Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 83 of 172
Found at i:23737801 original size:51 final size:50
Alignment explanation
Indices: 23737712--23737890 Score: 166
Period size: 51 Copynumber: 3.5 Consensus size: 50
23737702 AAAGGTCGCA
* * * *
23737712 TGTGTAGTACTATGTACAGACTACT--ATGCGTACCGGATAGCTTCGATCATG
1 TGTGTAGTACTATGTGCAGGCTACTACATGAGT--CGGATAG-TTTGATCATG
* * *
23737763 TGTGTAGTACTATGTGCAGGCTACTACATGTGTTGGATA-TTAATGGTCATG
1 TGTGTAGTACTATGTGCAGGCTACTACATGAGTCGGATAGTT--TGATCATG
* ** * * *
23737814 TGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACATGAGTCGGATAGTTTGATCATG
*
23737864 TGTGTAGTACTATGTGAAGGCTACTAC
1 TGTGTAGTACTATGTGCAGGCTACTAC
23737891 GTGTATCGAA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
49 2 0.02
50 32 0.30
51 66 0.62
52 2 0.02
53 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACATGAGTCGGATAGTTTGATCATG
Found at i:23737925 original size:101 final size:100
Alignment explanation
Indices: 23737657--23737932 Score: 263
Period size: 101 Copynumber: 2.7 Consensus size: 100
23737647 AAAGTGATGG
* * * * *
23737657 TCACGTGTGTAGTACAATGTGTAGGCTACTACGTGTACCAGAACGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGT--CATGTGTGGT
* * * * *
23737720 ACTATGTACAGACTACTATGCGTACCGGATAGCTTCGA
63 ACTATGTGCAGACTACTACGCGAACCGAAAAGCTTCGA
* * * * * *
23737758 TCATGTGTGTAGTACTATGTGCAGGCTACTACATGTGTTGGAT-ATTAATGGTCATGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGGTCATGTGTG--GT
* * *
23737822 ACTATGTGCAGGCTACTACGTGAACCGAAAAG-TTTGA
63 ACTATGTGCAGACTACTACGCGAACCGAAAAGCTTCGA
* *
23737859 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTCAATCGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTC-AT-GTGTGGTA
23737924 CTATGTGCA
64 CTATGTGCA
23737933 AACCACCAAA
Statistics
Matches: 141, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
99 1 0.01
100 9 0.06
101 94 0.67
102 33 0.23
103 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCATGTGTGGTACT
ATGTGCAGACTACTACGCGAACCGAAAAGCTTCGA
Found at i:23740706 original size:19 final size:19
Alignment explanation
Indices: 23740682--23740718 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
23740672 CATATTATTA
23740682 TTAAACTTAATTAATTAAC
1 TTAAACTTAATTAATTAAC
23740701 TTAAACTTAATTAATTAA
1 TTAAACTTAATTAATTAA
23740719 ACCTTAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAAACTTAATTAATTAAC
Found at i:23740712 original size:15 final size:15
Alignment explanation
Indices: 23740692--23740726 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
23740682 TTAAACTTAA
23740692 TTAATTAACTTAAA-C
1 TTAATTAA-TTAAACC
23740707 TTAATTAATTAAACC
1 TTAATTAATTAAACC
23740722 TTAAT
1 TTAAT
23740727 CATCAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (15 bp):
TTAATTAATTAAACC
Found at i:23741266 original size:17 final size:17
Alignment explanation
Indices: 23741244--23741276 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23741234 TTTGATTAAC
23741244 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
23741261 TAAATTATTTTCTCAA
1 TAAATTAATTTCTCAA
23741277 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:23743525 original size:11 final size:11
Alignment explanation
Indices: 23743509--23743533 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23743499 AATATAAAAT
23743509 AAAGGAGAGAA
1 AAAGGAGAGAA
23743520 AAAGGAGAGAA
1 AAAGGAGAGAA
23743531 AAA
1 AAA
23743534 TTTTACCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (11 bp):
AAAGGAGAGAA
Found at i:23745153 original size:110 final size:109
Alignment explanation
Indices: 23744946--23745235 Score: 436
Period size: 110 Copynumber: 2.7 Consensus size: 109
23744936 AAGGAAAATT
* * * * *
23744946 TTTCTAAATAAGGCAATGTTTAGCTTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTT
*
23745011 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCTAAATATCCTTTCAAAAA
* *
23745055 TTTCAAAATAAGGCAATGTTTTGCAATTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTCAAAATAAGGCAATGTTTTGC-ATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTT
* * * *
23745120 TCGATTTTTCTCATTCAACTAAATGGCTTAATATCCTTTTAAAAA
65 TCGATTTTTCTCATTCAACCAAATAGCTAAATATCCTTTCAAAAA
* * *
23745165 TTTTAAAATAAGGCATTGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTT
23745230 CGATTT
66 CGATTT
23745236 CTCGTTTAAC
Statistics
Matches: 163, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
109 66 0.40
110 97 0.60
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTT
CGATTTTTCTCATTCAACCAAATAGCTAAATATCCTTTCAAAAA
Found at i:23749501 original size:30 final size:30
Alignment explanation
Indices: 23749467--23749528 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
23749457 ATGGCATGTC
23749467 ATGAAAACAGCAGCCGCAAAGAATGCAATG
1 ATGAAAACAGCAGCCGCAAAGAATGCAATG
23749497 ATGAAAACAGCAGCCGCAAAGAATGCAATG
1 ATGAAAACAGCAGCCGCAAAGAATGCAATG
23749527 AT
1 AT
23749529 CATTCAAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.11
Consensus pattern (30 bp):
ATGAAAACAGCAGCCGCAAAGAATGCAATG
Found at i:23752952 original size:18 final size:18
Alignment explanation
Indices: 23752929--23752965 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
23752919 ATAACACCAC
23752929 ATCACATCTATTCAAAAT
1 ATCACATCTATTCAAAAT
23752947 ATCACATCTATTCAAAAT
1 ATCACATCTATTCAAAAT
23752965 A
1 A
23752966 GCCATGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (18 bp):
ATCACATCTATTCAAAAT
Found at i:23757974 original size:51 final size:51
Alignment explanation
Indices: 23757785--23758035 Score: 296
Period size: 50 Copynumber: 5.0 Consensus size: 51
23757775 GTAAAAGTGA
**
23757785 AAGTGAT-GGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-G
1 AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
* * *
23757834 AAATGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGG
1 AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
* * *
23757885 AA-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGG
1 AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
* * * * *
23757935 ATAGT-TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG
1 A-AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
* * * *
23757986 ATGGTAAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 A-AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
23758036 AACATCATTG
Statistics
Matches: 174, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
49 6 0.03
50 83 0.48
51 83 0.48
52 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (51 bp):
AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
Found at i:23758030 original size:26 final size:26
Alignment explanation
Indices: 23757950--23758030 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
23757940 TTCGATCACG
23757950 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
23757976 CGTGTA-T-CGGATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
23758001 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
23758027 TGTG
1 TGTG
23758031 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:23758088 original size:45 final size:45
Alignment explanation
Indices: 23758032--23758126 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
23758022 TACTATGTGA
* * *
23758032 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
23758077 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
23758122 ACCGA
1 ACCGA
23758127 GTATCAGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:23764158 original size:30 final size:30
Alignment explanation
Indices: 23764124--23764195 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
23764114 AATGTTTACT
23764124 CTTGGTAGGAATAACACTAGTATTGTCACA
1 CTTGGTAGGAATAACACTAGTATTGTCACA
23764154 CTTGGTAGGAATAACACTAGTATTGTCACA
1 CTTGGTAGGAATAACACTAGTATTGTCACA
23764184 CTTGGTAGGAAT
1 CTTGGTAGGAAT
23764196 GATATCTATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (30 bp):
CTTGGTAGGAATAACACTAGTATTGTCACA
Found at i:23772949 original size:3 final size:3
Alignment explanation
Indices: 23772943--23772975 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
23772933 TCATCATTGT
*
23772943 TCA TCA TCA TTA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
23772976 CAAGAATCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:23774426 original size:58 final size:59
Alignment explanation
Indices: 23774328--23774572 Score: 174
Period size: 58 Copynumber: 4.1 Consensus size: 59
23774318 TTATCGAAGA
* * * * * *
23774328 ATGAAAAGGGAGAGCTTCGGCTATCGAA-TACGGAAGGGGATAACTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCAGCTATCGAATTATGAAAAGGGATAACTTTGGCCATCGATT
* ** * * * **
23774386 ATGAAAAGGAATAGCTTCAGCTATC-AATTATGAAAAGGGAT-GGTGATGACCATCAACA
1 ATGAAAAGGGATAGCTTCAGCTATCGAATTATGAAAAGGGATAACT-TTGGCCATCGATT
* * * * * ** *
23774444 ATGAAAAGGGAT-GGTGACAACCATCGAACTATGAAAAGGGATGTCTTTGGCTATCGATCT
1 ATGAAAAGGGATAGCT-TCAGCTATCGAATTATGAAAAGGGATAACTTTGGCCATCGAT-T
* * * *
23774504 ATGAAATGGGATAGCTTCGGCTATCAAATTATGAAAAAGGGATAACTTCGGCCATCGAATT
1 ATGAAAAGGGATAGCTTCAGCTATCGAATTATG-AAAAGGGATAACTTTGGCCATCG-ATT
*
23774565 ACGAAAAG
1 ATGAAAAG
23774573 AGATGTGTCA
Statistics
Matches: 136, Mismatches: 42, Indels: 15
0.70 0.22 0.08
Matches are distributed among these distances:
57 5 0.04
58 56 0.41
59 22 0.16
60 23 0.17
61 28 0.21
62 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (59 bp):
ATGAAAAGGGATAGCTTCAGCTATCGAATTATGAAAAGGGATAACTTTGGCCATCGATT
Found at i:23774480 original size:30 final size:29
Alignment explanation
Indices: 23774408--23774486 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
23774398 AGCTTCAGCT
* **
23774408 ATCAATTATGAAAAGGGATGGTGATGACC
1 ATCAACTATGAAAAGGGATGGTGACAACC
*
23774437 ATCAACAATGAAAAGGGATGGTGACAACC
1 ATCAACTATGAAAAGGGATGGTGACAACC
23774466 ATCGAACTATGAAAAGGGATG
1 ATC-AACTATGAAAAGGGATG
23774487 TCTTTGGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 28 0.64
30 16 0.36
ACGTcount: A:0.42, C:0.13, G:0.27, T:0.19
Consensus pattern (29 bp):
ATCAACTATGAAAAGGGATGGTGACAACC
Found at i:23774500 original size:30 final size:30
Alignment explanation
Indices: 23774466--23774578 Score: 102
Period size: 30 Copynumber: 3.7 Consensus size: 30
23774456 GGTGACAACC
*
23774466 ATCGAACTATGAAAAGGGATGTCTTTGGCT
1 ATCGAACTATGAAAAGGGATGTCTTCGGCT
* *
23774496 ATCGATCTATGAAATGGGATAG-CTTCGGCT
1 ATCGAACTATGAAAAGGGAT-GTCTTCGGCT
* * ** *
23774526 ATCAAATTATGAAAAAGGGATAACTTCGGCC
1 ATCGAACTATG-AAAAGGGATGTCTTCGGCT
* * *
23774557 ATCGAATTACGAAAAGAGATGT
1 ATCGAACTATGAAAAGGGATGT
23774579 GTCAACCATC
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
30 41 0.62
31 25 0.38
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (30 bp):
ATCGAACTATGAAAAGGGATGTCTTCGGCT
Found at i:23777127 original size:50 final size:50
Alignment explanation
Indices: 23777068--23777407 Score: 317
Period size: 51 Copynumber: 6.7 Consensus size: 50
23777058 TATCATTCGA
* *
23777068 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTATGG
* * ** * *
23777118 TTCACGTAGTAGCCTTTAGGTAGTACTACACACGTGATCAAGTTTTACGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTATGG
* * *
23777168 TTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTATGG
* * * * * *** *
23777219 TACACATACTAGTCTTCACTTAGTACTACACATGTGACCATCATTTATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTAT-GG
* * *
23777270 TTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-TGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTATGG
* * * * * *
23777321 TACACATTGTAGCCTTCACTTGGTACTACACATGTGACC-AGTATTTATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGT-TTTAT-GG
* *
23777372 TACACGTAGTAGCCTTCGCACAGTACTACACACGTG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTG
23777408 TTCATCGATA
Statistics
Matches: 232, Mismatches: 49, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.00
49 7 0.03
50 80 0.34
51 136 0.59
52 6 0.03
53 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (50 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTATGG
Found at i:23777302 original size:102 final size:100
Alignment explanation
Indices: 23777064--23777407 Score: 415
Period size: 102 Copynumber: 3.4 Consensus size: 100
23777054 CTTTTATCAT
* * * * * *
23777064 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTATAGTTCACGTAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTT-TGGTACACATAGT
* ** * *
23777128 AGCCTTTAGGTAGTACTACACACGTGATCA-AGTTT-
65 AGCCTTCACTTAGTACTACACATGTGACCATA-TTTA
* * * * *
23777163 TACGGTTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAC
1 T-CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-GGTACACATAG
*
23777228 TAGTCTTCACTTAGTACTACACATGTGACCATCATTTA
64 TAGCCTTCACTTAGTACTACACATGTGACCAT-ATTTA
* *
23777266 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTTGGTACACATTGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT-TTGGTACACATAGT
*
23777331 AGCCTTCACTTGGTACTACACATGTGACCAGTATTTA
65 AGCCTTCACTTAGTACTACACATGTGACCA-TATTTA
*
23777368 TCGATACACGTAGTAGCCTTCGCACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
23777408 TTCATCGATA
Statistics
Matches: 213, Mismatches: 24, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
99 1 0.00
100 39 0.18
101 38 0.18
102 130 0.61
103 5 0.02
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (100 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTGGTACACATAGTA
GCCTTCACTTAGTACTACACATGTGACCATATTTA
Found at i:23777426 original size:153 final size:150
Alignment explanation
Indices: 23777063--23777426 Score: 355
Period size: 153 Copynumber: 2.4 Consensus size: 150
23777053 ACTTTTATCA
* *
23777063 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AG-T-TTTATAGTTCACGT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATCGATATCT-TA-TTCACGT
* *** * *
23777125 AGTAGCCTTTAGGTAGTACTACACACGTGATCAAGTTTTACGGTTCACATAGTAGCCTTCACATA
64 AGTAGCCTTCACACAGTACTACACACGTGACCAAGTTTTA-GGTACACATAGTAGCCTTCACATA
*
23777190 GTACTACACACGTGACCAAAGCTT
128 GTACTACACACGTGACC-AAGATT
* * * * * * * *
23777214 TTCGGTACACATACTAGTCTTCACTTAGTACTACACATGTGACCATC-ATTTATC-GATTCACGT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATCGA--TATCTTATTCACGT
* *
23777277 AGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTT-GGTACACATTGTAGCCTTCACT
64 AGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TT-TTAGGTACACATAGTAGCCTTCACA
* *
23777341 TGGTACTACACATGTGACC-AGTATT
126 TAGTACTACACACGTGACCAAG-ATT
* * * *
23777366 TATCGATACACGTAGTAGCCTTCGCACAGTACTACACACGTGTTCATCGATACCTTATTCA
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATCGATATCTTATTCA
23777427 AATCTTTACC
Statistics
Matches: 168, Mismatches: 33, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
151 40 0.24
152 40 0.24
153 81 0.48
154 4 0.02
155 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (150 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATCGATATCTTATTCACGTAG
TAGCCTTCACACAGTACTACACACGTGACCAAGTTTTAGGTACACATAGTAGCCTTCACATAGTA
CTACACACGTGACCAAGATT
Found at i:23777929 original size:30 final size:31
Alignment explanation
Indices: 23777876--23777934 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
23777866 GCTTCGACTC
**
23777876 AACTTTTGTCAAAATTATGATTTTGTCCCTA
1 AACTTTTGTCAAAATTACAATTTTGTCCCTA
*
23777907 AACTTTTG-CATAATTACAATTTTGTCCC
1 AACTTTTGTCAAAATTACAATTTTGTCCC
23777935 CAAGCTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (31 bp):
AACTTTTGTCAAAATTACAATTTTGTCCCTA
Found at i:23780198 original size:51 final size:50
Alignment explanation
Indices: 23780018--23780362 Score: 293
Period size: 51 Copynumber: 6.8 Consensus size: 50
23780008 GCTTTTATCA
* * * *
23780018 TTCGATACACGTAGTAGCCTTCACATGGTACTACACACGTGATCAAG-TT
1 TTCGATTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* * * * *
23780067 TTACGATTCACTTAGTAGCATTCACATAGAACTACACACATGATCAAG-TT
1 TT-CGATTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
*
23780117 TTACGGTTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGATTCACATAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * * * * *
23780169 TTCGGTACATATAGTAACCTTCACTTAGTACTACACATGTGACC-ATCATT
1 TTCGATTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* * *
23780219 TATCAATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGCTT
1 T-TCGATTCACATAGTAGCCTTCACATAGTACTACACACGTGAC-CAAGCTT
* * * * * ***
23780271 CTCGATACACATTGTAGCCTTCAC-TAGGTGCTACACATGTGACCATTATT
1 TTCGATTCACATAGTAGCCTTCACATA-GTACTACACACGTGACCAAGCTT
* * * * *
23780321 TATCGATACACGTAGTAGCCTTCAAACAGTACTATACACGTG
1 T-TCGATTCACATAGTAGCCTTCACATAGTACTACACACGTG
23780363 TTCATCGATA
Statistics
Matches: 239, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
49 4 0.02
50 88 0.37
51 138 0.58
52 7 0.03
53 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (50 bp):
TTCGATTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
Found at i:23780243 original size:102 final size:101
Alignment explanation
Indices: 23780019--23780362 Score: 372
Period size: 102 Copynumber: 3.4 Consensus size: 101
23780009 CTTTTATCAT
* * * *
23780019 TCGATACACGTAGTAGCCTTCACATGGTACTACACACGTGATC-AAG-TTTTACGATTCACT-TA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGATACA-TATA
* * ** * ***
23780081 GTAGCATTCACATAGAACTACACACATGATCAAGTTTTA
64 GTAGCCTTCAC-TAGTACTACACATGTGACCATCATTTA
* * *
23780120 -CGGTTCACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACATATAGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGATACATATAGT
*
23780184 AACCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCAC-TAGTACTACACATGTGACCATCATTTA
* * * * *
23780221 TCAATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACTAAAGCTTCTCGATACACATTGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGATACATATAGT
* *
23780286 AGCCTTCACTAGGTGCTACACATGTGACCATTATTTA
66 AGCCTTCACTA-GTACTACACATGTGACCATCATTTA
* * * *
23780323 TCGATACACGTAGTAGCCTTCAAACAGTACTATACACGTG
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTG
23780363 TTCATCGATA
Statistics
Matches: 205, Mismatches: 33, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
100 38 0.19
101 41 0.20
102 126 0.61
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (101 bp):
TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGATACATATAGT
AGCCTTCACTAGTACTACACATGTGACCATCATTTA
Found at i:23792583 original size:15 final size:15
Alignment explanation
Indices: 23792560--23792589 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23792550 GAGGATCTCC
*
23792560 AAAGTCTAAAACAAT
1 AAAGCCTAAAACAAT
23792575 AAAGCCTAAAACAAT
1 AAAGCCTAAAACAAT
23792590 CATTTAGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.17, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAGCCTAAAACAAT
Found at i:23797914 original size:47 final size:47
Alignment explanation
Indices: 23797845--23797940 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
23797835 TCCCTATACA
23797845 TAGATGACACCGATAGGGCTATACACAAATATTTAAGATATTGTTAC
1 TAGATGACACCGATAGGGCTATACACAAATATTTAAGATATTGTTAC
* *
23797892 TAGATGGCACTGATAGGGCTATACACAAATATTTAAGATATTGTTAC
1 TAGATGACACCGATAGGGCTATACACAAATATTTAAGATATTGTTAC
23797939 TA
1 TA
23797941 TGTTCGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (47 bp):
TAGATGACACCGATAGGGCTATACACAAATATTTAAGATATTGTTAC
Found at i:23800719 original size:26 final size:24
Alignment explanation
Indices: 23800676--23800733 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 24
23800666 TAATATGTAC
*
23800676 ATACATATATGTACTAAAATAAATA
1 ATACATATAGGTACTAAAA-AAATA
23800701 TATACATATAGGTTA-TAAAAAAATA
1 -ATACATATAGG-TACTAAAAAAATA
23800726 ATTACATA
1 A-TACATA
23800734 GAGAAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 1 0.03
25 11 0.38
26 15 0.52
27 2 0.07
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (24 bp):
ATACATATAGGTACTAAAAAAATA
Found at i:23802474 original size:132 final size:132
Alignment explanation
Indices: 23802227--23803392 Score: 1981
Period size: 132 Copynumber: 8.8 Consensus size: 132
23802217 TGCTCTGTTG
* * * *
23802227 CTGCCCAGAGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* *
23802292 GCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23802357 TA
131 TA
*
23802359 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * *
23802424 ACCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCCTCTCCGC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23802489 TA
131 TA
*
23802491 CTGCTCAGGGAGACAATGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * *
23802556 GCCGTCTTCGCTCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCAC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23802621 TA
131 TA
*
23802623 CTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * *
23802688 GCCGTCTTCGCTCTGCTCTACTACTGCTTAGGGAGATAAGATATATAATCTTCAACCTTCTCCGC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23802753 TA
131 TA
*
23802755 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* *
23802820 GCAGTCTTCGCTCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23802885 TA
131 TA
* *
23802887 CTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * * *
23802952 ACCGTCTTCGATCTGCCCCACTACTCCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGT
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23803017 TA
131 TA
23803019 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
*
23803084 GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAGATAAGATCTATAATCTTCAACCTTCTCC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTA-GG-GAGATAAGATCTATAATCTTCAACCTTCTCC
23803149 GCTA
129 GCTA
*
23803153 CTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* *
23803218 GCCGTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCTGC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
23803283 TA
131 TA
* * *
23803285 CTGCTTAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
1 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * *
23803350 GCCGTCTTTGATCTGTTCAACTACTGCTTAGGGAGATAAGATC
66 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
23803393 ACTGGTTACC
Statistics
Matches: 977, Mismatches: 55, Indels: 4
0.94 0.05 0.00
Matches are distributed among these distances:
132 847 0.87
133 4 0.00
134 126 0.13
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGC
TA
Found at i:23802593 original size:44 final size:44
Alignment explanation
Indices: 23802545--23802861 Score: 118
Period size: 44 Copynumber: 7.2 Consensus size: 44
23802535 TATCTTGGAA
*
23802545 AGATAAGATTCGCCGTCTTCGCTCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCACTCTGCTCCACTACTGCTTAGGG
**** * * *
23802589 AGATAAGA-TCTATAATCTTTAAC-CTTCTCCACTACTGCTCAGGG
1 AGATAAGATTC-GCCGTC-TTCACTCTGCTCCACTACTGCTTAGGG
* * ** * * * *
23802633 AGACAAGGCTT-GGTGGCTTTAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTCACTCTGC-T-CCACTACTGCTTAGG-G
* *
23802677 AGATAAGATTCGCCGTCTTCGCTCTGCTCTACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCACTCTGCTCCACTACTGCTTAGGG
**** * * *
23802721 AGATAAGATAT-ATAATCTTCAAC-CTTCTCCGCTACTGCTCAGGG
1 AGATAAGAT-TCGCCGTCTTC-ACTCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
23802765 AGACAAGGCTT-GGTGGCTTAAATATGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTCACTCTGC-T-CCACTACTGCTTAGG-G
* *
23802809 AGATAAGATTCGCAGTCTTCGCTCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCACTCTGCTCCACTACTGCTTAGGG
23802853 AGATAAGAT
1 AGATAAGAT
23802862 CTATAATCTT
Statistics
Matches: 187, Mismatches: 63, Indels: 46
0.63 0.21 0.16
Matches are distributed among these distances:
42 11 0.06
43 20 0.11
44 128 0.68
45 16 0.09
46 12 0.06
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (44 bp):
AGATAAGATTCGCCGTCTTCACTCTGCTCCACTACTGCTTAGGG
Found at i:23811157 original size:22 final size:23
Alignment explanation
Indices: 23811132--23811184 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
23811122 TTGCAAAGTA
*
23811132 TCATTCTACCC-TAAAAGGGCTT
1 TCATACTACCCATAAAAGGGCTT
*
23811154 TCATACTACCCATAGAAGGGCTT
1 TCATACTACCCATAAAAGGGCTT
23811177 TCATACTA
1 TCATACTA
23811185 TTTGTACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (23 bp):
TCATACTACCCATAAAAGGGCTT
Found at i:23812784 original size:15 final size:15
Alignment explanation
Indices: 23812764--23812795 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23812754 TTCTTTCTCA
23812764 ATACATTTCGCATTT
1 ATACATTTCGCATTT
*
23812779 ATACATTTCTCATTT
1 ATACATTTCGCATTT
23812794 AT
1 AT
23812796 GAATGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.03, T:0.50
Consensus pattern (15 bp):
ATACATTTCGCATTT
Found at i:23831886 original size:20 final size:20
Alignment explanation
Indices: 23831843--23831884 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
23831833 TAAAGAAAGT
23831843 AAATAAAATGGAAAGTAATG
1 AAATAAAATGGAAAGTAATG
23831863 AAATACAAAT-GAAAGTAA-G
1 AAATA-AAATGGAAAGTAATG
23831882 AAA
1 AAA
23831885 ATTTGAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.64, C:0.02, G:0.17, T:0.17
Consensus pattern (20 bp):
AAATAAAATGGAAAGTAATG
Found at i:23834741 original size:37 final size:37
Alignment explanation
Indices: 23834691--23834775 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
23834681 CATGACAGAC
*
23834691 GTTCTTTCCTCCTCTTTTACTGATTATTTTTCTTCTT
1 GTTCTTTCCTCCTCTTTTACCGATTATTTTTCTTCTT
23834728 GTTCTTTCCTCCTCTTTTACCGATTATTTTTCTTCTT
1 GTTCTTTCCTCCTCTTTTACCGATTATTTTTCTTCTT
* *
23834765 GTGCTTCCCTC
1 GTTCTTTCCTC
23834776 TTGGTGCATC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.07, C:0.28, G:0.07, T:0.58
Consensus pattern (37 bp):
GTTCTTTCCTCCTCTTTTACCGATTATTTTTCTTCTT
Found at i:23837308 original size:28 final size:28
Alignment explanation
Indices: 23837268--23837393 Score: 108
Period size: 28 Copynumber: 4.5 Consensus size: 28
23837258 GGTGTTATCA
* * *
23837268 TAAATGTAGAAGTCCGTCAGGACAATTT
1 TAAATGTGGAAGTCCGTCAGAACAATCT
* * * *
23837296 TAAATGTGGAAGTCCTTTAGGACGATCT
1 TAAATGTGGAAGTCCGTCAGAACAATCT
* * * *
23837324 TAAATATGGAAGTCTGCCAGAACGATCT
1 TAAATGTGGAAGTCCGTCAGAACAATCT
* * * * *
23837352 GAACTGTAGAAGTCCTTGAGAACAATCT
1 TAAATGTGGAAGTCCGTCAGAACAATCT
23837380 TAAATGTGGAAGTC
1 TAAATGTGGAAGTC
23837394 TGTCTGGATG
Statistics
Matches: 75, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (28 bp):
TAAATGTGGAAGTCCGTCAGAACAATCT
Found at i:23840123 original size:13 final size:13
Alignment explanation
Indices: 23840105--23840150 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
23840095 AATATTATTT
*
23840105 ATTTAATCAATTA
1 ATTTAATAAATTA
*
23840118 ATTTAATTAATTA
1 ATTTAATAAATTA
*
23840131 AATTAATTAAATTA
1 ATTTAA-TAAATTA
23840145 ATTTAA
1 ATTTAA
23840151 GAATTAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTAATAAATTA
Found at i:23840127 original size:9 final size:9
Alignment explanation
Indices: 23840113--23840147 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
23840103 TTATTTAATC
*
23840113 AATTAATTT
1 AATTAATTA
23840122 AATTAATTA
1 AATTAATTA
23840131 AATTAATTA
1 AATTAATTA
23840140 AATTAATT
1 AATTAATT
23840148 TAAGAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
AATTAATTA
Found at i:23841556 original size:19 final size:19
Alignment explanation
Indices: 23841532--23841570 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
23841522 TGGAAGCCCT
* *
23841532 AACAGAAGAAAATGATACC
1 AACAGAAAAAAATGACACC
23841551 AACAGAAAAAAATGACACC
1 AACAGAAAAAAATGACACC
23841570 A
1 A
23841571 GCTCTAGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.18, G:0.13, T:0.08
Consensus pattern (19 bp):
AACAGAAAAAAATGACACC
Found at i:23845559 original size:44 final size:43
Alignment explanation
Indices: 23845509--23845646 Score: 113
Period size: 43 Copynumber: 3.2 Consensus size: 43
23845499 CTAACTTTTT
* *
23845509 GCGGCGCTTACAGAAAAAAACGCCGCTA-AAGATCATGTTCTTTA
1 GCGGCGCTT-CAGAAAAAAACGCCGCTAGAAG-TAATGTTCTATA
** **
23845553 GCGGCGCTTTGGATGAAAACGCCGCTAGAAGTAATGTTCTATA
1 GCGGCGCTTCAGAAAAAAACGCCGCTAGAAGTAATGTTCTATA
** * * *
23845596 GCGGCGCTT--GTTCAAAAACGCCGCTA-ATAGTAGTGTTATTTA
1 GCGGCGCTTCAG-AAAAAAACGCCGCTAGA-AGTAATGTTCTATA
23845638 GCGGCGCTT
1 GCGGCGCTT
23845647 ATTTCACAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.03
42 32 0.41
43 33 0.42
44 12 0.15
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
GCGGCGCTTCAGAAAAAAACGCCGCTAGAAGTAATGTTCTATA
Found at i:23845576 original size:43 final size:41
Alignment explanation
Indices: 23845524--23845646 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 41
23845514 GCTTACAGAA
23845524 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGAT-
1 AAAAACGCCGCTAAAG-T-ATGTTCTTTAGCGGCGCTTT-GATC
* * *
23845567 GAAAACGCCGCTAGAAGTAATGTTCTATAGCGGCGC-TTGTTC
1 AAAAACGCCGCTA-AAGT-ATGTTCTTTAGCGGCGCTTTGATC
*
23845609 AAAAACGCCGCTAATAGTAGTGTTATTTAGCGGCGCTT
1 AAAAACGCCGCTAA-AGTA-TGTTCTTTAGCGGCGCTT
23845647 ATTTCACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 4 0.06
42 31 0.46
43 30 0.44
44 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGTATGTTCTTTAGCGGCGCTTTGATC
Found at i:23845640 original size:42 final size:41
Alignment explanation
Indices: 23845524--23845660 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 41
23845514 GCTTACAGAA
* *
23845524 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGAT-
1 AAAAACGCCGCTAAAG-T-ATGTTCTTTAGCGGCGC-TTAGTTC
* *
23845567 GAAAACGCCGCTAGAAGTAATGTTCTATAGCGGCGCTT-GTTC
1 AAAAACGCCGCTA-AAGT-ATGTTCTTTAGCGGCGCTTAGTTC
* *
23845609 AAAAACGCCGCTAATAGTAGTGTTATTTAGCGGCGCTTATTTC
1 AAAAACGCCGCTAA-AGTA-TGTTCTTTAGCGGCGCTTAGTTC
*
23845652 ACAAACGCC
1 AAAAACGCC
23845661 ACTATTTGAT
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
41 4 0.05
42 33 0.41
43 40 0.50
44 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGTATGTTCTTTAGCGGCGCTTAGTTC
Found at i:23846110 original size:21 final size:21
Alignment explanation
Indices: 23846086--23846151 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
23846076 GTTTCTATCG
* *
23846086 CTGTTTCTCTCGCTGTGGCCT
1 CTGTTTCTCTCGCTGTAGCAT
*
23846107 CTGTTTCTCTCACTGTAGCAT
1 CTGTTTCTCTCGCTGTAGCAT
* * **
23846128 CTGCTTCCCTCGCTGCCGCAT
1 CTGTTTCTCTCGCTGTAGCAT
23846149 CTG
1 CTG
23846152 CTTTAAGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.06, C:0.36, G:0.20, T:0.38
Consensus pattern (21 bp):
CTGTTTCTCTCGCTGTAGCAT
Found at i:23848204 original size:7 final size:7
Alignment explanation
Indices: 23848194--23848239 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
23848184 TGGTATATTT
23848194 TTATGTA
1 TTATGTA
23848201 TTATGTAA
1 TTATGT-A
23848209 GTTATGTAA
1 -TTATGT-A
23848218 GTTATGTA
1 -TTATGTA
23848226 TTATGTA
1 TTATGTA
23848233 TTATGTA
1 TTATGTA
23848240 AGTACTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.54
8 2 0.05
9 15 0.41
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (7 bp):
TTATGTA
Found at i:23848215 original size:9 final size:9
Alignment explanation
Indices: 23848201--23848490 Score: 329
Period size: 9 Copynumber: 32.6 Consensus size: 9
23848191 TTTTTATGTA
23848201 TTATGTAAG
1 TTATGTAAG
23848210 TTATGTAAG
1 TTATGTAAG
23848219 TTATGT-A-
1 TTATGTAAG
23848226 TTATGT-A-
1 TTATGTAAG
23848233 TTATGTAAG
1 TTATGTAAG
23848242 -TACTGTAAG
1 TTA-TGTAAG
*
23848251 TAATGTAAG
1 TTATGTAAG
23848260 TTATGTAAG
1 TTATGTAAG
* *
23848269 TTATTTAAT
1 TTATGTAAG
*
23848278 TTATGTAGG
1 TTATGTAAG
23848287 TTATGTAAG
1 TTATGTAAG
* * * *
23848296 TCCACGGAAT
1 T-TATGTAAG
23848306 TTATGTAAG
1 TTATGTAAG
23848315 TTATGTAAG
1 TTATGTAAG
* **
23848324 TTATTTATT
1 TTATGTAAG
23848333 TTATGTAAG
1 TTATGTAAG
*
23848342 CTATGTAAG
1 TTATGTAAG
* *
23848351 TTATTTAAT
1 TTATGTAAG
*
23848360 TTATGTAGG
1 TTATGTAAG
23848369 TTATGTAAG
1 TTATGTAAG
23848378 TTATGTAAG
1 TTATGTAAG
* *
23848387 TTATTTAAT
1 TTATGTAAG
*
23848396 TTATGTAGG
1 TTATGTAAG
23848405 TTATGTAAG
1 TTATGTAAG
23848414 TTATGTAAG
1 TTATGTAAG
* *
23848423 TTATTTAAT
1 TTATGTAAG
*
23848432 TTATGTAGG
1 TTATGTAAG
23848441 TTATGTAAG
1 TTATGTAAG
23848450 TTATGTAAG
1 TTATGTAAG
23848459 TTATGTAAG
1 TTATGTAAG
23848468 TTATGTAAG
1 TTATGTAAG
*
23848477 TTATTTAAG
1 TTATGTAAG
23848486 TTATG
1 TTATG
23848491 AAAGACCGGT
Statistics
Matches: 232, Mismatches: 44, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
7 13 0.06
8 4 0.02
9 209 0.90
10 6 0.03
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:23848554 original size:26 final size:25
Alignment explanation
Indices: 23848518--23848591 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 25
23848508 TTAATTCTTT
23848518 AAGAATTATGTAACTGCTGTATTATG
1 AAGAATTATGTAACTG-TGTATTATG
** *
23848544 AAGAATTATGTTAGTTATGTATTATG
1 AAGAATTATG-TAACTGTGTATTATG
23848570 AA-AATTATGTAAGCTGTGTATT
1 AAGAATTATGTAA-CTGTGTATT
23848592 GTATAAGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 2 0.05
25 14 0.35
26 21 0.52
27 3 0.08
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (25 bp):
AAGAATTATGTAACTGTGTATTATG
Found at i:23848589 original size:25 final size:25
Alignment explanation
Indices: 23848521--23848659 Score: 145
Period size: 25 Copynumber: 5.5 Consensus size: 25
23848511 ATTCTTTAAG
* **
23848521 AATTATGTAACTGCTGTATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
*
23848546 GAATTATGTTAGTTATGTATTATGAA
1 -AATTATGTAAGTTATGTATTATGAA
* * *
23848572 AATTATGTAAGCTGTGTATTGT-ATA
1 AATTATGTAAGTTATGTATTATGA-A
* * *
23848597 AGTTATGTAAGTTTTATATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
**
23848622 AATTAAATAAGTTATGTATTATGAA
1 AATTATGTAAGTTATGTATTATGAA
23848647 AATTATGTAAGTT
1 AATTATGTAAGTT
23848660 CCAATATTAT
Statistics
Matches: 91, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
24 1 0.01
25 68 0.75
26 22 0.24
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (25 bp):
AATTATGTAAGTTATGTATTATGAA
Found at i:23848728 original size:126 final size:126
Alignment explanation
Indices: 23848620--23848870 Score: 360
Period size: 126 Copynumber: 2.0 Consensus size: 126
23848610 TTATATTATG
* * *
23848620 AAAATTAAATAAGTTATGTATTATGAAAATTATGTAAGTTCCAATATTATGTAAGCTATGTATTA
1 AAAATCAAATAAGTTATGTACTATGAAAATTAGGTAAGTT-CAATATTATGTAAGCTATGTATTA
* * *
23848685 TGAA-ATTTAAGTAAGCTGTGTATTGTATAAGTTATGTAGGTTATGAAAATTATGTAAGTTC
65 TAAACAATTAAGTAAGCTGTGTATTGAATAAGTTATGTAGGTTATGAAAATTATGTAAGTTC
* *** * *
23848746 AATATCGTTTAAGTTATGTACTATGAAAATTAGGTAAGTTCAATATTATGTAAGTTGTGTATTAT
1 AAAATCAAATAAGTTATGTACTATGAAAATTAGGTAAGTTCAATATTATGTAAGCTATGTATTAT
* *
23848811 AAACAATTATGTAAGTTGTGTATTGAATAAGTTATGTAGGTTATGAAAATTATGTAAGTT
66 AAACAATTAAGTAAGCTGTGTATTGAATAAGTTATGTAGGTTATGAAAATTATGTAAGTT
23848871 ATGTACTGTG
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
125 25 0.23
126 85 0.77
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.41
Consensus pattern (126 bp):
AAAATCAAATAAGTTATGTACTATGAAAATTAGGTAAGTTCAATATTATGTAAGCTATGTATTAT
AAACAATTAAGTAAGCTGTGTATTGAATAAGTTATGTAGGTTATGAAAATTATGTAAGTTC
Found at i:23851566 original size:12 final size:12
Alignment explanation
Indices: 23851549--23851575 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23851539 AAATTATGAC
23851549 ATTATTAATATT
1 ATTATTAATATT
23851561 ATTATTAATATT
1 ATTATTAATATT
23851573 ATT
1 ATT
23851576 TAAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:23852144 original size:14 final size:13
Alignment explanation
Indices: 23852105--23852166 Score: 61
Period size: 14 Copynumber: 4.5 Consensus size: 13
23852095 GACTAAAGCG
23852105 ACCTAAACCCCAA
1 ACCTAAACCCCAA
*
23852118 ACCCAAACCCCAA
1 ACCTAAACCCCAA
*
23852131 ACCTTAAACGCCAA
1 ACC-TAAACCCCAA
**
23852145 ACTCCCAACCCCTAA
1 AC-CTAAACCCC-AA
23852160 ACCTAAA
1 ACCTAAA
23852167 ACACTAAACC
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
13 15 0.39
14 18 0.47
15 5 0.13
ACGTcount: A:0.44, C:0.45, G:0.02, T:0.10
Consensus pattern (13 bp):
ACCTAAACCCCAA
Found at i:23852161 original size:29 final size:27
Alignment explanation
Indices: 23852108--23852168 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
23852098 TAAAGCGACC
23852108 TAAACCCCAAACCCAAACCCCAAACCT
1 TAAACCCCAAACCCAAACCCCAAACCT
* *
23852135 TAAACGCCAAACTCCCAACCCCTAAACCT
1 TAAACCCCAAAC-CCAAACCCC-AAACCT
*
23852164 AAAAC
1 TAAAC
23852169 ACTAAACCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 11 0.38
28 8 0.28
29 10 0.34
ACGTcount: A:0.44, C:0.44, G:0.02, T:0.10
Consensus pattern (27 bp):
TAAACCCCAAACCCAAACCCCAAACCT
Found at i:23852668 original size:114 final size:112
Alignment explanation
Indices: 23852468--23853213 Score: 747
Period size: 114 Copynumber: 6.6 Consensus size: 112
23852458 TTTACATGAG
* *
23852468 CGCCACTAATTCTAATATACATCAAGACCAAATGCTGCGTTTTGGTTAAGATATTTTGCGGCGAT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCG-T
* * **
23852533 TCTTACAAAGCATCTCTAATACTCTGCTTTAGCGGCCATTTTCCGTAAC
65 TTTTACAAAACGCCTCTAATACTCTGCTTTAGCGG-CATTTTCCGTAAC
* * * *
23852582 CGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCAGCGTT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
* * * * * * ** *
23852647 TTGTATAAAATGCCGCTAATACTGTGCTATAGCGGCGTTTTCCCACAAT
66 TT-TACAAAACGCCTCTAATACTCTGCTTTAGCGGCATTTT-CCGTAAC
* * * *
23852696 CGCCACTAATTCTAATATACATTAAGACCAAATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
* * * *
23852761 TCTTACAAAGCGCCTCTAATACTCTCCCTTAGCGGCGTTTTTCCGTAAC
66 T-TTACAAAACGCCTCTAATACTCTGCTTTAGCGGC-ATTTTCCGTAAC
* * *
23852810 CGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
* * * * ** *
23852875 TTATACAAAACGCCGCTAATACTGTGCTATAGCGGCGTTTTCCCACAAT
66 TT-TACAAAACGCCTCTAATACTCTGCTTTAGCGGCATTTT-CCGTAAC
* * * *
23852924 CGCCACTAATTCTAATATACATTAAGACCAAACGCTACGTTTTGGTTAAGATAATTTGCGGCGTT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
* * * *
23852989 TCTTACAAAGCCCCTCTAATACTCTCCTTTAGCGGCATTTTTCTGTAAC
66 T-TTACAAAACGCCTCTAATACTCTGCTTTAGCGGCA-TTTTCCGTAAC
** * * *
23853038 CGCCACTAATTCTTTTATACCTCAAGACCAAATGATGCGTTTTGGTTAAGATATTTTGCGACGTT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
* * * * * * * * * *
23853103 TACTAAAAAACGCCACTAATAATATACTATAGCGGCGTTTAT-CATAAA
66 T-TTACAAAACGCCTCTAATACTCTGCTTTAGCGGCATTT-TCCGTAAC
* * * ** * * * * *
23853151 CGCCACCAAGTCTAATATACCTCGGGAACAAACGATGCATTTTGGCTAACATTTTTTGCGGCG
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCG
23853214 CTTACAAATA
Statistics
Matches: 513, Mismatches: 110, Indels: 19
0.80 0.17 0.03
Matches are distributed among these distances:
113 69 0.13
114 434 0.85
115 10 0.02
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (112 bp):
CGCCACTAATTCTAATATACATCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
TTTACAAAACGCCTCTAATACTCTGCTTTAGCGGCATTTTCCGTAAC
Found at i:23852865 original size:228 final size:227
Alignment explanation
Indices: 23852468--23853142 Score: 1084
Period size: 228 Copynumber: 3.0 Consensus size: 227
23852458 TTTACATGAG
* * *
23852468 CGCCACTAATTCTAATATACATCAAGACCAAATGCTGCGTTTTGGTTAAGATATTTTGCGGCGAT
1 CGCCACTAATTCTAATATACATTAAGACCAAATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTT
* *
23852533 TCTTACAAAGCATCTCTAATACTCTGCTTTAGCGGCCA-TTTTCCGTAACCGCCACTAATTCTTA
66 TCTTACAAAGCACCTCTAATACTCTCCTTTAGCGG-CATTTTTCCGTAACCGCCACTAATTCTTA
* * *
23852597 TATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCAGCGTTTTGTATAAAATGCCG
130 TATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGC-GCGTTTTATAAAAAACGCCG
23852662 CTAATACTGTGCTATAGCGGCGTTTTCCCACAAT
194 CTAATACTGTGCTATAGCGGCGTTTTCCCACAAT
23852696 CGCCACTAATTCTAATATACATTAAGACCAAATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTT
1 CGCCACTAATTCTAATATACATTAAGACCAAATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTT
* * *
23852761 TCTTACAAAGCGCCTCTAATACTCTCCCTTAGCGGCGTTTTTCCGTAACCGCCACTAATTCTTAT
66 TCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCATTTTTCCGTAACCGCCACTAATTCTTAT
*
23852826 ATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTTATACAAAACGCCGC
131 ATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGC-GCGTTTTATAAAAAACGCCGC
23852891 TAATACTGTGCTATAGCGGCGTTTTCCCACAAT
195 TAATACTGTGCTATAGCGGCGTTTTCCCACAAT
* *
23852924 CGCCACTAATTCTAATATACATTAAGACCAAACGCTACGTTTTGGTTAAGATAATTTGCGGCGTT
1 CGCCACTAATTCTAATATACATTAAGACCAAATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTT
* * *
23852989 TCTTACAAAGCCCCTCTAATACTCTCCTTTAGCGGCATTTTTCTGTAACCGCCACTAATTCTTTT
66 TCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCATTTTTCCGTAACCGCCACTAATTCTTAT
* * *
23853054 ATACCTCAAGACCAAATGATGCGTTTTGGTTAAGATATTTTGCGACG-TTTACTAAAAAACGCCA
131 ATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCG-CGTTTTA-TAAAAAACGCCG
* * *
23853118 CTAATAATATACTATAGCGGCGTTT
194 CTAATACTGTGCTATAGCGGCGTTT
23853143 ATCATAAACG
Statistics
Matches: 418, Mismatches: 26, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
227 6 0.01
228 412 0.99
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (227 bp):
CGCCACTAATTCTAATATACATTAAGACCAAATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTT
TCTTACAAAGCACCTCTAATACTCTCCTTTAGCGGCATTTTTCCGTAACCGCCACTAATTCTTAT
ATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGCGTTTTATAAAAAACGCCGCT
AATACTGTGCTATAGCGGCGTTTTCCCACAAT
Found at i:23853079 original size:342 final size:341
Alignment explanation
Indices: 23852468--23853235 Score: 830
Period size: 342 Copynumber: 2.2 Consensus size: 341
23852458 TTTACATGAG
* * * *
23852468 CGCCACTAATTCTAATATACATCAAGACCAAATGCTGCGTTTTGGTTAAGATATTTTGCGGCGAT
1 CGCCACTAATTCTAATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCG-T
* * ** * * ** *
23852533 TCT-TACAAAGCATCTCTAATACTCTGCTTTAGCGGCCATTTTCCGTAACCGCCACTAATTCTTA
65 TTTATACAAAACGCCGCTAATACTCTGCTATAGCGGCCATTTTCCACAACCGCCACTAATTCTAA
* * * * **
23852597 TATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCAGCGTTTTGTATAAAATGCCG
130 TATACATCAAGACAAAACGATACGTTTTGGTTAAGATAATTTGCAGCGTTTTGTACAAAACCCCG
* * * * *
23852662 CTAATACTGTGCTATAGCGGCGTTTTCCCACAATCGCCACTAATTCTAATATACATTAAGACCAA
195 CTAATACTCTCCTATAGCGGCATTTTCCCACAACCGCCACTAATTCTAATATACATCAAGACCAA
* * * * * * * *
23852727 ATGCTGCGTTTTGGTTAAGATAATTTGCGGCGTTT-CTTACAAAGCGCCTCTAATACTCTCCCT-
260 ATGATGCGTTTTGGTTAAGATAATTTGCGACGTTTAC-TAAAAAACGCCACTAATAATAT-ACTA
* * *
23852790 TAGCGGCGTTTTTCCGTAAC
323 TAGCGGCGTTTAT-CATAAA
*
23852810 CGCCACTAATTCTTATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
1 CGCCACTAATTCTAATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
* * *
23852875 TTATACAAAACGCCGCTAATACTGTGCTATAGCGG-CGTTTTCCCACAATCGCCACTAATTCTAA
66 TTATACAAAACGCCGCTAATACTCTGCTATAGCGGCCATTTT-CCACAACCGCCACTAATTCTAA
* * * * *
23852939 TATACATTAAGACCAAACGCTACGTTTTGGTTAAGATAATTTGCGGCGTTTCT-TACAAAGCCCC
130 TATACATCAAGACAAAACGATACGTTTTGGTTAAGATAATTTGCAGCGTTT-TGTACAAAACCCC
* * * *** ** *
23853003 TCTAATACTCTCCTTTAGCGGCATTTTTCTGTAACCGCCACTAATTCTTTTATACCTCAAGACCA
194 GCTAATACTCTCCTATAGCGGCATTTTCCCACAACCGCCACTAATTCTAATATACATCAAGACCA
*
23853068 AATGATGCGTTTTGGTTAAGATATTTTGCGACGTTTACTAAAAAACGCCACTAATAATATACTAT
259 AATGATGCGTTTTGGTTAAGATAATTTGCGACGTTTACTAAAAAACGCCACTAATAATATACTAT
23853133 AGCGGCGTTTATCATAAA
324 AGCGGCGTTTATCATAAA
* * ** * * * *
23853151 CGCCACCAAGTCTAATATACCTCGGGA-ACAAACGATGCATTTTGGCTAACATTTTTTGCGGCG-
1 CGCCACTAATTCTAATATACCTCAAGACA-AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGT
* * *
23853214 CTTACAAATAAACGCCGCTAAT
65 TTTATACA-AAACGCCGCTAAT
23853236 TATGCTATAT
Statistics
Matches: 353, Mismatches: 66, Indels: 15
0.81 0.15 0.03
Matches are distributed among these distances:
340 6 0.02
341 79 0.22
342 266 0.75
343 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (341 bp):
CGCCACTAATTCTAATATACCTCAAGACAAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTT
TTATACAAAACGCCGCTAATACTCTGCTATAGCGGCCATTTTCCACAACCGCCACTAATTCTAAT
ATACATCAAGACAAAACGATACGTTTTGGTTAAGATAATTTGCAGCGTTTTGTACAAAACCCCGC
TAATACTCTCCTATAGCGGCATTTTCCCACAACCGCCACTAATTCTAATATACATCAAGACCAAA
TGATGCGTTTTGGTTAAGATAATTTGCGACGTTTACTAAAAAACGCCACTAATAATATACTATAG
CGGCGTTTATCATAAA
Found at i:23860767 original size:40 final size:40
Alignment explanation
Indices: 23860708--23860788 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
23860698 TTATACTGGT
* *
23860708 GGCCAGGTCTTAAGTGAGAGGTTATCAAATTTATGGCTAA
1 GGCCAAGTCTTAAGCGAGAGGTTATCAAATTTATGGCTAA
*
23860748 GGCCAAGTCTTAAGCGAGAGGTTATCGAATTTATGGCTAA
1 GGCCAAGTCTTAAGCGAGAGGTTATCAAATTTATGGCTAA
23860788 G
1 G
23860789 TGTCTGAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (40 bp):
GGCCAAGTCTTAAGCGAGAGGTTATCAAATTTATGGCTAA
Found at i:23864852 original size:17 final size:19
Alignment explanation
Indices: 23864810--23864854 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
23864800 ATGAAAAAAC
*
23864810 ATTTTGAAATTGAATAACG
1 ATTTGGAAATTGAATAACG
*
23864829 ATTTGGAAA-TGAATAATG
1 ATTTGGAAATTGAATAACG
23864847 -TTTGGAAA
1 ATTTGGAAA
23864855 ACGAACGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.33
18 8 0.33
19 8 0.33
ACGTcount: A:0.42, C:0.02, G:0.20, T:0.36
Consensus pattern (19 bp):
ATTTGGAAATTGAATAACG
Found at i:23865211 original size:25 final size:25
Alignment explanation
Indices: 23865183--23865245 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
23865173 AATTATCTTT
* *
23865183 GATAGTATATCCTGAAACTGCTATA
1 GATAGTATATACTGAAACTACTATA
* *
23865208 GATAATATATACTGAGACTACTATA
1 GATAGTATATACTGAAACTACTATA
23865233 GATAG-ACTATACT
1 GATAGTA-TATACT
23865246 AAAAACACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.03
25 31 0.97
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (25 bp):
GATAGTATATACTGAAACTACTATA
Found at i:23871150 original size:16 final size:16
Alignment explanation
Indices: 23871126--23871179 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
23871116 TTTGGTTCGT
* *
23871126 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
23871142 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
**
23871158 TGTAAAAGAATAGAGG
1 TGTAATGGAATAGAGG
23871174 TGTAAT
1 TGTAAT
23871180 AGCAAATCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:23871362 original size:25 final size:25
Alignment explanation
Indices: 23871330--23871384 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
23871320 TAATTTAATC
*
23871330 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
23871354 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
23871379 ATATAT
1 ATATAT
23871385 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:23871588 original size:26 final size:28
Alignment explanation
Indices: 23871559--23871619 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
23871549 TATGAATTTG
*
23871559 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
23871585 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
23871613 TAAAATT
1 TATAATT
23871620 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:23871621 original size:91 final size:89
Alignment explanation
Indices: 23871525--23871741 Score: 290
Period size: 91 Copynumber: 2.4 Consensus size: 89
23871515 AATTTAAAAT
* * * *
23871525 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
23871590 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* * *
23871616 AATTATTGATAATAATTTTTCATATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAA-ATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
23871681 TTTAATAATGATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
*
23871707 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
23871742 CTAAAATCAA
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
91 88 0.81
92 21 0.19
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:23871622 original size:44 final size:43
Alignment explanation
Indices: 23871559--23871701 Score: 130
Period size: 44 Copynumber: 3.2 Consensus size: 43
23871549 TATGAATTTG
23871559 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAATAATA
* * *
23871603 TATAATTTCATAA-AATTATTGA-TAATA-ATTTTTCATATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAATATA-ATTTAATA-AT-AA--TA
* * *
23871650 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAATAATA
23871694 TATAATTT
1 TATAATTT
23871702 CATAAAATTC
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
42 1 0.01
43 9 0.12
44 28 0.36
45 6 0.08
46 5 0.06
47 18 0.23
48 10 0.13
49 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATAATA
Found at i:23871716 original size:47 final size:47
Alignment explanation
Indices: 23871566--23871722 Score: 137
Period size: 47 Copynumber: 3.4 Consensus size: 47
23871556 TTGTATAATT
* * * * *
23871566 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* * * *
23871613 TAAAATTATTGATAAT-AAT-T--TTTCATATATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATTTAATA-ATG-ATATATA-ATTTCA
* *
23871657 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
23871704 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
23871723 ATGTTCTTAT
Statistics
Matches: 83, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
43 6 0.07
44 15 0.18
45 13 0.16
46 12 0.14
47 31 0.37
48 6 0.07
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:23880395 original size:13 final size:14
Alignment explanation
Indices: 23880377--23880405 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23880367 GTAATTTAAT
23880377 AATAAAT-AAACAA
1 AATAAATAAAACAA
23880390 AATAAATAAAACAA
1 AATAAATAAAACAA
23880404 AA
1 AA
23880406 ATCCCATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
AATAAATAAAACAA
Found at i:23882889 original size:19 final size:20
Alignment explanation
Indices: 23882867--23882905 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
23882857 ATACAAACTC
23882867 AATTTCAT-AATTTTCACAT
1 AATTTCATAAATTTTCACAT
23882886 AATTTCATAAAATTTTCACA
1 AATTTCAT-AAATTTTCACA
23882906 CATAATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTTCATAAATTTTCACAT
Found at i:23895306 original size:27 final size:27
Alignment explanation
Indices: 23895268--23895507 Score: 274
Period size: 27 Copynumber: 8.9 Consensus size: 27
23895258 GTTATGACCA
*
23895268 AAATACCCTCATAGGGTAAAATAATCG
1 AAATACCCTCATAGGGTAAAATGATCG
23895295 AAATACCCTCATAGGGTAAAATGA-CTG
1 AAATACCCTCATAGGGTAAAATGATC-G
* * *
23895322 AAATA-CCTCCTTAGGATAAAATGACCG
1 AAATACCCT-CATAGGGTAAAATGATCG
*
23895349 AAATACCC-CTATAGGGTAAAATGACCG
1 AAATACCCTC-ATAGGGTAAAATGATCG
23895376 AAATACCCTCATAGGGTAAAATGATCG
1 AAATACCCTCATAGGGTAAAATGATCG
* * *
23895403 TAATA-CCTCTATAGGGTAGAATGACCG
1 AAATACCCTC-ATAGGGTAAAATGATCG
*
23895430 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCTCATAGGGTAAAATGATCG
* * *
23895457 GAATAACCC-CATAAGGTAGAATGATCG
1 AAAT-ACCCTCATAGGGTAAAATGATCG
* *
23895484 AAATACCCCCATAGAGTAAAATGA
1 AAATACCCTCATAGGGTAAAATGA
23895508 CTGTTATACC
Statistics
Matches: 183, Mismatches: 20, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.07
27 159 0.87
28 11 0.06
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
AAATACCCTCATAGGGTAAAATGATCG
Found at i:23895519 original size:81 final size:80
Alignment explanation
Indices: 23895261--23895508 Score: 320
Period size: 81 Copynumber: 3.1 Consensus size: 80
23895251 TTACACTGTT
* * *
23895261 ATGACCAAAATACCCTCATAGGGTAAAATAATCGAAATACCCTCATAGGGTAAAATGA-CTGAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGATC-GAAA
*
23895325 TACCTCCTTAGGATAAA
65 TACCTCCATAGG-TAAA
* * *
23895342 ATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGATCGTAAT
1 ATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGATCGAAAT
* *
23895407 ACCTCTATAGGGTAGA
66 ACCTCCATA-GGTAAA
* * *
23895423 ATGACCGAAATACCCCCATAGGGTAAAATGATCGGAATAACCC-CATAAGGTAGAATGATCGAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATGATCGAAAT-ACCCTCATAGGGTAAAATGATCGAAA
*
23895487 TACCCCCATAGAGTAAA
65 TACCTCCATAG-GTAAA
23895504 ATGAC
1 ATGAC
23895509 TGTTATACCC
Statistics
Matches: 145, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
80 1 0.01
81 137 0.94
82 7 0.05
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (80 bp):
ATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGATCGAAAT
ACCTCCATAGGTAAA
Found at i:23898162 original size:26 final size:26
Alignment explanation
Indices: 23898095--23898164 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
23898085 GGATAGGTCA
*
23898095 TAAATTACCGAAATAACCTCGATGGG
1 TAAATTACCGAAATACCCTCGATGGG
**
23898121 TAAATTATTGAAATACCCTCGATGGG
1 TAAATTACCGAAATACCCTCGATGGG
*
23898147 TAAATTACCAAAATACCC
1 TAAATTACCGAAATACCC
23898165 CTAGGAGATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (26 bp):
TAAATTACCGAAATACCCTCGATGGG
Found at i:23905803 original size:26 final size:26
Alignment explanation
Indices: 23905738--23905807 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
23905728 GGATAGGTCT
*
23905738 TAAATTATCGAAATAACCACGATGGG
1 TAAATTATCGAAATACCCACGATGGG
* * * *
23905764 TAAATCACCAAAATACCCTCGATGGG
1 TAAATTATCGAAATACCCACGATGGG
23905790 TAAATTATCGAAATACCC
1 TAAATTATCGAAATACCC
23905808 CTAGGAGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.23
Consensus pattern (26 bp):
TAAATTATCGAAATACCCACGATGGG
Found at i:23905998 original size:27 final size:27
Alignment explanation
Indices: 23905960--23906033 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
23905950 GTGGAGGAAG
23905960 TACTGTTACTGGTGGCTCTGCCACA-A
1 TACTGTTACTGGTGGCTCTGCCACATA
*
23905986 TTACTGTTACTGGTGGCTTTGCCACATA
1 -TACTGTTACTGGTGGCTCTGCCACATA
* *
23906014 TACTG-TACCGGTAGCTCTGC
1 TACTGTTACTGGTGGCTCTGC
23906034 TGCGATATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 12 0.29
27 29 0.69
28 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.34
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTCTGCCACATA
Found at i:23906582 original size:18 final size:18
Alignment explanation
Indices: 23906559--23906604 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
23906549 GAAACAAATA
23906559 TGTTTTCACA-ACAAACAC
1 TGTTTTCA-AGACAAACAC
23906577 TGTTTTCAAGACAAACAC
1 TGTTTTCAAGACAAACAC
*
23906595 ATATTTTCAA
1 -TGTTTTCAA
23906605 CTTCAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 16 0.64
19 8 0.32
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.33
Consensus pattern (18 bp):
TGTTTTCAAGACAAACAC
Found at i:23913184 original size:51 final size:51
Alignment explanation
Indices: 23913064--23913305 Score: 201
Period size: 50 Copynumber: 4.8 Consensus size: 51
23913054 ATCATTCGAA
* * * * *
23913064 ACACGTAGTAGCCTTCACATAGTACTACACGCATGATCA--AACTTTCCA-GT
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAA-TAT-CAGGT
* * ** * *
23913114 TCTCGTAGTAGCCCGCACATAGTACTACACACGTGACCATTAATATCTGAT
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAATATCAGGT
* *
23913165 ACACGTAGTAGCCTACACATAGTACTACACACGTG---ATTGAAGCTATCCGGC
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCATT-AA--TATCAGGT
* * * * * * * *
23913216 ACGCATAGTAGCCTGCACACAGTACTACACATGCGACCTTTCAT-TCAGGT
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAATATCAGGT
23913266 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
23913306 CACTTTCACT
Statistics
Matches: 149, Mismatches: 34, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
48 3 0.02
49 2 0.01
50 70 0.47
51 69 0.46
52 2 0.01
53 1 0.01
54 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
ACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAATATCAGGT
Found at i:23913269 original size:101 final size:101
Alignment explanation
Indices: 23913064--23913301 Score: 289
Period size: 101 Copynumber: 2.4 Consensus size: 101
23913054 ATCATTCGAA
* * * * ** * *
23913064 ACACGTAGTAGCCTTCACATAGTACTACACGCATGATCAAACTTTCCAGTTCTCGTAGTAGCCCG
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGATCAAACTATCCAGCACGCATAGTAGCCCG
* * *
23913129 CACATAGTACTACACACGTGACCATTAATATCTGAT
66 CACACAGTACTACACACGCGACCATTAATATCAGAT
* * * *
23913165 ACACGTAGTAGCCTACACATAGTACTACACACGTGATTGAAGCTATCCGGCACGCATAGTAGCCT
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGA-TCAAACTATCCAGCACGCATAGTAGCCC
* * * *
23913230 GCACACAGTACTACACATGCGACCTTTCAT-TCAGGT
65 GCACACAGTACTACACACGCGACCATTAATATCAGAT
23913266 ACACGTAGTAGCCTACACATAGTACTACACACGTGA
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGA
23913302 CCATCACTTT
Statistics
Matches: 117, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
101 73 0.62
102 44 0.38
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
ACACGTAGTAGCCTACACATAGTACTACACACGTGATCAAACTATCCAGCACGCATAGTAGCCCG
CACACAGTACTACACACGCGACCATTAATATCAGAT
Found at i:23913324 original size:101 final size:99
Alignment explanation
Indices: 23913064--23913339 Score: 254
Period size: 101 Copynumber: 2.7 Consensus size: 99
23913054 ATCATTCGAA
* * * * * *
23913064 ACACGTAGTAGCCTTCACATAGTACTACACGCATGATCA-AACTTTCCAGTTCTCGTAGTAGCCC
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGA-CATAACTTTCC--TTCACATAGTAGCCT
* * *
23913128 GCACATAGTACTACACACGTGACCATTAATATCTGAT
63 GCACACAGTACTACACACGCGACCATTAATATCAGAT
* * **
23913165 ACACGTAGTAGCCTACACATAGTACTACACACGTGA-TTGAAGCTATCCGGCACGCATAGTAGCC
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGACAT-AA-CTTTCCTTCA--CATAGTAGCC
* * * *
23913229 TGCACACAGTACTACACATGCGACCTTTCAT-TCAGGT
62 TGCACACAGTACTACACACGCGACCATTAATATCAGAT
*
23913266 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCATCACTTTCACTTTCACATAGT-GACC
1 ACACGTAGTAGCCTACACATAGTACTACACACGTGA-CATAACTTTC-C-TTCACATAGTAG-CC
*
23913330 TACACACAGT
62 TGCACACAGT
23913340 CCATGTCACA
Statistics
Matches: 142, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
100 2 0.01
101 96 0.68
102 41 0.29
103 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (99 bp):
ACACGTAGTAGCCTACACATAGTACTACACACGTGACATAACTTTCCTTCACATAGTAGCCTGCA
CACAGTACTACACACGCGACCATTAATATCAGAT
Found at i:23916971 original size:17 final size:17
Alignment explanation
Indices: 23916949--23916982 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23916939 AACGATTGTG
23916949 CTCAATCCCACGTTCAA
1 CTCAATCCCACGTTCAA
23916966 CTCAATCCCACGTTCAA
1 CTCAATCCCACGTTCAA
23916983 TTTCAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.41, G:0.06, T:0.24
Consensus pattern (17 bp):
CTCAATCCCACGTTCAA
Found at i:23922818 original size:19 final size:18
Alignment explanation
Indices: 23922792--23922833 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
23922782 AAAAAAAGTG
23922792 AAAA-AAAGAAAAATAAGA
1 AAAATAAAGAAAAATAA-A
* *
23922810 AAAATAAAGAAGAATTAA
1 AAAATAAAGAAAAATAAA
23922828 AAAATA
1 AAAATA
23922834 TTTTTTGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (18 bp):
AAAATAAAGAAAAATAAA
Found at i:23933106 original size:28 final size:28
Alignment explanation
Indices: 23933066--23933121 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
23933056 TCTCTGATTG
23933066 ACCCTTAACCCTTAGACCACATTACAAC
1 ACCCTTAACCCTTAGACCACATTACAAC
23933094 ACCCTTAACCCTTAGACCACATTACAAC
1 ACCCTTAACCCTTAGACCACATTACAAC
23933122 CCTTAAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.39, G:0.04, T:0.21
Consensus pattern (28 bp):
ACCCTTAACCCTTAGACCACATTACAAC
Found at i:23934079 original size:13 final size:13
Alignment explanation
Indices: 23934061--23934126 Score: 71
Period size: 13 Copynumber: 5.1 Consensus size: 13
23934051 CTTAAACCAA
*
23934061 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
23934074 ACTTTTCAAAATC
1 ACTTTTCAAAAGC
*
23934087 ACTTTTCCATAA-C
1 ACTTTT-CAAAAGC
*
23934100 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
*
23934113 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
23934126 A
1 A
23934127 ATGCTAAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
12 3 0.07
13 37 0.84
14 4 0.09
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:23934226 original size:23 final size:24
Alignment explanation
Indices: 23934184--23934235 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
23934174 TCAAGAATAA
*
23934184 AAAAAGAAAAAACAACAAAA-CAG
1 AAAAAGAAAAAACAACAAAAGAAG
23934207 AAAAAGAAACCAAA-AA-AAAAGAAG
1 AAAAAGAAA--AAACAACAAAAGAAG
23934231 AAAAA
1 AAAAA
23934236 TTAGAGAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 13 0.52
24 9 0.36
25 3 0.12
ACGTcount: A:0.81, C:0.10, G:0.10, T:0.00
Consensus pattern (24 bp):
AAAAAGAAAAAACAACAAAAGAAG
Found at i:23934745 original size:23 final size:24
Alignment explanation
Indices: 23934694--23934746 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
23934684 AAGTTTTGAC
*
23934694 TTTTTTTAAAAATAGAAAGTTTAG
1 TTTTTTTAAAAATAGAAAATTTAG
*
23934718 -ATTTTTAAAAATA-AAAATTT-G
1 TTTTTTTAAAAATAGAAAATTTAG
23934739 TTTTTTTA
1 TTTTTTTA
23934747 GTCATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 12 0.48
23 12 0.48
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.51
Consensus pattern (24 bp):
TTTTTTTAAAAATAGAAAATTTAG
Found at i:23935781 original size:16 final size:16
Alignment explanation
Indices: 23935752--23935782 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23935742 ATTTCGTCTT
23935752 TATTTATTTTCATGTC
1 TATTTATTTTCATGTC
23935768 TATTTATTTTCATGT
1 TATTTATTTTCATGT
23935783 TTTTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (16 bp):
TATTTATTTTCATGTC
Found at i:23943577 original size:29 final size:29
Alignment explanation
Indices: 23943523--23943579 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
23943513 TATAACAAAC
*
23943523 ACTCTATTTCCGTAATTAATTTATTCTTG
1 ACTCTATTTCCGTAATTAATTAATTCTTG
**
23943552 ACTCTATTTTTGTAATT-ATTAAATTCTT
1 ACTCTATTTCCGTAATTAATT-AATTCTT
23943580 TTATATTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.54
Consensus pattern (29 bp):
ACTCTATTTCCGTAATTAATTAATTCTTG
Found at i:23945175 original size:20 final size:19
Alignment explanation
Indices: 23945152--23945194 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
23945142 AATTTAGCAA
*
23945152 TTTTTATTTTTATTTTAAT
1 TTTTTATTTTTAATTTAAT
*
23945171 GTTTTTGTTTTTAATTTAAT
1 -TTTTTATTTTTAATTTAAT
23945191 TTTT
1 TTTT
23945195 ACATTCTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (19 bp):
TTTTTATTTTTAATTTAAT
Found at i:23948777 original size:6 final size:6
Alignment explanation
Indices: 23948766--23948791 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
23948756 TCTAGCATAA
23948766 ATTTTT ATTTTT ATTTTT ATTTTT AT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT
23948792 GTTATGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:23948856 original size:24 final size:24
Alignment explanation
Indices: 23948812--23948861 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
23948802 TTAATTTTAT
* *
23948812 TTCTTTTATTGTTCATCATTATTA
1 TTCTTTTACTGTTCATCATTAGTA
*
23948836 TTCTGTTTACTGTT-ATTATTAGTA
1 TTCT-TTTACTGTTCATCATTAGTA
23948860 TT
1 TT
23948862 ATTATTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.20, C:0.10, G:0.08, T:0.62
Consensus pattern (24 bp):
TTCTTTTACTGTTCATCATTAGTA
Found at i:23950536 original size:6 final size:6
Alignment explanation
Indices: 23950500--23950570 Score: 56
Period size: 6 Copynumber: 11.7 Consensus size: 6
23950490 CTTTATCTAG
* * * *
23950500 TTTTAT GTTTTA- -TTTAT TTTTCT TGTTAT TTTTAT TTGTAC TTTTAT
1 TTTTAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
23950547 TTTTAT TATTTTT ATTTTAT TTTT
1 TTTTAT T-TTTAT -TTTTAT TTTT
23950571 CAGACTTATA
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
4 4 0.08
6 32 0.64
7 13 0.26
8 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:23950557 original size:21 final size:20
Alignment explanation
Indices: 23950531--23950570 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
23950521 CTTGTTATTT
23950531 TTATTTGTACTTTTATTTTTA
1 TTATTTGTA-TTTTATTTTTA
*
23950552 TTATTTTTATTTTATTTTT
1 TTATTTGTATTTTATTTTT
23950571 CAGACTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (20 bp):
TTATTTGTATTTTATTTTTA
Found at i:23956681 original size:172 final size:171
Alignment explanation
Indices: 23956353--23956691 Score: 581
Period size: 172 Copynumber: 2.0 Consensus size: 171
23956343 CCGTGTGGTT
* *
23956353 GGCCGTGTGATCAAACATCAGCGTGTGATCGACGAGGCTGGCCATGTGGGCCACACAAGCGTATG
1 GGCCGTGTGATCAAACATCAGCGTGTGATCGACGAGGCTGGCCATATGCGCCACACAAGCGTATG
*
23956418 GGCCTACACGGTGAACCACACGGGCGTGTGAGATTATTGGGCCAGGTCGTGTGATACACATGGCC
66 GGCCTACACGGTGAACCACACGGGCGTGTGAGATTATTGGGCCAGGTCATGTGATACACATGGCC
23956483 AAGGTCATTTTGGGCTGTGTGGGCCACACGGGCATGTCGCC
131 AAGGTCATTTTGGGCTGTGTGGGCCACACGGGCATGTCGCC
*
23956524 GGCCGTGTGATCGAACAT-AGGCGTGTGATCGACGAGGCTGGCCATATGCGCCACACAAGCGTAT
1 GGCCGTGTGATCAAACATCA-GCGTGTGATCGACGAGGCTGGCCATATGCGCCACACAAGCGTAT
* * * *
23956588 GGGCCTACACGGGTGAACCACATGGGCGTTTGGGATTATTGGGCCAGGTCATGTGATCCACATGG
65 GGGCCTACAC-GGTGAACCACACGGGCGTGTGAGATTATTGGGCCAGGTCATGTGATACACATGG
23956653 CCAAGGTCATTTTGGGCTGTGTGGGCCACACGGGCATGT
129 CCAAGGTCATTTTGGGCTGTGTGGGCCACACGGGCATGT
23956692 GGGCCCATTT
Statistics
Matches: 158, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
170 1 0.01
171 69 0.44
172 88 0.56
ACGTcount: A:0.20, C:0.24, G:0.35, T:0.21
Consensus pattern (171 bp):
GGCCGTGTGATCAAACATCAGCGTGTGATCGACGAGGCTGGCCATATGCGCCACACAAGCGTATG
GGCCTACACGGTGAACCACACGGGCGTGTGAGATTATTGGGCCAGGTCATGTGATACACATGGCC
AAGGTCATTTTGGGCTGTGTGGGCCACACGGGCATGTCGCC
Found at i:23960209 original size:3 final size:3
Alignment explanation
Indices: 23960201--23960243 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
23960191 ATACGTCCTT
*
23960201 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
23960244 CCTCCTCCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:23964715 original size:22 final size:22
Alignment explanation
Indices: 23964687--23964730 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
23964677 TGATGAGCGT
23964687 ATGTGTGTATGAAGTATTGTAA
1 ATGTGTGTATGAAGTATTGTAA
23964709 ATGTGTGTATGAAGTATTGTAA
1 ATGTGTGTATGAAGTATTGTAA
23964731 GGTTACTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.27, T:0.41
Consensus pattern (22 bp):
ATGTGTGTATGAAGTATTGTAA
Found at i:23971718 original size:5 final size:6
Alignment explanation
Indices: 23971689--23971743 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
23971679 CCAAAAAATG
* * * *
23971689 AAATAA AAAT-- AACTAA AAATAA AAATAA AAGTAC AACTAAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-AA AAATAA
23971736 AAATAA AA
1 AAATAA AA
23971744 CGATTAGAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
4 3 0.08
6 32 0.82
7 4 0.10
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:23973520 original size:23 final size:24
Alignment explanation
Indices: 23973493--23973539 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
23973483 ATACTTTCAT
23973493 AAAATG-TCAGATGTGGTA-CTTAA
1 AAAATGTTCA-ATGTGGTACCTTAA
*
23973516 AAAATGTTTAATGTGGTACCTTAA
1 AAAATGTTCAATGTGGTACCTTAA
23973540 CTATTACTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (24 bp):
AAAATGTTCAATGTGGTACCTTAA
Found at i:23974129 original size:31 final size:29
Alignment explanation
Indices: 23974064--23974129 Score: 87
Period size: 31 Copynumber: 2.2 Consensus size: 29
23974054 ATTGATAGTT
*
23974064 CAAGTACCACATTGAATATTATCAAAGTA
1 CAAGTACCACATTGAATATTATAAAAGTA
* *
23974093 TAAGTACCACATTGAACATTTTATAAAAGTA
1 CAAGTACCACATTG-A-ATATTATAAAAGTA
23974124 CAAGTA
1 CAAGTA
23974130 TTAAATAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 13 0.42
30 1 0.03
31 17 0.55
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (29 bp):
CAAGTACCACATTGAATATTATAAAAGTA
Found at i:23975715 original size:27 final size:27
Alignment explanation
Indices: 23975680--23975733 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
23975670 TTAATTTTTA
23975680 AAAAATATAAAAATATATTTTAAAATT
1 AAAAATATAAAAATATATTTTAAAATT
*
23975707 AAAATTATAAAAATATATTTTAAAATT
1 AAAAATATAAAAATATATTTTAAAATT
23975734 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
AAAAATATAAAAATATATTTTAAAATT
Found at i:23990071 original size:3 final size:3
Alignment explanation
Indices: 23990063--23990116 Score: 56
Period size: 3 Copynumber: 17.0 Consensus size: 3
23990053 AAAATAAAAC
*
23990063 TAA TAA TAA TTAA TAA TAA TAG TAA TAA TAA TAA -AA TAA TTAA CTAAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA -T-AA
23990111 TAA TAA
1 TAA TAA
23990117 AATTGCTCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
2 2 0.05
3 32 0.73
4 8 0.18
5 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23990081 original size:22 final size:20
Alignment explanation
Indices: 23990053--23990119 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 20
23990043 AAAGATAAGA
23990053 AAAATAAAACTAATAATAATT
1 AAAATAAAACTAATAATAA-T
* *
23990074 AATAATAATAGTAATAATAAT
1 AA-AATAAAACTAATAATAAT
23990095 AAAATAATTAACT-A-AATAAT
1 AAAATAA--AACTAATAATAAT
23990115 AAAAT
1 AAAAT
23990120 TGCTCAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 16 0.41
21 6 0.15
22 17 0.44
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (20 bp):
AAAATAAAACTAATAATAAT
Found at i:23991825 original size:8 final size:10
Alignment explanation
Indices: 23991802--23991826 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23991792 GGGATAAATA
23991802 TATATACTAT
1 TATATACTAT
23991812 TATATACTAT
1 TATATACTAT
23991822 TATAT
1 TATAT
23991827 TTTAATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATACTAT
Found at i:23993992 original size:13 final size:13
Alignment explanation
Indices: 23993974--23993999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23993964 GGAGTTTGTA
23993974 CTTTTAAATGCTT
1 CTTTTAAATGCTT
23993987 CTTTTAAATGCTT
1 CTTTTAAATGCTT
23994000 TTATGTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
CTTTTAAATGCTT
Found at i:23994186 original size:25 final size:25
Alignment explanation
Indices: 23994152--23994199 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
23994142 AAAGACATGT
23994152 TTAGGGTTATGGTCCCCAAATTATA
1 TTAGGGTTATGGTCCCCAAATTATA
**
23994177 TTAGGGTTATGGTTTCCAAATTA
1 TTAGGGTTATGGTCCCCAAATTA
23994200 CACACAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (25 bp):
TTAGGGTTATGGTCCCCAAATTATA
Found at i:23995063 original size:16 final size:16
Alignment explanation
Indices: 23995042--23995086 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
23995032 TATTTGCCAT
23995042 ATTCACTTGAAATTGG
1 ATTCACTTGAAATTGG
23995058 ATTCACTTGAAATTGG
1 ATTCACTTGAAATTGG
23995074 ATTCACTTGAAAT
1 ATTCACTTGAAAT
23995087 ATAGTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (16 bp):
ATTCACTTGAAATTGG
Found at i:24000561 original size:28 final size:26
Alignment explanation
Indices: 24000494--24000567 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
24000484 TATCATTTTA
24000494 TTTAAATATAA-TTTATTATGTTTAAG
1 TTTAAA-ATAATTTTATTATGTTTAAG
* * *
24000520 TTTAAAACATATTTTATGTATTTTTAAT
1 TTTAAAATA-ATTTTAT-TATGTTTAAG
24000548 TTTATAAATAATTTATATTA
1 TTTA-AAATAATTT-TATTA
24000568 ATTAATTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 2 0.05
26 7 0.18
27 5 0.13
28 18 0.46
29 7 0.18
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (26 bp):
TTTAAAATAATTTTATTATGTTTAAG
Found at i:24000562 original size:27 final size:27
Alignment explanation
Indices: 24000501--24000563 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
24000491 TTATTTAAAT
24000501 ATAATTTATTATGTTTAAGTTTAAAAC
1 ATAATTTATTATGTTTAAGTTTAAAAC
* * * *
24000528 ATATTTTATGTATTTTTAATTTTATAA-
1 ATAATTTAT-TATGTTTAAGTTTAAAAC
24000555 ATAATTTAT
1 ATAATTTAT
24000564 ATTAATTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (27 bp):
ATAATTTATTATGTTTAAGTTTAAAAC
Found at i:24000910 original size:31 final size:31
Alignment explanation
Indices: 24000875--24000934 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
24000865 AGTCACTAAC
*
24000875 GTTTTAGATCATTTCTATTTTGGTCACTCCT
1 GTTTTAGATCATTTCTATTTTGATCACTCCT
*
24000906 GTTTTATATCATTTCTATTTTGATCACTC
1 GTTTTAGATCATTTCTATTTTGATCACTC
24000935 TTCGTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.10, T:0.53
Consensus pattern (31 bp):
GTTTTAGATCATTTCTATTTTGATCACTCCT
Found at i:24005652 original size:31 final size:31
Alignment explanation
Indices: 24005557--24005654 Score: 103
Period size: 31 Copynumber: 3.2 Consensus size: 31
24005547 TTGGAATGGA
* * * *
24005557 TACCAAATTGTACATTGAAGCCAAACTCAAG
1 TACCAAATTGAACATAGAAACAAAACTCAAG
*
24005588 TTCCAAATTGAA-A-A-AAACAAACACTCAAG
1 TACCAAATTGAACATAGAAACAAA-ACTCAAG
* *
24005617 TACCAAATTGAACATAGAAACTAAACTTAAG
1 TACCAAATTGAACATAGAAACAAAACTCAAG
24005648 TACCAAA
1 TACCAAA
24005655 CGGTATATTA
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
28 5 0.09
29 18 0.33
30 2 0.04
31 24 0.44
32 6 0.11
ACGTcount: A:0.50, C:0.20, G:0.09, T:0.20
Consensus pattern (31 bp):
TACCAAATTGAACATAGAAACAAAACTCAAG
Found at i:24006698 original size:51 final size:51
Alignment explanation
Indices: 24006628--24006728 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
24006618 AATAAATTTA
* * * *
24006628 ACCCTCAACTTTTATATATTATATCAATTTAATCTTAATTTTAAAAAATTG
1 ACCCTCAACTTTTACATATTATATCAAGTTAATCATAATTCTAAAAAATTG
* *
24006679 ACCCTCAA-TATTTACATATTATCTCAAGTTGATCATAATTCTAAAAAATT
1 ACCCTCAACT-TTTACATATTATATCAAGTTAATCATAATTCTAAAAAATT
24006729 CAAAGAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.42
Consensus pattern (51 bp):
ACCCTCAACTTTTACATATTATATCAAGTTAATCATAATTCTAAAAAATTG
Found at i:24012642 original size:41 final size:41
Alignment explanation
Indices: 24012596--24012820 Score: 198
Period size: 41 Copynumber: 5.4 Consensus size: 41
24012586 CACTAGGTTG
* *
24012596 CAGATAAACTGCCACTGGGTTGTGGGTGCACAACATATTTG
1 CAGATAAACTGCCACTGGGTTGTGGATGCACAACATATTTA
* * * * * * * *
24012637 CAGATAAAAACTGCCATTGGGCTGTAGATGTATAGCAAATTCA
1 CAGAT--AAACTGCCACTGGGTTGTGGATGCACAACATATTTA
* *
24012680 CAGATAAACTGCCACTGGGTTGTGGATACACAAAATATTTA
1 CAGATAAACTGCCACTGGGTTGTGGATGCACAACATATTTA
* * * *
24012721 TAGATAAAAGCTGCCAGTAGGTTGTGGGTGCACAACATATTTA
1 CAGAT-AAA-CTGCCACTGGGTTGTGGATGCACAACATATTTA
** * * * * *
24012764 CAGATAAACTATCACTGGGTTGTGAATGCTCATCAAATTTG
1 CAGATAAACTGCCACTGGGTTGTGGATGCACAACATATTTA
*
24012805 CATATAAACTGCCACT
1 CAGATAAACTGCCACT
24012821 CTTCCTCCGT
Statistics
Matches: 140, Mismatches: 40, Indels: 8
0.74 0.21 0.04
Matches are distributed among these distances:
41 71 0.51
42 6 0.04
43 63 0.45
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (41 bp):
CAGATAAACTGCCACTGGGTTGTGGATGCACAACATATTTA
Found at i:24012744 original size:43 final size:42
Alignment explanation
Indices: 24012596--24012771 Score: 124
Period size: 43 Copynumber: 4.2 Consensus size: 42
24012586 CACTAGGTTG
* * * * *
24012596 CAGAT-AAACTGCCACTGGGTTGTGGGTGCACAACATATTTG
1 CAGATAAAACTGCCACTAGGTTGTGGATACACAAAATATTTA
* * * * ** * * *
24012637 CAGATAAAAACTGCCATTGGGCTGTAGATGTATAGCAA-ATTCA
1 CAGAT-AAAACTGCCACTAGGTTGTGGATACACA-AAATATTTA
*
24012680 CAGAT-AAACTGCCACTGGGTTGTGGATACACAAAATATTTA
1 CAGATAAAACTGCCACTAGGTTGTGGATACACAAAATATTTA
* * * * *
24012721 TAGATAAAAGCTGCCAGTAGGTTGTGGGTGCACAACATATTTA
1 CAGATAAAA-CTGCCACTAGGTTGTGGATACACAAAATATTTA
24012764 CAGATAAA
1 CAGATAAA
24012772 CTATCACTGG
Statistics
Matches: 104, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
40 2 0.02
41 34 0.33
42 3 0.03
43 64 0.62
44 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (42 bp):
CAGATAAAACTGCCACTAGGTTGTGGATACACAAAATATTTA
Found at i:24012767 original size:84 final size:84
Alignment explanation
Indices: 24012596--24012787 Score: 222
Period size: 84 Copynumber: 2.3 Consensus size: 84
24012586 CACTAGGTTG
* * * * * *
24012596 CAGATAAACTGCCACTGGGTTGTGGGTGCACAACATATTTGCAGATAAAAACTGCCATTGGGCTG
1 CAGATAAACTGCCACTGGGTTGTGGATACACAAAATATTTACAGATAAAAACTGCCAGTAGGCTG
* * *
24012661 TAGATGTATAGCAAATTCA
66 TAGATGCACAACAAATTCA
* * *
24012680 CAGATAAACTGCCACTGGGTTGTGGATACACAAAATATTTATAGATAAAAGCTGCCAGTAGGTTG
1 CAGATAAACTGCCACTGGGTTGTGGATACACAAAATATTTACAGATAAAAACTGCCAGTAGGCTG
* * * *
24012745 TGGGTGCACAACATATTTA
66 TAGATGCACAACAAATTCA
**
24012764 CAGATAAACTATCACTGGGTTGTG
1 CAGATAAACTGCCACTGGGTTGTG
24012788 AATGCTCATC
Statistics
Matches: 90, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (84 bp):
CAGATAAACTGCCACTGGGTTGTGGATACACAAAATATTTACAGATAAAAACTGCCAGTAGGCTG
TAGATGCACAACAAATTCA
Found at i:24012923 original size:38 final size:38
Alignment explanation
Indices: 24012896--24012998 Score: 179
Period size: 38 Copynumber: 2.7 Consensus size: 38
24012886 CAATATTAGC
24012896 AGTAGACATGCTTAACATGTACTCAATTCATCACTAAT
1 AGTAGACATGCTTAACATGTACTCAATTCATCACTAAT
* *
24012934 AGTAGACATGTTTAACATGTACTCAATTGATCACTAAT
1 AGTAGACATGCTTAACATGTACTCAATTCATCACTAAT
*
24012972 AGTAAACATGCTTAACATGTACTCAAT
1 AGTAGACATGCTTAACATGTACTCAAT
24012999 AGGGCGGTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (38 bp):
AGTAGACATGCTTAACATGTACTCAATTCATCACTAAT
Found at i:24016585 original size:13 final size:13
Alignment explanation
Indices: 24016578--24016605 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
24016568 TTTTAAGAAG
24016578 ATTCTTTAATCAA
1 ATTCTTTAATCAA
24016591 ATTCTTTAATCAA
1 ATTCTTTAATCAA
24016604 AT
1 AT
24016606 CCTCTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTCTTTAATCAA
Found at i:24021556 original size:19 final size:21
Alignment explanation
Indices: 24021513--24021555 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
24021503 GTAGGCTATT
24021513 TATTATTTTTATAATATTATA
1 TATTATTTTTATAATATTATA
24021534 TATTATTTTTATTAAT-TTATA
1 TATTATTTTTA-TAATATTATA
24021555 T
1 T
24021556 TTTAATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTATTTTTATAATATTATA
Found at i:24021684 original size:61 final size:62
Alignment explanation
Indices: 24021530--24021702 Score: 240
Period size: 61 Copynumber: 2.8 Consensus size: 62
24021520 TTTATAATAT
* * * *
24021530 TATATATTATTTTTATTAATTTATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATA
1 TATATTTTATTTTTATTAAATTATA-TTTAATAATAATTATATTAA-AATATGATTAAATTATA
* *
24021594 TATTTTTTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAAATTATT
1 TATATTTTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAAATTATA
* **
24021656 TA-ATTTTATTTTTATTAAATTACATTTAATAATAATCCTATTAAAAT
1 TATATTTTATTTTTATTAAATTATATTTAATAATAATTATATTAAAAT
24021703 TTAATAACAA
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
61 41 0.41
62 16 0.16
63 20 0.20
64 22 0.22
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (62 bp):
TATATTTTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAAATTATA
Found at i:24022175 original size:19 final size:18
Alignment explanation
Indices: 24022151--24022213 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
24022141 TTCTTTAGAT
*
24022151 TTTTTTTAAATTATTATAA
1 TTTTTTTAAATAATT-TAA
* * *
24022170 TTTTTTAAAAAAATTGGAA
1 TTTTTTTAAATAATT-TAA
*
24022189 TTTTTATAAATAATTTAA
1 TTTTTTTAAATAATTTAA
24022207 TTTTTTT
1 TTTTTTT
24022214 TTTGTAATTT
Statistics
Matches: 34, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
18 8 0.24
19 26 0.76
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTTTTAAATAATTTAA
Found at i:24022212 original size:20 final size:20
Alignment explanation
Indices: 24022116--24022213 Score: 53
Period size: 19 Copynumber: 5.0 Consensus size: 20
24022106 ATTATTATTT
* *
24022116 TAAATATTTTAACTTTCTTTA
1 TAAATAATTTAA-TTTTTTTA
* **
24022137 TATATTCTTTAGATTTTTTT-
1 TAAATAATTTA-ATTTTTTTA
*
24022157 TAAATTATTATAA-TTTTTTA
1 TAAATAATT-TAATTTTTTTA
* *
24022177 -AAAAAATTGGAA--TTTTTA
1 TAAATAATT-TAATTTTTTTA
24022195 TAAATAATTTAATTTTTTT
1 TAAATAATTTAATTTTTTT
24022214 TTTGTAATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 13
0.70 0.14 0.15
Matches are distributed among these distances:
18 8 0.14
19 21 0.36
20 13 0.22
21 16 0.27
22 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
TAAATAATTTAATTTTTTTA
Found at i:24028747 original size:19 final size:19
Alignment explanation
Indices: 24028720--24028798 Score: 59
Period size: 21 Copynumber: 3.9 Consensus size: 19
24028710 ATATTTTCTT
*
24028720 AAAAAATTATTTAAAAATC
1 AAAAAATTATATAAAAATC
* *
24028739 AAAATATTATATAAAAATTT
1 AAAAAATTATATAAAAA-TC
* ** *
24028759 AAAAAATATAAATATAATTTT
1 AAAAAAT-TATATA-AAAATC
24028780 AAAAATATTATATAAAAAT
1 AAAAA-ATTATATAAAAAT
24028799 TGAATTTTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
19 15 0.33
20 10 0.22
21 17 0.37
22 4 0.09
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAAATTATATAAAAATC
Found at i:24028861 original size:22 final size:25
Alignment explanation
Indices: 24028827--24028871 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
24028817 TGTTATTTTT
24028827 TTCAGAAACTATA-AATTCTAAAAA
1 TTCAGAAACTATATAATTCTAAAAA
*
24028851 TTCA-AAA-TATATATTTCTAAA
1 TTCAGAAACTATATAATTCTAAA
24028872 TTTCCAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (25 bp):
TTCAGAAACTATATAATTCTAAAAA
Found at i:24029331 original size:30 final size:29
Alignment explanation
Indices: 24029247--24029332 Score: 111
Period size: 30 Copynumber: 2.9 Consensus size: 29
24029237 ATTTTATAGA
* *
24029247 ATATTTTGATTTTTTAAAATTTATACATAT
1 ATATTTTTATTTTTTAAAATTTTTA-ATAT
*
24029277 ATATTTTTATTTTTTAAAAATTTTAATTAT
1 ATATTTTTATTTTTTAAAATTTTTAA-TAT
24029307 ATATTTTT-TATTTTTAAAATTTTTAA
1 ATATTTTTAT-TTTTTAAAATTTTTAA
24029333 AATTTTTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.04
30 48 0.96
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (29 bp):
ATATTTTTATTTTTTAAAATTTTTAATAT
Found at i:24031000 original size:42 final size:42
Alignment explanation
Indices: 24030934--24031071 Score: 150
Period size: 44 Copynumber: 3.2 Consensus size: 42
24030924 CTGTTGACAG
* *
24030934 CGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTTAAAAAA
1 CGCCACTAAAGGTCATGACCTTTAGCGGCGCTTTTTAAAAAA
* * * *
24030976 CGCCACTAAAGGTCAGGACCTTTAGCGACGCTTTTATTACAAA
1 CGCCACTAAAGGTCATGACCTTTAGCGGCGCTTTT-TAAAAAA
* * ***
24031019 CGCCGCTAAAAGATCATGACCTTTAGCGGCGCTTCTGCCAAAAA
1 CGCCACT-AAAGGTCATGACCTTTAGCGGCGCTT-TTTAAAAAA
24031063 CGCCACTAA
1 CGCCACTAA
24031072 TGACCTTTGG
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 31 0.40
43 13 0.17
44 33 0.42
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
CGCCACTAAAGGTCATGACCTTTAGCGGCGCTTTTTAAAAAA
Found at i:24031052 original size:44 final size:42
Alignment explanation
Indices: 24030934--24031052 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 42
24030924 CTGTTGACAG
*
24030934 CGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTTAAAAAA
1 CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTAAAAAA
* * * * *
24030976 CGCCACTAAAGGTCAGGACCTTTAGCGACGCTTTTATTACAAA
1 CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTT-TAAAAAA
*
24031019 CGCCGCTAAAAGATCATGACCTTTAGCGGCGCTT
1 CGCCGCT-AAAGGTCATGACCTTTAGCGGCGCTT
24031053 CTGCCAAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 31 0.48
43 11 0.17
44 23 0.35
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (42 bp):
CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTAAAAAA
Found at i:24032609 original size:13 final size:13
Alignment explanation
Indices: 24032571--24032613 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
24032561 GCTCAATGCA
*
24032571 AAATTGTAATTTT
1 AAATTCTAATTTT
* * *
24032584 GAATTTTATTTTT
1 AAATTCTAATTTT
24032597 AAATTCTAATTTT
1 AAATTCTAATTTT
24032610 AAAT
1 AAAT
24032614 CAAAATAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (13 bp):
AAATTCTAATTTT
Found at i:24035735 original size:147 final size:144
Alignment explanation
Indices: 24035476--24035762 Score: 423
Period size: 147 Copynumber: 2.0 Consensus size: 144
24035466 ATTATTTCAC
* *
24035476 TATAAAATGGGGCTATTGTTTTAAAGTAAATTTTTTTGTGGCATTTTTTATAAAAACGCCGTTAT
1 TATAAAATGGGGCTATTGTTTTAAAGTAAATTTTTTTGTGGCATTTTTTAGAAAAACGCCGCTAT
* *
24035541 TGCTTACCTTTTGCGGCGTTTTTCATAAAAAACGCCGCAAAATTTATTTAATTCGAAATAAAACG
66 TGCTTACATTTTGCGGCGTTTTTCATAAAAAACGCCGCAAAAATTATTTAATTCGAAATAAAACG
*
24035606 ACATTGTTTTATTA
131 ACACTGTTTTATTA
* * *
24035620 TATAAAATGGTGCTATTTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTAGAAAAACGCCGC
1 TATAAAATGGGGCTATTGTTTTAAAGT-AAA-T-TTTTTTGTGGCATTTTTTAGAAAAACGCCGC
* * * *
24035685 TATTGCTTACATTTTGCGGCGTTTTTTAT-AAAAACGCCGCAAAAAATTATTTCATTTGGAATAA
63 TATTGCTTACATTTTGCGGCGTTTTTCATAAAAAACGCCGC-AAAAATTATTTAATTCGAAATAA
24035749 AACGACACTGTTTT
127 AACGACACTGTTTT
24035763 GCTATGCTAA
Statistics
Matches: 127, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
144 25 0.20
145 3 0.02
146 12 0.09
147 87 0.69
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.41
Consensus pattern (144 bp):
TATAAAATGGGGCTATTGTTTTAAAGTAAATTTTTTTGTGGCATTTTTTAGAAAAACGCCGCTAT
TGCTTACATTTTGCGGCGTTTTTCATAAAAAACGCCGCAAAAATTATTTAATTCGAAATAAAACG
ACACTGTTTTATTA
Found at i:24036447 original size:6 final size:7
Alignment explanation
Indices: 24036406--24036460 Score: 65
Period size: 7 Copynumber: 7.9 Consensus size: 7
24036396 CACTAACTTT
*
24036406 TAACCTC
1 TAACCCC
24036413 TAACCCC
1 TAACCCC
**
24036420 TAACTAC
1 TAACCCC
24036427 TAACCCC
1 TAACCCC
*
24036434 CAACCCC
1 TAACCCC
*
24036441 CAACCCC
1 TAACCCC
24036448 TAACCCC
1 TAACCCC
24036455 TAACCC
1 TAACCC
24036461 ATAAACATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.31, C:0.55, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:24036704 original size:16 final size:15
Alignment explanation
Indices: 24036683--24036719 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
24036673 AATTAACCAT
24036683 ATATATACACTAAACC
1 ATATATAC-CTAAACC
24036699 ATATAT-CCTAAACC
1 ATATATACCTAAACC
24036713 ATATATA
1 ATATATA
24036720 TTAAACCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 13 0.65
15 1 0.05
16 6 0.30
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (15 bp):
ATATATACCTAAACC
Done.