
TCAATACAGTAGCAATCAATATGATTATAACAAT
Found at i:22554466 original size:29 final size:28
Alignment explanation
Indices: 22554429--22554543 Score: 124
Period size: 28 Copynumber: 4.0 Consensus size: 28
22554419 TAAAGCAGGA
*
22554429 AAAATTATAAAATTTGAAAAAATAGGGAC
1 AAAATTATAAAATCT-AAAAAATAGGGAC
* **
22554458 AAATTTATAAAATCTAAAAAATAGGGGT
1 AAAATTATAAAATCTAAAAAATAGGGAC
*
22554486 AAAATTATAAAATATAAAAAATATGGG-C
1 AAAATTATAAAATCTAAAAAATA-GGGAC
* * *
22554514 AAAACTATATAATCTGAAAAATAGAGGAC
1 AAAATTATAAAATCTAAAAAATAG-GGAC
22554543 A
1 A
22554544 CACGACCGTG
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.01
28 53 0.74
29 18 0.25
ACGTcount: A:0.57, C:0.05, G:0.13, T:0.24
Consensus pattern (28 bp):
AAAATTATAAAATCTAAAAAATAGGGAC
Found at i:22554534 original size:56 final size:57
Alignment explanation
Indices: 22554429--22554537 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 57
22554419 TAAAGCAGGA
* **
22554429 AAAATTATAAAATTTGAAAAAATAGGGACAAATTTATAAAATCTAAAAAATAGGGGT
1 AAAATTATAAAATATGAAAAAATAGGGACAAAACTATAAAATCTAAAAAATAGGGGT
* *
22554486 AAAATTATAAAATAT-AAAAAATATGGG-CAAAACTATATAATCTGAAAAATAG
1 AAAATTATAAAATATGAAAAAATA-GGGACAAAACTATAAAATCTAAAAAATAG
22554538 AGGACACACG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 29 0.63
57 17 0.37
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.26
Consensus pattern (57 bp):
AAAATTATAAAATATGAAAAAATAGGGACAAAACTATAAAATCTAAAAAATAGGGGT
Found at i:22556664 original size:21 final size:21
Alignment explanation
Indices: 22556625--22556665 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
22556615 AATAATTTGA
** *
22556625 ATAAATTTTATGTACTTTAAT
1 ATAAATTTTATAAAATTTAAT
22556646 ATAAATTTTATAAAATTTAA
1 ATAAATTTTATAAAATTTAA
22556666 AAGATTTCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
ATAAATTTTATAAAATTTAAT
Found at i:22556839 original size:32 final size:31
Alignment explanation
Indices: 22556803--22556877 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
22556793 TTAAATAATA
*
22556803 AATTAAGCCCTCGTAAAATAACTAAAAAAATC
1 AATTAAGCCATCGTAAAATAA-TAAAAAAATC
** *
22556835 AATTAAATCATTGTAAAATAATAAAAAAATC
1 AATTAAGCCATCGTAAAATAATAAAAAAATC
22556866 AATTAAGCCATC
1 AATTAAGCCATC
22556878 CTCACCAATC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 19 0.53
32 17 0.47
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (31 bp):
AATTAAGCCATCGTAAAATAATAAAAAAATC
Found at i:22564095 original size:11 final size:10
Alignment explanation
Indices: 22564054--22564110 Score: 78
Period size: 11 Copynumber: 5.3 Consensus size: 10
22564044 CCTAAATCAT
22564054 TTCTCTCAAA
1 TTCTCTCAAA
22564064 TTCTCTCCAATA
1 TTCTCT-CAA-A
22564076 TTCTCTCAAA
1 TTCTCTCAAA
22564086 TTCTTCTCAAA
1 TTC-TCTCAAA
22564097 TTCTTCTCAAA
1 TTC-TCTCAAA
22564108 TTC
1 TTC
22564111 CTCTTAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.23
11 27 0.61
12 7 0.16
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:22564344 original size:16 final size:16
Alignment explanation
Indices: 22564325--22564384 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 16
22564315 GATTTATGAA
22564325 ATTTTAAATAATTTTT
1 ATTTTAAATAATTTTT
22564341 ATTTTATTAGA-AATTTCTTAT
1 ATTTTA--A-ATAA-TT-TT-T
22564362 AATTTTAAATAATTTTT
1 -ATTTTAAATAATTTTT
22564379 ATTTTA
1 ATTTTA
22564385 TGATTTCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
16 12 0.33
17 1 0.03
18 5 0.14
19 6 0.17
20 5 0.14
21 1 0.03
22 6 0.17
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTTTAAATAATTTTT
Found at i:22565330 original size:7 final size:7
Alignment explanation
Indices: 22565318--22565346 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
22565308 ATATAGTCGA
22565318 TTAGTAT
1 TTAGTAT
22565325 TTAGTAT
1 TTAGTAT
22565332 TTAGTAT
1 TTAGTAT
22565339 TTAGTAT
1 TTAGTAT
22565346 T
1 T
22565347 ATGTATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (7 bp):
TTAGTAT
Found at i:22569922 original size:126 final size:126
Alignment explanation
Indices: 22569696--22570107 Score: 635
Period size: 126 Copynumber: 3.3 Consensus size: 126
22569686 GGCCAAACAT
* * *
22569696 GAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAACATC
1 GAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* * * * * *
22569761 TTGCTTAAAATGTTTTTGAAACTATTTGCTTAGAAACGTCTACTCAAAATTATTTTTTCAG
66 CTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAG
* *
22569822 GAGCTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTCTTTCAATACTTTTGCTGACAAAGCATC
1 GAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* *
22569887 CTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACTTCTTCTCGAAATTATTTTTTCAG
66 CTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAG
* * * *
22569948 GTGCTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTTCAGTACTTTTGCCGACAAAGCATC
1 GAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* *
22570013 CTACTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTTGAAATTATTTTTTCAG
66 CTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAG
* *
22570074 GAGCTACTGTAGCAAAAGAGTGTCCACATGAGAG
1 GAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAG
22570108 TTTTTTTAAA
Statistics
Matches: 260, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 260 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (126 bp):
GAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
CTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAG
Found at i:22578185 original size:17 final size:17
Alignment explanation
Indices: 22578159--22578197 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
22578149 TTTCAAACAA
*
22578159 TATATTTTATTATTT-AT
1 TATATGTTATT-TTTAAT
22578176 TATATGTTATTTTTAAT
1 TATATGTTATTTTTAAT
22578193 TATAT
1 TATAT
22578198 ATTTGTGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
TATATGTTATTTTTAAT
Found at i:22578200 original size:24 final size:22
Alignment explanation
Indices: 22578163--22578208 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
22578153 AAACAATATA
*
22578163 TTTTATTATTTATTATATGTTAT
1 TTTTATTATATATT-TATGTTAT
*
22578186 TTTTAATTATATATTTGTGTTAT
1 TTTT-ATTATATATTTATGTTAT
22578209 AAATATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTTATTATATATTTATGTTAT
Found at i:22585983 original size:3 final size:3
Alignment explanation
Indices: 22585975--22586023 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
22585965 ATACTAATTA
* * * *
22585975 AAT AAT AAT AAG AAA AAT AAAT AAT AAT AAT GAT AAT AAT AAG AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
22586021 AAT
1 AAT
22586024 TCGAAAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:22587027 original size:14 final size:13
Alignment explanation
Indices: 22587008--22587049 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
22586998 CTTTGAATAT
22587008 TTTTGATTGCTTTA
1 TTTTGATT-CTTTA
*
22587022 TTTTGATTTTTTA
1 TTTTGATTCTTTA
*
22587035 TTTCGATT-TTTA
1 TTTTGATTCTTTA
22587047 TTT
1 TTT
22587050 CAGAAGCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 7 0.27
13 11 0.42
14 8 0.31
ACGTcount: A:0.14, C:0.05, G:0.10, T:0.71
Consensus pattern (13 bp):
TTTTGATTCTTTA
Found at i:22587036 original size:13 final size:13
Alignment explanation
Indices: 22587008--22587049 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
22586998 CTTTGAATAT
*
22587008 TTTTGATTGCTTTA
1 TTTTGATT-TTTTA
22587022 TTTTGATTTTTTA
1 TTTTGATTTTTTA
*
22587035 TTTCGA-TTTTTA
1 TTTTGATTTTTTA
22587047 TTT
1 TTT
22587050 CAGAAGCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 9 0.35
13 9 0.35
14 8 0.31
ACGTcount: A:0.14, C:0.05, G:0.10, T:0.71
Consensus pattern (13 bp):
TTTTGATTTTTTA
Found at i:22587638 original size:44 final size:44
Alignment explanation
Indices: 22587590--22588175 Score: 361
Period size: 44 Copynumber: 13.0 Consensus size: 44
22587580 GTACAGGAGG
* * * *
22587590 TGTAGTTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* ** *
22587634 TGTAGCTTCAATTTGCTCCACTTTAACTTCAGGGAGATAATATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * *
22587678 TGTAGCTTCAACCTGCTCCATTGCAACTTCAGGGAAATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
*
22587722 TGTCA-TTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TGT-AGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
*** * ** * * ** * *
22587766 TGTAGCTTGTGGCTTTAATCC-CTTCCGACTTCAAAGAAATAAGACTCGCAC
1 TGTAGC-T-TCAATCTGCTCCAC-TGCAACTTCAGGGAGATAAGA-T----T
* * * * * *
22587817 AGTAGATTTAATCCGAC-CCACTGCAACTTCAGAGG-TATAGGATT
1 TGTAGCTTCAATCTG-CTCCACTGCAACTTCAG-GGAGATAAGATT
* * * * *
22587861 TGTCGCTTGAATTTACTCCACTGCAACTTTAGGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * *
22587905 TGTGACTTGCAACTTTAATCTGTTCCACTGCAACTTCAGGGATATTAGATT
1 TGT-A---G---CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
** * * * * *
22587956 CACTATCTTCAATCTACTCCACTACAACTTCAAGAAGATAAGATT
1 -TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * * * * * *
22588001 TGTAACTTTAATTTCCTCTACTACAACTTCAGGAAGATAAGGTT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * * *
22588045 TGTAGCTTTAATTTGTTCTACTGCAACTTCAGAGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * *
22588089 TGCTATCTTCAATCTGCTCCATTGCAACTTCAGAGAGATAAGGTT
1 TG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * *
22588134 TGTGGCTTTAATTTGCTCCACTACAACTTCAGGGAGATAAGA
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
22588176 ATTGCCACGA
Statistics
Matches: 412, Mismatches: 106, Indels: 48
0.73 0.19 0.08
Matches are distributed among these distances:
43 4 0.01
44 254 0.62
45 71 0.17
46 22 0.05
47 1 0.00
48 2 0.00
49 17 0.04
50 3 0.01
51 37 0.09
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (44 bp):
TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
Found at i:22588103 original size:133 final size:133
Alignment explanation
Indices: 22587917--22588174 Score: 356
Period size: 133 Copynumber: 1.9 Consensus size: 133
22587907 TGACTTGCAA
* * *
22587917 CTTTAATCTGTTCCACTGCAACTTCAGGGATATTAGATTCACTATCTTCAATCTACTCCACTACA
1 CTTTAATCTGTTCCACTGCAACTTCAGAGAGATAAGATTCACTATCTTCAATCTACTCCACTACA
*
22587982 ACTTCA-AGAAGATAAGATTTGTAACTTTAATTTCCTCTACTACAACTTCAGGAAGATAAGGTTT
66 ACTTCAGAG-AGATAAGATTTGTAACTTTAATTTCCTCCACTACAACTTCAGGAAGATAAGGTTT
22588046 GTAG
130 GTAG
* * ** * * *
22588050 CTTTAATTTGTTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCATTGCA
1 CTTTAATCTGTTCCACTGCAACTTCAGAGAGATAAGATTCACTATCTTCAATCTACTCCACTACA
* ** * *
22588115 ACTTCAGAGAGATAAGGTTTGTGGCTTTAATTTGCTCCACTACAACTTCAGGGAGATAAG
66 ACTTCAGAGAGATAAGATTTGTAACTTTAATTTCCTCCACTACAACTTCAGGAAGATAAG
22588175 AATTGCCACG
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
133 106 0.98
134 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (133 bp):
CTTTAATCTGTTCCACTGCAACTTCAGAGAGATAAGATTCACTATCTTCAATCTACTCCACTACA
ACTTCAGAGAGATAAGATTTGTAACTTTAATTTCCTCCACTACAACTTCAGGAAGATAAGGTTTG
TAG
Found at i:22588136 original size:89 final size:89
Alignment explanation
Indices: 22587972--22588180 Score: 262
Period size: 89 Copynumber: 2.4 Consensus size: 89
22587962 CTTCAATCTA
* * *
22587972 CTCCACTACAACTTCA-AGAAGATAAGATTTG-TAACTTTAATTTCCTCTACTACAACTTCAGGA
1 CTCCACTACAACTTCAGAG-AGATAAGATTTGCTAACTTCAATCTCCTCCACTACAACTTCAGGA
22588035 AGATAAGGTTTGTAGCTTTAATTTG
65 AGATAAGGTTTGTAGCTTTAATTTG
* * * * * * *
22588060 TTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCATTGCAACTTCA-GAG
1 CTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTCCTCCACTACAACTTCAGGA-
*
22588124 AGATAAGGTTTGTGGCTTTAATTTG
65 AGATAAGGTTTGTAGCTTTAATTTG
* *
22588149 CTCCACTACAACTTCAGGGAGATAAGAATTGC
1 CTCCACTACAACTTCAGAGAGATAAGATTTGC
22588181 CACGATGACT
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
88 27 0.26
89 75 0.74
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (89 bp):
CTCCACTACAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTCCTCCACTACAACTTCAGGAA
GATAAGGTTTGTAGCTTTAATTTG
Found at i:22595252 original size:7 final size:7
Alignment explanation
Indices: 22595240--22595271 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
22595230 ATATACGAAA
22595240 AAAAAAC
1 AAAAAAC
22595247 AAAAAAC
1 AAAAAAC
22595254 AAAAAAC
1 AAAAAAC
22595261 -AAAAAC
1 AAAAAAC
22595267 AAAAA
1 AAAAA
22595272 TATCATACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:22595259 original size:14 final size:13
Alignment explanation
Indices: 22595240--22595271 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
22595230 ATATACGAAA
22595240 AAAAAACAAAAAAC
1 AAAAAAC-AAAAAC
22595254 AAAAAACAAAAAC
1 AAAAAACAAAAAC
22595267 AAAAA
1 AAAAA
22595272 TATCATACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAACAAAAAC
Found at i:22595407 original size:15 final size:15
Alignment explanation
Indices: 22595389--22595425 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
22595379 AGGAAAAATA
*
22595389 AATAATAATAATGAT
1 AATAATAATAATGAG
*
22595404 AATAATAATAATTAG
1 AATAATAATAATGAG
22595419 AATAATA
1 AATAATA
22595426 CGAAAACCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (15 bp):
AATAATAATAATGAG
Found at i:22598240 original size:9 final size:9
Alignment explanation
Indices: 22598226--22598259 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
22598216 GTTTTCAAAT
*
22598226 TCGAATAAC
1 TCGAATAAA
*
22598235 TCGAATAAT
1 TCGAATAAA
22598244 TCGAATAAA
1 TCGAATAAA
22598253 TCGAATA
1 TCGAATA
22598260 TTAAACTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (9 bp):
TCGAATAAA
Found at i:22598246 original size:18 final size:18
Alignment explanation
Indices: 22598223--22598259 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
22598213 TTGGTTTTCA
*
22598223 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCGAAT
22598241 AATTCGAATAAATCGAAT
1 AATTCGAATAAATCGAAT
22598259 A
1 A
22598260 TTAAACTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.27
Consensus pattern (18 bp):
AATTCGAATAAATCGAAT
Found at i:22598842 original size:84 final size:84
Alignment explanation
Indices: 22598746--22598956 Score: 268
Period size: 84 Copynumber: 2.5 Consensus size: 84
22598736 GATATAGATC
* *
22598746 TTCCATATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCCTAAAATATTAAAT
1 TTCCACATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCATAAAATATTAAAT
* * *
22598811 TCTCTTTTATAT-ATCTATT
66 TCCCTTTCAGATCA-CTATT
* * *
22598830 TTCCACATATGTTATTCTCTTTCCTTTGCCATGTTTGATTTTCTATTTTCCATAAAATATTCAAT
1 TTCCACATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCATAAAATATTAAAT
22598895 TCCCTTTCAGATCACTATT
66 TCCCTTTCAGATCACTATT
* *
22598914 TT--ACATAGTTGTTATTCTCTTT-CTTTTCTCATATTTGACTTTC
1 TTCCACATA--TGTTATTCTCTTTCCTTTAC-CATATTTGATTTTC
22598957 CTTCTCGTCT
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
82 5 0.04
83 5 0.04
84 101 0.90
85 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.53
Consensus pattern (84 bp):
TTCCACATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCATAAAATATTAAAT
TCCCTTTCAGATCACTATT
Found at i:22603748 original size:28 final size:28
Alignment explanation
Indices: 22603717--22603778 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
22603707 CTGATGATAG
*
22603717 TAAACAAGTTTCAATTGCATACCATGCA
1 TAAACAAGTTTCAACTGCATACCATGCA
22603745 TAAACAAGTTTCAACTGCATACCATGCA
1 TAAACAAGTTTCAACTGCATACCATGCA
22603773 TAAACA
1 TAAACA
22603779 GTAATAATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (28 bp):
TAAACAAGTTTCAACTGCATACCATGCA
Found at i:22612252 original size:59 final size:58
Alignment explanation
Indices: 22612189--22612339 Score: 169
Period size: 59 Copynumber: 2.6 Consensus size: 58
22612179 CTTTTGGCTT
*
22612189 TAACTTTTGCTTAAGCCATCCAATGAAGGATTTTCAACTTAACGAG-TATTTTCTCTCAC
1 TAACTTTTGCTTAAACCATCCAATGAAGGATTTTCAACTTAACGAGCT-TTTT-TCTCAC
* * *** * *
22612248 TAACTTTTTCTTAAACCATCAAATGAAGGATTTTTTGCTTAATGAGCTTTTTTTTCAC
1 TAACTTTTGCTTAAACCATCCAATGAAGGATTTTCAACTTAACGAGCTTTTTTCTCAC
* ** *
22612306 TAAATTTTGCTTAAACTGTCCAATGTAGGATTTT
1 TAACTTTTGCTTAAACCATCCAATGAAGGATTTT
22612340 AAGGTTAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
58 33 0.43
59 43 0.56
60 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.42
Consensus pattern (58 bp):
TAACTTTTGCTTAAACCATCCAATGAAGGATTTTCAACTTAACGAGCTTTTTTCTCAC
Found at i:22612348 original size:58 final size:57
Alignment explanation
Indices: 22612193--22612358 Score: 154
Period size: 58 Copynumber: 2.9 Consensus size: 57
22612183 TGGCTTTAAC
* * ** * *
22612193 TTTTGCTTAAGCCATCCAATGAAGGATTTTCAA-CTTAACGAGTATTTTCTCTCACTAAC
1 TTTTGCTTAAACCATCAAATGAAGGATTTT-AAGCTTAATAAGT-TTTT-TTTCACTAAA
* ** *
22612252 TTTTTCTTAAACCATCAAATGAAGGATTTTTTGCTTAATGAGCTTTTTTTTCACTAAA
1 TTTTGCTTAAACCATCAAATGAAGGATTTTAAGCTTAATAAG-TTTTTTTTCACTAAA
** * * *
22612310 TTTTGCTTAAACTGTCCAATGTAGGATTTTAAGGTTAATAAGTTTTTTT
1 TTTTGCTTAAACCATCAAATGAAGGATTTTAAGCTTAATAAGTTTTTTT
22612359 GTTTTTGCCC
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
57 7 0.08
58 41 0.47
59 39 0.44
60 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (57 bp):
TTTTGCTTAAACCATCAAATGAAGGATTTTAAGCTTAATAAGTTTTTTTTCACTAAA
Found at i:22613447 original size:13 final size:13
Alignment explanation
Indices: 22613406--22613455 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
22613396 TTAGCAATAA
22613406 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
* *
22613419 TCTAGAAAAGTGC
1 TTTTGAAAAGTGC
*
22613432 TTTTGAAAAGTAC
1 TTTTGAAAAGTGC
22613445 TTTTGAAAAGT
1 TTTTGAAAAGT
22613456 TTGGTTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:22615915 original size:11 final size:11
Alignment explanation
Indices: 22615895--22615940 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
22615885 AATTTTCTGA
*
22615895 TTTTCGCTCAT
1 TTTTCACTCAT
22615906 TTTTCACTCA-
1 TTTTCACTCAT
22615916 TTTTCACTCAT
1 TTTTCACTCAT
*
22615927 TTTTCGCTCAT
1 TTTTCACTCAT
22615938 TTT
1 TTT
22615941 ACTCCTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.13, C:0.26, G:0.04, T:0.57
Consensus pattern (11 bp):
TTTTCACTCAT
Found at i:22615919 original size:21 final size:21
Alignment explanation
Indices: 22615894--22615944 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
22615884 CAATTTTCTG
*
22615894 ATTTTCGCTCATTTTTCACTC
1 ATTTTCACTCATTTTTCACTC
*
22615915 ATTTTCACTCATTTTTCGCTC
1 ATTTTCACTCATTTTTCACTC
22615936 ATTTT-ACTC
1 ATTTTCACTC
22615945 CTAAATGCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.16, C:0.27, G:0.04, T:0.53
Consensus pattern (21 bp):
ATTTTCACTCATTTTTCACTC
Found at i:22617628 original size:11 final size:11
Alignment explanation
Indices: 22617609--22617676 Score: 57
Period size: 11 Copynumber: 5.8 Consensus size: 11
22617599 AGTGCATAAT
22617609 AAAACAAAACAA
1 AAAACAAAA-AA
22617621 AAAA-AAAACAA
1 AAAACAAAA-AA
**
22617632 AATCCAAAAAA
1 AAAACAAAAAA
22617643 AAAACAAAAAA
1 AAAACAAAAAA
22617654 TGAAAACAAAAACA
1 --AAAACAAAAA-A
*
22617668 AAAATAAAA
1 AAAACAAAA
22617677 GACAAAAGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
11 20 0.43
12 16 0.34
13 10 0.21
14 1 0.02
ACGTcount: A:0.82, C:0.12, G:0.01, T:0.04
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:22617681 original size:13 final size:12
Alignment explanation
Indices: 22617614--22617702 Score: 60
Period size: 13 Copynumber: 7.2 Consensus size: 12
22617604 ATAATAAAAC
22617614 AAAACAAAAA-A
1 AAAACAAAAATA
22617625 AAAAC-AAAATCCA
1 AAAACAAAAAT--A
*
22617638 AAAA-AAAAACA
1 AAAACAAAAATA
*
22617649 AAAA-ATGAAAACA
1 AAAACA--AAAATA
22617662 AAAACAAAAATA
1 AAAACAAAAATA
*
22617674 AAAGACAAAAGTA
1 AAA-ACAAAAATA
*
22617687 ACAAACAAAAGTA
1 A-AAACAAAAATA
22617700 AAA
1 AAA
22617703 TTGAAAATTA
Statistics
Matches: 66, Mismatches: 3, Indels: 17
0.77 0.03 0.20
Matches are distributed among these distances:
10 4 0.06
11 11 0.17
12 10 0.15
13 38 0.58
14 3 0.05
ACGTcount: A:0.79, C:0.11, G:0.04, T:0.06
Consensus pattern (12 bp):
AAAACAAAAATA
Found at i:22617684 original size:7 final size:6
Alignment explanation
Indices: 22617609--22617683 Score: 68
Period size: 6 Copynumber: 12.5 Consensus size: 6
22617599 AGTGCATAAT
*
22617609 AAAAC- AAAACA AAAA-A AAAACA AAATCCA AAAA-A AAAACA AAAA-A
1 AAAACA AAAACA AAAACA AAAACA AAA-ACA AAAACA AAAACA AAAACA
*
22617654 TGAAAACA AAAACA AAAATA AAAGACA AAA
1 --AAAACA AAAACA AAAACA AAA-ACA AAA
22617684 GTAACAAACA
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
5 16 0.28
6 27 0.47
7 14 0.24
8 1 0.02
ACGTcount: A:0.81, C:0.12, G:0.03, T:0.04
Consensus pattern (6 bp):
AAAACA
Found at i:22617723 original size:12 final size:12
Alignment explanation
Indices: 22617693--22617748 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 12
22617683 AGTAACAAAC
*
22617693 AAAAGTAAAATT
1 AAAATTAAAATT
22617705 GAAAATTAAAATT
1 -AAAATTAAAATT
22617718 AAAATTAAAA-T
1 AAAATTAAAATT
22617729 -AAA-TAAAATAT
1 AAAATTAAAAT-T
*
22617740 AAAACTAAA
1 AAAATTAAA
22617749 CTAAATGGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
9 5 0.13
10 3 0.08
11 2 0.05
12 13 0.34
13 15 0.39
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (12 bp):
AAAATTAAAATT
Found at i:22617737 original size:5 final size:6
Alignment explanation
Indices: 22617693--22617748 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
22617683 AGTAACAAAC
*
22617693 AAAAGT AAAATT GAAAATT AAAATT AAAATT AAAA-T -AAA-T AAAATAT
1 AAAATT AAAATT -AAAATT AAAATT AAAATT AAAATT AAAATT AAAAT-T
*
22617740 AAAACT AAA
1 AAAATT AAA
22617749 CTAAATGGCT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 25 0.57
7 11 0.25
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (6 bp):
AAAATT
Found at i:22617742 original size:22 final size:21
Alignment explanation
Indices: 22617711--22617754 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
22617701 AATTGAAAAT
*
22617711 TAAAATTAAAATTAAAATAAA
1 TAAAATTAAAACTAAAATAAA
*
22617732 TAAAATATAAAACTAAACTAAA
1 TAAAAT-TAAAACTAAAATAAA
22617754 T
1 T
22617755 GGCTTTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAAATTAAAACTAAAATAAA
Found at i:22617922 original size:17 final size:18
Alignment explanation
Indices: 22617900--22617933 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22617890 ACAGCCCAGG
22617900 ACACGCCCGTGT-GTCAC
1 ACACGCCCGTGTCGTCAC
22617917 ACACGCCCGTGTCGTCA
1 ACACGCCCGTGTCGTCA
22617934 GGCCGTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (18 bp):
ACACGCCCGTGTCGTCAC
Found at i:22618047 original size:9 final size:10
Alignment explanation
Indices: 22618016--22618040 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22618006 TACTTATTTC
22618016 TTTTTCAAAT
1 TTTTTCAAAT
22618026 TTTTTCAAAT
1 TTTTTCAAAT
22618036 TTTTT
1 TTTTT
22618041 GAATTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTCAAAT
Found at i:22620041 original size:29 final size:29
Alignment explanation
Indices: 22620009--22620081 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
22619999 TCGATTGTCG
*
22620009 ACTATGAAAAGGGATGGTGATGACCATCA
1 ACTATGAAAAGGGATGGTGATGAACATCA
*
22620038 ACTATGAAAAGGGATGGTGATGAACGTCA
1 ACTATGAAAAGGGATGGTGATGAACATCA
*
22620067 AATATGAAAAGGGAT
1 ACTATGAAAAGGGAT
22620082 AGTTTCGACT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.41, C:0.10, G:0.29, T:0.21
Consensus pattern (29 bp):
ACTATGAAAAGGGATGGTGATGAACATCA
Found at i:22631487 original size:25 final size:27
Alignment explanation
Indices: 22631431--22631487 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
22631421 ATAAACATTA
*
22631431 TATTAAATTTAATATTAATATAATCAC
1 TATTAAATTTAATATTAATAAAATCAC
22631458 T-TT-AATATTAA-ATTAATAAAAT-AC
1 TATTAAAT-TTAATATTAATAAAATCAC
22631482 TATTAA
1 TATTAA
22631488 GATAAGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
24 3 0.12
25 15 0.58
26 7 0.27
27 1 0.04
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (27 bp):
TATTAAATTTAATATTAATAAAATCAC
Found at i:22646997 original size:45 final size:45
Alignment explanation
Indices: 22646850--22647286 Score: 298
Period size: 45 Copynumber: 9.6 Consensus size: 45
22646840 AATCCTATAC
* * *
22646850 CCCTGAAGTTGTAGTGG-G-ATGGATTGAAGATCATAGCAAACCTTATCT
1 CCCTGAAGTTGTAGTGGAGCA--GATTGAAG---ATAGCTAATCTTATTT
* * * * * * *
22646898 CCCTAAAGTTGTAGCGGAGTAGGTTGAAGTTA-CTAGTCTTATCT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
* *
22646942 CCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCTAATCTTATTT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
* * *
22646987 CCCTGAAGTTGTAGTGGAACAGACTGAAGATAGCGAATCTTATTT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
* * *
22647032 CCCTGAAGTTGTAGTGGAACAGACTGAAGATAGCGAATCTTATTT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
** * * ** *
22647077 CCCTGAAGTTACAGTGGAACATATTGAAGCTATAAATTATAGATCTTATCT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAG--AT--A-GCTA-ATCTTATTT
* * * * * * *
22647128 CTCTGAAGTTGCAGTTGAGCAGA-T---CATATCAAATCTTATCT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
* * * * * *
22647169 CCCTAAAGTTGCAGTAGAGCAGTTTGAAGTTA-CTAGTCTTATCTT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTAT-TT
** * *
22647214 -TTTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTAATTT
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
** *
22647258 CCCTGAAGTTACAGTGGAACAGATTGAAG
1 CCCTGAAGTTGTAGTGGAGCAGATTGAAG
22647287 CTATATATTA
Statistics
Matches: 314, Mismatches: 59, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
41 28 0.09
42 3 0.01
43 1 0.00
44 68 0.22
45 159 0.51
47 2 0.01
48 22 0.07
49 2 0.01
50 3 0.01
51 26 0.08
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (45 bp):
CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCTAATCTTATTT
Found at i:22647178 original size:92 final size:91
Alignment explanation
Indices: 22647067--22647359 Score: 285
Period size: 92 Copynumber: 3.2 Consensus size: 91
22647057 GAAGATAGCG
*
22647067 AATCTTATTTCCCTGAAGTTACAGTGGAACATATTGAAGCTATAAATTATAGATCTTATCTCTCT
1 AATCTTATCTCCCTGAAGTTACAGTGGAACATATTGAAGCTAT-AATTATAGATCTTATCTCTCT
*
22647132 GAAGTTGCAGTTGAGCAGATCATATCA
65 GAAGTTGCAGTAGAGCAGATCATATCA
* * * * * * *
22647159 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGT-TTGAAG-T-T-A--CTAG-TCTTATCTTTTT
1 AATCTTATCTCCCTGAAGTTACAGTGGAACA-TATTGAAGCTATAATTATAGATCTTATCTCTCT
* * * *
22647217 GAAGTTGTAGTGGAGCAGATTGAAGATAGCA
65 GAAGTTGCAGTAGAGCAGA-T---CATATCA
* * * *
22647248 AATCTAATTTCCCTGAAGTTACAGTGGAACAGATTGAAGCTATATATTACAGATCTTATCTCTCT
1 AATCTTATCTCCCTGAAGTTACAGTGGAACATATTGAAGCTATA-ATTATAGATCTTATCTCTCT
* *
22647313 AAAGTTACAGTAGAGCAGATCATATCA
65 GAAGTTGCAGTAGAGCAGATCATATCA
* *
22647340 AACCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTT
22647360 GCAACGAAGC
Statistics
Matches: 155, Mismatches: 33, Indels: 26
0.72 0.15 0.12
Matches are distributed among these distances:
85 27 0.17
86 4 0.03
88 1 0.01
89 36 0.23
90 2 0.01
91 2 0.01
92 53 0.34
93 2 0.01
95 3 0.02
96 25 0.16
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (91 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAACATATTGAAGCTATAATTATAGATCTTATCTCTCTG
AAGTTGCAGTAGAGCAGATCATATCA
Found at i:22647245 original size:181 final size:181
Alignment explanation
Indices: 22647024--22647516 Score: 616
Period size: 181 Copynumber: 2.7 Consensus size: 181
22647014 AGATAGCGAA
* *
22647024 TCTTATTTCCCTGAAGTTGTAGTGGAACAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTAC
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTAC
* *
22647089 AGTGGAACATATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTTGAGCAGATCA
66 AGTGGAACAAATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
* *
22647154 TATCAAATCTTATCTCCCTAAAGTTGC-A-GTAGAGCAGTTTGAAGTTACTAG
131 TATCAAACCTTATCTCCCTAAAGTTGCAACG-A-AGCAGTTTAAAGTTACTAG
*** * * *
22647205 TCTTATCTTTTTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTAATTTCCCTGAAGTTAC
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTAC
* * * * *
22647270 AGTGGAACAGATTGAAGCTATATATTACAGATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCA
66 AGTGGAACAAATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
* *
22647335 TATCAAACCTTATCTCTCTGAAGTTGCAACGAAGCAGTTTAAAGTTACTAG
131 TATCAAACCTTATCTCCCTAAAGTTGCAACGAAGCAGTTTAAAGTTACTAG
** * *
22647386 TCTTATCTCCCTGAAGTTGCT-GTGGAGCAGACTGAAGGCAACGAATCTTATTTCCCTGGCA-TT
1 TCTTATCTCCCTGAAGTTG-TAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCT-GAAGTT
* * * * * * * *
22647449 GCAGTGGAACAAATTAAAGCTACAAGTTATGGTGAATCTTATCTCCCTGAAGTTGTAGTGGAGCA
64 ACAGTGGAACAAATTGAAGCTATAAATTAT--AG-ATCTTATCTCTCTGAAGTTGCAGTAGAGCA
22647514 GAT
126 GAT
22647517 TGAAGCCATT
Statistics
Matches: 264, Mismatches: 41, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
181 229 0.87
182 5 0.02
183 2 0.01
184 28 0.11
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (181 bp):
TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTAC
AGTGGAACAAATTGAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
TATCAAACCTTATCTCCCTAAAGTTGCAACGAAGCAGTTTAAAGTTACTAG
Found at i:22647629 original size:44 final size:45
Alignment explanation
Indices: 22647573--22647787 Score: 175
Period size: 44 Copynumber: 4.7 Consensus size: 45
22647563 TCAAAGATGG
* *
22647573 CAAACCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGT-TA
1 CAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGTGTA
* * * * * * * **
22647617 CAAGCCTTATCTCCCTGAAGTTACAGTGGAACTGGTTAAAAATAAA
1 CAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTT-GAAGTGTA
* * *
22647663 CCAATCC-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACTGGCTA
1 -CAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAG--T-G-TA
* * * * **
22647712 CAAACCTTATCTCTATGAAGTTGTAGTAGAGTAGGTTGAAG-CCA
1 CAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGTGTA
22647756 CAAACCTTATCTCTCTGAAGTTGCAGTGGAGC
1 CAAACCTTATCTCTCTGAAGTTGCAGTGGAGC
22647788 GGATTAAAGG
Statistics
Matches: 133, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
44 61 0.46
45 5 0.04
46 27 0.20
47 6 0.05
48 5 0.04
49 29 0.22
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
CAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGTGTA
Found at i:22649151 original size:9 final size:9
Alignment explanation
Indices: 22649137--22649217 Score: 50
Period size: 8 Copynumber: 9.6 Consensus size: 9
22649127 AATATTATTT
22649137 TAAAATATA
1 TAAAATATA
22649146 TAAAATATA
1 TAAAATATA
*
22649155 -AAAGTAT-
1 TAAAATATA
*
22649162 GAAAATAATA
1 TAAAAT-ATA
*
22649172 TATAAA-ATC
1 TA-AAATATA
22649181 TAAAA-AT-
1 TAAAATATA
22649188 TAAAATATA
1 TAAAATATA
*
22649197 T-AAATTTA
1 TAAAATATA
*
22649205 AAAAAT-TA
1 TAAAATATA
22649213 TAAAA
1 TAAAA
22649218 AAGTATACAC
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
7 5 0.09
8 29 0.50
9 20 0.34
10 1 0.02
11 3 0.05
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (9 bp):
TAAAATATA
Found at i:22649155 original size:7 final size:7
Alignment explanation
Indices: 22649143--22649207 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
22649133 ATTTTAAAAT
22649143 ATATAAA
1 ATATAAA
22649150 ATATAAA
1 ATATAAA
*
22649157 AGTATGAA
1 A-TATAAA
*
22649165 A-ATAAT
1 ATATAAA
22649171 ATATAAA
1 ATATAAA
*
22649178 ATCTAAA
1 ATATAAA
22649185 A-ATTAAA
1 ATA-TAAA
22649192 ATATATAA
1 ATATA-AA
*
22649200 ATTTAAA
1 ATATAAA
22649207 A
1 A
22649208 AATTATAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
6 4 0.09
7 29 0.63
8 13 0.28
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (7 bp):
ATATAAA
Found at i:22649195 original size:21 final size:21
Alignment explanation
Indices: 22649137--22649208 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
22649127 AATATTATTT
22649137 TAAAATATATAAAATATAAAAGTA
1 TAAAA-AT-TAAAATATAAAA-TA
* * *
22649161 TGAAAA-TAATATATAAAATC
1 TAAAAATTAAAATATAAAATA
*
22649181 TAAAAATTAAAATATATAAATT
1 TAAAAATTAAAATATA-AAATA
22649203 TAAAAA
1 TAAAAA
22649209 ATTATAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 6 0.15
21 19 0.47
22 10 0.25
23 1 0.03
24 4 0.10
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (21 bp):
TAAAAATTAAAATATAAAATA
Found at i:22649280 original size:25 final size:26
Alignment explanation
Indices: 22649247--22649309 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
22649237 ATAACATGCC
22649247 AATTATATAAAATAAAAA-TATAAAA
1 AATTATATAAAATAAAAATTATAAAA
*
22649272 ATTTATATAAAATAAAAATTATAAAA
1 AATTATATAAAATAAAAATTATAAAA
22649298 AATTATATAAAA
1 AATTATATAAAA
22649310 AATAATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 17 0.49
26 18 0.51
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (26 bp):
AATTATATAAAATAAAAATTATAAAA
Found at i:22649293 original size:16 final size:17
Alignment explanation
Indices: 22649258--22649300 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
22649248 ATTATATAAA
22649258 ATAAAAATATAAAAATTT
1 ATAAAAA-ATAAAAATTT
*
22649276 ATATAAAATAAAAA-TT
1 ATAAAAAATAAAAATTT
22649292 ATAAAAAAT
1 ATAAAAAAT
22649301 TATATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 10 0.43
17 7 0.30
18 6 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAAAAATAAAAATTT
Found at i:22649371 original size:18 final size:18
Alignment explanation
Indices: 22649350--22649396 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
22649340 TTTAAAGATT
*
22649350 AAAATTTTATAAAATTAC
1 AAAATTTTACAAAATTAC
*
22649368 AAAATATTT-CAAAATTTC
1 AAAAT-TTTACAAAATTAC
*
22649386 AAAAATTTACA
1 AAAATTTTACA
22649397 TTTTCAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATTTTACAAAATTAC
Found at i:22649491 original size:20 final size:21
Alignment explanation
Indices: 22649429--22649492 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
22649419 TTAAAATTAT
*
22649429 ATTTTCAAAAAAAATATATTTAA
1 ATTTT-AAAAAAAATATA-TAAA
* * *
22649452 ATTTTAAAGAAAGTCT-TAAA
1 ATTTTAAAAAAAATATATAAA
22649472 ATTTTAAAAAAAAT-TATAAA
1 ATTTTAAAAAAAATATATAAA
22649492 A
1 A
22649493 ATCAAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.03
20 20 0.59
22 8 0.24
23 5 0.15
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (21 bp):
ATTTTAAAAAAAATATATAAA
Found at i:22654375 original size:50 final size:48
Alignment explanation
Indices: 22654299--22654496 Score: 135
Period size: 50 Copynumber: 3.9 Consensus size: 48
22654289 TTTTCTGTAT
* * **
22654299 TGCCAATGCCATATCTCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTC-CAGACATGGTCTTACATGGGACCTCTCATATT-G
* *** ** *
22654349 TGCCCATGCCATGTCCGAGACATGGTCTTATGGGGGACCTCTCACCTCG
1 TGCCAATGCCATGTCC-AGACATGGTCTTACATGGGACCTCTCATATTG
* *
22654398 ATGCCTACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 -TGCCAATGCCATGT-CCAGACATGGTCTTACATGGGACCTCTCAT-A--T---TG
* * *
22654454 ATGCAAATGCTATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGT-CCAGACATGGTCTTACATGGGACCTCT
22654497 TTACCCAAAT
Statistics
Matches: 115, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
49 2 0.02
50 71 0.62
51 2 0.02
53 1 0.01
56 39 0.34
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (48 bp):
TGCCAATGCCATGTCCAGACATGGTCTTACATGGGACCTCTCATATTG
Found at i:22661028 original size:50 final size:50
Alignment explanation
Indices: 22660951--22661080 Score: 134
Period size: 50 Copynumber: 2.6 Consensus size: 50
22660941 TGTCATATCT
* * ** * * *
22660951 CAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTCC
1 CAGACATGGTCTTACAGGGGACCTCTCATATCGATGCCCACGCCATGTCC
* ** ** *
22661001 GAGACATGGTCTTATGGGGGACCTCTCACCTCGATGCCTACGCCATGTCC
1 CAGACATGGTCTTACAGGGGACCTCTCATATCGATGCCCACGCCATGTCC
*
22661051 CAGACATGGTCTTACATGGGACCTCTCATA
1 CAGACATGGTCTTACAGGGGACCTCTCATA
22661081 ATCTCAATGA
Statistics
Matches: 61, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.28
Consensus pattern (50 bp):
CAGACATGGTCTTACAGGGGACCTCTCATATCGATGCCCACGCCATGTCC
Found at i:22668925 original size:46 final size:46
Alignment explanation
Indices: 22668820--22669810 Score: 1691
Period size: 46 Copynumber: 21.5 Consensus size: 46
22668810 TACGTATGAT
*
22668820 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* **
22668863 CACTTATCATTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
**
22668909 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
22668955 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669001 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAGGCTACCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT---AC
*
22669050 TTATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 ----CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
**
22669100 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
22669146 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669192 CATTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669238 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
22669284 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
22669330 CACTTATCACTTTGTCACTTGACCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
22669376 CACTTATCACTTTGTCACTTGACCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
22669422 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669468 CACTTATCACTTTGTCACTTGATCAGATAAGTGCAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669514 CACTTATCACTTTGTCACTTGATCAGATAAGTGCAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669560 CACTTATCACTTTGTCACTTGATCAGATAAGTGCAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
**
22669606 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
22669652 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669698 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGTTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
22669744 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
22669790 CACTTATCACTTTGTCACTTG
1 CACTTATCACTTTGTCACTTG
22669811 TCACTGATCA
Statistics
Matches: 908, Mismatches: 30, Indels: 17
0.95 0.03 0.02
Matches are distributed among these distances:
43 9 0.01
44 5 0.01
45 20 0.02
46 828 0.91
49 2 0.00
50 2 0.00
53 42 0.05
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:22678785 original size:45 final size:45
Alignment explanation
Indices: 22678724--22678850 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
22678714 TACGACGTAA
* * * *
22678724 AATGAACAAGACCATGGTAGAGAGATACTATAGCATCAAATCGGG
1 AATGAATAAGACCATGGTAGAAAGACACCATAGCATCAAATCGGG
* * * * *
22678769 AATGAATAAGATCATGGTTGAAAGACACCATGGCATCTAGTCGGG
1 AATGAATAAGACCATGGTAGAAAGACACCATAGCATCAAATCGGG
* * * *
22678814 AATGAATAAGACCATGGTTGAAAAATACCATGGCATC
1 AATGAATAAGACCATGGTAGAAAGACACCATAGCATC
22678851 CTTCAACCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (45 bp):
AATGAATAAGACCATGGTAGAAAGACACCATAGCATCAAATCGGG
Found at i:22679920 original size:19 final size:19
Alignment explanation
Indices: 22679877--22679920 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
22679867 CCTTGTTTCC
**
22679877 CAAATTTTCAATTTTTTTT
1 CAAATTTTCAATTTTACTT
*
22679896 CTAAATTTTCTATTTTACTT
1 C-AAATTTTCAATTTTACTT
22679916 CAAAT
1 CAAAT
22679921 CGATCTCGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.57
Consensus pattern (19 bp):
CAAATTTTCAATTTTACTT
Found at i:22684689 original size:45 final size:45
Alignment explanation
Indices: 22684625--22684754 Score: 215
Period size: 45 Copynumber: 2.9 Consensus size: 45
22684615 AGGGAATGAT
22684625 TAAGACCATAGTTGAAAGACACTATGGCATTATACCAAAATTACG
1 TAAGACCATAGTTGAAAGACACTATGGCATTATACCAAAATTACG
*
22684670 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAATTACG
1 TAAGACCATAGTTGAAAGACACTATGGCATTATACCAAAATTACG
* * * *
22684715 TAAGACCATAGTTGAAAGAAATTATGGCATCATATCAAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATTATACCAAAA
22684755 ACGAGTAAGA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCATTATACCAAAATTACG
Found at i:22684763 original size:45 final size:44
Alignment explanation
Indices: 22684625--22684792 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 44
22684615 AGGGAATGAT
*
22684625 TAAGACCATAGTTGAAAGACACTATGGCATTATACCAAAATTACG
1 TAAGACCATAGTTGAAAGACACTATGGCATCATACCAAAA-TACG
22684670 TAAGACCATAGTTGAAAGACACTATGGCA-CTATACCAAAATTACG
1 TAAGACCATAGTTGAAAGACACTATGGCATC-ATACCAAAA-TACG
* * *
22684715 TAAGACCATAGTTGAAAGAAATTATGGCATCATATCAAAA-ACGAG
1 TAAGACCATAGTTGAAAGACACTATGGCATCATACCAAAATAC--G
* **
22684760 TAAGA-CAGTAGCTGAAAGACGTTATGGCATCAT
1 TAAGACCA-TAGTTGAAAGACACTATGGCATCAT
22684793 GATTCTAATG
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 106 0.95
46 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (44 bp):
TAAGACCATAGTTGAAAGACACTATGGCATCATACCAAAATACG
Found at i:22684809 original size:45 final size:46
Alignment explanation
Indices: 22684715--22684884 Score: 183
Period size: 45 Copynumber: 3.8 Consensus size: 46
22684705 CAAAATTACG
* ** * *
22684715 TAAGACCA-TAGTTGAAAGAAATTATGGCATCAT-A-TCAAAAACGAG
1 TAAGACCAGTAGCTGAAAGATGTTATGGCATCATGATTC--TAACGAA
* *
22684760 TAAGA-CAGTAGCTGAAAGACGTTATGGCATCATGATTCTAATGAA
1 TAAGACCAGTAGCTGAAAGATGTTATGGCATCATGATTCTAACGAA
* *
22684805 TAAGACCAG-AGCTGAAAGATGTTATGGCATCACGATTCTAACGAG
1 TAAGACCAGTAGCTGAAAGATGTTATGGCATCATGATTCTAACGAA
22684850 TAAGACCA-TAGCTGAAAGATGCTT-TGGCATCATGA
1 TAAGACCAGTAGCTGAAAGATG-TTATGGCATCATGA
22684885 ATCAGACGGA
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
44 2 0.02
45 98 0.91
46 6 0.06
47 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (46 bp):
TAAGACCAGTAGCTGAAAGATGTTATGGCATCATGATTCTAACGAA
Found at i:22684809 original size:90 final size:90
Alignment explanation
Indices: 22684715--22684929 Score: 224
Period size: 90 Copynumber: 2.4 Consensus size: 90
22684705 CAAAATTACG
*
22684715 TAAGACCATAGTTGAAAGAAATTATGGCATCA-TA-TCAAAAACGAGTAAGA-CAGTAGCTGAAA
1 TAAGACCATAGTTGAAAGAAATTATGGCATCACGATTC--AAACGAGTAAGACCA-TAGCTGAAA
* *
22684777 GACG-TTATGGCATCATGATTCTA-ATGAA
63 GACGCTT-TGGCATCATGAATC-AGACGAA
* * ** * *
22684805 TAAGACCAGAGCTGAAAGATGTTATGGCATCACGATTCTAACGAGTAAGACCATAGCTGAAAGAT
1 TAAGACCATAGTTGAAAGAAATTATGGCATCACGATTCAAACGAGTAAGACCATAGCTGAAAGAC
*
22684870 GCTTTGGCATCATGAATCAGACGGA
66 GCTTTGGCATCATGAATCAGACGAA
* * * *
22684895 TAAGTCCATAGTTGAAAGACACTATGGCAACACGA
1 TAAGACCATAGTTGAAAGAAATTATGGCATCACGA
22684930 CGTAAAATGA
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
89 1 0.01
90 95 0.92
91 5 0.05
92 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (90 bp):
TAAGACCATAGTTGAAAGAAATTATGGCATCACGATTCAAACGAGTAAGACCATAGCTGAAAGAC
GCTTTGGCATCATGAATCAGACGAA
Found at i:22684904 original size:45 final size:45
Alignment explanation
Indices: 22684715--22684913 Score: 178
Period size: 45 Copynumber: 4.4 Consensus size: 45
22684705 CAAAATTACG
* ** *
22684715 TAAGACCATAGTTGAAAGAAATTATGGCATCAT-A-TCAAAAAC-GA
1 TAAGACCATAGCTGAAAGATGTTATGGCATCATGATTC--TAACGGA
* * *
22684759 GTAAGA-CAGTAGCTGAAAGACGTTATGGCATCATGATTCTAATGAA
1 -TAAGACCA-TAGCTGAAAGATGTTATGGCATCATGATTCTAACGGA
* *
22684805 TAAGACCAGAGCTGAAAGATGTTATGGCATCACGATTCTAAC-GA
1 TAAGACCATAGCTGAAAGATGTTATGGCATCATGATTCTAACGGA
*
22684849 GTAAGACCATAGCTGAAAGATGCTT-TGGCATCATGAATC-AGACGGA
1 -TAAGACCATAGCTGAAAGATG-TTATGGCATCATGATTCTA-ACGGA
* *
22684895 TAAGTCCATAGTTGAAAGA
1 TAAGACCATAGCTGAAAGA
22684914 CACTATGGCA
Statistics
Matches: 129, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
44 4 0.03
45 115 0.89
46 8 0.06
47 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (45 bp):
TAAGACCATAGCTGAAAGATGTTATGGCATCATGATTCTAACGGA
Found at i:22684958 original size:46 final size:45
Alignment explanation
Indices: 22684907--22685014 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
22684897 AGTCCATAGT
22684907 TGAAAGACACTATGGCAAC-ACGACGTAAAATGAATAAGACCATGGA
1 TGAAAGACACTATGGCAACTAC-ACG-AAAATGAATAAGACCATGGA
* * * ** *
22684953 TGAAAGACACTATGACATCTACTCGGGAATGAATAAGACCATGGT
1 TGAAAGACACTATGGCAACTACACGAAAATGAATAAGACCATGGA
* *
22684998 TGAAAAACACCATGGCA
1 TGAAAGACACTATGGCA
22685015 TCCTTCAACC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
45 31 0.60
46 19 0.37
47 2 0.04
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.18
Consensus pattern (45 bp):
TGAAAGACACTATGGCAACTACACGAAAATGAATAAGACCATGGA
Found at i:22687107 original size:54 final size:54
Alignment explanation
Indices: 22687021--22687151 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
22687011 ACTGCATCAG
** *
22687021 GTTGTTACATGACTTGGCGACACGACCGTGTGACCCTAAGATACACAGACTCAA
1 GTTGTTACATGGTTTGGCGACACGACCGTGTGACCCTAAGATACAAAGACTCAA
* * * * * * *
22687075 GTTGTTACATGGTTTGGCTATAGGACCTTGTGACCCTGAGATACAAAGACTTAG
1 GTTGTTACATGGTTTGGCGACACGACCGTGTGACCCTAAGATACAAAGACTCAA
* *
22687129 GTTGTTACACGGTTTGGCCACAC
1 GTTGTTACATGGTTTGGCGACAC
22687152 AACTATGTCT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (54 bp):
GTTGTTACATGGTTTGGCGACACGACCGTGTGACCCTAAGATACAAAGACTCAA
Found at i:22688913 original size:12 final size:13
Alignment explanation
Indices: 22688876--22688915 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
22688866 ACATTATTAA
* *
22688876 AAACATGACACAA
1 AAACATGAAACAT
22688889 AAACATGAAACAT
1 AAACATGAAACAT
22688902 AAACAT-AAACAT
1 AAACATGAAACAT
22688914 AA
1 AA
22688916 TCTAATTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 8 0.32
13 17 0.68
ACGTcount: A:0.65, C:0.17, G:0.05, T:0.12
Consensus pattern (13 bp):
AAACATGAAACAT
Found at i:22695555 original size:4 final size:4
Alignment explanation
Indices: 22695542--22695574 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
22695532 CCTAAGTTAG
22695542 TATT TA-T TATT TATT TATT TATT TA-T TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TATT TAT
22695575 AATATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 6 0.22
4 21 0.78
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:22695562 original size:15 final size:15
Alignment explanation
Indices: 22695542--22695574 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
22695532 CCTAAGTTAG
22695542 TATTTA-TTATTTATT
1 TATTTATTTA-TTATT
22695557 TATTTATTTATTATT
1 TATTTATTTATTATT
22695572 TAT
1 TAT
22695575 AATATTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTTATTTATTATT
Found at i:22695583 original size:19 final size:19
Alignment explanation
Indices: 22695542--22695580 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22695532 CCTAAGTTAG
*
22695542 TATTTATTATTTATTTATT
1 TATTTATTATTTATATATT
22695561 TATTTATTATTTATAATATT
1 TATTTATTATTTAT-ATATT
22695581 ATTACAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TATTTATTATTTATATATT
Found at i:22696843 original size:25 final size:24
Alignment explanation
Indices: 22696734--22696847 Score: 99
Period size: 25 Copynumber: 4.7 Consensus size: 24
22696724 CATCCCAACC
22696734 CACAGCTCATGTGAGCATTTACTGT
1 CACAGCTC-TGTGAGCATTTACTGT
*
22696759 CACAGCTCTGTGAGCACTT--T-T
1 CACAGCTCTGTGAGCATTTACTGT
** *
22696780 CTACATATCTAGTGAGCATTTACAGT
1 C-ACAGCTCT-GTGAGCATTTACTGT
* * *
22696806 TATAACTCATGTGAGCATTTACTGT
1 CACAGCTC-TGTGAGCATTTACTGT
22696831 CACAGCTCGTGTGAGCA
1 CACAGCTC-TGTGAGCA
22696848 CCTTCCTGCA
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
21 2 0.03
22 7 0.10
23 9 0.13
24 10 0.14
25 39 0.57
26 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (24 bp):
CACAGCTCTGTGAGCATTTACTGT
Found at i:22697237 original size:16 final size:18
Alignment explanation
Indices: 22697216--22697251 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22697206 CATTCTTTGT
22697216 AGGTCA-TTGGAAG-TCA
1 AGGTCATTTGGAAGTTCA
22697232 AGGTCATTTGGAAGTTCA
1 AGGTCATTTGGAAGTTCA
22697250 AG
1 AG
22697252 TCAGAGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 7 0.39
18 5 0.28
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (18 bp):
AGGTCATTTGGAAGTTCA
Found at i:22702473 original size:14 final size:14
Alignment explanation
Indices: 22702450--22702479 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22702440 CTTGTGAATT
*
22702450 ATGTGCTTATGTGA
1 ATGTGATTATGTGA
22702464 ATGTGATTATGTGA
1 ATGTGATTATGTGA
22702478 AT
1 AT
22702480 TGGGATGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (14 bp):
ATGTGATTATGTGA
Found at i:22704585 original size:38 final size:38
Alignment explanation
Indices: 22704543--22704691 Score: 190
Period size: 38 Copynumber: 3.9 Consensus size: 38
22704533 AAAAGCATAA
* *
22704543 TGTTATTCGGGCTCTATGCTTAGCAGGCTTTATGCTGG
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTGTGCTGG
* * *
22704581 TGTTATTTGGGCTCTATGCCTAGCAGGCTTTGTGCCGA
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTGTGCTGG
* * * *
22704619 TGTTATTTGGGCACTGTGCCTAGTAGGCTTTGTGCTGG
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTGTGCTGG
** *
22704657 TGTTATTCGGGCTCTGCGACTAGCAGGCTTTGTGC
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTGTGC
22704692 CAGTGAATCA
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 96 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (38 bp):
TGTTATTCGGGCTCTATGCCTAGCAGGCTTTGTGCTGG
Found at i:22704669 original size:76 final size:76
Alignment explanation
Indices: 22704542--22704692 Score: 212
Period size: 76 Copynumber: 2.0 Consensus size: 76
22704532 TAAAAGCATA
* * * * *
22704542 ATGTTATTCGGGCTCTATGCTTAGCAGGCTTTATGCTGGTGTTATTTGGGCTCTATGCCTAGCAG
1 ATGTTATTCGGGCACTATGCCTAGCAGGCTTTATGCTGGTGTTATTCGGGCTCTACGACTAGCAG
22704607 GCTTTGTGCCG
66 GCTTTGTGCCG
* * * * *
22704618 ATGTTATTTGGGCACTGTGCCTAGTAGGCTTTGTGCTGGTGTTATTCGGGCTCTGCGACTAGCAG
1 ATGTTATTCGGGCACTATGCCTAGCAGGCTTTATGCTGGTGTTATTCGGGCTCTACGACTAGCAG
22704683 GCTTTGTGCC
66 GCTTTGTGCC
22704693 AGTGAATCAA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37
Consensus pattern (76 bp):
ATGTTATTCGGGCACTATGCCTAGCAGGCTTTATGCTGGTGTTATTCGGGCTCTACGACTAGCAG
GCTTTGTGCCG
Found at i:22715161 original size:31 final size:31
Alignment explanation
Indices: 22715126--22715194 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
22715116 TTTAAAAATG
*
22715126 GTCACTAAACTATTCGAAAGTTTTCATTTAA
1 GTCACTAAACAATTCGAAAGTTTTCATTTAA
* * *
22715157 GTCACTCAACAATTTGAAAGTTTTTATTTAA
1 GTCACTAAACAATTCGAAAGTTTTCATTTAA
22715188 GTCACTA
1 GTCACTA
22715195 GGTCTTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (31 bp):
GTCACTAAACAATTCGAAAGTTTTCATTTAA
Found at i:22721119 original size:7 final size:7
Alignment explanation
Indices: 22721107--22721132 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22721097 AGCAAAAAAA
22721107 TTCATAT
1 TTCATAT
22721114 TTCATAT
1 TTCATAT
22721121 TTCATAT
1 TTCATAT
22721128 TTCAT
1 TTCAT
22721133 TTTTGCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.15, G:0.00, T:0.58
Consensus pattern (7 bp):
TTCATAT
Found at i:22723850 original size:63 final size:63
Alignment explanation
Indices: 22723773--22723893 Score: 197
Period size: 63 Copynumber: 1.9 Consensus size: 63
22723763 CTGCAATAGT
* *
22723773 ACATTTGAAACATGAAAAGTTAGAACAAATTCTCTAACAAGTTCTCATCAGTAATATTAGAGC
1 ACATTTGAAACATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATCAGTAATATTAGAGC
* * *
22723836 ACATTTGAAGCATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATTAGTAGTATT
1 ACATTTGAAACATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATCAGTAATATT
22723894 CTCACATAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (63 bp):
ACATTTGAAACATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATCAGTAATATTAGAGC
Found at i:22725107 original size:9 final size:9
Alignment explanation
Indices: 22725066--22725107 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
22725056 AATAAATAAT
22725066 AAAGAGAACA
1 AAAGA-AACA
22725076 AAA-AAACA
1 AAAGAAACA
*
22725084 AAAGAAATA
1 AAAGAAACA
22725093 AAAGAAACA
1 AAAGAAACA
*
22725102 AGAGAA
1 AAAGAA
22725108 CTTTGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
8 7 0.25
9 18 0.64
10 3 0.11
ACGTcount: A:0.76, C:0.07, G:0.14, T:0.02
Consensus pattern (9 bp):
AAAGAAACA
Found at i:22732864 original size:6 final size:6
Alignment explanation
Indices: 22732853--22732879 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22732843 CTTAGTTCGG
22732853 TTGATA TTGATA TTGATA TTGATA TTG
1 TTGATA TTGATA TTGATA TTGATA TTG
22732880 TTATCAGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (6 bp):
TTGATA
Found at i:22738389 original size:19 final size:19
Alignment explanation
Indices: 22738365--22738404 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
22738355 TGAAATGCAT
22738365 GTATTGATGGGTGTAAAAC
1 GTATTGATGGGTGTAAAAC
22738384 GTATTGATGGGTGTAAAAC
1 GTATTGATGGGTGTAAAAC
22738403 GT
1 GT
22738405 GATGTACGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.33, T:0.33
Consensus pattern (19 bp):
GTATTGATGGGTGTAAAAC
Found at i:22741603 original size:38 final size:37
Alignment explanation
Indices: 22741555--22741637 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
22741545 TTTCAGTACG
* *
22741555 GTGGCATGCTTAAACGTACATTTAGTATAACAGTATCA
1 GTGGCATGCTT-AACATACATTCAGTATAACAGTATCA
* ** *
22741593 GTGGTATGCTTTGCATACATTCAGTATAACAGTATCG
1 GTGGCATGCTTAACATACATTCAGTATAACAGTATCA
22741630 GTGGCATG
1 GTGGCATG
22741638 TTTTTCATGC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 28 0.74
38 10 0.26
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (37 bp):
GTGGCATGCTTAACATACATTCAGTATAACAGTATCA
Found at i:22741612 original size:37 final size:37
Alignment explanation
Indices: 22741571--22741652 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
22741561 TGCTTAAACG
*
22741571 TACATTTAGTATAACAGTATCAGTGGTATGCTTTGCA
1 TACATTTAGTATAACAGTATCAGTGGCATGCTTTGCA
* * * *
22741608 TACATTCAGTATAACAGTATCGGTGGCATGTTTTTCA
1 TACATTTAGTATAACAGTATCAGTGGCATGCTTTGCA
*
22741645 TGCATTTA
1 TACATTTA
22741653 ATGAAAATAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (37 bp):
TACATTTAGTATAACAGTATCAGTGGCATGCTTTGCA
Found at i:22752379 original size:29 final size:26
Alignment explanation
Indices: 22752322--22752386 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
22752312 CTCAATACCA
* * *
22752322 ACCCAACACCTAAATAAAAACCAATT
1 ACCCAAAACCTAAAAAAAAACCAAAT
22752348 ACCCAAAACCTAAAAAAATAGACCCAAAT
1 ACCCAAAACCTAAAAAAA-A-A-CCAAAT
22752377 ACCCAAAACC
1 ACCCAAAACC
22752387 CCAACAAGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 16 0.48
27 1 0.03
28 1 0.03
29 15 0.45
ACGTcount: A:0.55, C:0.32, G:0.02, T:0.11
Consensus pattern (26 bp):
ACCCAAAACCTAAAAAAAAACCAAAT
Found at i:22757058 original size:19 final size:19
Alignment explanation
Indices: 22757010--22757049 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
22757000 CATTAGAGCC
22757010 GTTTTAAGGGAGTTGTGAA
1 GTTTTAAGGGAGTTGTGAA
22757029 GTTTTAAGGGAGTTGTGAA
1 GTTTTAAGGGAGTTGTGAA
22757048 GT
1 GT
22757050 CTTTCGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (19 bp):
GTTTTAAGGGAGTTGTGAA
Found at i:22773638 original size:50 final size:50
Alignment explanation
Indices: 22773533--22773657 Score: 126
Period size: 50 Copynumber: 2.5 Consensus size: 50
22773523 TTATTGAGGT
* * *
22773533 TATGAGAGGTCCCACTTAAGACCATGTCTGGGACATAGCATTGCTACCGA
1 TATGAGAGGTCCCACATAAGACCATGCCTGGGACATAGCATGGCTACCGA
* * * * **
22773583 GATGAGAGGTCCCCCATAATACCATGCCTGGGACATGGCATGGGC-ATTGA
1 TATGAGAGGTCCCACATAAGACCATGCCTGGGACATAGCAT-GGCTACCGA
** *
22773633 TATGAGAACTCCCACGTAAGACCAT
1 TATGAGAGGTCCCACATAAGACCAT
22773658 ATCTGGGAAT
Statistics
Matches: 59, Mismatches: 15, Indels: 2
0.78 0.20 0.03
Matches are distributed among these distances:
50 57 0.97
51 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (50 bp):
TATGAGAGGTCCCACATAAGACCATGCCTGGGACATAGCATGGCTACCGA
Found at i:22775997 original size:20 final size:20
Alignment explanation
Indices: 22775972--22776010 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22775962 TGAGTTATTT
22775972 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
22775992 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
22776011 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:22777733 original size:50 final size:50
Alignment explanation
Indices: 22777635--22777733 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
22777625 TATTGAGGTT
* * * *
22777635 ATGAGAGGTCCCACTTAAGACCATGTCTAGGACATAGCGTTGGTACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAG
* * *
22777685 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGA
22777734 TATAAGAACT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.19
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAG
Found at i:22777753 original size:50 final size:49
Alignment explanation
Indices: 22777699--22777824 Score: 130
Period size: 49 Copynumber: 2.6 Consensus size: 49
22777689 GAGGTCCCCC
22777699 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATAAG-AAC-TCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCA--G-TATAAGAAACATCCCAT
* * * * * ** *
22777749 GTAAGACTATATTTGGGATATGACATTTGCAGTATAGGAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCAGTATAAGAAACATCCCAT
*
22777798 GTAAGACCTTGTCTGGGACATGGCATG
1 GTAAGACCATGTCTGGGACATGGCATG
22777825 TTATTATCAG
Statistics
Matches: 59, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
47 5 0.08
48 4 0.07
49 26 0.44
50 24 0.41
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCAGTATAAGAAACATCCCAT
Found at i:22778050 original size:20 final size:20
Alignment explanation
Indices: 22778025--22778063 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22778015 TGAGTTATTT
22778025 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
22778045 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
22778064 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:22785216 original size:20 final size:20
Alignment explanation
Indices: 22785191--22785236 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
22785181 TGAGTTATTT
*
22785191 AAGTAAGCAAGTAAGTAAAA
1 AAGTAAGAAAGTAAGTAAAA
*
22785211 AAGTAAGAAAGTAAGTAAAG
1 AAGTAAGAAAGTAAGTAAAA
22785231 AAGTAA
1 AAGTAA
22785237 AGATCATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.22, T:0.15
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAA
Found at i:22786634 original size:20 final size:19
Alignment explanation
Indices: 22786611--22786657 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
22786601 ATTTAGCCAC
*
22786611 TTTTATTTTTATTTTAATAT
1 TTTTATTTTTAATTTAAT-T
*
22786631 TTTTGTTTTTAATTTAATT
1 TTTTATTTTTAATTTAATT
22786650 TTTATATT
1 TTT-TATT
22786658 CTAATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTTATTTTTAATTTAATT
Found at i:22786683 original size:32 final size:32
Alignment explanation
Indices: 22786615--22786683 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
22786605 AGCCACTTTT
*
22786615 ATTTTTATTTTAATATTTTTGTTTTTAATTTA
1 ATTTTTATTTTAATATTTTTGTGTTTAATTTA
* *
22786647 ATTTTTATATTCTAATCTTTTT-TGTTT-ATTTG
1 ATTTTTAT-TT-TAATATTTTTGTGTTTAATTTA
22786679 ATTTT
1 ATTTT
22786684 GACAGGTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 17 0.53
33 6 0.19
34 9 0.28
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.71
Consensus pattern (32 bp):
ATTTTTATTTTAATATTTTTGTGTTTAATTTA
Found at i:22796530 original size:42 final size:42
Alignment explanation
Indices: 22796471--22796553 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
22796461 ATAAACGTAT
22796471 TTTAAATAAGAAGGTAATACCTTGAGTTCTAATTTAGGTGGG
1 TTTAAATAAGAAGGTAATACCTTGAGTTCTAATTTAGGTGGG
22796513 TTTAAATAAGAAGGTAATACCTTGAGTTCTAATTTAGGTGG
1 TTTAAATAAGAAGGTAATACCTTGAGTTCTAATTTAGGTGG
22796554 CTCCTCGATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (42 bp):
TTTAAATAAGAAGGTAATACCTTGAGTTCTAATTTAGGTGGG
Found at i:22806112 original size:15 final size:16
Alignment explanation
Indices: 22806083--22806112 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22806073 TTGGTTAGTA
22806083 GACTGGAATCAGAGAG
1 GACTGGAATCAGAGAG
22806099 GACTGGAA-CAGAGA
1 GACTGGAATCAGAGA
22806113 TGTTTGATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.13, G:0.37, T:0.10
Consensus pattern (16 bp):
GACTGGAATCAGAGAG
Found at i:22810006 original size:15 final size:16
Alignment explanation
Indices: 22809977--22810012 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
22809967 AGCATAATAT
*
22809977 ATTATTAATTAATAAA
1 ATTATAAATTAATAAA
22809993 ATTATAAATT-ATAAA
1 ATTATAAATTAATAAA
22810008 ATTAT
1 ATTAT
22810013 TGTACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTATAAATTAATAAA
Found at i:22810590 original size:23 final size:22
Alignment explanation
Indices: 22810547--22810599 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
22810537 ATCCATAATA
22810547 AATTATATTTATTATTATAAATT
1 AATTATATTTA-TATTATAAATT
22810570 AATTATCATTTA-ATTAGTAAA-T
1 AATTAT-ATTTATATTA-TAAATT
*
22810592 AGTTATAT
1 AATTATAT
22810600 AGCAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 10 0.37
23 10 0.37
24 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
AATTATATTTATATTATAAATT
Found at i:22811299 original size:16 final size:18
Alignment explanation
Indices: 22811278--22811310 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22811268 TAGACCCACG
22811278 AAAAAA-AT-TATTTTTT
1 AAAAAATATATATTTTTT
22811294 AAAAAATATATATTTTT
1 AAAAAATATATATTTTT
22811311 ATTATCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAAAAATATATATTTTTT
Found at i:22823752 original size:35 final size:33
Alignment explanation
Indices: 22823706--22823787 Score: 103
Period size: 35 Copynumber: 2.5 Consensus size: 33
22823696 GCTTACCCCG
* *
22823706 TGTTTATTGTCCCAGTGGACTTTATCTCTGTTCTA
1 TGTTTATTGTCCCAATAGAC--TATCTCTGTTCTA
*
22823741 TGTTTATTGTCCTAATAGACTATCTCTGTTCTA
1 TGTTTATTGTCCCAATAGACTATCTCTGTTCTA
*
22823774 TG-TTACTGTCCCAA
1 TGTTTATTGTCCCAA
22823788 CGGACTATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
32 10 0.24
33 15 0.36
35 17 0.40
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (33 bp):
TGTTTATTGTCCCAATAGACTATCTCTGTTCTA
Found at i:22823794 original size:32 final size:33
Alignment explanation
Indices: 22823728--22823795 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 33
22823718 CAGTGGACTT
* * *
22823728 TATCTCTGTTCTATGTTTATTGTCCTAATAGAC
1 TATCTCTGTTCTATGTTTACTGTCCCAACAGAC
*
22823761 TATCTCTGTTCTATG-TTACTGTCCCAACGGAC
1 TATCTCTGTTCTATGTTTACTGTCCCAACAGAC
22823793 TAT
1 TAT
22823796 TTCTATAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (33 bp):
TATCTCTGTTCTATGTTTACTGTCCCAACAGAC
Found at i:22825826 original size:16 final size:16
Alignment explanation
Indices: 22825805--22825852 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
22825795 CGTTTGGTTC
22825805 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
22825821 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
22825837 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
22825853 ACTTAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.38, C:0.06, G:0.29, T:0.27
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:22825892 original size:44 final size:44
Alignment explanation
Indices: 22825842--22825933 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
22825832 ATAGAGCTGT
22825842 AATGGAATAGAACT-TAATAATAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAT-ATTC-ATGTGTTTGGTTGAATGG
* * *
22825886 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTTAATGG
1 AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
22825930 AATG
1 AATG
22825934 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 36 0.84
45 6 0.14
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
Found at i:22826178 original size:55 final size:55
Alignment explanation
Indices: 22826046--22826167 Score: 140
Period size: 55 Copynumber: 2.2 Consensus size: 55
22826036 GATTATTAAT
* * *
22826046 ATAAATAATAAATAATTTAATCATATT-TTAACATAATTATTATTAAATATAATTTA
1 ATAAA-AATATATAATTTAATAAAATTCTTAACATAATTATTATT-AATATAATTTA
* *
22826102 ATAAAAATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAATTTA
1 ATAAAAATATATAATTTAATAAAATTCTTAACATAATTATTATTAATAT-AATTTA
* *
22826157 CTAAAATTATA
1 ATAAAAATATA
22826168 ATATATAATA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
54 4 0.07
55 33 0.58
56 20 0.35
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (55 bp):
ATAAAAATATATAATTTAATAAAATTCTTAACATAATTATTATTAATATAATTTA
Found at i:22827536 original size:38 final size:39
Alignment explanation
Indices: 22827482--22827559 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
22827472 AGTTGAGGAA
*
22827482 AGGGAAAAAAAAAGCAATTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAAAAGCAACTACTTTACCAAAATGGATCCC
*
22827521 AGGG-AAAAAAGAGCAACTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAAAAGCAACTACTTTACCAAAATGGATCCC
22827559 A
1 A
22827560 ATACAAGAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 33 0.89
39 4 0.11
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (39 bp):
AGGGAAAAAAAAAGCAACTACTTTACCAAAATGGATCCC
Found at i:22830953 original size:9 final size:8
Alignment explanation
Indices: 22830919--22830970 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 8
22830909 AAAATTTAAA
22830919 AATATTTT
1 AATATTTT
*
22830927 TATATTTT
1 AATATTTT
*
22830935 TATACTTTT
1 AATA-TTTT
22830944 AATACTTTT
1 AATA-TTTT
22830953 AATAATTTT
1 AAT-ATTTT
22830962 AAT-TTTT
1 AATATTTT
22830969 AA
1 AA
22830971 AAATAGATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
7 6 0.15
8 11 0.28
9 22 0.55
10 1 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (8 bp):
AATATTTT
Found at i:22830953 original size:25 final size:25
Alignment explanation
Indices: 22830919--22830970 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
22830909 AAAATTTAAA
* *
22830919 AATA-TTTTTATATTTTTATACTTTT
1 AATACTTTTAATAATTTTA-ACTTTT
*
22830944 AATACTTTTAATAATTTTAATTTTT
1 AATACTTTTAATAATTTTAACTTTT
22830969 AA
1 AA
22830971 AAATAGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (25 bp):
AATACTTTTAATAATTTTAACTTTT
Found at i:22831832 original size:17 final size:17
Alignment explanation
Indices: 22831793--22831831 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
22831783 TTTTTTATAA
22831793 AATTTTATATCTTTTAC
1 AATTTTATATCTTTTAC
22831810 AATTTTATAT-TTTTAC
1 AATTTTATATCTTTTAC
*
22831826 GATTTT
1 AATTTT
22831832 TTATAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (17 bp):
AATTTTATATCTTTTAC
Found at i:22831886 original size:24 final size:24
Alignment explanation
Indices: 22831853--22831905 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
22831843 TTACAACTGT
* *
22831853 TATAATTTTTTATGATTTTTATTTC
1 TATAGTTTTCTAT-ATTTTTATTTC
*
22831878 TATAGTTTTCTATATTTTTATTTT
1 TATAGTTTTCTATATTTTTATTTC
22831902 TATA
1 TATA
22831906 ATATTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (24 bp):
TATAGTTTTCTATATTTTTATTTC
Found at i:22831919 original size:25 final size:24
Alignment explanation
Indices: 22831853--22831919 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
22831843 TTACAACTGT
* *
22831853 TATAATTTTTTATGATTTTTATTTC
1 TATAATTTTATA-AATTTTTATTTC
* * * *
22831878 TATAGTTTTCTATATTTTTATTTT
1 TATAATTTTATAAATTTTTATTTC
22831902 TATAATATTTATAAATTT
1 TATAAT-TTTATAAATTT
22831920 AAAAAATATT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (24 bp):
TATAATTTTATAAATTTTTATTTC
Found at i:22831991 original size:19 final size:18
Alignment explanation
Indices: 22831941--22832004 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 18
22831931 TTATTTTCTG
*
22831941 TATTTTTAT-ATTCTTAA
1 TATTTTTATAATTTTTAA
*
22831958 TATTTTGTA-ATTTTTTAA
1 TATTTT-TATAATTTTTAA
*
22831976 TAATTTTTATAATTTTTAT
1 T-ATTTTTATAATTTTTAA
22831995 TGATTTTTAT
1 T-ATTTTTAT
22832005 TTTTATCACT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 6 0.16
18 11 0.29
19 21 0.55
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (18 bp):
TATTTTTATAATTTTTAA
Found at i:22835634 original size:17 final size:17
Alignment explanation
Indices: 22835612--22835646 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
22835602 TTAGGGAGGC
22835612 TCTTAGGGTTTCTGTTT
1 TCTTAGGGTTTCTGTTT
22835629 TCTTAGGGTTTCTGTTT
1 TCTTAGGGTTTCTGTTT
22835646 T
1 T
22835647 TTTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.11, G:0.23, T:0.60
Consensus pattern (17 bp):
TCTTAGGGTTTCTGTTT
Found at i:22836268 original size:44 final size:44
Alignment explanation
Indices: 22836220--22836333 Score: 219
Period size: 44 Copynumber: 2.6 Consensus size: 44
22836210 ACCAGTATGG
22836220 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
*
22836264 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
22836308 GAAGACAAGATCTGCTTTCTTCGATC
1 GAAGACAAGATCTGCTTTCTTCGATC
22836334 GATTCCACTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
Found at i:22836472 original size:44 final size:44
Alignment explanation
Indices: 22836411--22836621 Score: 160
Period size: 44 Copynumber: 4.8 Consensus size: 44
22836401 AAAATCTACC
* *
22836411 ATCTTCGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * *
22836455 ATATTCAATCTATTCCACTGCTGCCCAGTGAGAT-AGA-AT-TA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * * **
22836496 CTGGCTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCC
1 AT--CTTCAATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTA
*
22836543 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * ** *
22836587 ATTTTCAATCTATTCCACTGTTGCCCAGGGAGATA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATA
22836622 GAATTATTGG
Statistics
Matches: 123, Mismatches: 36, Indels: 16
0.70 0.21 0.09
Matches are distributed among these distances:
41 3 0.02
42 2 0.02
43 19 0.15
44 76 0.62
45 20 0.16
46 2 0.02
47 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
Found at i:22836522 original size:132 final size:132
Alignment explanation
Indices: 22836348--22836677 Score: 570
Period size: 132 Copynumber: 2.5 Consensus size: 132
22836338 CCACTGTCGA
* * * * *
22836348 CAGGGAGTTAGAATTACTGGCTTCAATATACTCCACTATAACCTCAGAGAGGTAAAATCTACCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
*
22836413 CTTCGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTG
66 CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTG
22836478 CC
131 CC
*
22836480 CAGTGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* *
22836545 CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGTTG
66 CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTG
22836610 CC
131 CC
*
22836612 CAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
22836677 C
66 C
22836678 AACCTGCTCC
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 187 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTG
CC
Done.