Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 85 of 172
Found at i:24320193 original size:15 final size:15
Alignment explanation
Indices: 24320157--24320198 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
24320147 ATATTATCTA
24320157 TATCTTATATC-TA-
1 TATCTTATATCTTAT
*
24320170 TGT-TTATATCTTAT
1 TATCTTATATCTTAT
24320184 TATCTTATATCTTAT
1 TATCTTATATCTTAT
24320199 ATTATCTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 7 0.29
13 4 0.17
14 2 0.08
15 11 0.46
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (15 bp):
TATCTTATATCTTAT
Found at i:24320203 original size:17 final size:17
Alignment explanation
Indices: 24320147--24320206 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
24320137 TTTTGAGGAA
24320147 ATATTATC-TATATCTT
1 ATATTATCTTATATCTT
*
24320163 ATATCTATGTTTATATC-T
1 ATAT-TAT-CTTATATCTT
24320181 -TATTATCTTATATCTT
1 ATATTATCTTATATCTT
24320197 ATATTATCTT
1 ATATTATCTT
24320207 CATCTAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
15 7 0.19
16 8 0.22
17 15 0.41
18 1 0.03
19 6 0.16
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (17 bp):
ATATTATCTTATATCTT
Found at i:24321587 original size:27 final size:27
Alignment explanation
Indices: 24321556--24321846 Score: 350
Period size: 27 Copynumber: 10.8 Consensus size: 27
24321546 TCATCTCTTA
24321556 AGGGTATTTCGGTCATTTTACCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* * * * * *
24321583 GGGGTATTTTGATCATTCTATCCTTTG
1 AGGGTATTTCGGTCATTTTACCCTATG
* *
24321610 GGGGTATTTGGGTCATTTTACCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* * *
24321637 AGGGTATTTCAGTCATTCTATCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* * * *
24321664 GGGGTATTTTGATCATTTTACCCCATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* * *
24321691 GGGGTATTTCGATCATTTTATCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* *
24321718 AGGGTATTTCGGTTATTTTACCATATG
1 AGGGTATTTCGGTCATTTTACCCTATG
24321745 AGGGTATTTCGGTCA-TTTACCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* *
24321771 AGGGTATTTTGGTTATTTTACCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
* * *
24321798 AGGGTATTTTGGTTATGTTACCCTATG
1 AGGGTATTTCGGTCATTTTACCCTATG
24321825 AGGGTATTTCGGTCATTTTACC
1 AGGGTATTTCGGTCATTTTACC
24321847 TATTTTGGAG
Statistics
Matches: 224, Mismatches: 39, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
26 23 0.10
27 201 0.90
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.43
Consensus pattern (27 bp):
AGGGTATTTCGGTCATTTTACCCTATG
Found at i:24338212 original size:39 final size:40
Alignment explanation
Indices: 24338076--24338204 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
24338066 GGTGTTTGGA
* *
24338076 TAAAAATGCTACTAAAAATCAAGCATTAGCGGCGCTTTTC
1 TAAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTC
* * **
24338116 TACAAACGCCACTAAAGATGGAGCATTAGCGGCGCTTTT-
1 TAAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTC
* *
24338155 TGGAAAACGCCACTAAAAAT-AAGCATTAGCGGTG-TTTTC
1 T-AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTC
24338194 TAAAAAGCGCC
1 TAAAAA-CGCC
24338205 GCAAAAAACC
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
38 8 0.11
39 18 0.24
40 48 0.65
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (40 bp):
TAAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTC
Found at i:24338309 original size:41 final size:41
Alignment explanation
Indices: 24338262--24338488 Score: 312
Period size: 41 Copynumber: 5.5 Consensus size: 41
24338252 TTTAGCGAAG
*
24338262 TTTTTGAAAAAGCGCCGCTAATGATCGGGCCTTTAGCGGCA
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
* * *
24338303 TTTTTGAAGAAGCGCCGCTAATGCTCGGGCCATTAGCGGCG
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
* ** *
24338344 TTTTTGAAAATA-CGCCTCTAATGCTCGTTCCTTTAGTGGCA
1 TTTTTGAAAA-AGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
* *
24338385 TTTTTGAAAAAGCGCCGCTAATGCTTGGGCCTTTAGCGGCG
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
* * *
24338426 TTTTTGAAAGAGCGCCGCTAATGCACGGGCCTTTAGCGGCC
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
*
24338467 TTTTTGAGAAAGCGCCGCTAAT
1 TTTTTGAAAAAGCGCCGCTAAT
24338489 CATAAAAAAA
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 1 0.01
41 159 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (41 bp):
TTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
Found at i:24338488 original size:123 final size:123
Alignment explanation
Indices: 24338262--24338488 Score: 350
Period size: 123 Copynumber: 1.8 Consensus size: 123
24338252 TTTAGCGAAG
24338262 TTTTTGAAAAAGCGCCGCTAATGATCGGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGC
1 TTTTTGAAAAAGCGCCGCTAATGATCGGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGC
* * *
24338327 TCGGGCCATTAGCGGCGTTTTTGAAAATACGCCTCTAATGCTCGTTCCTTTAGTGGCA
66 ACGGGCCATTAGCGGCCTTTTTGAAAATACGCCGCTAATGCTCGTTCCTTTAGTGGCA
* * *
24338385 TTTTTGAAAAAGCGCCGCTAATGCTTGGGCCTTTAGCGGCGTTTTTGAA-AGAGCGCCGCTAATG
1 TTTTTGAAAAAGCGCCGCTAATGATCGGGCCTTTAGCGGCATTTTTGAAGA-AGCGCCGCTAATG
* *
24338449 CACGGGCCTTTAGCGGCCTTTTTGAGAAA-GCGCCGCTAAT
65 CACGGGCCATTAGCGGCCTTTTTGA-AAATACGCCGCTAAT
24338489 CATAAAAAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
122 1 0.01
123 90 0.96
124 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (123 bp):
TTTTTGAAAAAGCGCCGCTAATGATCGGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGC
ACGGGCCATTAGCGGCCTTTTTGAAAATACGCCGCTAATGCTCGTTCCTTTAGTGGCA
Found at i:24339041 original size:38 final size:38
Alignment explanation
Indices: 24338997--24339070 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 38
24338987 GGATTTAAGG
*
24338997 TTTAAGGGTTAAG-GGTTATGCTTTAGGGGTTAGGGGGA
1 TTTAAGGGTT-AGTGGCTATGCTTTAGGGGTTAGGGGGA
24339035 TTTAAGGGTTAGTGGCTATGCTTTAGGGGTTAGGGG
1 TTTAAGGGTTAGTGGCTATGCTTTAGGGGTTAGGGG
24339071 TTTAGGGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 2 0.06
38 32 0.94
ACGTcount: A:0.19, C:0.04, G:0.42, T:0.35
Consensus pattern (38 bp):
TTTAAGGGTTAGTGGCTATGCTTTAGGGGTTAGGGGGA
Found at i:24339474 original size:19 final size:18
Alignment explanation
Indices: 24339435--24339474 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24339425 ATATAAGAAA
*
24339435 AAATAAAATAAAAAATAT
1 AAATAAAATAAAAAAGAT
*
24339453 AAATCAAATAAAAAAGACT
1 AAATAAAATAAAAAAGA-T
24339472 AAA
1 AAA
24339475 ATTTATACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATAAAATAAAAAAGAT
Found at i:24340277 original size:37 final size:38
Alignment explanation
Indices: 24340235--24340329 Score: 131
Period size: 38 Copynumber: 2.5 Consensus size: 38
24340225 AGATTTAAAG
* *
24340235 TTTAGGGGGTAGGGGTTATGC-TTAGGGGTTA-GGAGGA
1 TTTAGGGGTTAGGGGTTATGCTTTAAGGGTTATGG-GGA
*
24340272 TTTAGGGGTTAAGGGTTATGCTTTAAGGGTTATGGGGA
1 TTTAGGGGTTAGGGGTTATGCTTTAAGGGTTATGGGGA
*
24340310 TTTAGAGGTTAGGGGTTATG
1 TTTAGGGGTTAGGGGTTATG
24340330 GATTTGGGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
37 19 0.37
38 30 0.59
39 2 0.04
ACGTcount: A:0.20, C:0.02, G:0.43, T:0.35
Consensus pattern (38 bp):
TTTAGGGGTTAGGGGTTATGCTTTAAGGGTTATGGGGA
Found at i:24340340 original size:38 final size:37
Alignment explanation
Indices: 24340235--24340340 Score: 124
Period size: 38 Copynumber: 2.8 Consensus size: 37
24340225 AGATTTAAAG
* *
24340235 TTTAGGGGGTAGGGGTTATGCTTAGGGGTTAGGAGGA
1 TTTAGGGGTTAGGGGTTATGCTTTGGGGTTAGGAGGA
* *
24340272 TTTAGGGGTTAAGGGTTATGCTTTAAGGGTTATGG-GGA
1 TTTAGGGGTTAGGGGTTATGCTTT-GGGGTTA-GGAGGA
* *
24340310 TTTAGAGGTTAGGGGTTATGGATTTGGGGTT
1 TTTAGGGGTTAGGGGTTAT-GCTTTGGGGTT
24340341 TAGGGTTTAG
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
37 21 0.36
38 31 0.53
39 6 0.10
ACGTcount: A:0.19, C:0.02, G:0.43, T:0.36
Consensus pattern (37 bp):
TTTAGGGGTTAGGGGTTATGCTTTGGGGTTAGGAGGA
Found at i:24343078 original size:29 final size:29
Alignment explanation
Indices: 24343013--24343078 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
24343003 ATTTTTGTAA
24343013 AAATAATATGATTTATATTTGATTTATTG
1 AAATAATATGATTTATATTTGATTTATTG
* *
24343042 ATATTAATATTATTT-TATTTG-TTTAATTTG
1 A-AATAATATGATTTATATTTGATTT-A-TTG
24343072 AAATAAT
1 AAATAAT
24343079 TATATAGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 3 0.10
29 13 0.42
30 15 0.48
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.55
Consensus pattern (29 bp):
AAATAATATGATTTATATTTGATTTATTG
Found at i:24343238 original size:44 final size:44
Alignment explanation
Indices: 24343189--24343304 Score: 196
Period size: 44 Copynumber: 2.6 Consensus size: 44
24343179 CAAAATTAGT
* *
24343189 GGCGTTTTTAGAAAAAGCGCCGCTAAAGGTCACCAAACAATAGC
1 GGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCACCAAACAATAGC
*
24343233 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACCAAACAATAGC
1 GGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCACCAAACAATAGC
*
24343277 GGCGTTTGTGGAAAAAGCGCCGCGAAAG
1 GGCGTTTGTGGAAAAAGCGCCGCTAAAG
24343305 AACATGACCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.16
Consensus pattern (44 bp):
GGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCACCAAACAATAGC
Found at i:24343320 original size:43 final size:43
Alignment explanation
Indices: 24343229--24343450 Score: 291
Period size: 43 Copynumber: 5.1 Consensus size: 43
24343219 CACCAAACAA
* ** ** * **
24343229 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACCAAACAA
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACA-TGACCTT
* * *
24343273 TAGCGGCGTTTGTGGAAAAAGCGCCGCGAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACATGACCTT
* *
24343316 TAGCGGCATTTGTGGGAATAGCACCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACATGACCTT
*
24343359 TAGCGGCGTTTGTAGGAAAAGCACCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACATGACCTT
* *
24343402 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACATGACCTT
24343445 TAGCGG
1 TAGCGG
24343451 TTAGCGACGT
Statistics
Matches: 158, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 126 0.80
44 32 0.20
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGAACATGACCTT
Found at i:24343974 original size:21 final size:22
Alignment explanation
Indices: 24343925--24343974 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
24343915 TTTACAAAGT
*
24343925 TATAATATTTTTTTTATGAATA
1 TATAATATTATTTTTATGAATA
**
24343947 -AGCATATTATTTTTAT-AATA
1 TATAATATTATTTTTATGAATA
24343967 TATAATAT
1 TATAATAT
24343975 GAACACGTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TATAATATTATTTTTATGAATA
Found at i:24350166 original size:21 final size:22
Alignment explanation
Indices: 24350117--24350166 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
24350107 GATCAAATGA
*
24350117 GAGAAAAAGAAAAGAGCGAAAAT
1 GAGAAAAAGAAAAGA-CAAAAAT
*
24350140 -A-CAAAAGAAAAGA-AAAAAT
1 GAGAAAAAGAAAAGACAAAAAT
24350159 GAGAAAAA
1 GAGAAAAA
24350167 TAAATAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
19 5 0.23
20 1 0.05
21 15 0.68
22 1 0.05
ACGTcount: A:0.72, C:0.04, G:0.20, T:0.04
Consensus pattern (22 bp):
GAGAAAAAGAAAAGACAAAAAT
Found at i:24354519 original size:24 final size:25
Alignment explanation
Indices: 24354490--24354548 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 25
24354480 TGGTCTATTA
**
24354490 CGTACCAAAATTTCCA-TACCATTT
1 CGTACCAAAATCCCCATTACCATTT
24354514 CGTACC-AAA-CCCCATTACCATTT
1 CGTACCAAAATCCCCATTACCATTT
*
24354537 TGTACCAAAATC
1 CGTACCAAAATC
24354549 AAAATTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 3 0.10
23 16 0.55
24 9 0.31
25 1 0.03
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (25 bp):
CGTACCAAAATCCCCATTACCATTT
Found at i:24357249 original size:23 final size:23
Alignment explanation
Indices: 24357221--24357270 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
24357211 ACCTCTTTTC
* *
24357221 TGAATGAAACTTAGCAGATCCAT
1 TGAATGAAACATAGCAGACCCAT
*
24357244 TGAATGAAACATAGTAGACCCAT
1 TGAATGAAACATAGCAGACCCAT
24357267 TGAA
1 TGAA
24357271 CATAACATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (23 bp):
TGAATGAAACATAGCAGACCCAT
Found at i:24363740 original size:5 final size:5
Alignment explanation
Indices: 24363730--24363785 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
24363720 ATTAACATGC
24363730 AAATA AAATA AAATA AAATA AAATA AGTAATAA ATAATA CAAAT- AAAT-
1 AAATA AAATA AAATA AAATA AAATA A--AAT-A A-AATA -AAATA AAATA
24363778 AAATA AAA
1 AAATA AAA
24363786 ATTGGGTTGC
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
4 8 0.17
5 24 0.52
6 4 0.09
7 8 0.17
8 2 0.04
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:24363777 original size:24 final size:23
Alignment explanation
Indices: 24363730--24363787 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
24363720 ATTAACATGC
*
24363730 AAATAAAATAAAATAAAATAAAAT
1 AAATAAAA-ATAATAAAATAAAAT
*
24363754 AAGTAATAAATAATACAAAT-AAAT
1 AAATAA-AAATAATA-AAATAAAAT
24363778 AAATAAAAAT
1 AAATAAAAAT
24363788 TGGGTTGCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 4 0.14
24 19 0.66
25 6 0.21
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (23 bp):
AAATAAAAATAATAAAATAAAAT
Found at i:24372239 original size:45 final size:43
Alignment explanation
Indices: 24372190--24372316 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
24372180 CCCAGCGCTG
24372190 GTCGATGAAATTGAAAAATATTATATAAATATGTGCCCAGCACAA
1 GTCGATGAAA-TGAAAAATATTATAT-AATATGTGCCCAGCACAA
* * * * **
24372235 GTCGAAGAAATCAACAATTATTATAT-ATATATGCCCAGCACTG
1 GTCGATGAAATGAA-AAATATTATATAATATGTGCCCAGCACAA
* *
24372278 GTTGATGAAAGTGACAAATATTATATATATATGTGCCCA
1 GTCGATGAAA-TGAAAAATATTATATA-ATATGTGCCCA
24372317 ACACTGGTAG
Statistics
Matches: 66, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
43 32 0.48
44 5 0.08
45 29 0.44
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (43 bp):
GTCGATGAAATGAAAAATATTATATAATATGTGCCCAGCACAA
Found at i:24372322 original size:45 final size:44
Alignment explanation
Indices: 24372179--24372443 Score: 194
Period size: 45 Copynumber: 5.9 Consensus size: 44
24372169 AAAGTTTTAC
* * *
24372179 GCCCAGCGCTGGTCGATGAAATTGAA-AAATATTATATAAATATGT
1 GCCCAGCACTGGTTGATGAAA-T-AACAAATATTATATATATATGT
** * * *
24372224 GCCCAGCACAAGTCGAAGAAATCAACAATTATTATATATATA--T
1 GCCCAGCACTGGTTGATGAAAT-AACAAATATTATATATATATGT
*
24372267 GCCCAGCACTGGTTGATGAAAGTGACAAATATTATATATATATGT
1 GCCCAGCACTGGTTGATGAAA-TAACAAATATTATATATATATGT
* * * * *
24372312 GCCCAACACTGGTAGGTGAAACAACAAATATTATATATATGTGT
1 GCCCAGCACTGGTTGATGAAATAACAAATATTATATATATATGT
* * * * * * * * *
24372356 GTCCAGCACTAGCTGGTGAAACCAATAAATAATATATATGTGTGT
1 GCCCAGCACTGGTTGATGAAA-TAACAAATATTATATATATATGT
* * * * *
24372401 GTCCAACACTGGTTGGTGAAACCAACAAATAATAGTATATATA
1 GCCCAGCACTGGTTGATGAAA-TAACAAATATTA-TATATATA
24372444 CCCTATACCT
Statistics
Matches: 181, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
43 35 0.19
44 40 0.22
45 100 0.55
46 6 0.03
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (44 bp):
GCCCAGCACTGGTTGATGAAATAACAAATATTATATATATATGT
Found at i:24372386 original size:89 final size:89
Alignment explanation
Indices: 24372205--24372442 Score: 228
Period size: 89 Copynumber: 2.7 Consensus size: 89
24372195 TGAAATTGAA
* * ** * ** * *
24372205 AAATATTATATAAATATGTGCCCAGCACAAGTCGAAGAAATCAACAATTATTATATATA-TATGC
1 AAATATTATATATATATGTGCCCAACACTGGTAGGTGAAACCAACAAATATTATATATATTATGC
* * ***
24372269 CCAGCACTGGTTGATGAAAGTGAC
66 CCAGCACTAGCTGATGAAACCAAC
*
24372293 AAATATTATATATATATGTGCCCAACACTGGTAGGTGAAA-CAACAAATATTATATATATGTGTG
1 AAATATTATATATATATGTGCCCAACACTGGTAGGTGAAACCAACAAATATTATATATAT-TATG
* * *
24372357 TCCAGCACTAGCTGGTGAAACCAAT
65 CCCAGCACTAGCTGATGAAACCAAC
* * * * * *
24372382 AAATAATATATATGTGTGTGTCCAACACTGGTTGGTGAAACCAACAAATAATAGTATATAT
1 AAATATTATATATATATGTGCCCAACACTGGTAGGTGAAACCAACAAATATTA-TATATAT
24372443 ACCCTATACC
Statistics
Matches: 123, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
87 17 0.14
88 33 0.27
89 55 0.45
90 11 0.09
91 7 0.06
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (89 bp):
AAATATTATATATATATGTGCCCAACACTGGTAGGTGAAACCAACAAATATTATATATATTATGC
CCAGCACTAGCTGATGAAACCAAC
Found at i:24380061 original size:50 final size:50
Alignment explanation
Indices: 24379946--24380138 Score: 242
Period size: 50 Copynumber: 3.8 Consensus size: 50
24379936 GATAATAACA
* * * * ** *
24379946 TGCCAAAGCCATATCTCAAACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* **
24379997 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
24380047 TGCCAACACTATGTCCCAAACATGGTCTTACATGGGACCTCTAATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
24380097 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
24380139 TCACCCAAAT
Statistics
Matches: 122, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 91 0.75
51 31 0.25
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:24380781 original size:17 final size:17
Alignment explanation
Indices: 24380756--24380789 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24380746 ATCAAAATAA
*
24380756 ACATTTTTCACCTATGG
1 ACATCTTTCACCTATGG
*
24380773 ACATCTTTCAGCTATGG
1 ACATCTTTCACCTATGG
24380790 TCTTACTCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (17 bp):
ACATCTTTCACCTATGG
Found at i:24388917 original size:57 final size:58
Alignment explanation
Indices: 24388822--24388945 Score: 196
Period size: 57 Copynumber: 2.2 Consensus size: 58
24388812 AAAATTTGTA
*
24388822 GGAAATGATTATGGTTTTCTCCAAAATGAAAATGAAAATGGAGAAAAATGAATCATTT
1 GGAAATGAATATGGTTTTCTCCAAAATGAAAATGAAAATGGAGAAAAATGAATCATTT
* * *
24388880 GGAAATGAATGTGGTTTTCT-TAAAATGAAAATGAAAATGGAGAAAATTGAATCATTT
1 GGAAATGAATATGGTTTTCTCCAAAATGAAAATGAAAATGGAGAAAAATGAATCATTT
*
24388937 AGAAATGAA
1 GGAAATGAA
24388946 CAAGTAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
57 43 0.70
58 18 0.30
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.29
Consensus pattern (58 bp):
GGAAATGAATATGGTTTTCTCCAAAATGAAAATGAAAATGGAGAAAAATGAATCATTT
Found at i:24394921 original size:18 final size:17
Alignment explanation
Indices: 24394898--24394931 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24394888 ATATAATTAA
24394898 ATGATAACTATTTATTTT
1 ATGAT-ACTATTTATTTT
*
24394916 ATGATATTATTTATTT
1 ATGATACTATTTATTT
24394932 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (17 bp):
ATGATACTATTTATTTT
Found at i:24395428 original size:27 final size:27
Alignment explanation
Indices: 24395398--24395449 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
24395388 GATTTTTGAA
24395398 ATGTGACACCCTGTATTTTTAAGGATC
1 ATGTGACACCCTGTATTTTTAAGGATC
**
24395425 ATGTGACGTCCTGTATTTTTAAGGA
1 ATGTGACACCCTGTATTTTTAAGGA
24395450 GGTCCCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (27 bp):
ATGTGACACCCTGTATTTTTAAGGATC
Found at i:24396870 original size:96 final size:92
Alignment explanation
Indices: 24396674--24396862 Score: 251
Period size: 96 Copynumber: 2.0 Consensus size: 92
24396664 AGGGTTTAAC
* * * *
24396674 GTTTATGGTTACTTGAGTAAATTAATTATAAATTTTAAAAAATTAGATTAGGGTTTTGTGTTTAG
1 GTTTAAGGTTACTTGAATAAATTAATTATAAATTTTAAAAAATTAGATTAAGGTTTAGTG--T-G
24396739 AATTTTTAAGAAAAAAATCAAATAAATTAGG
63 -ATTTTTAAGAAAAAAATCAAATAAATTAGG
24396770 GTTTAAGGTTACTTGAATAAATTAATTATAAATTTTAAAAAATTTAGATTAAGGTTTAG-G-G-T
1 GTTTAAGGTTACTTGAATAAATTAATTATAAATTTTAAAAAA-TTAGATTAAGGTTTAGTGTGAT
* *
24396832 TTTTAAG-GAAAAATTAAATAAATTAGG
65 TTTTAAGAAAAAAATCAAATAAATTAGG
24396859 GTTT
1 GTTT
24396863 GTGGTTTAGG
Statistics
Matches: 86, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
89 22 0.26
90 8 0.09
92 1 0.01
96 41 0.48
97 14 0.16
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.41
Consensus pattern (92 bp):
GTTTAAGGTTACTTGAATAAATTAATTATAAATTTTAAAAAATTAGATTAAGGTTTAGTGTGATT
TTTAAGAAAAAAATCAAATAAATTAGG
Found at i:24397259 original size:126 final size:126
Alignment explanation
Indices: 24396920--24397324 Score: 524
Period size: 126 Copynumber: 3.2 Consensus size: 126
24396910 AAAAGTTTCA
* * * * * * *
24396920 ACGTGGCCACTCTTTTGCTATAGTAGTTCCTGAAAAAATAATTTTAAGAAAACGTTTCTGAGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAGCAA
* * * * * ** * * * *
24396985 ATAATGTTAAAAATGTTTTAAATAGGATACATTGTCAGCAAAAGTACTAAAAAAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * *
24397046 ATGTAGACACTGTTTTGCTACAGTAGTTTTTG-AAAAATAATTTTGAGAAGATGTTTCTGAGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAGCAA
*
24397110 ATAGTGTCAAAAACACTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
24397171 ACATGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTAAGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAGCAA
* * *
24397236 ATAGTGTCAAAAACGCTTCAAGCAGGATGTAATGTCAACAAAAGAACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
24397297 ACGTGAACGCTCTTTTGCTACAATAGTT
1 ACGTGGACGCTCTTTTGCTACAGTAGTT
24397325 CCTATTTGGC
Statistics
Matches: 242, Mismatches: 36, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
125 104 0.43
126 138 0.57
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:24398793 original size:43 final size:43
Alignment explanation
Indices: 24398727--24398931 Score: 293
Period size: 43 Copynumber: 4.8 Consensus size: 43
24398717 ATGATAAAAA
* * *
24398727 AAACACCGCTAAAGAACATGATCTTTAGCGACGCTTTACCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTACCCAC
* *
24398770 AAACGCCGCTAAAGAACATGATCTTTAGCGGTGCTTTACCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTACCCAC
* * *
24398813 AAACGTCGCTAAAAAACATGATCTTTAACGGCGCTTTACTCAC
1 AAACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTACCCAC
* * *
24398856 AAATGCCGATAAAGAACATGATCTTTAACGGCGCTTTACTCAC
1 AAACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTACCCAC
* *
24398899 AAACGCCGCTAAACAACATGACCTTTAACGGCG
1 AAACGCCGCTAAAGAACATGATCTTTAACGGCG
24398932 TTTTTGGTAA
Statistics
Matches: 146, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTACCCAC
Found at i:24401918 original size:38 final size:39
Alignment explanation
Indices: 24401830--24401918 Score: 110
Period size: 38 Copynumber: 2.3 Consensus size: 39
24401820 CCTATATCCC
* *
24401830 TAACCCATAACCCCTAAATCCCCCTTAACCCTTAAAATA
1 TAACCCATAACCCCTAAATCCCCCTTAACCCCTAAAACA
* *
24401869 TAA-CCATTAACCCCTAAATCCCTC-TAACCCCTAAAGCA
1 TAACCCA-TAACCCCTAAATCCCCCTTAACCCCTAAAACA
*
24401907 TAACCCCTAACC
1 TAACCCATAACC
24401919 TTTAAACCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
38 22 0.51
39 21 0.49
ACGTcount: A:0.37, C:0.40, G:0.01, T:0.21
Consensus pattern (39 bp):
TAACCCATAACCCCTAAATCCCCCTTAACCCCTAAAACA
Found at i:24402294 original size:73 final size:74
Alignment explanation
Indices: 24402149--24402320 Score: 247
Period size: 73 Copynumber: 2.3 Consensus size: 74
24402139 AGCATTAGCA
* * * * *
24402149 GCGCTTTCCTAAAAATGCCGCTAAATCCCCAAAAAGCTCAAAAAACGGCGTTGTTGGGCTTAGGT
1 GCGCTTTCTTAAAAACGCCGCTAAATCCACAAAAAGCTCAAAAAACGGCATCGTTGGGCTTAGGT
24402214 TTCTTTGCG
66 TTCTTTGCG
* *
24402223 GCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAA-CTCAGAAAACGGCATCGTTGGGCTTAGGT
1 GCGCTTTCTTAAAAACGCCGCTAAATCCACAAAAAGCTCAAAAAACGGCATCGTTGGGCTTAGGT
*
24402287 TTTTTTGCG
66 TTCTTTGCG
* *
24402296 GTGCTTTCTCAAAAACGCCGCTAAA
1 GCGCTTTCTTAAAAACGCCGCTAAA
24402321 GCCCTGAGCA
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 57 0.65
74 31 0.35
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (74 bp):
GCGCTTTCTTAAAAACGCCGCTAAATCCACAAAAAGCTCAAAAAACGGCATCGTTGGGCTTAGGT
TTCTTTGCG
Found at i:24402420 original size:114 final size:114
Alignment explanation
Indices: 24402220--24402662 Score: 730
Period size: 114 Copynumber: 3.9 Consensus size: 114
24402210 AGGTTTCTTT
*
24402220 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAACTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
* *
24402285 GTTTTTTTGCGGTGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTA
24402334 GCGGCGC-TT-TTAAGAAAGCGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTT
1 GCGGCGCTTTCTTAA-AAA-CGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTT
*
24402397 AGGTTTTTTTGCGGCGCTTTCTCAAAAATACCGCTAAAGCCCTGAGCATTA
64 AGGTTTTTTTGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTA
24402448 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
* * *
24402513 GTTTTTTTGCGGTAG-TTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTT
66 GTTTTTTTGCGG-CGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTA
* * *
24402562 GCGGCGCTTTCTTAAAAACGCCGCTAAATCTACGAAAGCTCAGAAAATGGCATTGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
* *
24402627 GTTTTTTTGCGGCGCTTTTTAAAAAACACCGCTAAA
66 GTTTTTTTGCGGCGCTTTCTCAAAAACACCGCTAAA
24402663 TCCACGAAAG
Statistics
Matches: 308, Mismatches: 15, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
112 4 0.01
113 6 0.02
114 288 0.94
115 6 0.02
116 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (114 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
GTTTTTTTGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTA
Found at i:24402678 original size:73 final size:71
Alignment explanation
Indices: 24402559--24402734 Score: 253
Period size: 73 Copynumber: 2.4 Consensus size: 71
24402549 GCCCTGAGCA
* * **
24402559 TTTGCGGCGCTTTCTTAAAAACGCCGCTAAATCTACGAAAGCTCAGAAAATGGCATTGTTGGGCT
1 TTTGCGGCGCTTT-TTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCT
*
24402624 TAGGTTTT
65 TAGG-ATT
*
24402632 TTTGCGGCGCTTTTTAAAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCT
1 TTTGCGGCGCTTTTT-AAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCT
24402697 TAGGATT
65 TAGGATT
*
24402704 TTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 TTTGCGGCGCTTT-TTAAAAACGCCGCTAAA
24402735 GCCCTGATCA
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
72 31 0.33
73 62 0.67
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
TTTGCGGCGCTTTTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTT
AGGATT
Found at i:24402765 original size:186 final size:186
Alignment explanation
Indices: 24402448--24402848 Score: 617
Period size: 186 Copynumber: 2.1 Consensus size: 186
24402438 CTGAGCATTA
*
24402448 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTT-TTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAG
* *
24402513 GTTTTTTTGCGGTAGTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTTGCGGCGCTTTCTTAAA
65 GTATTTTTGCGGTAGTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
* * * *
24402578 AACGCCGCTAAATCTACGAAAGCTCAGAAAATGGCATTGTTGGGCTTAGGTTTTTTT
130 AACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTT
*
24402635 GCGGCGCTTTTTAAAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAG
1 GCGGCGCTTTTT-AAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAG
* * *
24402700 G-ATTTTTGCGG-CGCTTTCTCAAAAACGCCGCTAAAGCCCTGATCATTAGCGGCGTTTTCTTAA
65 GTATTTTTGCGGTAG-TTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAA
* *
24402763 AAACACCGCTAAATCCACGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
129 AAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTT
* *
24402821 GCGGCGCTTTCTCAAAAACGCTGCTAAA
1 GCGGCGCTTT-TTAAAAACGCCGCTAAA
24402849 GCCTTGAGCA
Statistics
Matches: 195, Mismatches: 16, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
185 1 0.01
186 132 0.68
187 62 0.32
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (186 bp):
GCGGCGCTTTTTAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAGG
TATTTTTGCGGTAGTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAA
ACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTT
Found at i:24402806 original size:300 final size:301
Alignment explanation
Indices: 24402334--24402933 Score: 954
Period size: 300 Copynumber: 2.0 Consensus size: 301
24402324 CTGAGCATTA
* * *
24402334 GCGGCGCTTTTAAGAAAGCGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTTTAAGAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAG
* *
24402399 GTTTTTTTGCGGCGCTTTCTCAAAAATACCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
66 GTATTTTTGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
*
24402464 AACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGTAG-
131 AACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGG-AGC
* * *
24402528 TTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTTGCGGCGCTTTCTTAAAAACGCCGCTAAATCT
195 TTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACACCGCGAAATCT
** *
24402593 ACGAAAGCTCAGAAAATGGCATTGTTGGGCTTAGGTTTTTTT
260 ACGAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTTTTTTT
24402635 GCGGCGCTTTTTAA-AAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTA
1 GCGGCGC-TTTTAAGAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTA
* * *
24402699 GG-ATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGATCATTAGCGGCGTTTTCTTAA
65 GGTATTTTTGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAA
* * *
24402763 AAACACCGCTAAATCCACGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGC
130 AAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGAGC
* *
24402828 TTTCTCAAAAACGCTGCTAAAGCCTTGAGCATTAGCGGCGCTTTCTTAAAAACACCGCGAAATCT
195 TTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACACCGCGAAATCT
* * *
24402893 CCGAAAGCTCGGTAAACAGCATCGTTGGGCTTAGGTTTTTT
260 ACGAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTTTTTT
24402934 ACGCGGCGTT
Statistics
Matches: 274, Mismatches: 23, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
299 1 0.00
300 211 0.77
301 56 0.20
302 6 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (301 bp):
GCGGCGCTTTTAAGAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAG
GTATTTTTGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
AACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGAGCT
TTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACACCGCGAAATCTA
CGAAAGCTCAGAAAACAGCATCGTTGGGCTTAGGTTTTTTT
Found at i:24402861 original size:114 final size:114
Alignment explanation
Indices: 24402635--24402933 Score: 442
Period size: 114 Copynumber: 2.6 Consensus size: 114
24402625 AGGTTTTTTT
* *
24402635 GCGGCGCTTTT-TAAAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTA
1 GCGGCG-TTTTCTTAAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTA
* *
24402699 GG-ATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGATCATTA
65 GGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* *
24402748 GCGGCGTTTTCTTAAAAACACCGCTAAATCCACGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGTTTTCTTAAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
* *
24402813 GTTTTTTTGCGGCGCTTTCTCAAAAACGCTGCTAAAGCCTTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * *
24402862 GCGGCGCTTTCTTAAAAACACCGCGAAATCTC-CGAAAGCTCGGTAAACAGCATCGTTGGGCTTA
1 GCGGCGTTTTCTTAAAAACACCGCTAAATC-CACGAAAGCTCAGAAAACGGCATCGTTGGGCTTA
24402926 GGTTTTTT
65 GGTTTTTT
24402934 ACGCGGCGTT
Statistics
Matches: 168, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
112 4 0.02
113 57 0.34
114 106 0.63
115 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (114 bp):
GCGGCGTTTTCTTAAAAACACCGCTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAG
GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:24410531 original size:25 final size:24
Alignment explanation
Indices: 24410477--24410531 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 24
24410467 TTTATTTTTA
*
24410477 TATTTTAATTTTTTTAATATAATT
1 TATTTTAATTTTTATAATATAATT
*
24410501 TGATTTCTATATTTTTATAATATTA-T
1 T-ATTT-TA-ATTTTTATAATATAATT
24410527 TATTT
1 TATTT
24410532 AGTTCAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 8 0.31
26 4 0.15
27 13 0.50
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TATTTTAATTTTTATAATATAATT
Found at i:24411249 original size:58 final size:59
Alignment explanation
Indices: 24411138--24411265 Score: 188
Period size: 58 Copynumber: 2.2 Consensus size: 59
24411128 TAGTAGAGGG
* * *
24411138 CACCCAACTATGGTTATTTTTCTTTTTGGTTACCCAAATATGAAAAGTTACAAAATGGT
1 CACCCAACTATGGTTATTTTTCTTTTTGATCACCCAAATATGAAAAGTTACAAAATGAT
*
24411197 CACCCAACTATGGTT-TTTTTCTCTTTTGATCACCCAACTATG-AAAGTTACAAAATGAT
1 CACCCAACTATGGTTATTTTTCT-TTTTGATCACCCAAATATGAAAAGTTACAAAATGAT
*
24411255 CATCCAACTAT
1 CACCCAACTAT
24411266 TCAAATTTGT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 32 0.51
59 31 0.49
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (59 bp):
CACCCAACTATGGTTATTTTTCTTTTTGATCACCCAAATATGAAAAGTTACAAAATGAT
Found at i:24411281 original size:58 final size:59
Alignment explanation
Indices: 24411169--24411281 Score: 131
Period size: 58 Copynumber: 1.9 Consensus size: 59
24411159 CTTTTTGGTT
* **** *
24411169 ACCCAAATATGAAAAGTTACAAAATGGTCACCCAACTATGGTTTTTTTCTCTTTTGATC
1 ACCCAAATATGAAAAGTTACAAAATGATCACCCAACTATCAAATTTGTCTCTTTTGATC
* *
24411228 ACCCAACTATG-AAAGTTACAAAATGATCATCCAACTATTCAAATTTGTC-CTTTT
1 ACCCAAATATGAAAAGTTACAAAATGATCACCCAACTA-TCAAATTTGTCTCTTTT
24411282 TGGTCACAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
58 29 0.64
59 16 0.36
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (59 bp):
ACCCAAATATGAAAAGTTACAAAATGATCACCCAACTATCAAATTTGTCTCTTTTGATC
Found at i:24413985 original size:6 final size:6
Alignment explanation
Indices: 24413974--24414013 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
24413964 CAGCCTAAAA
* *
24413974 AACAGC AACAGC AACATC AACATC AACATC AACATC AACA
1 AACATC AACATC AACATC AACATC AACATC AACATC AACA
24414014 CCAGCAACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.53, C:0.33, G:0.05, T:0.10
Consensus pattern (6 bp):
AACATC
Found at i:24414024 original size:18 final size:18
Alignment explanation
Indices: 24413974--24414025 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
24413964 CAGCCTAAAA
* *
24413974 AACAGCAACAGCAACATC
1 AACACCAACAACAACATC
* *
24413992 AACATCAACATCAACATC
1 AACACCAACAACAACATC
*
24414010 AACACCAGCAACAACA
1 AACACCAACAACAACA
24414026 AGCCATATCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.52, C:0.35, G:0.06, T:0.08
Consensus pattern (18 bp):
AACACCAACAACAACATC
Found at i:24416651 original size:20 final size:20
Alignment explanation
Indices: 24416605--24416654 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
24416595 TATTAGAGAC
*
24416605 TTTCAAAAAGTTGTGAATAA
1 TTTCAAGAAGTTGTGAATAA
24416625 TTTCAAGAAGTTGTGAATAA
1 TTTCAAGAAGTTGTGAATAA
24416645 TTTCAAGAAG
1 TTTCAAGAAG
24416655 AAATTTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (20 bp):
TTTCAAGAAGTTGTGAATAA
Found at i:24422310 original size:18 final size:18
Alignment explanation
Indices: 24422284--24422319 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24422274 TTTGATTCAC
*
24422284 CGTCATCATCATTATCAT
1 CGTCATCATCATCATCAT
*
24422302 CGTCGTCATCATCATCAT
1 CGTCATCATCATCATCAT
24422320 TATCACTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.36
Consensus pattern (18 bp):
CGTCATCATCATCATCAT
Found at i:24423803 original size:72 final size:73
Alignment explanation
Indices: 24423711--24423885 Score: 230
Period size: 72 Copynumber: 2.4 Consensus size: 73
24423701 AAAATCACAT
* * * *
24423711 ATAAACAACTATTGATAAAACTAATTTAGTA-AAAAATAAGTAGAATATAAATTCAATATCTAAA
1 ATAAATAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATCCAAA
*
24423775 GACCAAAC
66 AACCAAAC
* * * *
24423783 ATAAATAACTTTTAATAAAACTAGA-TTA-CACATAAATAAGTAGAACATAAATTTAATATCCAA
1 ATAAATAACTATTGATAAAACTA-ATTTAGCACAAAAATAAGTAGAACATAAATTCAATATCCAA
24423846 AAACCAAAC
65 AAACCAAAC
*
24423855 ATAAATAACTATTGATAAAACTAGTTTAGCA
1 ATAAATAACTATTGATAAAACTAATTTAGCA
24423886 TTGTTGTTTA
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
71 1 0.01
72 83 0.95
73 3 0.03
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.27
Consensus pattern (73 bp):
ATAAATAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATCCAAA
AACCAAAC
Found at i:24424328 original size:18 final size:18
Alignment explanation
Indices: 24424307--24424354 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
24424297 TCCATCAATT
*
24424307 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
24424325 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
*
24424343 TTAACATCATTT
1 TGAACATCATTT
24424355 CTCATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:24427057 original size:25 final size:25
Alignment explanation
Indices: 24427029--24427164 Score: 143
Period size: 25 Copynumber: 5.9 Consensus size: 25
24427019 AACAAAGAAG
24427029 CAGCAGAGGAACAAAGAACCAGCAC
1 CAGCAGAGGAACAAAGAACCAGCAC
* *
24427054 CAGCAAAGGAAC--A-AA-TA--AC
1 CAGCAGAGGAACAAAGAACCAGCAC
* *
24427073 CAGTAGAGGAACAAAGAACTAGCAC
1 CAGCAGAGGAACAAAGAACCAGCAC
24427098 CAGCAGAGGAACAAAGAACCAGCAC
1 CAGCAGAGGAACAAAGAACCAGCAC
*
24427123 CAGCAGAAGAACAAAG----AG--C
1 CAGCAGAGGAACAAAGAACCAGCAC
24427142 CAGCAGAGGAACAAAGAACCAGC
1 CAGCAGAGGAACAAAGAACCAGC
24427165 GATGGGAGAA
Statistics
Matches: 92, Mismatches: 8, Indels: 23
0.75 0.07 0.19
Matches are distributed among these distances:
19 28 0.30
21 4 0.04
22 4 0.04
23 5 0.05
25 51 0.55
ACGTcount: A:0.50, C:0.24, G:0.24, T:0.02
Consensus pattern (25 bp):
CAGCAGAGGAACAAAGAACCAGCAC
Found at i:24427081 original size:44 final size:44
Alignment explanation
Indices: 24427016--24427121 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
24427006 GGTGGAAAAG
*
24427016 AGGAACAAAGAAGCAGCAGAGGAACAAAGAACCAGCACCAGCAA
1 AGGAACAAAGAACCAGCAGAGGAACAAAGAACCAGCACCAGCAA
* * * *
24427060 AGGAACAAATAACCAGTAGAGGAACAAAGAACTAGCACCAGCAG
1 AGGAACAAAGAACCAGCAGAGGAACAAAGAACCAGCACCAGCAA
24427104 AGGAACAAAGAACCAGCA
1 AGGAACAAAGAACCAGCA
24427122 CCAGCAGAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.52, C:0.22, G:0.24, T:0.03
Consensus pattern (44 bp):
AGGAACAAAGAACCAGCAGAGGAACAAAGAACCAGCACCAGCAA
Found at i:24427119 original size:69 final size:69
Alignment explanation
Indices: 24427029--24427160 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 69
24427019 AACAAAGAAG
* *
24427029 CAGCAGAGGAACAAAGAACCAGCACCAGCA-AAGGAACAAATAACCAGTAGAGGAACAAAGAACT
1 CAGCAGAGGAACAAAGAACCAGCACCAGCAGAA-GAACAAAGAACCAGCAGAGGAACAAAGAACT
24427093 AGCAC
65 AGCAC
*
24427098 CAGCAGAGGAACAAAGAACCAGCACCAGCAGAAGAACAAAGAGCCAGCAGAGGAACAAAGAAC
1 CAGCAGAGGAACAAAGAACCAGCACCAGCAGAAGAACAAAGAACCAGCAGAGGAACAAAGAAC
24427161 CAGCGATGGG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 57 0.97
70 2 0.03
ACGTcount: A:0.51, C:0.23, G:0.23, T:0.02
Consensus pattern (69 bp):
CAGCAGAGGAACAAAGAACCAGCACCAGCAGAAGAACAAAGAACCAGCAGAGGAACAAAGAACTA
GCAC
Found at i:24427503 original size:34 final size:32
Alignment explanation
Indices: 24427443--24427524 Score: 105
Period size: 34 Copynumber: 2.6 Consensus size: 32
24427433 TAACATCAAA
*
24427443 ACTTAATTGATTCTTTAAATTATTTTATGAGG
1 ACTTAATTGATTCTTTAAATTATTTTAGGAGG
*
24427475 ACTTAATTGATTCTTTTTTAATTATTTTAGGAGG
1 ACTTAATTGATTC--TTTAAATTATTTTAGGAGG
*
24427509 -CTTAAATGATT-TTTAA
1 ACTTAATTGATTCTTTAA
24427525 GGATTATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
30 4 0.09
32 13 0.30
33 10 0.23
34 17 0.39
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.51
Consensus pattern (32 bp):
ACTTAATTGATTCTTTAAATTATTTTAGGAGG
Found at i:24427646 original size:19 final size:19
Alignment explanation
Indices: 24427595--24427657 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 19
24427585 ATTTTAATTT
24427595 TTTTAATAATATTTAATAAC
1 TTTTAATAAT-TTTAATAAC
24427615 TTATATAAT-ATTTT-ATAAC
1 TT-T-TAATAATTTTAATAAC
24427634 ATTTTAATAATTTCTAATAA-
1 -TTTTAATAATTT-TAATAAC
24427654 TTTT
1 TTTT
24427658 TTAAAAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
18 4 0.11
19 14 0.38
20 8 0.22
21 7 0.19
22 4 0.11
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAATAATTTTAATAAC
Found at i:24427655 original size:10 final size:9
Alignment explanation
Indices: 24427583--24427657 Score: 55
Period size: 10 Copynumber: 7.8 Consensus size: 9
24427573 AAAGGAGTAG
24427583 TAATTTTAA
1 TAATTTTAA
**
24427592 TTTTTTTAA
1 TAATTTTAA
24427601 TAATATTTAA
1 TAAT-TTTAA
24427611 TAACTTATATAA
1 TAA-TT-T-TAA
24427623 T-ATTTT-A
1 TAATTTTAA
24427630 TAACATTTTAA
1 T-A-ATTTTAA
24427641 TAATTTCTAA
1 TAATTT-TAA
24427651 TAATTTT
1 TAATTTT
24427658 TTAAAAAAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
7 2 0.04
8 1 0.02
9 15 0.28
10 26 0.49
11 5 0.09
12 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (9 bp):
TAATTTTAA
Found at i:24427938 original size:10 final size:10
Alignment explanation
Indices: 24427907--24427964 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
24427897 AATATTTTCC
24427907 ATAATTTTCTT
1 ATAATTTT-TT
24427918 AT-ATATTTTT
1 ATAAT-TTTTT
*
24427928 ACAATTTTTT
1 ATAATTTTTT
*
24427938 ATATTTTTTT
1 ATAATTTTTT
*
24427948 ATAAGTTTTT
1 ATAATTTTTT
24427958 AT-ATTTT
1 ATAATTTT
24427965 AATTATTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 4 0.10
10 28 0.72
11 7 0.18
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:24427939 original size:20 final size:20
Alignment explanation
Indices: 24427909--24427961 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
24427899 TATTTTCCAT
24427909 AATTTTCTTATATATTTTTAC
1 AATTTT-TTATATATTTTTAC
* *
24427930 AATTTTTTATATTTTTTTAT
1 AATTTTTTATATATTTTTAC
*
24427950 AAGTTTTTATAT
1 AATTTTTTATAT
24427962 TTTAATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 23 0.79
21 6 0.21
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (20 bp):
AATTTTTTATATATTTTTAC
Found at i:24427962 original size:20 final size:20
Alignment explanation
Indices: 24427916--24427964 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
24427906 CATAATTTTC
* *
24427916 TTATATATTTTTACAATTTT
1 TTATATTTTTTTACAAGTTT
*
24427936 TTATATTTTTTTATAAGTTT
1 TTATATTTTTTTACAAGTTT
24427956 TTATATTTT
1 TTATATTTT
24427965 AATTATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTATATTTTTTTACAAGTTT
Found at i:24427993 original size:29 final size:29
Alignment explanation
Indices: 24427930--24427993 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
24427920 ATATTTTTAC
* * *
24427930 AATTTTTTATATTTTTTTATAAGTTTTTA
1 AATTTTTAATATTTTTTTATAAGATTCTA
*
24427959 TA-TTTTAATTATTTTTTTAT-AGATTCTA
1 AATTTTTAA-TATTTTTTTATAAGATTCTA
24427987 AATTTTT
1 AATTTTT
24427994 TATAACATTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
28 12 0.43
29 16 0.57
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (29 bp):
AATTTTTAATATTTTTTTATAAGATTCTA
Found at i:24430326 original size:14 final size:14
Alignment explanation
Indices: 24430303--24430332 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24430293 TGTCATTTCG
24430303 CTATTATATTGTTA
1 CTATTATATTGTTA
*
24430317 CTATTTTATTGTTA
1 CTATTATATTGTTA
24430331 CT
1 CT
24430333 GTTTGGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60
Consensus pattern (14 bp):
CTATTATATTGTTA
Found at i:24437015 original size:3 final size:3
Alignment explanation
Indices: 24437007--24437032 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
24436997 TTTTATTTAC
24437007 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
24437033 CCTATGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24438870 original size:27 final size:28
Alignment explanation
Indices: 24438820--24438873 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
24438810 AACATAAAAA
* *
24438820 TATAAAAATATGTACATGTGTATGTATT
1 TATAAAAATATGTACAAGTATATGTATT
*
24438848 TATAAAAA-ATGTATAAGTATATGTAT
1 TATAAAAATATGTACAAGTATATGTAT
24438874 ATAGATTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.41
Consensus pattern (28 bp):
TATAAAAATATGTACAAGTATATGTATT
Found at i:24439410 original size:17 final size:18
Alignment explanation
Indices: 24439388--24439421 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24439378 AAATATGTAA
*
24439388 CATATGTATATA-AGATG
1 CATATGCATATATAGATG
24439405 CATATGCATATATAGAT
1 CATATGCATATATAGAT
24439422 AAATATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (18 bp):
CATATGCATATATAGATG
Found at i:24441054 original size:44 final size:45
Alignment explanation
Indices: 24440963--24441060 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 45
24440953 AAGACTTGTA
* **
24440963 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
* * *
24441008 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
24441052 TCTTCGATC
1 TCTTCGATC
24441061 GATTCTACTG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 31 0.66
45 16 0.34
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
Found at i:24441406 original size:133 final size:133
Alignment explanation
Indices: 24441195--24441440 Score: 393
Period size: 133 Copynumber: 1.8 Consensus size: 133
24441185 ATCTACTTCG
* * * * *
24441195 CCACCAGTATGGGAAGATAAAATCTGTATATTCGATCCACTTCGCTACGGATATAGGAAGACAGG
1 CCACCAATATGGGAAGACAAAATATGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAAG
** *
24441260 ACCTGTTACCTTTGATCTACTTCACGCCAGTACATGAAGATAAGATCTATTTTCTTCGATTCACT
66 ACCTACTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCTTCGATTCACT
24441325 CCA
131 CCA
* *
24441328 CCACCAATATGGGGAGACAAGATATGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAAG
1 CCACCAATATGGGAAGACAAAATATGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAAG
*
24441393 ACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT
66 ACCTACTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT
24441441 GTTATCTTTC
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 102 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (133 bp):
CCACCAATATGGGAAGACAAAATATGTATATTCGATCCACTTCGCTACCGATATAGGAAGACAAG
ACCTACTACCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCTTCGATTCACT
CCA
Found at i:24441447 original size:44 final size:44
Alignment explanation
Indices: 24441249--24441449 Score: 120
Period size: 44 Copynumber: 4.5 Consensus size: 44
24441239 CTACGGATAT
* * * *
24441249 AGGAAGACAGGACCTGTTACCTTTGATCTACTTCACGCCAGTAC
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCACACCAGTAC
* * * * * * * *
24441293 ATGAAGATAAGATCTATTTTCTTCGAT-TCACTCCACCACCAATAT
1 AGGAAGACAAGATCTGTTATCTTTGATCT-ACTTCA-CACCAGTAC
* * * * * * * *
24441338 GGGGAGACAAGATATG-TATATTCGATCCACTTCGCTACC-GATAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCAC-ACCAG-TAC
* ** *
24441382 AGGAAGACAAGACCTACTATCTTTGATCTACTTCACGCCAGTAC
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCACACCAGTAC
*
24441426 ATGAAGACAAGATCTGTTATCTTT
1 AGGAAGACAAGATCTGTTATCTTT
24441450 CAACCTGCTC
Statistics
Matches: 111, Mismatches: 39, Indels: 14
0.68 0.24 0.09
Matches are distributed among these distances:
43 2 0.02
44 77 0.69
45 32 0.29
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (44 bp):
AGGAAGACAAGATCTGTTATCTTTGATCTACTTCACACCAGTAC
Found at i:24452895 original size:30 final size:30
Alignment explanation
Indices: 24452806--24452896 Score: 96
Period size: 30 Copynumber: 3.0 Consensus size: 30
24452796 GAGAATCATG
**
24452806 AATGCATTTGTATACATCAAACTTTAATGC
1 AATGCATTTGTATACATCAAACTTTAATTT
* *
24452836 AATTGGCA-ATGTTATACATC-AATTTTAATTT
1 AA-T-GCATTTG-TATACATCAAACTTTAATTT
*
24452867 GATGCATTTGTATACATCAAACTTTAATTT
1 AATGCATTTGTATACATCAAACTTTAATTT
24452897 TAGTTCAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
29 11 0.22
30 15 0.31
31 12 0.24
32 11 0.22
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (30 bp):
AATGCATTTGTATACATCAAACTTTAATTT
Found at i:24453277 original size:29 final size:31
Alignment explanation
Indices: 24453211--24453277 Score: 86
Period size: 29 Copynumber: 2.2 Consensus size: 31
24453201 GAAATGTGAA
*
24453211 AATTAAACCAAAATTAAAGTTTAATGTATAC
1 AATTACACCAAAATTAAAGTTTAATGTATAC
*
24453242 AAATACACC-AAATTAAAG-TTAATGTATA-
1 AATTACACCAAAATTAAAGTTTAATGTATAC
24453270 ACATTACA
1 A-ATTACA
24453278 AATTGTATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.03
29 15 0.47
30 9 0.28
31 7 0.22
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (31 bp):
AATTACACCAAAATTAAAGTTTAATGTATAC
Found at i:24454418 original size:17 final size:18
Alignment explanation
Indices: 24454384--24454418 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24454374 ATAGAAGGTG
24454384 AAATAAGTATACATTTAA
1 AAATAAGTATACATTTAA
*
24454402 AAATAATTATA-ATTTAA
1 AAATAAGTATACATTTAA
24454419 TAGAAGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (18 bp):
AAATAAGTATACATTTAA
Found at i:24454423 original size:44 final size:44
Alignment explanation
Indices: 24454373--24454497 Score: 180
Period size: 44 Copynumber: 2.9 Consensus size: 44
24454363 AATTAAACAA
* * *
24454373 AATAGAAGGTGAAATAAGTATACATTTAAAAATAATTATAATTT
1 AATAGAAGTTGAAATAACTATACATTTAAAAATAATTATAATTG
24454417 AATAGAAGTTGAAATAACTATACATTTAAAAATAATTATAATTG
1 AATAGAAGTTGAAATAACTATACATTTAAAAATAATTATAATTG
** * *
24454461 AATAGAAGTTGTGATAATTACACA-TTAAAAATAATTA
1 AATAGAAGTTGAAATAACTATACATTTAAAAATAATTA
24454498 GAATAAGAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 13 0.18
44 61 0.82
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (44 bp):
AATAGAAGTTGAAATAACTATACATTTAAAAATAATTATAATTG
Found at i:24460900 original size:3 final size:3
Alignment explanation
Indices: 24460892--24460933 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
24460882 TCATACATTC
24460892 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24460934 GATGATGATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24463713 original size:28 final size:29
Alignment explanation
Indices: 24463662--24463724 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
24463652 CGTCTGAGAG
24463662 AAAAAAAGGGAGAAATGAAGTTTTTTTT-
1 AAAAAAAGGGAGAAATGAAGTTTTTTTTC
*
24463690 AAAACAAGGGATGAAATGAA-TTTTTTTTC
1 AAAAAAAGGGA-GAAATGAAGTTTTTTTTC
24463719 AAAAAA
1 AAAAAA
24463725 TTTTAACTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.30
Consensus pattern (29 bp):
AAAAAAAGGGAGAAATGAAGTTTTTTTTC
Found at i:24463715 original size:29 final size:28
Alignment explanation
Indices: 24463662--24463724 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
24463652 CGTCTGAGAG
*
24463662 AAAAAAAGGGAGAAATGAAGTTTTTTTT
1 AAAAAAAGGGAGAAATGAAGTTTTTTTC
* *
24463690 AAAACAAGGGATGAAATGAATTTTTTTTC
1 AAAAAAAGGGA-GAAATGAAGTTTTTTTC
24463719 AAAAAA
1 AAAAAA
24463725 TTTTAACTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.30
Consensus pattern (28 bp):
AAAAAAAGGGAGAAATGAAGTTTTTTTC
Found at i:24464426 original size:29 final size:29
Alignment explanation
Indices: 24464374--24464439 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
24464364 CTTTGCATAC
* *
24464374 TTATTATTATCATTATTATTTTATCTTGTT
1 TTATTATTATCATCATTATTTTAT-TTCTT
24464404 TT-TTATTATCATCATT-TTATTATTTCTT
1 TTATTATTATCATCATTATT-TTATTTCTT
24464432 TTATTATT
1 TTATTATT
24464440 TTTGGCACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.25
29 22 0.69
30 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.68
Consensus pattern (29 bp):
TTATTATTATCATCATTATTTTATTTCTT
Found at i:24468874 original size:49 final size:49
Alignment explanation
Indices: 24468801--24468940 Score: 235
Period size: 49 Copynumber: 2.8 Consensus size: 49
24468791 GAGCATAAAT
*
24468801 TAAAGTAAATGTGCTAAAATGTTGAGGGATAGATAAGGAAATCAAAGGAC
1 TAAAGTAAAT-TGCTAAAATGTTGAGGGACAGATAAGGAAATCAAAGGAC
*
24468851 TAAAGTAAATTGCTAAAATGTTGAGGGACAGATAGGGAAATCAAAGGAC
1 TAAAGTAAATTGCTAAAATGTTGAGGGACAGATAAGGAAATCAAAGGAC
* *
24468900 TAAAGTAAATTGCTAAAATGTTGAGGGACCGATAGGGAAAT
1 TAAAGTAAATTGCTAAAATGTTGAGGGACAGATAAGGAAAT
24468941 TAAACCAGGC
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
49 77 0.89
50 10 0.11
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.22
Consensus pattern (49 bp):
TAAAGTAAATTGCTAAAATGTTGAGGGACAGATAAGGAAATCAAAGGAC
Found at i:24479327 original size:17 final size:17
Alignment explanation
Indices: 24479305--24479365 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
24479295 ATTGAATCAC
24479305 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
24479322 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
24479342 TACATAATTAAAAGCAT
1 TACATAATTAAAAACAT
24479359 TACATAA
1 TACATAA
24479366 GTCTTGAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:24479343 original size:37 final size:37
Alignment explanation
Indices: 24479296--24479370 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
24479286 ATTACCCAAA
24479296 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
24479333 TTGAATCACTACATAATTAAAAGCATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
24479370 T
1 T
24479371 GAAATTAACA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:24484144 original size:44 final size:44
Alignment explanation
Indices: 24484057--24484257 Score: 126
Period size: 44 Copynumber: 4.4 Consensus size: 44
24484047 ACAATGGTGG
* *
24484057 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATAAAGCTACAA
* * * *
24484101 ATCTTATTTCCTTGGAGTTACAGTGGAGCAA-ATTAAAGTTACAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAAGA-TAAAGCTACAA
* * * * *
24484145 ATCCTA-CACGCCTGAAGTTGCAGTGG-GTC-AGATTGAATCTACCATAGAAA
1 ATCTTATCTC-CCTGAAGTTACAGTGGAG-CAAGA-T-AA---AGC-TA-CAA
* *
24484195 ATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGCTACAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAAGA-TAAAGCTACAA
*
24484239 AACTTATAC-CCCTGAAGTT
1 ATCTTAT-CTCCCTGAAGTT
24484258 GTAGTAGGTT
Statistics
Matches: 123, Mismatches: 21, Indels: 26
0.72 0.12 0.15
Matches are distributed among these distances:
43 4 0.03
44 76 0.62
45 5 0.04
46 2 0.02
48 1 0.01
49 3 0.02
50 29 0.24
51 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATAAAGCTACAA
Found at i:24484203 original size:138 final size:136
Alignment explanation
Indices: 24483864--24484245 Score: 417
Period size: 138 Copynumber: 2.8 Consensus size: 136
24483854 CCTAATTGAT
* * * * *
24483864 GCTACAATTTCTATACCCCTGAAGTTACAGTGGGTCGGATTGAACTTACCATAGCGAATCTTATC
1 GCTACAAATCCTACACCCCTGAAGTTGCAGTGGGTCGGATTGAAC-TACCATAGAGAATCTTATC
* * * ** *
24483929 TCCTTGAAGTTGCAGTGGAGCAAGATGAAACTACAAATCCTA-TCCTTGAAGTTGTAGTGCATCA
65 TCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATTCCTTGAAGTTACAGTGCAGCA
* *
24483993 GATTAAC
130 AATTAAA
* * * * ** * * * * * *
24484000 GCTACAATTTCTATACCCCTAAAGTTGTTGTGGGTTGGAATGAAACTACAATGGTGGATCTTATC
1 GCTACAAATCCTACACCCCTGAAGTTGCAGTGGGTCGGATTG-AACTACCATAGAGAATCTTATC
* *
24484065 TCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATTTCCTTGGAGTTACAGTGGAGC
65 TCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTA-TTCCTTGAAGTTACAGTGCAGC
24484130 AAATTAAA
129 AAATTAAA
* * * *
24484138 GTTACAAATCCTACACGCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGAAAATCTTATC
1 GCTACAAATCCTACACCCCTGAAGTTGCAGTGGGTCGGATTGAA-CTACCATAGAGAATCTTATC
*
24484203 TCCCTGAAGTTGCAGTGGAGC-AGATTGAAGCTACAAAACTTAT
65 TCCCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCTTAT
24484246 ACCCCTGAAG
Statistics
Matches: 204, Mismatches: 37, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
136 90 0.44
137 9 0.04
138 105 0.51
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (136 bp):
GCTACAAATCCTACACCCCTGAAGTTGCAGTGGGTCGGATTGAACTACCATAGAGAATCTTATCT
CCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATTCCTTGAAGTTACAGTGCAGCAA
ATTAAA
Found at i:24484218 original size:50 final size:50
Alignment explanation
Indices: 24484155--24484314 Score: 165
Period size: 50 Copynumber: 3.3 Consensus size: 50
24484145 ATCCTACACG
24484155 CCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGAAAATCTTATCTC
1 CCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGAAAATCTTATCTC
*
24484205 CCTGAAGTTGCAGTGGAG-CAGATTGAAGCTA-C----AAAA-CTTATAC-C
1 CCTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGAAAATCTTAT-CTC
* * ** **
24484249 CCTGAAGTTGTAGTAGGTTTGATTGAATCTACCATAGTGAATCTTATCTC
1 CCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGAAAATCTTATCTC
* *
24484299 CCTTAGGTTGCAGTGG
1 CCTGAAGTTGCAGTGG
24484315 AACAAGATGA
Statistics
Matches: 88, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 30 0.34
45 6 0.07
49 4 0.05
50 46 0.52
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (50 bp):
CCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGAAAATCTTATCTC
Found at i:24484326 original size:94 final size:94
Alignment explanation
Indices: 24484099--24484356 Score: 266
Period size: 94 Copynumber: 2.7 Consensus size: 94
24484089 ATGAAGCTAC
* * * * * * * * * * * *
24484099 AAATCTTATTTCCTTGGAGTTACAGTGGAGCAAATTAAAGTTACAAATCCTACACGCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAAACTTATACCCCTGAAGTT
*
24484164 GCAGTGGGTCAGATTGAATCTACCATAGA
66 GCAGTAGGTCAGATTGAATCTACCATAGA
*
24484193 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAAACTTATACCCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAAACTTATACCCCTGAAGTT
* ** *
24484258 GTAGTAGGTTTGATTGAATCTACCATAGT
66 GCAGTAGGTCAGATTGAATCTACCATAGA
* * * * ** * *
24484287 GAATCTTATCTCCCTTAGGTTGCAGTGGAACAAGA-TGAAGGTACAATTCTTATGCCCCTGAGGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAAC-AGATTGAAGCTACAAAACTTATACCCCTGAAGT
24484351 TGCAGT
65 TGCAGT
24484357 TGAGCAAGAT
Statistics
Matches: 137, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
94 134 0.98
95 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (94 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAAACTTATACCCCTGAAGTT
GCAGTAGGTCAGATTGAATCTACCATAGA
Found at i:24484339 original size:44 final size:44
Alignment explanation
Indices: 24484290--24484376 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
24484280 CCATAGTGAA
* *
24484290 TCTTAT-CTCCCTTAGGTTGCAGTGGAACAAGATGAAGGTACAAT
1 TCTTATGC-CCCTGAGGTTGCAGTGGAACAAGATGAAGCTACAAT
* *
24484334 TCTTATGCCCCTGAGGTTGCAGTTGAGCAAGATGAAGCTACAA
1 TCTTATGCCCCTGAGGTTGCAGTGGAACAAGATGAAGCTACAA
24484377 CTCCTATATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTTATGCCCCTGAGGTTGCAGTGGAACAAGATGAAGCTACAAT
Found at i:24484777 original size:21 final size:22
Alignment explanation
Indices: 24484751--24484792 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
24484741 AATAAATAAG
*
24484751 CCAAAACAAATA-AAACAAAAT
1 CCAAAACAAAAATAAACAAAAT
24484772 CCAAAACAAAAATAAACAAAA
1 CCAAAACAAAAATAAACAAAA
24484793 GTTTGTTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.74, C:0.19, G:0.00, T:0.07
Consensus pattern (22 bp):
CCAAAACAAAAATAAACAAAAT
Found at i:24485261 original size:17 final size:17
Alignment explanation
Indices: 24485235--24485270 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
24485225 AAAAATTTAA
*
24485235 TTAAGTTTTTTCAACCT
1 TTAAGGTTTTTCAACCT
24485252 TTAAGGTTTTTCAACCT
1 TTAAGGTTTTTCAACCT
24485269 TT
1 TT
24485271 GAATAAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (17 bp):
TTAAGGTTTTTCAACCT
Found at i:24491236 original size:29 final size:29
Alignment explanation
Indices: 24491203--24491261 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
24491193 TTTTGGAATA
* * *
24491203 GGTGAAGAACTTGTTCGTTAAGAGTTCGT
1 GGTGAAAAACTTGTTCATTAAGAATTCGT
*
24491232 GGTGAAAAACTTGTTCATTGAGAATTCGT
1 GGTGAAAAACTTGTTCATTAAGAATTCGT
24491261 G
1 G
24491262 TCAATGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.34
Consensus pattern (29 bp):
GGTGAAAAACTTGTTCATTAAGAATTCGT
Found at i:24498531 original size:22 final size:22
Alignment explanation
Indices: 24498503--24498546 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
24498493 TCTATATAAG
24498503 TAAATTTAACTCAATTTAATAC
1 TAAATTTAACTCAATTTAATAC
*
24498525 TAAATTTCACTCAATTTAATAC
1 TAAATTTAACTCAATTTAATAC
24498547 AATTCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAATTTAACTCAATTTAATAC
Found at i:24503681 original size:6 final size:6
Alignment explanation
Indices: 24503672--24503716 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
24503662 TATATGTGTA
*
24503672 TGTGGG TGTGGG TGTGGG TGTGGG TGTGGG TGTGGG TGTGTG TGT
1 TGTGGG TGTGGG TGTGGG TGTGGG TGTGGG TGTGGG TGTGGG TGT
24503717 TACTTAGATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.62, T:0.38
Consensus pattern (6 bp):
TGTGGG
Found at i:24503687 original size:18 final size:18
Alignment explanation
Indices: 24503666--24503716 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
24503656 TGTGTGTATA
*
24503666 TGTGTATGTGGGTGTGGG
1 TGTGGATGTGGGTGTGGG
*
24503684 TGTGGGTGTGGGTGTGGG
1 TGTGGATGTGGGTGTGGG
* *
24503702 TGTGGGTGTGTGTGT
1 TGTGGATGTGGGTGT
24503717 TACTTAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.02, C:0.00, G:0.59, T:0.39
Consensus pattern (18 bp):
TGTGGATGTGGGTGTGGG
Found at i:24507638 original size:11 final size:10
Alignment explanation
Indices: 24507622--24507657 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
24507612 CTTCTATGTT
24507622 AAAAAACTATA
1 AAAAAAC-ATA
24507633 AAAAAACATA
1 AAAAAACATA
*
24507643 AAAAAACGTA
1 AAAAAACATA
24507653 AAAAA
1 AAAAA
24507658 GAAGATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 17 0.71
11 7 0.29
ACGTcount: A:0.78, C:0.08, G:0.03, T:0.11
Consensus pattern (10 bp):
AAAAAACATA
Found at i:24507657 original size:22 final size:21
Alignment explanation
Indices: 24507622--24507671 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
24507612 CTTCTATGTT
*
24507622 AAAAAACTATAAAAAAACATA
1 AAAAAACTAAAAAAAAACATA
* *
24507643 AAAAAACGTAAAAAAGAAGATA
1 AAAAAAC-TAAAAAAAAACATA
24507665 AATAAAA
1 AA-AAAA
24507672 AGAATATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 13 0.54
23 4 0.17
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (21 bp):
AAAAAACTAAAAAAAAACATA
Found at i:24509906 original size:20 final size:21
Alignment explanation
Indices: 24509871--24509911 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
24509861 CACCAGTTAA
24509871 AATTAATTAGCTAATACTTGC
1 AATTAATTAGCTAATACTTGC
* *
24509892 AATTTATTA-CTAATATTTGC
1 AATTAATTAGCTAATACTTGC
24509912 TGATTTCTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (21 bp):
AATTAATTAGCTAATACTTGC
Found at i:24519135 original size:20 final size:21
Alignment explanation
Indices: 24519107--24519147 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
24519097 CAAGAAATCA
24519107 GCAAATATTAG-TAATAAATT
1 GCAAATATTAGCTAATAAATT
* *
24519127 GCAAGTATTAGCTAATTAATT
1 GCAAATATTAGCTAATAAATT
24519148 TTAACTGGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (21 bp):
GCAAATATTAGCTAATAAATT
Found at i:24519852 original size:12 final size:12
Alignment explanation
Indices: 24519835--24519868 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
24519825 TCATTGATTA
24519835 AAATATTACAAT
1 AAATATTACAAT
24519847 AAATATTACAAT
1 AAATATTACAAT
24519859 AAATATTACA
1 AAATATTACA
24519869 GAAATGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATATTACAAT
Found at i:24523946 original size:30 final size:31
Alignment explanation
Indices: 24523900--24523963 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
24523890 TTTTATTATG
24523900 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
* *
24523931 CCAATAT-TTGATACCCATATCTTTGATTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
24523961 CCA
1 CCA
24523964 TAAATATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.27, C:0.27, G:0.06, T:0.41
Consensus pattern (31 bp):
CCAATATCTCGATACCCATATCTTTGACTTT
Found at i:24523955 original size:15 final size:15
Alignment explanation
Indices: 24523910--24523957 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
24523900 CCAATATCTC
24523910 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
24523925 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
24523940 GATACCCATATCTTT
1 GATACCCATATCTTT
24523955 GAT
1 GAT
24523958 TTTCCATAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:24528507 original size:30 final size:31
Alignment explanation
Indices: 24528461--24528524 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
24528451 TTTTATTATG
24528461 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
* *
24528492 CCAATAT-TTGATACCCATATCTTTGATTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
24528522 CCA
1 CCA
24528525 TAAATATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.27, C:0.27, G:0.06, T:0.41
Consensus pattern (31 bp):
CCAATATCTCGATACCCATATCTTTGACTTT
Found at i:24528516 original size:15 final size:15
Alignment explanation
Indices: 24528471--24528518 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
24528461 CCAATATCTC
24528471 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
24528486 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
24528501 GATACCCATATCTTT
1 GATACCCATATCTTT
24528516 GAT
1 GAT
24528519 TTTCCATAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:24529276 original size:19 final size:19
Alignment explanation
Indices: 24529252--24529317 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
24529242 ATTAAAATAG
24529252 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
24529271 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
24529289 TCTCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
24529308 TTTAATTTAA
1 TTTAATTTAA
24529318 AAAATTAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.50
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:24529582 original size:18 final size:19
Alignment explanation
Indices: 24529543--24529638 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
24529533 ATTTTATATT
24529543 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
24529562 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
24529580 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
24529599 TTAAATGAGAATA-ATTTA
1 TTAAATGAAAATAGAGTTA
* *
24529617 TTAAATTAAAATAGAATTA
1 TTAAATGAAAATAGAGTTA
24529636 TTA
1 TTA
24529639 CTTAATTAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
18 30 0.47
19 34 0.53
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:24529584 original size:37 final size:37
Alignment explanation
Indices: 24529543--24529638 Score: 165
Period size: 37 Copynumber: 2.6 Consensus size: 37
24529533 ATTTTATATT
* *
24529543 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
24529580 TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
*
24529617 TTAAATTAAAATAGAATTATTA
1 TTAAATTAAAATAGAGTTATTA
24529639 CTTAATTAGA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
Found at i:24530350 original size:27 final size:28
Alignment explanation
Indices: 24530320--24530385 Score: 116
Period size: 29 Copynumber: 2.4 Consensus size: 28
24530310 TTTTTTTGGT
24530320 ATATTTTGGTAAAT-AAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
24530347 ATATTTTGGTAAATAAAAAAAAAGTTATA
1 ATATTTTGGTAAAT-AAAAAAAAGTTATA
24530376 ATATTTTGGT
1 ATATTTTGGT
24530386 TATTTTTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 14 0.38
29 23 0.62
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:24534575 original size:18 final size:18
Alignment explanation
Indices: 24534552--24534800 Score: 172
Period size: 17 Copynumber: 13.5 Consensus size: 18
24534542 CCATAATAAT
*
24534552 TTTTTGAAAACACGGAAA
1 TTTTTGAAAACACGAAAA
*
24534570 TTTTTG-AAACACGAGAATT
1 TTTTTGAAAACACGA-AA-A
* *
24534589 TTTTTGGAAACACTAAAA
1 TTTTTGAAAACACGAAAA
*
24534607 TTTTTTGAAAACATGAAAA
1 -TTTTTGAAAACACGAAAA
* * * *
24534626 CTTTTG-AAGCAAGAACATTTTT
1 TTTTTGAAAACACGAA-A----A
24534648 TTTTTGAAAACACG-AAA
1 TTTTTGAAAACACGAAAA
*
24534665 TTCTTTG-AAACACAAAAAA
1 TT-TTTGAAAACAC-GAAAA
** *
24534684 AATTTGAAAACGCGAAAA
1 TTTTTGAAAACACGAAAA
24534702 TTTTTG-AAACACGAAAAA
1 TTTTTGAAAACACG-AAAA
*
24534720 TTTTTTGAAAACGCGAAAAA
1 -TTTTTGAAAACACG-AAAA
*
24534740 TTTTT--AAACACGAGAAT
1 TTTTTGAAAACACGA-AAA
*
24534757 TTTTTGAAAACATGAAAA
1 TTTTTGAAAACACGAAAA
24534775 TTTTTG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
24534792 TTTTTGAAA
1 TTTTTGAAA
24534801 GACGTATCGT
Statistics
Matches: 181, Mismatches: 29, Indels: 42
0.72 0.12 0.17
Matches are distributed among these distances:
16 1 0.01
17 57 0.31
18 44 0.24
19 49 0.27
20 18 0.10
21 1 0.01
22 6 0.03
23 5 0.03
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.32
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:24534579 original size:17 final size:17
Alignment explanation
Indices: 24534552--24534800 Score: 94
Period size: 18 Copynumber: 13.5 Consensus size: 17
24534542 CCATAATAAT
24534552 TTTTTGAAAACACGGAAA
1 TTTTTG-AAACACGGAAA
*
24534570 TTTTTGAAACACGAGAATT
1 TTTTTGAAACACG-GAA-A
**
24534589 TTTTTGGAAACACTAAAA
1 TTTTT-GAAACACGGAAA
* *
24534607 TTTTTTGAAAACATGAAAA
1 -TTTTTG-AAACACGGAAA
* * *
24534626 CTTTTGAAGCA-AGAACA
1 TTTTTGAAACACGGAA-A
24534643 TTTTTTTTTTGAAAACAC-GAAA
1 -----TTTTTG-AAACACGGAAA
**
24534665 TTCTTTGAAACACAAAAAA
1 TT-TTTGAAACAC-GGAAA
**
24534684 AATTTGAAA-ACGCGAAAA
1 TTTTTGAAACACG-G-AAA
*
24534702 TTTTTGAAACACGAAAAA
1 TTTTTGAAACACG-GAAA
24534720 TTTTTTGAAA-ACGCGAAAAA
1 -TTTTTGAAACACG-G--AAA
*
24534740 TTTTT-AAACACGAGAAT
1 TTTTTGAAACACG-GAAA
* *
24534757 TTTTTGAAAACATGAAAA
1 TTTTTG-AAACACGGAAA
*
24534775 TTTTTGAAACACGAAAA
1 TTTTTGAAACACGGAAA
24534792 TTTTTGAAA
1 TTTTTGAAA
24534801 GACGTATCGT
Statistics
Matches: 177, Mismatches: 29, Indels: 51
0.69 0.11 0.20
Matches are distributed among these distances:
16 2 0.01
17 48 0.27
18 53 0.30
19 51 0.29
20 10 0.06
22 6 0.03
23 7 0.04
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.32
Consensus pattern (17 bp):
TTTTTGAAACACGGAAA
Found at i:24534593 original size:38 final size:37
Alignment explanation
Indices: 24534512--24534616 Score: 106
Period size: 37 Copynumber: 2.8 Consensus size: 37
24534502 GAAACATGAT
* *
24534512 ATTTTTTT-AAAACACGAGATTTTTGAAACACCATAA
1 ATTTTTTTGAAAACACGAAATTTTTGAAACACCAGAA
* *
24534548 TAATTTTTTGAAAACACGGAAATTTTTGAAACACGAG-A
1 -ATTTTTTTGAAAACAC-GAAATTTTTGAAACACCAGAA
* *
24534586 ATTTTTTTGGAAACACTAAAATTTTTTGAAA
1 ATTTTTTTGAAAACAC-GAAA-TTTTTGAAA
24534617 ACATGAAAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
37 24 0.42
38 17 0.30
39 16 0.28
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (37 bp):
ATTTTTTTGAAAACACGAAATTTTTGAAACACCAGAA
Found at i:24534794 original size:36 final size:36
Alignment explanation
Indices: 24534552--24534800 Score: 220
Period size: 36 Copynumber: 6.8 Consensus size: 36
24534542 CCATAATAAT
* *
24534552 TTTTTGAAAACACGGAAA-TTTTTG-AAACACGAGAATT
1 TTTTTG-AAACACGAAAATTTTTTGAAAACACGA-AA-A
* *
24534589 TTTTTGGAAACACTAAAATTTTTTGAAAACATGAAAA
1 TTTTT-GAAACACGAAAATTTTTTGAAAACACGAAAA
* * * *
24534626 CTTTTGAAGCAAGAACATTTTTTTTTTGAAAACACG-AAA
1 TTTTTGAAACACGAA-A---ATTTTTTGAAAACACGAAAA
* *** *
24534665 TTCTTTGAAACACAAAAAAAATTTGAAAACGCGAAAA
1 TT-TTTGAAACACGAAAATTTTTTGAAAACACGAAAA
*
24534702 TTTTTGAAACACGAAAAATTTTTTGAAAACGCGAAAAA
1 TTTTTGAAACACG-AAAATTTTTTGAAAACACG-AAAA
* *
24534740 TTTTT-AAACACGAGAATTTTTTGAAAACATGAAAA
1 TTTTTGAAACACGAAAATTTTTTGAAAACACGAAAA
24534775 TTTTTGAAACACGAAAA-TTTTTGAAA
1 TTTTTGAAACACGAAAATTTTTTGAAA
24534801 GACGTATCGT
Statistics
Matches: 173, Mismatches: 27, Indels: 26
0.77 0.12 0.12
Matches are distributed among these distances:
35 18 0.10
36 54 0.31
37 47 0.27
38 18 0.10
39 12 0.07
40 24 0.14
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.32
Consensus pattern (36 bp):
TTTTTGAAACACGAAAATTTTTTGAAAACACGAAAA
Found at i:24535293 original size:5 final size:5
Alignment explanation
Indices: 24535283--24535321 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
24535273 GCCTTTTTTG
* *
24535283 TTTCT TTTCT TTTCT TTTCT TTT-T CTTCT TTTTT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT
24535322 GCAAATTGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 3 0.10
5 26 0.90
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:24535320 original size:13 final size:14
Alignment explanation
Indices: 24535283--24535321 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
24535273 GCCTTTTTTG
*
24535283 TTTCTTTTCTTTTCT
1 TTTCTTTT-TCTTCT
24535298 TTTCTTTTTCTTCT
1 TTTCTTTTTCTTCT
24535312 TTT-TTTTTCT
1 TTTCTTTTTCT
24535322 GCAAATTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.30
14 8 0.35
15 8 0.35
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTCTTTTTCTTCT
Found at i:24535343 original size:15 final size:16
Alignment explanation
Indices: 24535320--24535352 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24535310 CTTTTTTTTT
24535320 CTGCAAATTGGG-CTG
1 CTGCAAATTGGGCCTG
*
24535335 CTGCGAATTGGGCCTG
1 CTGCAAATTGGGCCTG
24535351 CT
1 CT
24535353 TCACTGCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.15, C:0.24, G:0.33, T:0.27
Consensus pattern (16 bp):
CTGCAAATTGGGCCTG
Found at i:24535649 original size:13 final size:13
Alignment explanation
Indices: 24535628--24535690 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
24535618 GACTGTGATA
24535628 TTTTT-TTCTCTC
1 TTTTTCTTCTCTC
24535640 TTTTTCTTCTCTC
1 TTTTTCTTCTCTC
*
24535653 TTTTTCTTCTTTC
1 TTTTTCTTCTCTC
24535666 TTTTT-TTC-CT-
1 TTTTTCTTCTCTC
24535676 TTTCTTCTTCT-TC
1 TTT-TTCTTCTCTC
24535689 TT
1 TT
24535691 CGGGCTGAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
10 3 0.07
11 3 0.07
12 12 0.27
13 26 0.59
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTCTTCTCTC
Found at i:24535903 original size:17 final size:17
Alignment explanation
Indices: 24535881--24535923 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
24535871 AAGTGCGACA
24535881 GTGGTGGTGGTGTCACG
1 GTGGTGGTGGTGTCACG
24535898 GTGGTGGTGGTGTCACG
1 GTGGTGGTGGTGTCACG
*
24535915 GTGGCGGTG
1 GTGGTGGTG
24535924 CGACGACGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.05, C:0.12, G:0.56, T:0.28
Consensus pattern (17 bp):
GTGGTGGTGGTGTCACG
Found at i:24536304 original size:30 final size:30
Alignment explanation
Indices: 24536258--24536393 Score: 105
Period size: 30 Copynumber: 4.6 Consensus size: 30
24536248 AAAAAAATAT
** * *
24536258 GGGCCAAAATGCAATTTTTGAAAATTTTAG
1 GGGCCAAAATATAATTTTAGAAAAGTTTAG
* *
24536288 GGGCCCAAATATAA-TTTACAAAA-TATTAG
1 GGGCCAAAATATAATTTTAGAAAAGT-TTAG
* * * ** *
24536317 GGGTCAATATGTAAACTTAGAAAAGGTTAG
1 GGGCCAAAATATAATTTTAGAAAAGTTTAG
* * *
24536347 GGGTCAAAATGTAATTTTTGAAAAGTTTAG
1 GGGCCAAAATATAATTTTAGAAAAGTTTAG
*
24536377 GGGCTAAAATATAATTT
1 GGGCCAAAATATAATTT
24536394 GTATTTTTTT
Statistics
Matches: 83, Mismatches: 20, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
28 1 0.01
29 21 0.25
30 61 0.73
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (30 bp):
GGGCCAAAATATAATTTTAGAAAAGTTTAG
Found at i:24538397 original size:41 final size:37
Alignment explanation
Indices: 24538349--24538449 Score: 94
Period size: 37 Copynumber: 2.6 Consensus size: 37
24538339 TCGACCTTGA
24538349 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-AC--TTACTTCGGATAG
* ** ** * *
24538389 ATTCGATGAGGTACTGGGTACCAACTTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTTACTTCGGATAG
*
24538427 GCCGATGAGACACTGGGTGTCAA
1 GTCGATGAGACACTGGGTGTCAA
24538450 TTATTGCTTC
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
37 17 0.36
38 11 0.23
40 2 0.04
41 17 0.36
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (37 bp):
GTCGATGAGACACTGGGTGTCAACTTACTTCGGATAG
Found at i:24540319 original size:75 final size:74
Alignment explanation
Indices: 24539993--24540733 Score: 1003
Period size: 75 Copynumber: 9.9 Consensus size: 74
24539983 CCTCGGCATA
* * * *
24539993 TGACCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGGAAAATAGAAATTAAAATA
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA-A
24540058 TACCTCAGCATG
65 TACCTCAGC--G
* * * *
24540070 TGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT-TAAAA-AGAAATTAAAAAT
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAT
*
24540133 ACCTCGGCG
66 ACCTCAGCG
* *
24540142 TGCAGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAA
1 TG-A-CCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
* *
24540207 AAACCTCGGCATG
64 ATACCTCAGC--G
*
24540220 TGACCCTAGAG-TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAA
1 TGACCCAAG-GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAA
24540284 ATACCTCAGCG
64 ATACCTCAGCG
* **
24540295 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAAATTGAAAA
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAA
24540360 TACCTCAGCG
65 TACCTCAGCG
* *
24540370 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTTGAAAAACAGAAA-TGAAAAT
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAT
*
24540434 ACCTCAGGATG
66 ACCTCA-G-CG
*
24540445 TGACCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAA-TGAAAAT
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAT
*
24540509 ACCTCAGGATG
66 ACCTCA-G-CG
* *
24540520 TGACCCAAGGCTCAACTCACCTTTCGCAATATTAGTTGATTTTTTGAAAAACAGAAA-TGAAAAT
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAT
24540584 ACCTCAG-G
66 ACCTCAGCG
* *
24540592 ATGTAACCTAAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAA-TGAA
1 -TG--ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAA
*
24540656 AATACCTCAGGATG
63 AATACCTCA-G-CG
*
24540670 TGACCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA
1 TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA
24540734 ATATAATTCT
Statistics
Matches: 612, Mismatches: 34, Indels: 37
0.90 0.05 0.05
Matches are distributed among these distances:
72 4 0.01
73 16 0.03
74 69 0.11
75 380 0.62
76 62 0.10
77 77 0.13
78 4 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (74 bp):
TGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAT
ACCTCAGCG
Found at i:24546671 original size:16 final size:17
Alignment explanation
Indices: 24546631--24546798 Score: 54
Period size: 18 Copynumber: 9.1 Consensus size: 17
24546621 CGTGATCCGA
*
24546631 TTGAAACACGATATTTTT
1 TTGAAACACGAGA-TTTT
*
24546649 TTAAAACACGAGA-TTT
1 TTGAAACACGAGATTTT
* *
24546665 TTGAAACACCATAATAATTTT
1 TTGAAACA-C--GA-GATTTT
* **
24546686 TTGAAAACACGAAAACTT
1 TTG-AAACACGAGATTTT
* *
24546704 TTGAAACAAGAACATTTTTT
1 TTGAAACACG-AGA--TTTT
* *
24546724 TTGAAAACACGAAAATTT
1 TTG-AAACACGAGATTTT
24546742 TT-AAACACGAGAACTTTTTTT
1 TTGAAACACGAG-A----TTTT
* *
24546763 TTGAAAACACGAAATTCT
1 TTG-AAACACGAGATTTT
24546781 TTGAAACACGA-ATTTT
1 TTGAAACACGAGATTTT
24546797 TT
1 TT
24546799 TTTTGAAAAC
Statistics
Matches: 113, Mismatches: 20, Indels: 36
0.67 0.12 0.21
Matches are distributed among these distances:
16 24 0.21
17 16 0.14
18 31 0.27
19 2 0.02
20 8 0.07
21 18 0.16
22 6 0.05
23 8 0.07
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (17 bp):
TTGAAACACGAGATTTT
Found at i:24546706 original size:39 final size:38
Alignment explanation
Indices: 24546631--24546896 Score: 252
Period size: 38 Copynumber: 7.2 Consensus size: 38
24546621 CGTGATCCGA
*
24546631 TTGAAACACG--ATATTTTTTT-AAAACACG-AGATTT
1 TTGAAACACGAAATATTTTTTTGAAAACACGAAAATTT
* * *
24546665 TTGAAACACCATAATAATTTTTTGAAAACACGAAAACTT
1 TTGAAACACGA-AATATTTTTTTGAAAACACGAAAATTT
*
24546704 TTGAAACAAGAACAT-TTTTTTTGAAAACACGAAAATTT
1 TTGAAACACGAA-ATATTTTTTTGAAAACACGAAAATTT
*
24546742 TT-AAACACGAGAACTTTTTTTTTGAAAACACG-AAATTCT
1 TTGAAACACGA-AA-TATTTTTTTGAAAACACGAAAATT-T
* * * *
24546781 TTGAAACACGAATTTTTTTTTTGAAAACGCTAAAATTT
1 TTGAAACACGAAATATTTTTTTGAAAACACGAAAATTT
* * *
24546819 TTGAAACACTAAAT-TTTTTTTGAAAACGCTAAAAATTT
1 TTGAAACACGAAATATTTTTTTGAAAACAC-GAAAATTT
*
24546857 TT-AAACACGAGAA-A-TTTTTT--AAACACGAAATTTT
1 TTGAAACACGA-AATATTTTTTTGAAAACACGAAAATTT
24546891 TTGAAA
1 TTGAAA
24546897 AGACGTATCG
Statistics
Matches: 197, Mismatches: 19, Indels: 31
0.80 0.08 0.13
Matches are distributed among these distances:
34 17 0.09
35 8 0.04
37 45 0.23
38 79 0.40
39 40 0.20
40 8 0.04
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (38 bp):
TTGAAACACGAAATATTTTTTTGAAAACACGAAAATTT
Found at i:24546774 original size:77 final size:75
Alignment explanation
Indices: 24546631--24546896 Score: 237
Period size: 77 Copynumber: 3.6 Consensus size: 75
24546621 CGTGATCCGA
* * * **
24546631 TTGAAACACGATA-TTTTTTT-AAAACACG-AGATTTTTGAAACACCATAATAATTTTTTGAAAA
1 TTGAAACAAGAAATTTTTTTTGAAAACACGAAAATTTTTGAAACACCA-AATTTTTTTTTGAAAA
*
24546693 CACGAAAACTT
65 CACGAAAAATT
*
24546704 TTGAAACAAGAACATTTTTTTTGAAAACACGAAAATTTTT-AAACACGAGAACTTTTTTTTTGAA
1 TTGAAACAAGAA-ATTTTTTTTGAAAACACGAAAATTTTTGAAACACCA-AA-TTTTTTTTTGAA
*
24546768 AACACG-AAATTCT
63 AACACGAAAAAT-T
* * * * *
24546781 TTGAAACACGAATTTTTTTTTTGAAAACGCTAAAATTTTTGAAACACTAAA-TTTTTTTTGAAAA
1 TTGAAACAAGAA-ATTTTTTTTGAAAACACGAAAATTTTTGAAACACCAAATTTTTTTTTGAAAA
* *
24546845 CGCTAAAAATT
65 CACGAAAAATT
* *
24546856 TTTAAACACGAGAAA--TTTTTT--AAACACGAAATTTTTTGAAA
1 TTGAAACA--AGAAATTTTTTTTGAAAACACGAAAATTTTTGAAA
24546897 AGACGTATCG
Statistics
Matches: 160, Mismatches: 23, Indels: 21
0.78 0.11 0.10
Matches are distributed among these distances:
72 17 0.11
73 10 0.06
74 7 0.04
75 30 0.19
76 25 0.16
77 64 0.40
78 7 0.04
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (75 bp):
TTGAAACAAGAAATTTTTTTTGAAAACACGAAAATTTTTGAAACACCAAATTTTTTTTTGAAAAC
ACGAAAAATT
Found at i:24546857 original size:19 final size:19
Alignment explanation
Indices: 24546798--24546858 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
24546788 ACGAATTTTT
24546798 TTTTTGAAAACGCT-AAAA
1 TTTTTGAAAACGCTAAAAA
* **
24546816 TTTTTG-AAACACTAAATTT
1 TTTTTGAAAACGCTAAA-AA
24546835 TTTTTGAAAACGCTAAAAA
1 TTTTTGAAAACGCTAAAAA
24546854 TTTTT
1 TTTTT
24546859 AAACACGAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 6 0.18
18 8 0.24
19 11 0.32
20 9 0.26
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (19 bp):
TTTTTGAAAACGCTAAAAA
Found at i:24546886 original size:16 final size:17
Alignment explanation
Indices: 24546854--24546892 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
24546844 ACGCTAAAAA
24546854 TTTTTAAACACGAGAAAT
1 TTTTTAAACAC-AGAAAT
24546872 TTTTTAAACAC-GAAAT
1 TTTTTAAACACAGAAAT
24546888 TTTTT
1 TTTTT
24546893 GAAAAGACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.48
18 11 0.52
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (17 bp):
TTTTTAAACACAGAAAT
Found at i:24547519 original size:20 final size:22
Alignment explanation
Indices: 24547494--24547545 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
24547484 ATGCTAGCCT
24547494 GCTGCTGGAACGGGCCTG-AG-
1 GCTGCTGGAACGGGCCTGCAGA
* *
24547514 GCTGCTGGAGCTGGCCTGCTAGA
1 GCTGCTGGAACGGGCCTGC-AGA
24547537 GCTGCTGGA
1 GCTGCTGGA
24547546 CGTTGGGCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 16 0.59
22 2 0.07
23 9 0.33
ACGTcount: A:0.13, C:0.25, G:0.42, T:0.19
Consensus pattern (22 bp):
GCTGCTGGAACGGGCCTGCAGA
Found at i:24547714 original size:13 final size:13
Alignment explanation
Indices: 24547692--24547750 Score: 63
Period size: 13 Copynumber: 4.7 Consensus size: 13
24547682 GACTGTGATA
24547692 TTTT-TTCTCTTT
1 TTTTCTTCTCTTT
*
24547704 TTTTCTTCTCTCT
1 TTTTCTTCTCTTT
24547717 TTTTCTTCT-TTCT
1 TTTTCTTCTCTT-T
24547730 TTTT-TT-TCTTT
1 TTTTCTTCTCTTT
24547741 TTCTTCTTCT
1 TT-TTCTTCT
24547751 TCTGGCTGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 4 0.10
12 11 0.28
13 23 0.59
14 1 0.03
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTTCTCTTT
Found at i:24547731 original size:28 final size:28
Alignment explanation
Indices: 24547695--24547753 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
24547685 TGTGATATTT
*
24547695 TTTCTCTTTTTTTCTTCTCTCTTTTTCTTC
1 TTTCT-TTTTTTTCTT-TCTCTTCTTCTTC
*
24547725 TTTCTTTTTTTTCTTTTTCTTCTTCTTC
1 TTTCTTTTTTTTCTTTCTCTTCTTCTTC
24547753 T
1 T
24547754 GGCTGAACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 12 0.44
29 10 0.37
30 5 0.19
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTCTTTTTTTTCTTTCTCTTCTTCTTC
Found at i:24547743 original size:15 final size:15
Alignment explanation
Indices: 24547693--24547745 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
24547683 ACTGTGATAT
24547693 TTTTTCTCTTTTTTTC
1 TTTTTCT-TTTTTTTC
* *
24547709 -TTCTC-TCTTTTTC
1 TTTTTCTTTTTTTTC
24547722 TTCTTTCTTTTTTTTC
1 TT-TTTCTTTTTTTTC
24547738 TTTTTCTT
1 TTTTTCTT
24547746 CTTCTTCTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 13 0.43
16 9 0.30
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTCTTTTTTTTC
Found at i:24548412 original size:30 final size:29
Alignment explanation
Indices: 24548354--24548437 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 29
24548344 TTACAAAATA
* *
24548354 TTAGGGGTCAATATGTAACTTTATAAAAGG
1 TTAGGGGTCAAAATGTAA-TTTTTAAAAGG
* *
24548384 TTGGGGGTCAAAATGTAATTTTTGAAAAGT
1 TTAGGGGTCAAAATGTAATTTTT-AAAAGG
24548414 TTAGGGG-CTAAAATGTAATTTTTA
1 TTAGGGGTC-AAAATGTAATTTTTA
24548438 TTTTTGTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 6 0.13
30 41 0.87
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (29 bp):
TTAGGGGTCAAAATGTAATTTTTAAAAGG
Done.