Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 92 of 172
Found at i:26618292 original size:24 final size:24
Alignment explanation
Indices: 26618222--26618343 Score: 84
Period size: 24 Copynumber: 5.1 Consensus size: 24
26618212 TTAGTCATAC
* * **
26618222 AAATCACAGACAAATCAGTCATAC
1 AAATCACAGAAAAATCAATCATTT
* ** * *
26618246 CAATCACAGGTAAATTATTCATTT
1 AAATCACAGAAAAATCAATCATTT
*
26618270 AAATCACAGAAAAATCAGTCATTT
1 AAATCACAGAAAAATCAATCATTT
* * *
26618294 ACACCTC-GAACAAATCAATCATTT
1 AAATCACAGAA-AAATCAATCATTT
* * *
26618318 ACATCACAGATATATCAATCATTT
1 AAATCACAGAAAAATCAATCATTT
26618342 AA
1 AA
26618344 CCCCGATGGG
Statistics
Matches: 75, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
23 3 0.04
24 70 0.93
25 2 0.03
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.27
Consensus pattern (24 bp):
AAATCACAGAAAAATCAATCATTT
Found at i:26624134 original size:27 final size:27
Alignment explanation
Indices: 26624104--26624156 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
26624094 CTAGACCTTT
* **
26624104 TGGTGAATACCAGCTCGGTAGGTCTAC
1 TGGTGAACACCAGCTCGCCAGGTCTAC
26624131 TGGTGAACACCAGCTCGCCAGGTCTA
1 TGGTGAACACCAGCTCGCCAGGTCTA
26624157 TTAGTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (27 bp):
TGGTGAACACCAGCTCGCCAGGTCTAC
Found at i:26628946 original size:25 final size:25
Alignment explanation
Indices: 26628887--26628950 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
26628877 AATTCTCAAA
* *
26628887 TCGTATGAGCTTACCGATTTACAGC
1 TCGTATGAGCATACCGATTCACAGC
* *
26628912 TTGTGA-GAGCATACTGATTCACAGC
1 TCGT-ATGAGCATACCGATTCACAGC
26628937 TCGTATGAGCATAC
1 TCGTATGAGCATAC
26628951 ATGTACAGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 1 0.03
25 30 0.94
26 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
TCGTATGAGCATACCGATTCACAGC
Found at i:26637290 original size:27 final size:27
Alignment explanation
Indices: 26637260--26637517 Score: 306
Period size: 27 Copynumber: 9.6 Consensus size: 27
26637250 AGGGGTATAA
* * *
26637260 CAGTCATTTTACCTTATTG-GGTTATTT
1 CAGTCATTTTACCCT-TCGAGGGTATTT
*
26637287 CAGTCATTTCACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** * * *
26637314 TGGTTATTTTATCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
26637341 TGGTCATTTTACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
26637368 C-GATTATTTTACCCTTCGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
*
26637395 CAGTCATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
26637422 CAGTCATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
26637449 TGGTCATTTTACCCTTC-AGGGGTATAT
1 CAGTCATTTTACCCTTCGA-GGGTATTT
26637476 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
26637503 CAGTCATTTTACCCT
1 CAGTCATTTTACCCT
26637518 ATGGGATATT
Statistics
Matches: 198, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 193 0.97
28 2 0.01
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:26644971 original size:26 final size:27
Alignment explanation
Indices: 26644940--26645009 Score: 126
Period size: 26 Copynumber: 2.7 Consensus size: 27
26644930 CATTCCGTCC
26644940 CACAGCTCGTGTGAGCAAG-CCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
26644966 CACAGCTCGTGTGAGC-AGACCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
26644992 CACAGCTCGTGTGAGCAA
1 CACAGCTCGTGTGAGCAA
26645010 TGATATAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.05
26 39 0.93
27 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAAGACCCATTT
Found at i:26650990 original size:15 final size:16
Alignment explanation
Indices: 26650962--26650992 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26650952 CTCCATGAAG
26650962 TGTACAATCTCTACAA
1 TGTACAATCTCTACAA
26650978 TGTACAA-CTCTACAA
1 TGTACAATCTCTACAA
26650993 CTTCTGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (16 bp):
TGTACAATCTCTACAA
Found at i:26653774 original size:22 final size:23
Alignment explanation
Indices: 26653730--26653774 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26653720 AATTCTACTT
* *
26653730 GTAAAAATGCAGACAAGTTGCCA
1 GTAAAAATGCAGACAAATCGCCA
*
26653753 GTAAAAATGC-GATAAATCGCCA
1 GTAAAAATGCAGACAAATCGCCA
26653775 TTCCCCTCAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (23 bp):
GTAAAAATGCAGACAAATCGCCA
Found at i:26660962 original size:20 final size:20
Alignment explanation
Indices: 26660937--26660976 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26660927 TCAAGCAGCG
26660937 TAAACATAGAATTAAAATAA
1 TAAACATAGAATTAAAATAA
26660957 TAAACATAGAATTAAAATAA
1 TAAACATAGAATTAAAATAA
26660977 ACGATAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
TAAACATAGAATTAAAATAA
Found at i:26663328 original size:41 final size:41
Alignment explanation
Indices: 26663271--26663354 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26663261 AACCTAAGTC
26663271 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
1 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
26663312 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
1 TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
26663353 TG
1 TG
26663355 GACCTCAATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (41 bp):
TGCTCACACAAGCTGACAGTCGAAATGTAGCTATAGGATGT
Found at i:26673638 original size:68 final size:68
Alignment explanation
Indices: 26673534--26673777 Score: 199
Period size: 68 Copynumber: 3.6 Consensus size: 68
26673524 ATAGTCGAGT
* * *
26673534 TATGGTCTTACACATTGA-AACCCCATGTTCATTGTCCTGGCGCAGT-TCATATATTGCCATAAT
1 TATGGTCTTACACATT-ATAACCCCATGTTTATTGTCCTGGCGCACTCT-ATATATTGCCATAAC
26673597 TAAGC
64 TAAGC
* * * ** * * * * *
26673602 TATGGTCTTACACATTCTAGCCCCATGTTTAATGTCCCAGTGGACTCTATATGTTGCCATAGCTG
1 TATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGGCGCACTCTATATATTGCCATAACTA
26673667 AGC
66 AGC
* * * * * * ** ** *
26673670 TATGGTTTTACAAATTATAACCCCATGTTTATTGTCCTGGTGGACTCCATATGTTGTGATAGTTG
1 TATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGGCGCACTCTATATATTGCCATAACTA
26673735 AGC
66 AGC
* *
26673738 TATGGTCTTACATACTGA-AACCCC-TGTTTATTGTCCTGGC
1 TATGGTCTTACACA-TTATAACCCCATGTTTATTGTCCTGGC
26673778 AGACTTTTGA
Statistics
Matches: 145, Mismatches: 28, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
67 15 0.10
68 127 0.88
69 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (68 bp):
TATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGGCGCACTCTATATATTGCCATAACTA
AGC
Found at i:26683023 original size:21 final size:21
Alignment explanation
Indices: 26682999--26683040 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26682989 AACACCAAAA
26682999 CTCATTCAAGAACATTAATGG
1 CTCATTCAAGAACATTAATGG
26683020 CTCATTCAAGAACATTAATGG
1 CTCATTCAAGAACATTAATGG
26683041 GAAATCCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
CTCATTCAAGAACATTAATGG
Found at i:26693012 original size:28 final size:28
Alignment explanation
Indices: 26692960--26693039 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
26692950 TAGTATCAGT
* *
26692960 ACAATGTAGGCCTTAGCCCATTACAATA
1 ACAATGTGGGCCTTAGCCCAATACAATA
* *
26692988 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAATGTGGGCCTTAGCCCAATACAATA
* *
26693016 ACAATGTGAGCCTTAGCCGAATAC
1 ACAATGTGGGCCTTAGCCCAATAC
26693040 GGTAATTAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (28 bp):
ACAATGTGGGCCTTAGCCCAATACAATA
Found at i:26693044 original size:28 final size:28
Alignment explanation
Indices: 26692956--26693044 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
26692946 TGTATAGTAT
*
26692956 CAGT-ACAATGT-AGGCCTTAGCCCATTA
1 CAGTAACAATGTGA-GCCTTAGCCCAATA
* * *
26692983 CAATAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAATGTGAGCCTTAGCCCAATA
*
26693011 CAGTAACAATGTGAGCCTTAGCCGAATA
1 CAGTAACAATGTGAGCCTTAGCCCAATA
*
26693039 CGGTAA
1 CAGTAA
26693045 TTAGTACAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 3 0.06
28 48 0.94
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (28 bp):
CAGTAACAATGTGAGCCTTAGCCCAATA
Found at i:26695082 original size:27 final size:27
Alignment explanation
Indices: 26695052--26695169 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 27
26695042 GGAATAACGG
26695052 TCATTTTAGCCAATAGGG-GTATTTCGA
1 TCATTTTA-CCAATAGGGAGTATTTCGA
** * * *
26695079 TCATTTTACCCTTTGGGAGTATTTTGG
1 TCATTTTACCAATAGGGAGTATTTCGA
*
26695106 TCATTTTACCCTATAGGG-GTATTTC-A
1 TCATTTTA-CCAATAGGGAGTATTTCGA
* * *
26695132 GTCATTTTACCATTTGGGAGTATTTCGG
1 -TCATTTTACCAATAGGGAGTATTTCGA
26695160 TCATTTTACC
1 TCATTTTACC
26695170 CTTCGAGGGT
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
26 12 0.17
27 54 0.75
28 6 0.08
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
TCATTTTACCAATAGGGAGTATTTCGA
Found at i:26695181 original size:27 final size:27
Alignment explanation
Indices: 26695068--26695491 Score: 494
Period size: 27 Copynumber: 15.7 Consensus size: 27
26695058 TAGCCAATAG
* * *
26695068 GGGTATTTCGATCATTTTACCCTTTG-
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * *
26695094 GGAGTATTTTGGTCATTTTACCCTATAG-
1 GG-GTATTTCGGTAATTTTACCCT-TCGA
* * * *
26695122 GGGTATTTCAGTCATTTTACCATTTG-
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695148 GGAGTATTTCGGTCATTTTACCCTTCGA
1 GG-GTATTTCGGTAATTTTACCCTTCGA
26695176 GGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695203 GGGTATTTTGGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
26695230 GGGTATTTCAGTAATTTTACCCTTTGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
26695257 GGGTATTTCGGTAAATTTACCCCTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* ** *
26695284 TGGTATTTTAGTAATTTTACCCTTCAA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * **
26695311 GCGTATTTCGATAATTTTATGCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695338 GGGTATTTCGGTAATTTTACCATTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695365 GGGTATTTCGATAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695392 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* ****
26695419 TGGTATTTTAAAAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695446 GGGTATTTCGGTAATTTTACCTTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
26695473 GGGTATTTCAGTAATTTTA
1 GGGTATTTCGGTAATTTTA
26695492 GGCCTATTAC
Statistics
Matches: 341, Mismatches: 53, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
26 6 0.02
27 329 0.96
28 6 0.02
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACCCTTCGA
Found at i:26702142 original size:28 final size:28
Alignment explanation
Indices: 26702071--26702151 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
26702061 ATTAGTACAG
*
26702071 TGTGAGCCTTACCCCATTACAGTAACAA
1 TGTGAGCCTTACCCCAATACAGTAACAA
* * *
26702099 TGTGGGCTTTAGCCCAATACAGTAACAA
1 TGTGAGCCTTACCCCAATACAGTAACAA
*
26702127 TGTGAGCCTT-CACCCAATAAAGTAA
1 TGTGAGCCTTAC-CCCAATACAGTAA
26702152 TTAGTACAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (28 bp):
TGTGAGCCTTACCCCAATACAGTAACAA
Found at i:26702312 original size:26 final size:26
Alignment explanation
Indices: 26702263--26702313 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26702253 CCAATAATAA
* *
26702263 TAACGTAGCAAAGTTGCCACTAACAT
1 TAACGTAGCAAAGCTACCACTAACAT
*
26702289 TAACGTAGCAAAGCTACCAGTAACA
1 TAACGTAGCAAAGCTACCACTAACA
26702314 GTATATGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.20
Consensus pattern (26 bp):
TAACGTAGCAAAGCTACCACTAACAT
Found at i:26702527 original size:27 final size:27
Alignment explanation
Indices: 26702506--26702666 Score: 162
Period size: 27 Copynumber: 6.0 Consensus size: 27
26702496 GGGGTATAAC
*
26702506 GGTCAGTTTACCCTATAAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* *
26702533 AGTCATTTTACCCTTTAAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
*
26702560 GGTCAGTTTACCCTTTGAGGGTATTTT
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * ** *
26702587 AGTCATTTTACACTTCGAGGGTATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* * * *
26702614 GATCATTTTACCCTTCAAGGGTATTTC
1 GGTCAGTTTACCCTTTAAGGGTATTTT
* *
26702641 GGTAATTTTA-CCTTTCAAGGGTATTT
1 GGTCAGTTTACCCTTT-AAGGGTATTT
26702667 CAATAATTTT
Statistics
Matches: 115, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 4 0.03
27 111 0.97
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
GGTCAGTTTACCCTTTAAGGGTATTTT
Found at i:26702610 original size:81 final size:81
Alignment explanation
Indices: 26702535--26702758 Score: 288
Period size: 81 Copynumber: 2.8 Consensus size: 81
26702525 GGTATTTTAG
* * * * * * *
26702535 TCATTTTACCCTTTAAGGGTATTTTGGTCAGTTTACCCTTTGAGGGTATTTTAGTCATTTTACAC
1 TCATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTCAATAATTTTACAC
26702600 TTCGAGGGTATTTCGA
66 TTCGAGGGTATTTCGA
* *
26702616 TCATTTTACCCTTCAAGGGTATTTCGGTAATTTTA-CCTTTCAAGGGTATTTCAATAATTTTACC
1 TCATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTT-GAGGGTATTTCAATAATTTTACA
26702680 CTTCGAGGGTATTTCGA
65 CTTCGAGGGTATTTCGA
* * ** * **
26702697 TAATTTTACCCTTCGAGAATATTTCGATAATTTTACCCTTTGAGGGTATTTCGGTAATTTTA
1 TCATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTCAATAATTTTA
26702759 GGCCCATTAC
Statistics
Matches: 124, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
80 5 0.04
81 114 0.92
82 5 0.04
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.44
Consensus pattern (81 bp):
TCATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTCAATAATTTTACAC
TTCGAGGGTATTTCGA
Found at i:26702649 original size:54 final size:54
Alignment explanation
Indices: 26702523--26702758 Score: 265
Period size: 54 Copynumber: 4.4 Consensus size: 54
26702513 TTACCCTATA
** * * * * * * *
26702523 AGGGTATTTTAGTCATTTTACCCTTTAAGGGTATTTTGGTCAGTTTACCCTTTG
1 AGGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCG
** * * * * *
26702577 AGGGTATTTTAGTCATTTTACACTTCGAGGGTATTTCGATCATTTTACCCTTCA
1 AGGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCG
* *
26702631 AGGGTATTTCGGTAATTTTACCTTTCAAGGGTATTTCAATAATTTTACCCTTCG
1 AGGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCG
* * ** *
26702685 AGGGTATTTCGATAATTTTACCCTTCGAGAATATTTCGATAATTTTACCCTTTG
1 AGGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCG
26702739 AGGGTATTTCGGTAATTTTA
1 AGGGTATTTCGGTAATTTTA
26702759 GGCCCATTAC
Statistics
Matches: 157, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 157 1.00
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.44
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCG
Found at i:26702667 original size:27 final size:27
Alignment explanation
Indices: 26702523--26702758 Score: 201
Period size: 27 Copynumber: 8.7 Consensus size: 27
26702513 TTACCCTATA
** * *
26702523 AGGGTATTTTAGTCATTTTACCCTTT-A
1 AGGGTATTTCGGTAATTTTA-CCTTTCG
* * *
26702550 AGGGTATTTTGGTCAGTTTACCCTTT-G
1 AGGGTATTTCGGTAATTTTA-CCTTTCG
** *
26702577 AGGGTATTTTAGTCATTTTACAC-TTCG
1 AGGGTATTTCGGTAATTTTAC-CTTTCG
* * * *
26702604 AGGGTATTTCGATCATTTTACCCTTCA
1 AGGGTATTTCGGTAATTTTACCTTTCG
*
26702631 AGGGTATTTCGGTAATTTTACCTTTCA
1 AGGGTATTTCGGTAATTTTACCTTTCG
** *
26702658 AGGGTATTTCAATAATTTTACCCTTCG
1 AGGGTATTTCGGTAATTTTACCTTTCG
* *
26702685 AGGGTATTTCGATAATTTTACCCTTCG
1 AGGGTATTTCGGTAATTTTACCTTTCG
** *
26702712 AGAATATTTCGATAATTTTACCCTTT-G
1 AGGGTATTTCGGTAATTTTA-CCTTTCG
26702739 AGGGTATTTCGGTAATTTTA
1 AGGGTATTTCGGTAATTTTA
26702759 GGCCCATTAC
Statistics
Matches: 182, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.02
27 174 0.96
28 4 0.02
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACCTTTCG
Found at i:26707298 original size:14 final size:14
Alignment explanation
Indices: 26707279--26707306 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26707269 ATAGGTTCAG
26707279 GAATCTCATGAATC
1 GAATCTCATGAATC
26707293 GAATCTCATGAATC
1 GAATCTCATGAATC
26707307 TATATATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
GAATCTCATGAATC
Found at i:26710193 original size:17 final size:16
Alignment explanation
Indices: 26710173--26710234 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
26710163 AAAGTAGAGG
26710173 AATAAAATAAAGAAATT
1 AATAAAATAAA-AAATT
26710190 AATAAAATTAATAAAA-T
1 AATAAAA-TAA-AAAATT
* *
26710207 ACT-AAATAAAAAATAA
1 AATAAAATAAAAAAT-T
26710223 AATAAAATAAAA
1 AATAAAATAAAA
26710235 TAAAGAAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 4 0.11
15 3 0.08
16 5 0.14
17 18 0.49
18 6 0.16
19 1 0.03
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (16 bp):
AATAAAATAAAAAATT
Found at i:26716361 original size:23 final size:24
Alignment explanation
Indices: 26716333--26716403 Score: 92
Period size: 23 Copynumber: 2.9 Consensus size: 24
26716323 CGAGCTAAAG
26716333 AACGGTAAGCTC-TATCGAGCTGA-
1 AACGGTAAGCTCATA-CGAGCTGAT
*
26716356 AACGGTAAGCTCATAAGAGCTGAT
1 AACGGTAAGCTCATACGAGCTGAT
26716380 ATAGCGGTAAGCTCATACGAGCTG
1 A-A-CGGTAAGCTCATACGAGCTG
26716404 TGGTGAGTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 19 0.45
24 3 0.07
25 1 0.02
26 19 0.45
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (24 bp):
AACGGTAAGCTCATACGAGCTGAT
Found at i:26719369 original size:23 final size:23
Alignment explanation
Indices: 26719339--26719384 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
26719329 CTTTCTTATT
* *
26719339 GTAGTAATTTTTGGGGTATTACA
1 GTAGTAATTTTCGGGATATTACA
26719362 GTAGTAATTTTCGGGATATTACA
1 GTAGTAATTTTCGGGATATTACA
26719385 CATAATCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTACA
Found at i:26726168 original size:6 final size:6
Alignment explanation
Indices: 26726120--26726170 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
26726110 AAAAAATTCC
* *
26726120 TATTAT TATTATT TATTTT TACTATTT TA-TTT TATTTT CATTTT TATTTT
1 TATTTT TATT-TT TATTTT TA-T-TTT TATTTT TATTTT TATTTT TATTTT
26726170 T
1 T
26726171 GCAGGAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.13
6 22 0.58
7 6 0.16
8 5 0.13
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (6 bp):
TATTTT
Found at i:26745208 original size:6 final size:6
Alignment explanation
Indices: 26745199--26745244 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
26745189 TTATTATCAT
* *
26745199 ATTATC ATTA-C ATTA-C TATTATT ATTATC ATTATT ATTATC ATTAT
1 ATTATC ATTATC ATTATC -ATTATC ATTATC ATTATC ATTATC ATTAT
26745245 TGTTGTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 6 0.18
6 28 0.82
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (6 bp):
ATTATC
Found at i:26745231 original size:12 final size:12
Alignment explanation
Indices: 26745198--26745245 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
26745188 TTTATTATCA
26745198 TATTATCATTA-
1 TATTATCATTAT
*
26745209 CATTA-CTATTAT
1 TATTATC-ATTAT
26745221 TATTATCATTAT
1 TATTATCATTAT
26745233 TATTATCATTAT
1 TATTATCATTAT
26745245 T
1 T
26745246 GTTGTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 1 0.03
11 8 0.25
12 22 0.69
13 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTATCATTAT
Found at i:26752447 original size:13 final size:13
Alignment explanation
Indices: 26752425--26752457 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
26752415 TTACCGCACG
*
26752425 CAAGGGTAGATCT
1 CAAGGTTAGATCT
26752438 CAAGGTTAGATCT
1 CAAGGTTAGATCT
26752451 CAAGGTT
1 CAAGGTT
26752458 TCAAAAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (13 bp):
CAAGGTTAGATCT
Found at i:26754253 original size:12 final size:12
Alignment explanation
Indices: 26754219--26754254 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
26754209 GCCATCATTC
26754219 TTATCTATATTT
1 TTATCTATATTT
* *
26754231 TTATTTGTATTT
1 TTATCTATATTT
26754243 TTATCTATATTT
1 TTATCTATATTT
26754255 ACATATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (12 bp):
TTATCTATATTT
Found at i:26763103 original size:18 final size:18
Alignment explanation
Indices: 26763080--26763114 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26763070 ACGATGTGCC
26763080 AAACTATTTTCATGCTTG
1 AAACTATTTTCATGCTTG
*
26763098 AAACTATTTTTATGCTT
1 AAACTATTTTCATGCTT
26763115 CCTGTTCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.49
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:26774571 original size:17 final size:18
Alignment explanation
Indices: 26774538--26774571 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26774528 CAATAACAAG
26774538 AAGCATCAAATTAGTTTC
1 AAGCATCAAATTAGTTTC
*
26774556 AAGCATGAAA-TAGTTT
1 AAGCATCAAATTAGTTT
26774572 GGCAAGTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (18 bp):
AAGCATCAAATTAGTTTC
Found at i:26776864 original size:7 final size:7
Alignment explanation
Indices: 26776852--26776877 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26776842 TGGAAAATTT
26776852 GAGAGAA
1 GAGAGAA
26776859 GAGAGAA
1 GAGAGAA
26776866 GAGAGAA
1 GAGAGAA
26776873 GAGAG
1 GAGAG
26776878 TGTAGTAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (7 bp):
GAGAGAA
Found at i:26780715 original size:13 final size:13
Alignment explanation
Indices: 26780699--26780762 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
26780689 TTTAAACCAA
*
26780699 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
*
26780712 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
26780725 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
26780738 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
26780751 ACATTTCAAAAG
1 ACTTTTCAAAAG
26780763 TATTGCCAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:26781487 original size:20 final size:20
Alignment explanation
Indices: 26781462--26781499 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26781452 ATACCATTTA
26781462 GTTTTGTTCTGCTCTATTAT
1 GTTTTGTTCTGCTCTATTAT
* *
26781482 GTTTTGTTTTGTTCTATT
1 GTTTTGTTCTGCTCTATT
26781500 GTACTACCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.11, G:0.16, T:0.66
Consensus pattern (20 bp):
GTTTTGTTCTGCTCTATTAT
Found at i:26786127 original size:28 final size:28
Alignment explanation
Indices: 26786087--26786140 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
26786077 ATTTAGCATG
* *
26786087 TAATTTTTTAGTTGATCAAACAACACTT
1 TAATTTCTCAGTTGATCAAACAACACTT
* *
26786115 TAATTTCTCAGTTTATCAAATAACAC
1 TAATTTCTCAGTTGATCAAACAACAC
26786141 CTAAAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.41
Consensus pattern (28 bp):
TAATTTCTCAGTTGATCAAACAACACTT
Found at i:26802094 original size:18 final size:19
Alignment explanation
Indices: 26802071--26802107 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
26802061 GTCATTAAGG
26802071 TGGAAATTAA-CCCAAATT
1 TGGAAATTAACCCCAAATT
26802089 TGGAAATTAACCCCAAATT
1 TGGAAATTAACCCCAAATT
26802108 GGTTTGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (19 bp):
TGGAAATTAACCCCAAATT
Found at i:26812937 original size:42 final size:42
Alignment explanation
Indices: 26812878--26812968 Score: 173
Period size: 42 Copynumber: 2.2 Consensus size: 42
26812868 TATTTGCAAG
*
26812878 TATACTAAACACATGATATGATACATAATCATTTCAAAGACT
1 TATACTAAACACATGATATGATACATAATCATTGCAAAGACT
26812920 TATACTAAACACATGATATGATACATAATCATTGCAAAGACT
1 TATACTAAACACATGATATGATACATAATCATTGCAAAGACT
26812962 TATACTA
1 TATACTA
26812969 GCTTGCAGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (42 bp):
TATACTAAACACATGATATGATACATAATCATTGCAAAGACT
Found at i:26815844 original size:20 final size:20
Alignment explanation
Indices: 26815819--26815858 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26815809 TTACTTCTTC
26815819 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
26815839 TTTACTTACTTGCTTACTTG
1 TTTACTTACTTGCTTACTTG
26815859 AATAACTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.15, C:0.23, G:0.07, T:0.55
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:26816450 original size:30 final size:30
Alignment explanation
Indices: 26816414--26816474 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
26816404 TTAAATAAAT
26816414 TCATGAAATAAGTACATAATTTCTGGAAAA
1 TCATGAAATAAGTACATAATTTCTGGAAAA
26816444 TCATGAAATAAGTACATAATTTCTGGAAAA
1 TCATGAAATAAGTACATAATTTCTGGAAAA
26816474 T
1 T
26816475 TAACAACATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (30 bp):
TCATGAAATAAGTACATAATTTCTGGAAAA
Found at i:26816493 original size:30 final size:30
Alignment explanation
Indices: 26816419--26816494 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
26816409 TAAATTCATG
* **
26816419 AAATAAGTACATAATTTCTGGAAAATCATG
1 AAATAAATACATAATTTCTGGAAAATCAAC
* *
26816449 AAATAAGTACATAATTTCTGGAAAATTAAC
1 AAATAAATACATAATTTCTGGAAAATCAAC
26816479 AACATAAATA-ATAATT
1 AA-ATAAATACATAATT
26816495 ATTCAAATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 35 0.85
31 6 0.15
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.30
Consensus pattern (30 bp):
AAATAAATACATAATTTCTGGAAAATCAAC
Found at i:26818945 original size:13 final size:13
Alignment explanation
Indices: 26818889--26818946 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
26818879 GAGTACGCAT
*
26818889 AAAACATATCTTT
1 AAAACATATCTTG
* * *
26818902 AAAAAATAGCTTA
1 AAAACATATCTTG
* *
26818915 AAAACATAACATG
1 AAAACATATCTTG
*
26818928 GAAACATATCTTG
1 AAAACATATCTTG
26818941 AAAACA
1 AAAACA
26818947 GAGTATCAGA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (13 bp):
AAAACATATCTTG
Found at i:26823003 original size:15 final size:15
Alignment explanation
Indices: 26822983--26823018 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
26822973 ACTGCATAAT
26822983 AATAATTAACATGAA
1 AATAATTAACATGAA
26822998 AATAATTAACATGAA
1 AATAATTAACATGAA
26823013 AATAAT
1 AATAAT
26823019 ATAATTTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (15 bp):
AATAATTAACATGAA
Found at i:26826072 original size:11 final size:13
Alignment explanation
Indices: 26826048--26826079 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26826038 TAGTTTATTA
26826048 ATATTTTAATATG
1 ATATTTTAATATG
26826061 AT-TTTTAA-ATG
1 ATATTTTAATATG
26826072 ATATTTTA
1 ATATTTTA
26826080 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:26835643 original size:14 final size:14
Alignment explanation
Indices: 26835624--26835654 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26835614 ATAAGGTGCC
26835624 AAATACATACTATA
1 AAATACATACTATA
26835638 AAATACATACTATA
1 AAATACATACTATA
26835652 AAA
1 AAA
26835655 GTAACTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATACATACTATA
Found at i:26838461 original size:15 final size:15
Alignment explanation
Indices: 26838441--26838470 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26838431 GATTAGTTAC
26838441 CTTTCAATTTGAATT
1 CTTTCAATTTGAATT
*
26838456 CTTTCATTTTGAATT
1 CTTTCAATTTGAATT
26838471 TTGAGACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.57
Consensus pattern (15 bp):
CTTTCAATTTGAATT
Found at i:26839159 original size:21 final size:20
Alignment explanation
Indices: 26839108--26839159 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
26839098 TATACATAAG
*
26839108 AAATTTATTTTATATAAATA
1 AAATTTTTTTTATATAAATA
* *
26839128 TAATTTATTTTTATATATCATA
1 AAATTT-TTTTTATATA-AATA
26839150 AAATTTTTTT
1 AAATTTTTTT
26839160 GAAAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 5 0.19
21 13 0.50
22 8 0.31
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
AAATTTTTTTTATATAAATA
Found at i:26839407 original size:46 final size:46
Alignment explanation
Indices: 26839349--26839440 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
26839339 CATCTTTCCC
26839349 ACTAGGCATATCTATGAAAAGAAAACTTATATTTTCTATCTTTTAA
1 ACTAGGCATATCTATGAAAAGAAAACTTATATTTTCTATCTTTTAA
26839395 ACTAGGCATATCTATGAAAAGAAAACTTATATTTTCTATCTTTTAA
1 ACTAGGCATATCTATGAAAAGAAAACTTATATTTTCTATCTTTTAA
26839441 CTTTTCCCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (46 bp):
ACTAGGCATATCTATGAAAAGAAAACTTATATTTTCTATCTTTTAA
Found at i:26840198 original size:12 final size:12
Alignment explanation
Indices: 26840181--26840208 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26840171 TACTCTTAAA
26840181 TCTCCTAATATC
1 TCTCCTAATATC
26840193 TCTCCTAATATC
1 TCTCCTAATATC
26840205 TCTC
1 TCTC
26840209 TAAAATACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.36, G:0.00, T:0.43
Consensus pattern (12 bp):
TCTCCTAATATC
Found at i:26845787 original size:14 final size:15
Alignment explanation
Indices: 26845760--26845788 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26845750 TTTATTATTA
26845760 TTATTTACTTAAATT
1 TTATTTACTTAAATT
26845775 TTATTTA-TTAAATT
1 TTATTTACTTAAATT
26845789 GCAAATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATTTACTTAAATT
Found at i:26848399 original size:18 final size:18
Alignment explanation
Indices: 26848358--26848399 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
26848348 ATAAAAAAAC
26848358 GTTTTGAAATTGAATAAT
1 GTTTTGAAATTGAATAAT
*
26848376 GATTTGTAAA-TGAATAAT
1 GTTTTG-AAATTGAATAAT
*
26848394 TTTTTG
1 GTTTTG
26848400 GAAAAGAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (18 bp):
GTTTTGAAATTGAATAAT
Found at i:26849726 original size:18 final size:19
Alignment explanation
Indices: 26849688--26849726 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26849678 GTGACCCCTA
*
26849688 TTTCTCAAATTTTCATATT
1 TTTCTAAAATTTTCATATT
26849707 TTTCTAAAATTTTC-TATT
1 TTTCTAAAATTTTCATATT
26849725 TT
1 TT
26849727 GTCAAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTCTAAAATTTTCATATT
Found at i:26852031 original size:37 final size:38
Alignment explanation
Indices: 26851990--26852070 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 38
26851980 ATTTCATATG
*
26851990 TTATTATTA-ATTAGTTCCAAA-ACATATGTTTCATTCT
1 TTATTATTATATTAGTTCCAAACACATATGTGT-ATTCT
* *
26852027 TTATTA-TATATTATTTTCAAACACATATGTGTATTCT
1 TTATTATTATATTAGTTCCAAACACATATGTGTATTCT
*
26852064 ATATTAT
1 TTATTAT
26852071 GTGGTTTCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
36 2 0.05
37 26 0.70
38 9 0.24
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.51
Consensus pattern (38 bp):
TTATTATTATATTAGTTCCAAACACATATGTGTATTCT
Found at i:26852965 original size:14 final size:14
Alignment explanation
Indices: 26852910--26852958 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
26852900 TAACATTATA
26852910 AAAATATAAAAATTT
1 AAAATATAAAAA-TT
*
26852925 AAACTATACTAAAATTT
1 AAA--ATA-TAAAAATT
26852942 AAAATATAAAAATT
1 AAAATATAAAAATT
26852956 AAA
1 AAA
26852959 TTTTAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 10 0.34
15 6 0.21
17 8 0.28
18 5 0.17
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:26853032 original size:11 final size:11
Alignment explanation
Indices: 26853016--26853045 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26853006 TTTATAATGC
*
26853016 AAAGAATAAAA
1 AAAGAAAAAAA
26853027 AAAGAAAAAAA
1 AAAGAAAAAAA
26853038 AAAGAAAA
1 AAAGAAAA
26853046 GCAAATCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:26861273 original size:25 final size:25
Alignment explanation
Indices: 26861244--26861294 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26861234 ACCTGCACAT
26861244 GGAAACAAACAAATCCGTGCACTAA
1 GGAAACAAACAAATCCGTGCACTAA
26861269 GGAAACAAACAAATCCGTGCACTAA
1 GGAAACAAACAAATCCGTGCACTAA
26861294 G
1 G
26861295 TAATAGTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.12
Consensus pattern (25 bp):
GGAAACAAACAAATCCGTGCACTAA
Found at i:26871628 original size:22 final size:19
Alignment explanation
Indices: 26871589--26871630 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
26871579 TGCAAAGTTG
26871589 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
26871608 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
26871630 A
1 A
26871631 ATGATTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:26871749 original size:29 final size:30
Alignment explanation
Indices: 26871693--26871749 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
26871683 ATTTTGAAAA
* * *
26871693 TATTTACAAAAAGAGACATCTAATTTTTAG
1 TATTTACAAAAAGAGACAACCAAATTTTAG
*
26871723 TATTTACAAAAGGAG-CAACCAAATTTT
1 TATTTACAAAAAGAGACAACCAAATTTT
26871750 GAAAATAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 9 0.39
30 14 0.61
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (30 bp):
TATTTACAAAAAGAGACAACCAAATTTTAG
Found at i:26871903 original size:28 final size:28
Alignment explanation
Indices: 26871872--26871930 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
26871862 TCCATCTATT
26871872 AGGGGTAAAATAGTCATTTTACCCTTTA
1 AGGGGTAAAATAGTCATTTTACCCTTTA
*** * *
26871900 A-GGGTATTTTGGTTATTTTACCCTTTA
1 AGGGGTAAAATAGTCATTTTACCCTTTA
26871927 AGGG
1 AGGG
26871931 CATTTTGGTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
27 22 0.88
28 3 0.12
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (28 bp):
AGGGGTAAAATAGTCATTTTACCCTTTA
Found at i:26871917 original size:27 final size:27
Alignment explanation
Indices: 26871884--26871947 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
26871874 GGGTAAAATA
*
26871884 GTCATTTTACCCTTTAAGGGTATTTTG
1 GTCATTTTACCCTTTAAGGGCATTTTG
*
26871911 GTTATTTTACCCTTTAAGGGCATTTTG
1 GTCATTTTACCCTTTAAGGGCATTTTG
26871938 GTCATTTTAC
1 GTCATTTTAC
26871948 TTATTTTAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (27 bp):
GTCATTTTACCCTTTAAGGGCATTTTG
Found at i:26874954 original size:46 final size:46
Alignment explanation
Indices: 26874885--26875137 Score: 433
Period size: 46 Copynumber: 5.6 Consensus size: 46
26874875 TTTGAGTACT
*
26874885 TCTGATC-AGTGACAAAGTTATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26874930 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
26874976 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
26875022 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26875068 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
26875113 TCTGATC-AGGGGC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
26875138 ATCATACGTA
Statistics
Matches: 201, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
43 12 0.06
44 4 0.02
45 26 0.13
46 159 0.79
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:26879781 original size:145 final size:147
Alignment explanation
Indices: 26879492--26879781 Score: 363
Period size: 145 Copynumber: 2.0 Consensus size: 147
26879482 GCCAAAAATT
* * *
26879492 TTATGGTAAATTATAATATATACAATTAGCATTATATAATTAAGGTAGATTATTAATGATATGTA
1 TTATGGTAAATTATAATATATACAATTAACATGATATAATTAAAGTAGATTATTAATGATATGTA
* * * * * *
26879557 ATCCTATATATAACTATGTTATTAAAATGTACATTTTTATATTAATGATATGTGAGCTTAAACCC
66 ATCCCATATACAACTATGATATTAAAATGTACATTTTTATATTAAAGATATGTAACCTTAAACCC
* ** * *
26879622 TACCCTTGTAACTAATC
131 AAAACATATAACTAATC
* * *
26879639 TTATGGTAGA-TATAATATATACAGTTAACATGATATTATTAAAGTAGATTATTAATGATATGTA
1 TTATGGTAAATTATAATATATACAATTAACATGATATAATTAAAGTAGATTATTAATGATATGTA
* *
26879703 A-CCCATATACAATTATGATATTATAAA-GTGCATTTTTATATTAAAGATACT-TAACCTTAAAC
66 ATCCCATATACAACTATGATATTA-AAATGTACATTTTTATATTAAAGATA-TGTAACCTTAAAC
26879765 CCAAAACATATAACTAA
129 CCAAAACATATAACTAA
26879782 CTTTATAATA
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
145 59 0.48
146 54 0.44
147 9 0.07
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (147 bp):
TTATGGTAAATTATAATATATACAATTAACATGATATAATTAAAGTAGATTATTAATGATATGTA
ATCCCATATACAACTATGATATTAAAATGTACATTTTTATATTAAAGATATGTAACCTTAAACCC
AAAACATATAACTAATC
Found at i:26881176 original size:76 final size:78
Alignment explanation
Indices: 26880903--26881174 Score: 349
Period size: 77 Copynumber: 3.5 Consensus size: 78
26880893 GGAAATTAAA
* * *
26880903 AGTAAAAT-AAAATCGTTTTG-GCATTGATTCCCGCAGTTCAACGATTTTATTCCAAATTTGTTT
1 AGTAAAATAAAAATCATTTCGAG-ATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
*
26880966 TATTTCCAAAAATG
65 TATTTCCAAAAACG
* * *
26880980 AGTAAAATAAAAATCATTTTGGGATTGATTCCCGCTGTTCAACGATTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATCATTTCGAGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
26881045 -TTTCCAAAAACG
66 ATTTCCAAAAACG
* ** *
26881057 AGTAAAATAAAAATCATTTCGAGAGTGATTCTTGCCGTTCAATGATTTTATTCC-AATTT-TTTT
1 AGTAAAATAAAAATCATTTCGAGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
26881120 ATTTCCAAAAACG
66 ATTTCCAAAAACG
* * **
26881133 AGTAACAT-AAAATCCGTTTCGAGATTGATTCCTACCGTTCAA
1 AGTAAAATAAAAAT-CATTTCGAGATTGATTCCCGCCGTTCAA
26881175 TGGATTTATT
Statistics
Matches: 176, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
75 9 0.05
76 48 0.27
77 66 0.38
78 52 0.30
79 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (78 bp):
AGTAAAATAAAAATCATTTCGAGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
ATTTCCAAAAACG
Found at i:26881223 original size:153 final size:155
Alignment explanation
Indices: 26880938--26881222 Score: 330
Period size: 153 Copynumber: 1.8 Consensus size: 155
26880928 GATTCCCGCA
* * *
26880938 GTTCAACGATTTTATTCCAAATTTGTTTTATTTCCAAAAATGAGTAAAATAAAAATCATTTTGGG
1 GTTCAACGATTTTATTCCAAATTTGTTTTATTTCCAAAAACGAGTAAAATAAAAATCATTTCGAG
* * * ** * *
26881003 ATTGATTCCCGCTGTTCAACGATTTTATTCCAAATTTGTTTTTTTCCAAAAACGAGTAAAATAAA
66 ATTGATTCCCACCGTTCAACGATTTTATTACAAATTTGTTTTGCTCCAAAAACAAATAAAATAAA
26881068 AATCATTTCGAGAGTGATTCTTGCC
131 AATCATTTCGAGAGTGATTCTTGCC
* * *
26881093 GTTCAATGATTTTATTCC-AATTT-TTTTATTTCCAAAAACGAGTAACAT-AAAATCCGTTTCGA
1 GTTCAACGATTTTATTCCAAATTTGTTTTATTTCCAAAAACGAGTAAAATAAAAAT-CATTTCGA
* * * *
26881155 GATTGATTCCTACCGTTCAATGGA-TTTATTAC-ATTTTGATTTTGCTGCAAAAA-AAATAAGAA
65 GATTGATTCCCACCGTTCAA-CGATTTTATTACAAATTTG-TTTTGCTCCAAAAACAAAT-A-AA
26881217 ATAAAA
126 ATAAAA
26881223 TTAAATAAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
152 12 0.11
153 64 0.59
154 15 0.14
155 17 0.16
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (155 bp):
GTTCAACGATTTTATTCCAAATTTGTTTTATTTCCAAAAACGAGTAAAATAAAAATCATTTCGAG
ATTGATTCCCACCGTTCAACGATTTTATTACAAATTTGTTTTGCTCCAAAAACAAATAAAATAAA
AATCATTTCGAGAGTGATTCTTGCC
Found at i:26886901 original size:16 final size:15
Alignment explanation
Indices: 26886871--26886900 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26886861 GTTAATCCCA
26886871 AAAATTATTTGTTTT
1 AAAATTATTTGTTTT
*
26886886 AAAATTATTTATTTT
1 AAAATTATTTGTTTT
26886901 TGTTATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (15 bp):
AAAATTATTTGTTTT
Found at i:26888784 original size:22 final size:24
Alignment explanation
Indices: 26888759--26888811 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
26888749 ATTTTTTTAA
*
26888759 ATAAAATACA-CAT-AATTTTTTC
1 ATAAAATAAACCATAAATTTTTTC
26888781 AT-AAATAAACCATAGAATTTTTTC
1 ATAAAATAAACCATA-AATTTTTTC
26888805 A-AAAATA
1 ATAAAATA
26888812 TGTTCTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 6 0.23
22 5 0.19
24 15 0.58
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAAAATAAACCATAAATTTTTTC
Found at i:26894590 original size:29 final size:30
Alignment explanation
Indices: 26894552--26894621 Score: 115
Period size: 29 Copynumber: 2.3 Consensus size: 30
26894542 CAGAATACCT
*
26894552 ATATATGCGTGGGTTTTGTTATATATAT-A
1 ATATATGCGTGGATTTTGTTATATATATAA
26894581 ATATATGCGTGGATTTTGTTATATATATAAA
1 ATATATGCGTGGATTTTGTTATATATAT-AA
26894612 ATATATGCGT
1 ATATATGCGT
26894622 TTATGGTTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 27 0.71
31 11 0.29
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.46
Consensus pattern (30 bp):
ATATATGCGTGGATTTTGTTATATATATAA
Found at i:26894606 original size:31 final size:29
Alignment explanation
Indices: 26894552--26894621 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 29
26894542 CAGAATACCT
* *
26894552 ATATATGCGTGGGTTTTGTTATATATATA
1 ATATATGCGTGGATTTTGTTATATATAAA
26894581 ATATATGCGTGGATTTTGTTATATATATAAA
1 ATATATGCGTGGATTTTG-T-TATATATAAA
26894612 ATATATGCGT
1 ATATATGCGT
26894622 TTATGGTTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 17 0.46
30 1 0.03
31 19 0.51
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.46
Consensus pattern (29 bp):
ATATATGCGTGGATTTTGTTATATATAAA
Found at i:26894640 original size:34 final size:32
Alignment explanation
Indices: 26894552--26894651 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 32
26894542 CAGAATACCT
*
26894552 ATATATGCGTGG--GTTTTGTTATATATAT-A
1 ATATATGCGTGGATGGTTTGTTATATATATAA
26894581 ATATATGCGTGGAT--TTTGTTATATATATAAA
1 ATATATGCGTGGATGGTTTGTTATATATAT-AA
** *
26894612 ATATATGCGTTTATGGTTCTGTTATATATACACA
1 ATATATGCGTGGATGGTT-TGTTATATATATA-A
26894646 ATATAT
1 ATATAT
26894652 ATGTGTGTAG
Statistics
Matches: 60, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
29 26 0.43
31 13 0.22
33 3 0.05
34 18 0.30
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.46
Consensus pattern (32 bp):
ATATATGCGTGGATGGTTTGTTATATATATAA
Found at i:26895158 original size:17 final size:18
Alignment explanation
Indices: 26895123--26895160 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26895113 TGCGAGCTAA
* *
26895123 TTATATTTGTGTACTATG
1 TTATATTTGTGAACAATG
26895141 TTATA-TTGTGAACAATG
1 TTATATTTGTGAACAATG
26895158 TTA
1 TTA
26895161 ACTTGGCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.50
Consensus pattern (18 bp):
TTATATTTGTGAACAATG
Found at i:26901336 original size:44 final size:42
Alignment explanation
Indices: 26901269--26901390 Score: 156
Period size: 44 Copynumber: 2.9 Consensus size: 42
26901259 TTCTGATATG
* * *
26901269 TGATTTTGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATT
1 TGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
26901310 TGAGATTTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 T--GATTT-TGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
* * *
26901355 TGATTTCGTGTAAGACCATGTCTGGGATAGTGGCAT
1 TGATTTTGTGTAAGACCATGTCTGGGACATTGGCAT
26901391 TGATATTTGA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.38
43 10 0.14
44 30 0.42
45 3 0.04
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
Found at i:26901421 original size:43 final size:42
Alignment explanation
Indices: 26901277--26901423 Score: 129
Period size: 42 Copynumber: 3.4 Consensus size: 42
26901267 TGTGATTTTG
* * **
26901277 TGTAAGACCACGTCTGGGAC-GTTGGCATCG-ATTTGAGATTTATG
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGTATAT--GA-TTACA
* * *
26901321 TGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGTATATGATTACA
* * *
26901363 TGTAAGACCATGTCTGGGATAGTGGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCG-TATATGATTACA
26901406 TGTAAGACC-TCGTCTGGG
1 TGTAAGACCAT-GTCTGGG
26901424 GCGTTGGCAT
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
42 31 0.35
43 27 0.31
44 27 0.31
45 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGTATATGATTACA
Found at i:26901435 original size:43 final size:43
Alignment explanation
Indices: 26901276--26901433 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
26901266 ATGTGATTTT
* * *
26901276 GTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGA-TTAC
* * *
26901320 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTAC
* *
26901362 GTGTAAGACCATGTCTGGGATAG-TGGCATTGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGA-CGTTGGCATCGATATTTGATTAC
* *
26901405 ATGTAAGACC-TCGTCTGGGGCGTTGGCAT
1 GTGTAAGACCAT-GTCTGGGACGTTGGCAT
26901434 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 31 0.33
43 34 0.36
44 30 0.32
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:26914516 original size:257 final size:257
Alignment explanation
Indices: 26914060--26914578 Score: 1038
Period size: 257 Copynumber: 2.0 Consensus size: 257
26914050 AATGGATAGC
26914060 AAACTAAGAGGTATAATGTGCCCCATTATTCTTCAGTATTATCAGTGTTTAATATGGTGGCTAGT
1 AAACTAAGAGGTATAATGTGCCCCATTATTCTTCAGTATTATCAGTGTTTAATATGGTGGCTAGT
26914125 GATTTGTTTAGGTGATTTTTAATCTAATTAGTTCCCCTTCTCTTTCCTTATAAGTTTTAAATTAT
66 GATTTGTTTAGGTGATTTTTAATCTAATTAGTTCCCCTTCTCTTTCCTTATAAGTTTTAAATTAT
26914190 GTTGTCAGTGCATTGACCAGTCATCGTTTGTCATTAATCAAACTTCTTGTTAGATTAGTCAATTC
131 GTTGTCAGTGCATTGACCAGTCATCGTTTGTCATTAATCAAACTTCTTGTTAGATTAGTCAATTC
26914255 CATTTTGTTTTACACAAGTTTTCAAGGATAGGGCACAACTATGCTATCTCTATTGGCCTGAT
196 CATTTTGTTTTACACAAGTTTTCAAGGATAGGGCACAACTATGCTATCTCTATTGGCCTGAT
26914317 AAACTAAGAGGTATAATGTGCCCCATTATTCTTCAGTATTATCAGTGTTTAATATGGTGGCTAGT
1 AAACTAAGAGGTATAATGTGCCCCATTATTCTTCAGTATTATCAGTGTTTAATATGGTGGCTAGT
26914382 GATTTGTTTAGGTGATTTTTAATCTAATTAGTTCCCCTTCTCTTTCCTTATAAGTTTTAAATTAT
66 GATTTGTTTAGGTGATTTTTAATCTAATTAGTTCCCCTTCTCTTTCCTTATAAGTTTTAAATTAT
26914447 GTTGTCAGTGCATTGACCAGTCATCGTTTGTCATTAATCAAACTTCTTGTTAGATTAGTCAATTC
131 GTTGTCAGTGCATTGACCAGTCATCGTTTGTCATTAATCAAACTTCTTGTTAGATTAGTCAATTC
26914512 CATTTTGTTTTACACAAGTTTTCAAGGATAGGGCACAACTATGCTATCTCTATTGGCCTGAT
196 CATTTTGTTTTACACAAGTTTTCAAGGATAGGGCACAACTATGCTATCTCTATTGGCCTGAT
26914574 AAACT
1 AAACT
26914579 TATGAGTAGA
Statistics
Matches: 262, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
257 262 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (257 bp):
AAACTAAGAGGTATAATGTGCCCCATTATTCTTCAGTATTATCAGTGTTTAATATGGTGGCTAGT
GATTTGTTTAGGTGATTTTTAATCTAATTAGTTCCCCTTCTCTTTCCTTATAAGTTTTAAATTAT
GTTGTCAGTGCATTGACCAGTCATCGTTTGTCATTAATCAAACTTCTTGTTAGATTAGTCAATTC
CATTTTGTTTTACACAAGTTTTCAAGGATAGGGCACAACTATGCTATCTCTATTGGCCTGAT
Found at i:26923597 original size:3 final size:3
Alignment explanation
Indices: 26923589--26923626 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
26923579 TTTTTAAATT
* *
26923589 TTA TTA TTA TTA TTA TTG TTA TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26923627 CCTATATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26924071 original size:39 final size:38
Alignment explanation
Indices: 26923986--26924071 Score: 88
Period size: 39 Copynumber: 2.2 Consensus size: 38
26923976 ACAATTCAAA
*
26923986 ATACACATTTTTTATATTATATATATTTTTGAATTATC
1 ATACACATTTTTTATATTATATATATTGTTGAATTATC
* *
26924024 ATAAACATTTTATTAT-TCTATATATACTCTGTT-ATTTAT-
1 ATACACATTTT-TTATAT-TATATATA-T-TGTTGAATTATC
26924063 ATACACATT
1 ATACACATT
26924072 GTACATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
38 11 0.28
39 20 0.50
40 6 0.15
41 3 0.08
ACGTcount: A:0.35, C:0.10, G:0.02, T:0.52
Consensus pattern (38 bp):
ATACACATTTTTTATATTATATATATTGTTGAATTATC
Found at i:26932770 original size:24 final size:23
Alignment explanation
Indices: 26932743--26932787 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
26932733 AAAAATAGAG
*
26932743 AAAAAAATGAAATAAATGACAACT
1 AAAAAAATAAAAT-AATGACAACT
*
26932767 AAAAATATAAAATAATGACAA
1 AAAAAAATAAAATAATGACAA
26932788 AGAAAAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (23 bp):
AAAAAAATAAAATAATGACAACT
Found at i:26932793 original size:23 final size:24
Alignment explanation
Indices: 26932741--26932793 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
26932731 ATAAAAATAG
*
26932741 AGAAAAAAATGAAATAAATGACAA
1 AGAAAAAAATAAAATAAATGACAA
** *
26932765 CTAAAAATATAAAAT-AATGACAA
1 AGAAAAAAATAAAATAAATGACAA
26932788 AGAAAA
1 AGAAAA
26932794 GTTAAGAGAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.70, C:0.06, G:0.09, T:0.15
Consensus pattern (24 bp):
AGAAAAAAATAAAATAAATGACAA
Found at i:26933778 original size:139 final size:139
Alignment explanation
Indices: 26933528--26933806 Score: 549
Period size: 139 Copynumber: 2.0 Consensus size: 139
26933518 TTTAGATTTT
*
26933528 TGGAATGTGATTGTTTGCAAAAAGTTTGATTTGGTATTGTGGTTGTGTGCCTTTGGAGTATGCTT
1 TGGAATGTGACTGTTTGCAAAAAGTTTGATTTGGTATTGTGGTTGTGTGCCTTTGGAGTATGCTT
26933593 TAGGACCCAAGTTCAATTCCTAAGTTTTGGATTTTCTCCTATTAATTTTTGGTCTTAAGTTGGAG
66 TAGGACCCAAGTTCAATTCCTAAGTTTTGGATTTTCTCCTATTAATTTTTGGTCTTAAGTTGGAG
26933658 TTTTATGGC
131 TTTTATGGC
26933667 TGGAATGTGACTGTTTGCAAAAAGTTTGATTTGGTATTGTGGTTGTGTGCCTTTGGAGTATGCTT
1 TGGAATGTGACTGTTTGCAAAAAGTTTGATTTGGTATTGTGGTTGTGTGCCTTTGGAGTATGCTT
26933732 TAGGACCCAAGTTCAATTCCTAAGTTTTGGATTTTCTCCTATTAATTTTTGGTCTTAAGTTGGAG
66 TAGGACCCAAGTTCAATTCCTAAGTTTTGGATTTTCTCCTATTAATTTTTGGTCTTAAGTTGGAG
26933797 TTTTATGGC
131 TTTTATGGC
26933806 T
1 T
26933807 TAAATTAATT
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 139 1.00
ACGTcount: A:0.20, C:0.11, G:0.24, T:0.44
Consensus pattern (139 bp):
TGGAATGTGACTGTTTGCAAAAAGTTTGATTTGGTATTGTGGTTGTGTGCCTTTGGAGTATGCTT
TAGGACCCAAGTTCAATTCCTAAGTTTTGGATTTTCTCCTATTAATTTTTGGTCTTAAGTTGGAG
TTTTATGGC
Found at i:26939476 original size:23 final size:24
Alignment explanation
Indices: 26939450--26939502 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
26939440 TGATCCTCAC
*
26939450 TTAACTAGGTT-TCTTTTCCTAGT
1 TTAACTAGGTTATCTTTTCCCAGT
**
26939473 TTAACTCTGTTATCTTTTCCCAGT
1 TTAACTAGGTTATCTTTTCCCAGT
*
26939497 CTAACT
1 TTAACT
26939503 TTGATTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.19, C:0.23, G:0.09, T:0.49
Consensus pattern (24 bp):
TTAACTAGGTTATCTTTTCCCAGT
Found at i:26944000 original size:47 final size:47
Alignment explanation
Indices: 26943944--26944037 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
26943934 GCAAATTGAT
*
26943944 TTTAAATTAGGTTCGATTGCTTCCAATTACCTATTTTATTTAATAGA
1 TTTAAATTAGGTTAGATTGCTTCCAATTACCTATTTTATTTAATAGA
*
26943991 TTTAAATTAGGTTAGATTGCTTCCAATTACCTGTTTTATTTAATAGA
1 TTTAAATTAGGTTAGATTGCTTCCAATTACCTATTTTATTTAATAGA
26944038 GTTAGCTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.47
Consensus pattern (47 bp):
TTTAAATTAGGTTAGATTGCTTCCAATTACCTATTTTATTTAATAGA
Found at i:26944048 original size:37 final size:37
Alignment explanation
Indices: 26944001--26944078 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
26943991 TTTAAATTAG
26944001 GTTAGATTGCTTCCAATTACCTGTTTTATTTAATAGA
1 GTTAGATTGCTTCCAATTACCTGTTTTATTTAATAGA
*
26944038 GTTAGCTTGCTTCCAATTACCTGTTTTATTTAATAGA
1 GTTAGATTGCTTCCAATTACCTGTTTTATTTAATAGA
26944075 GTTA
1 GTTA
26944079 AGTTCAGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (37 bp):
GTTAGATTGCTTCCAATTACCTGTTTTATTTAATAGA
Found at i:26945753 original size:16 final size:18
Alignment explanation
Indices: 26945734--26945773 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
26945724 ATATTTTTAG
26945734 TTATATAT-ATTT-AAAA
1 TTATATATAATTTCAAAA
*
26945750 TTAT-TGTAATTTCAAAA
1 TTATATATAATTTCAAAA
26945767 TTATATA
1 TTATATA
26945774 ACATTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
15 2 0.11
16 8 0.42
17 8 0.42
18 1 0.05
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
TTATATATAATTTCAAAA
Found at i:26945880 original size:24 final size:24
Alignment explanation
Indices: 26945841--26945894 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
26945831 ATTCTAAAAC
*
26945841 ATAA-TTTTTAAAATAATTAT-AT
1 ATAACTTTTTAAAATAATCATGAT
*
26945863 AATAACTTTTTAAGATAATCATGAT
1 -ATAACTTTTTAAAATAATCATGAT
26945888 ATAACTT
1 ATAACTT
26945895 GTTGTTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 4 0.15
24 21 0.78
25 2 0.07
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (24 bp):
ATAACTTTTTAAAATAATCATGAT
Found at i:26948364 original size:19 final size:19
Alignment explanation
Indices: 26948340--26948376 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26948330 GTTTTTGGGG
*
26948340 TTTGGGGGGAAGTAAAAGT
1 TTTGGGGGAAAGTAAAAGT
26948359 TTTGGGGGAAAGTAAAAG
1 TTTGGGGGAAAGTAAAAG
26948377 GAAAAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.41, T:0.24
Consensus pattern (19 bp):
TTTGGGGGAAAGTAAAAGT
Found at i:26948365 original size:18 final size:19
Alignment explanation
Indices: 26948339--26948376 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
26948329 AGTTTTTGGG
26948339 GTTTGGGGGG-AAGTAAAA
1 GTTTGGGGGGAAAGTAAAA
*
26948357 GTTTTGGGGGAAAGTAAAA
1 GTTTGGGGGGAAAGTAAAA
26948376 G
1 G
26948377 GAAAAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.42, T:0.24
Consensus pattern (19 bp):
GTTTGGGGGGAAAGTAAAA
Found at i:26953669 original size:24 final size:24
Alignment explanation
Indices: 26953648--26953699 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
26953638 AATCAATGTC
*
26953648 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
26953672 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
26953696 AAAT
1 AAAT
26953700 TTTCAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:26955096 original size:24 final size:24
Alignment explanation
Indices: 26955060--26955114 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
26955050 TAAGACATGA
* *
26955060 CCGTGTGATAGCTCGTGTCCTAGG
1 CCGTGTGACAGCTCGTGTCCCAGG
26955084 CCGTGTGACAGCTCGTGTCCCAGG
1 CCGTGTGACAGCTCGTGTCCCAGG
*
26955108 CTGTGTG
1 CCGTGTG
26955115 CACCTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.11, C:0.27, G:0.35, T:0.27
Consensus pattern (24 bp):
CCGTGTGACAGCTCGTGTCCCAGG
Found at i:26957895 original size:31 final size:30
Alignment explanation
Indices: 26957858--26957936 Score: 122
Period size: 31 Copynumber: 2.6 Consensus size: 30
26957848 CCACATGACC
26957858 GTGTGGCCCACACTGCCCAAATGGCGAGACT
1 GTGTGGCCCACA-TGCCCAAATGGCGAGACT
*
26957889 GTGTGGCCCACATTGCCCAAATGGCGAGATT
1 GTGTGGCCCACA-TGCCCAAATGGCGAGACT
*
26957920 GTATGGCCCACATGCCC
1 GTGTGGCCCACATGCCC
26957937 TACCTGATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 5 0.11
31 40 0.89
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (30 bp):
GTGTGGCCCACATGCCCAAATGGCGAGACT
Found at i:26960499 original size:34 final size:33
Alignment explanation
Indices: 26960456--26960568 Score: 122
Period size: 34 Copynumber: 3.3 Consensus size: 33
26960446 AATGCTATAT
*
26960456 GACATGCTTATAATAGATCAATACAGTAGCAAA
1 GACATGCTTATAATAAATCAATACAGTAGCAAA
* * *
26960489 GGACATGCTTATAACATATTAATACTA-TAGCAATA
1 -GACATGCTTATAATAAATCAATAC-AGTAGCAA-A
*
26960524 GACATGCTTAT-ATCAAATCAATACGGTAGCAAAA
1 GACATGCTTATAAT-AAATCAATACAGTAGC-AAA
26960558 GACATGCTTAT
1 GACATGCTTAT
26960569 CATGTATTCG
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
33 1 0.01
34 62 0.93
35 4 0.06
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.27
Consensus pattern (33 bp):
GACATGCTTATAATAAATCAATACAGTAGCAAA
Found at i:26964448 original size:30 final size:30
Alignment explanation
Indices: 26964412--26964471 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
26964402 CCTGAAAAAT
26964412 GATGATTGAGACGAGATTCGACATTTTTGA
1 GATGATTGAGACGAGATTCGACATTTTTGA
26964442 GATGATTGAGACGAGATTCGACATTTTTGA
1 GATGATTGAGACGAGATTCGACATTTTTGA
26964472 ACCACGAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (30 bp):
GATGATTGAGACGAGATTCGACATTTTTGA
Found at i:26967586 original size:18 final size:18
Alignment explanation
Indices: 26967563--26967621 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
26967553 ATAATAGAAG
26967563 GAAATAACAA-ACTAAAGA
1 GAAATAACAATAC-AAAGA
*
26967581 GAAATATCAATACAAAGA
1 GAAATAACAATACAAAGA
* *
26967599 GGTAAT-ACAATAGAAAGA
1 -GAAATAACAATACAAAGA
*
26967617 TAAAT
1 GAAAT
26967622 GAGTGAACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.09
18 24 0.73
19 6 0.18
ACGTcount: A:0.61, C:0.08, G:0.14, T:0.17
Consensus pattern (18 bp):
GAAATAACAATACAAAGA
Found at i:26969271 original size:32 final size:33
Alignment explanation
Indices: 26969235--26969305 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 33
26969225 ACTATTTTAG
26969235 TTAAAAATGTTTACATGGATGTTTTTTTTCTT-
1 TTAAAAATGTTTACATGGATGTTTTTTTTCTTC
26969267 TTAAAAATGTTTACATGGATGTTTTTTTTCTTC
1 TTAAAAATGTTTACATGGATGTTTTTTTTCTTC
26969300 TTAAAA
1 TTAAAA
26969306 CCACAAATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 32 0.84
33 6 0.16
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (33 bp):
TTAAAAATGTTTACATGGATGTTTTTTTTCTTC
Found at i:26970146 original size:9 final size:9
Alignment explanation
Indices: 26970132--26970160 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
26970122 GATTTTATGG
26970132 TTTAGGGTT
1 TTTAGGGTT
26970141 TTTAGGGTT
1 TTTAGGGTT
26970150 TTTAGGGTT
1 TTTAGGGTT
26970159 TT
1 TT
26970161 GGAGAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.31, T:0.59
Consensus pattern (9 bp):
TTTAGGGTT
Found at i:26970408 original size:125 final size:125
Alignment explanation
Indices: 26970215--26970715 Score: 801
Period size: 125 Copynumber: 4.0 Consensus size: 125
26970205 TTTACTATAA
* * * * * *
26970215 TAGGTCCT-GAAAAAATAATTTTGAGTTTACGTTTCTGAGCAAATAGTATAAAATTGCATCTAGC
1 TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* *
26970279 AGGATGCTGTTTGATAAGAATTTGTGAAATC-TCGCCCTCGTGGACGCGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGT-GCCCTCGTGGACGCGCTTTTGCTACAG
*
26970339 TAGGTCCTGGAAGAAATAACTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* * *
26970404 AGGATACTATTTGAGAAGAATTTGTGAAATCGTGCCTTCGTGGACACGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAG
*
26970464 TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* * * *
26970529 AGGATGCTATTTAAGAAGAATTTATGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAG
*
26970589 TAGGTCCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGG
1 TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
*
26970653 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTACCCTCGTGGACGCGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAG
26970713 TAG
1 TAG
26970716 CTTGTTTGGG
Statistics
Matches: 347, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
124 116 0.33
125 230 0.66
126 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (125 bp):
TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:26970681 original size:249 final size:249
Alignment explanation
Indices: 26970215--26970715 Score: 815
Period size: 249 Copynumber: 2.0 Consensus size: 249
26970205 TTTACTATAA
* * * * *
26970215 TAGGTCCTGAAAAAATAATTTTGAGTTTACGTTTCTGAGCAAATAGTATAAAATTGCATCTAGCA
1 TAGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTAAGCAAATAGTATAAAATCGCATCTAGCA
* * * * * *
26970280 GGATGCTGTTTGATAAGAATTTGTGAAATCTCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTC
66 GGATGCTATTTAAGAAGAATTTATGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGTC
26970345 CTGGAAGAAATAACTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATA
131 CTGGAAGAAATAACTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATA
* *
26970410 CTATTTGAGAAGAATTTGTGAAATCGTGCCTTCGTGGACACGCTTTTGCTACAG
196 CTATTTGAGAAGAATTTGTGAAATCGTACCCTCGTGGACACGCTTTTGCTACAG
* *
26970464 TAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCCT-GAAAAAATAATTTCGACTTGACGTTTCTAAGCAAATAGTATAAAATCGCATCTAGC
26970529 AGGATGCTATTTAAGAAGAATTTATGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGT
65 AGGATGCTATTTAAGAAGAATTTATGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGT
* *
26970594 CCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGGAGGAT
130 CCTGGAAGAAATAACTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGAT
* *
26970658 GCTATTTGAGAAGAATTTGTGAAATCGTACCCTCGTGGACGCGCTTTTGCTACAG
195 ACTATTTGAGAAGAATTTGTGAAATCGTACCCTCGTGGACACGCTTTTGCTACAG
26970713 TAG
1 TAG
26970716 CTTGTTTGGG
Statistics
Matches: 232, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
249 117 0.50
250 115 0.50
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (249 bp):
TAGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTAAGCAAATAGTATAAAATCGCATCTAGCA
GGATGCTATTTAAGAAGAATTTATGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGTC
CTGGAAGAAATAACTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATA
CTATTTGAGAAGAATTTGTGAAATCGTACCCTCGTGGACACGCTTTTGCTACAG
Found at i:26973918 original size:114 final size:114
Alignment explanation
Indices: 26973717--26973987 Score: 524
Period size: 114 Copynumber: 2.4 Consensus size: 114
26973707 AATTTATATT
*
26973717 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATCAAATTAT
1 TGTAAAATTATTAACTGAT-AATTGTATTAATGGTTAGTAAAATTATCAAATTATATCAAATTAT
26973782 TAATTGTTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAA
65 TAATTGTTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAA
26973832 TGTAAAATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTATCAAATTATATCAAATTATT
1 TGTAAAATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTATCAAATTATATCAAATTATT
26973897 AATTGTTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAA
66 AATTGTTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAA
26973946 TGTAAAATTATTAACTGATAATTGTATTAATGGTTAGTAAAA
1 TGTAAAATTATTAACTGATAATTGTATTAATGGTTAGTAAAA
26973988 ACCTTAAGGT
Statistics
Matches: 155, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
114 137 0.88
115 18 0.12
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (114 bp):
TGTAAAATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTATCAAATTATATCAAATTATT
AATTGTTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAA
Found at i:26974179 original size:49 final size:48
Alignment explanation
Indices: 26974094--26974186 Score: 141
Period size: 49 Copynumber: 1.9 Consensus size: 48
26974084 TTTTAAGTTA
* * *
26974094 AGGGTTAGGGTTTTTAATTTAAGGTTTAGGGTTTTTAATTTAATGGTT
1 AGGGTTAGGATTTTTAATTAAAGGTTTAGGGTTTTTAAGTTAATGGTT
*
26974142 AGGGTTAGGATTTTTAAGTTAAAGGTTTATGGTTTTTAAGTTAAT
1 AGGGTTAGGATTTTTAA-TTAAAGGTTTAGGGTTTTTAAGTTAAT
26974187 ATTTTAGGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 16 0.40
49 24 0.60
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (48 bp):
AGGGTTAGGATTTTTAATTAAAGGTTTAGGGTTTTTAAGTTAATGGTT
Found at i:26974345 original size:27 final size:26
Alignment explanation
Indices: 26974284--26974370 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 26
26974274 TTAGGGTTTT
26974284 TAGTTAAGGGTTAGGGTTTTTAATT--
1 TAGTT-AGGGTTAGGGTTTTTAATTAA
*
26974309 TA---AGGCTTAGGGTTTTTAATTTAA
1 TAGTTAGGGTTAGGGTTTTTAA-TTAA
26974333 TAGTTAGGGTTAGGGTTTTTAAGTTAA
1 TAGTTAGGGTTAGGGTTTTTAA-TTAA
*
26974360 AAGTTTAGGGT
1 TAG-TTAGGGT
26974371 ATAATTGTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
21 16 0.31
22 2 0.04
24 2 0.04
25 2 0.04
27 22 0.43
28 7 0.14
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (26 bp):
TAGTTAGGGTTAGGGTTTTTAATTAA
Found at i:26975868 original size:21 final size:21
Alignment explanation
Indices: 26973995--26975847 Score: 1746
Period size: 21 Copynumber: 86.2 Consensus size: 21
26973985 AAAACCTTAA
26973995 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
*
26974017 GGTTTTTAAGTTAAGGTTTTAG
1 GGTTTTTAAGTTAAGG-GTTAG
*
26974039 GGTTATTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974060 GGTTATTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
26974081 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26974102 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974123 GGTTTTTAATTTAATGGTTAGGGTTAG
1 GGTTTTTAAGTT-A-----AGGGTTAG
* * *
26974150 GATTTTTAAGTTAAAGGTTTAT
1 GGTTTTTAAGTT-AAGGGTTAG
***
26974172 GGTTTTTAAGTTAATATTTTAG
1 GGTTTTTAAGTTAA-GGGTTAG
* * *
26974194 GGTTATTAATTTAA-GGTGAG
1 GGTTTTTAAGTTAAGGGTTAG
* **
26974214 GGTTTTTAATTTGCGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
*
26974236 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26974257 GGTGTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
26974278 GGTTTTT-AGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26974298 GGTTTTTAATTTAAGGCTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974319 GGTTTTTAATTTAATAGTTAGGGTTAG
1 GGTTTTTAA-GT--TA---AGGGTTAG
* *
26974346 GGTTTTTAAGTTAAAAGTTTAG
1 GGTTTTTAAGTT-AAGGGTTAG
*
26974368 GGTATAATTGT-A-TTAAGGGTTTAT
1 GGT-T--TT-TAAGTTAAGGG-TTAG
* *
26974392 GGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAG
*
26974413 AGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974433 TGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
*
26974455 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26974476 GGTTATTAAGTTAAGGGTTAC
1 GGTTTTTAAGTTAAGGGTTAG
* * *
26974497 AGTTTTTAAGTTAAGTGTTAA
1 GGTTTTTAAGTTAAGGGTTAG
*
26974518 GGTTTTTGAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974539 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26974560 GGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAG
**
26974581 AATTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974602 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974623 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
26974644 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974664 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974685 GGTTTTTAAGTTAAGGGTTTAA
1 GGTTTTTAAGTTAAGGG-TTAG
**
26974707 GGTTTTTAAGTTAAGATTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974728 GG-TTTTAAGTTAAGGGTTAA
1 GGTTTTTAAGTTAAGGGTTAG
**
26974748 CATTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
** *
26974770 GGTTTTTATTTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974791 GGTTTTTAATTTAATGGTTAGGGTTAG
1 GGTTTTTAAGTT-A-----AGGGTTAG
** *
26974818 GGTTTTTAAGTTGAAGTTTTAT
1 GGTTTTTAAGTT-AAGGGTTAG
*
26974840 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAAGGG-TTAG
* *
26974862 GGTTATTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974883 GGTTATTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974904 GGTTTTTGAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26974925 GG-TTTTAAGTTAAGGGTTTTG
1 GGTTTTTAAGTTAAGGG-TTAG
* *
26974946 AGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* * * *
26974967 GGTTATTAGGTTAAGGTTTAA
1 GGTTTTTAAGTTAAGGGTTAG
26974988 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
26975009 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* * *
26975030 GGTTTCTAA-TTTAGGGTTTAT
1 GGTTTTTAAGTTAAGGG-TTAG
* *
26975051 GGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAG
*
26975072 GGTTTTTAA-TT-AGGGTTTAA
1 GGTTTTTAAGTTAAGGG-TTAG
* **
26975092 TGTTTTTAAGTTTGGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* * *
26975113 GG-GTGTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* * * *
26975133 GGTTATTAAGGTAAGGTTTAT
1 GGTTTTTAAGTTAAGGGTTAG
* * *
26975154 GG-TATTAAGTTAAGGTTTAA
1 GGTTTTTAAGTTAAGGGTTAG
* * *
26975174 GGTTTTTAATTTAAGAGTTTG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26975195 GGATTTTAA-TTATGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26975215 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAAGGG-TTAG
* *
26975237 AGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26975258 GGTTATTAAGTTAAGGTTTA-
1 GGTTTTTAAGTTAAGGGTTAG
26975278 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26975299 GGGTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
* * * *
26975321 GATTTTTAATTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26975342 GGTTTTTAATTTAATGGTTAGGGTTAG
1 GGTTTTTAAGTT-A-----AGGGTTAG
* *
26975369 GGTTTTTAAGTTAAAGGTTTAT
1 GGTTTTTAAGTT-AAGGGTTAG
* *
26975391 GGTTTTTAAGTTAAAGGTTTAT
1 GGTTTTTAAGTT-AAGGGTTAG
*
26975413 GGTTATTAAGTTTAA-GGTTAG
1 GGTTTTTAAG-TTAAGGGTTAG
*
26975434 GGTTTTTGAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26975455 GATTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
* *
26975477 GGTTATTAAGTTAA-GGTCTAT
1 GGTTTTTAAGTTAAGGGT-TAG
* *
26975498 GGTTTTTAATTTAAAGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
26975519 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
26975540 GATTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
26975561 GGTTTTTAA-TTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26975581 GGTTTTTAAGTTAAGGGTTTAA
1 GGTTTTTAAGTTAAGGG-TTAG
*
26975603 GGTTTTTAAGTTAAGGCTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* ** *
26975624 GGTTATTAAGTTAAGATTTAA
1 GGTTTTTAAGTTAAGGGTTAG
*
26975645 GGTTTTGAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
** * *
26975666 CATTTTTAAGTTATGAGTTTAG
1 GGTTTTTAAGTTAAG-GGTTAG
* *
26975688 GGTTTTTAATTTAAGGTTTAAG
1 GGTTTTTAAGTTAAGGGTT-AG
*
26975710 GTTTTTATTTTAATGGTT-AGGGTTAG
1 G---GT-TTTTAA--GTTAAGGGTTAG
* * *
26975736 GGTTTTTAACTTGAAGGTTTAT
1 GGTTTTTAAGTT-AAGGGTTAG
*
26975758 GGTTTTTATGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
*
26975780 GGTTATTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
26975801 GGTTTTTAAGTTAAGGGTTTTG
1 GGTTTTTAAGTTAAGGG-TTAG
* *
26975823 GGTTTTTAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAG
26975844 GGTT
1 GGTT
26975848 AGGGTTTTTT
Statistics
Matches: 1527, Mismatches: 228, Indels: 153
0.80 0.12 0.08
Matches are distributed among these distances:
19 4 0.00
20 213 0.14
21 791 0.52
22 404 0.26
23 8 0.01
24 11 0.01
25 5 0.00
26 11 0.01
27 78 0.05
28 2 0.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (21 bp):
GGTTTTTAAGTTAAGGGTTAG
Found at i:26975919 original size:15 final size:15
Alignment explanation
Indices: 26975894--26975928 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
26975884 AAATTATATA
26975894 TTTAA-TTATAAATT
1 TTTAATTTATAAATT
26975908 TTTAATTTATAAATT
1 TTTAATTTATAAATT
26975923 TTTAAT
1 TTTAAT
26975929 AAGTTAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTAATTTATAAATT
Found at i:26976385 original size:255 final size:256
Alignment explanation
Indices: 26975930--26976444 Score: 861
Period size: 255 Copynumber: 2.0 Consensus size: 256
26975920 ATTTTTAATA
* *
26975930 AGTTAAGGGTTTAGGGTTTTTAATTAATAACTCAAAAAAATTTCTATTTTATTACATAAAAAAAT
1 AGTTAAGGCTTTAGGGTTTTTAAATAATAACTCAAAAAAATTTCTATTTTATTACATAAAAAAAT
*
26975995 ATCAAAATATTCAAAATATTTGTAGAAATAAATTTAAATACAAAAATCAATGTCTGTGCCCACGG
66 ATCAAAATATTCAAAAGATTTGTAGAAATAAATTTAAATACAAAAATCAATGTCTGTGCCCACGG
*
26976060 GATTCAGTGCCACATGGCGGCCATTGACGGTTACGCGCTGGATTCCTCCTTTGTCCAGCTTCTGG
131 GATTCAGTGCCACATGGCGGCCATCGACGGTTACGCGCTGGATTCCTCCTTTGTCCAGCTTCTGG
*
26976125 CGGCGGTTCTGGTTATTCCGGCGGGGATTCTGGTTCTTCTAGTAGGGCATCTGGTTGTCGG
196 CGGCGGTTCTGGTTATTCCGGCGGGGATTCTAGTTCTTCTAGTAGGGCATCTGGTTGTCGG
* *
26976186 AGTTAAGGCTTTAGGGTTTTTAAATAATAACTTAAAAAATTTTCTATTTTATTACAT-AAAAAAT
1 AGTTAAGGCTTTAGGGTTTTTAAATAATAACTCAAAAAAATTTCTATTTTATTACATAAAAAAAT
* **
26976250 ATCAAAATATTCAAAAGATTTGTAGAAATAAATTTAAATACAAAAATCAATGTTTGTGCCCGTGG
66 ATCAAAATATTCAAAAGATTTGTAGAAATAAATTTAAATACAAAAATCAATGTCTGTGCCCACGG
* * *
26976315 GATTCAGTGCCACATGGCGGCCGTCGACGGTTACGCGTTGGATTCCTCCTTTGTCCAGCTTCTTG
131 GATTCAGTGCCACATGGCGGCCATCGACGGTTACGCGCTGGATTCCTCCTTTGTCCAGCTTCTGG
* * * * *
26976380 CGGCGGTTGTGGTTCTTTCGGCGGGGATTCTAGTTCTTCTAGTAGGGCATTTGGTTGTTGG
196 CGGCGGTTCTGGTTATTCCGGCGGGGATTCTAGTTCTTCTAGTAGGGCATCTGGTTGTCGG
26976441 AGTT
1 AGTT
26976445 GGGACGATGA
Statistics
Matches: 241, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
255 188 0.78
256 53 0.22
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (256 bp):
AGTTAAGGCTTTAGGGTTTTTAAATAATAACTCAAAAAAATTTCTATTTTATTACATAAAAAAAT
ATCAAAATATTCAAAAGATTTGTAGAAATAAATTTAAATACAAAAATCAATGTCTGTGCCCACGG
GATTCAGTGCCACATGGCGGCCATCGACGGTTACGCGCTGGATTCCTCCTTTGTCCAGCTTCTGG
CGGCGGTTCTGGTTATTCCGGCGGGGATTCTAGTTCTTCTAGTAGGGCATCTGGTTGTCGG
Found at i:26977375 original size:7 final size:7
Alignment explanation
Indices: 26977365--26977389 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26977355 TTATATACAT
26977365 AATACTA
1 AATACTA
26977372 AATACTA
1 AATACTA
26977379 AATACTA
1 AATACTA
26977386 AATA
1 AATA
26977390 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:26977584 original size:20 final size:20
Alignment explanation
Indices: 26977559--26977596 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26977549 TTTATTTTTA
26977559 AAAATCTAA-ATAATAATTGT
1 AAAATCTAATATAA-AATTGT
26977579 AAAATCTAATATAAAATT
1 AAAATCTAATATAAAATT
26977597 TACCTCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTAATATAAAATTGT
Found at i:26978588 original size:11 final size:11
Alignment explanation
Indices: 26978574--26978650 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
26978564 TTAAATATGG
26978574 ATTTGAGAGAA
1 ATTTGAGAGAA
*
26978585 ATTTG-GAAGGA
1 ATTTGAG-AGAA
26978596 ATTTGAGAGGAA
1 ATTTGAGA-GAA
*
26978608 A-TTGGGAAGAA
1 ATTTGAG-AGAA
26978619 A-TTGAGAGGAA
1 ATTTGAGA-GAA
*
26978630 A-TTGCGAAGAA
1 ATTTGAG-AGAA
26978641 ATTTGAGAGA
1 ATTTGAGAGA
26978651 GGATTAGTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
10 2 0.04
11 41 0.77
12 10 0.19
ACGTcount: A:0.43, C:0.01, G:0.32, T:0.23
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:26978599 original size:22 final size:23
Alignment explanation
Indices: 26978574--26978649 Score: 95
Period size: 22 Copynumber: 3.4 Consensus size: 23
26978564 TTAAATATGG
26978574 ATTTGAGA-GAAATTTGGAAGGA
1 ATTTGAGAGGAAATTTGGAAGGA
*
26978596 ATTTGAGAGGAAATTGGGAA-GA
1 ATTTGAGAGGAAATTTGGAAGGA
* *
26978618 AATTGAGAGGAAA-TTGCGAAGAA
1 ATTTGAGAGGAAATTTG-GAAGGA
26978641 ATTTGAGAG
1 ATTTGAGAG
26978650 AGGATTAGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.04
22 25 0.54
23 19 0.41
ACGTcount: A:0.42, C:0.01, G:0.33, T:0.24
Consensus pattern (23 bp):
ATTTGAGAGGAAATTTGGAAGGA
Found at i:26980028 original size:47 final size:47
Alignment explanation
Indices: 26979959--26980057 Score: 198
Period size: 47 Copynumber: 2.1 Consensus size: 47
26979949 TAAATGTTTT
26979959 TTTAAGTTAATAAAGTTAATAAAACTTTAATTTATTCAAATTAGATA
1 TTTAAGTTAATAAAGTTAATAAAACTTTAATTTATTCAAATTAGATA
26980006 TTTAAGTTAATAAAGTTAATAAAACTTTAATTTATTCAAATTAGATA
1 TTTAAGTTAATAAAGTTAATAAAACTTTAATTTATTCAAATTAGATA
26980053 TTTAA
1 TTTAA
26980058 ATTTTATTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.43
Consensus pattern (47 bp):
TTTAAGTTAATAAAGTTAATAAAACTTTAATTTATTCAAATTAGATA
Found at i:26981935 original size:17 final size:18
Alignment explanation
Indices: 26981897--26981935 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26981887 TGCTTCCTTG
26981897 AAAATTGTTATTTTCAGA
1 AAAATTGTTATTTTCAGA
*
26981915 AAAATT-TTCATTTTCATA
1 AAAATTGTT-ATTTTCAGA
26981933 AAA
1 AAA
26981936 CCATTTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (18 bp):
AAAATTGTTATTTTCAGA
Found at i:26982904 original size:33 final size:31
Alignment explanation
Indices: 26982834--26982904 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 31
26982824 CCCACACGCT
* * * *
26982834 CGTGTAGCCCACATGCCCAAAATGGCCTTGC
1 CGTGTGGCCCACAGGCCCAAAATGACCTGGC
26982865 CTGTGTGGCCCACACGGCCCAAAATGACCTAGGC
1 C-GTGTGGCCCACA-GGCCCAAAATGACCT-GGC
26982899 CGTGTG
1 CGTGTG
26982905 CGACACATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 1 0.03
32 11 0.33
33 18 0.55
34 3 0.09
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (31 bp):
CGTGTGGCCCACAGGCCCAAAATGACCTGGC
Found at i:26988472 original size:18 final size:18
Alignment explanation
Indices: 26988444--26988490 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
26988434 ATATTCAAGT
26988444 AATTATTAGAAGTTTCAAA
1 AATT-TTAGAAGTTTCAAA
26988463 AATTTTAGAAGTTTCAAA
1 AATTTTAGAAGTTTCAAA
*
26988481 AATTTCAGAA
1 AATTTTAGAA
26988491 TTTTTCAGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 23 0.85
19 4 0.15
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (18 bp):
AATTTTAGAAGTTTCAAA
Found at i:26989119 original size:25 final size:25
Alignment explanation
Indices: 26989091--26989140 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
26989081 AATTTAAGTA
26989091 AGGCAAATTAAAGTAAAAACAGTTT
1 AGGCAAATTAAAGTAAAAACAGTTT
*
26989116 AGGCAAATTAAAGTAAAAATAGTTT
1 AGGCAAATTAAAGTAAAAACAGTTT
26989141 TATGGCATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (25 bp):
AGGCAAATTAAAGTAAAAACAGTTT
Found at i:26999388 original size:13 final size:13
Alignment explanation
Indices: 26999370--26999394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26999360 GAGGTTTGAT
26999370 TTATTTTGAACTC
1 TTATTTTGAACTC
26999383 TTATTTTGAACT
1 TTATTTTGAACT
26999395 ATTGTTAGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (13 bp):
TTATTTTGAACTC
Found at i:27004497 original size:17 final size:17
Alignment explanation
Indices: 27004477--27004510 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27004467 CTTGTAAATC
*
27004477 ATTTATTTTAAATTGTT
1 ATTTACTTTAAATTGTT
*
27004494 ATTTGCTTTAAATTGTT
1 ATTTACTTTAAATTGTT
27004511 TTGCATACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (17 bp):
ATTTACTTTAAATTGTT
Found at i:27005534 original size:23 final size:23
Alignment explanation
Indices: 27005490--27005534 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
27005480 TCGTAGACCG
* *
27005490 AAATCGTTATTTTAATAAAACCT
1 AAATCGTTATATTAAAAAAACCT
27005513 AAATCGTT-TATTAAAAACAACC
1 AAATCGTTATATTAAAAA-AACC
27005535 GTTTTACGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (23 bp):
AAATCGTTATATTAAAAAAACCT
Found at i:27008595 original size:7 final size:7
Alignment explanation
Indices: 27008574--27008627 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
27008564 ACTTCACTTG
27008574 AGAAAAA
1 AGAAAAA
*
27008581 AAACAAAA
1 AGA-AAAA
27008589 AGAAAAA
1 AGAAAAA
27008596 AG--AAA
1 AGAAAAA
27008601 AGAAAAA
1 AGAAAAA
*
27008608 CG-AAAA
1 AGAAAAA
*
27008614 AGAAAAG
1 AGAAAAA
27008621 AGAAAAA
1 AGAAAAA
27008628 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
5 5 0.14
6 5 0.14
7 21 0.57
8 6 0.16
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:27008601 original size:12 final size:12
Alignment explanation
Indices: 27008574--27008626 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
27008564 ACTTCACTTG
*
27008574 AGAAAA-AAAAC
1 AGAAAAGAAAAA
27008585 A-AAAAGAAAAA
1 AGAAAAGAAAAA
27008596 AGAAAAGAAAAA
1 AGAAAAGAAAAA
* *
27008608 CGAAAAAGAAAAG
1 AG-AAAAGAAAAA
27008621 AGAAAA
1 AGAAAA
27008627 AGGAGAGGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
10 4 0.11
11 6 0.17
12 15 0.43
13 10 0.29
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (12 bp):
AGAAAAGAAAAA
Found at i:27008625 original size:13 final size:12
Alignment explanation
Indices: 27008579--27008628 Score: 57
Period size: 13 Copynumber: 4.0 Consensus size: 12
27008569 ACTTGAGAAA
*
27008579 AAAAACAAAAAG
1 AAAAAGAAAAAG
27008591 AAAAA-AGAAAAG
1 AAAAAGA-AAAAG
27008603 AAAAACGAAAAAG
1 AAAAA-GAAAAAG
27008616 AAAAGAGAAAAAG
1 AAAA-AGAAAAAG
27008629 GAGAGGCCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.03
12 15 0.44
13 16 0.47
14 2 0.06
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:27008981 original size:45 final size:46
Alignment explanation
Indices: 27008903--27008989 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 46
27008893 TCCATTTTAT
* *
27008903 TCATTTTGTATTTTTGACAAAATACGCCATCTTGATTAATTTATTC
1 TCATTTTGTATTCTAGACAAAATACGCCATCTTGATTAATTTATTC
** *
27008949 TCATTTTGTATTCTAG-CAAAATTTGCTATCTTGATTAATTT
1 TCATTTTGTATTCTAGACAAAATACGCCATCTTGATTAATTT
27008990 GTTCATTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 22 0.61
46 14 0.39
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.49
Consensus pattern (46 bp):
TCATTTTGTATTCTAGACAAAATACGCCATCTTGATTAATTTATTC
Found at i:27009098 original size:108 final size:108
Alignment explanation
Indices: 27008954--27009154 Score: 305
Period size: 108 Copynumber: 1.9 Consensus size: 108
27008944 TATTCTCATT
*
27008954 TTGTATTCTAGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAT
1 TTGTATTCTAGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAA
*
27009019 TTTCATCTTATCTATTGTGATAATCTTTGTCATCTTATACATC
66 TTTCATCTTATCTATTGTAATAATCTTTGTCATCTTATACATC
* * **
27009062 TTGTA-TCTCAGCAAAATTTGCTGTCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAA
1 TTGTATTCT-AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAA
* * *
27009126 ATTTCATTTTGTCTATTTTAATAATCTTT
65 ATTTCATCTTATCTATTGTAATAATCTTT
27009155 TTCAAGCATT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
107 3 0.04
108 80 0.96
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.48
Consensus pattern (108 bp):
TTGTATTCTAGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAA
TTTCATCTTATCTATTGTAATAATCTTTGTCATCTTATACATC
Found at i:27009912 original size:42 final size:41
Alignment explanation
Indices: 27009864--27009998 Score: 96
Period size: 42 Copynumber: 3.2 Consensus size: 41
27009854 GACAACAGAT
27009864 CTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * *
27009906 CTTGCC-TCTCTCGGTTG-TAGTTG-AGCTGGTTGAATACAACAGAT
1 CTTGCCTTC-CT-GATTGACAG-CGAAGCAGATCGAAGAC-A-A-AC
*
27009950 CTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGATCGAAGACAAAC
27009992 CTTGCCT
1 CTTGCCT
27009999 CTCTCGGTTG
Statistics
Matches: 66, Mismatches: 17, Indels: 20
0.64 0.17 0.19
Matches are distributed among these distances:
41 14 0.21
42 21 0.32
43 4 0.06
44 14 0.21
45 13 0.20
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (41 bp):
CTTGCCTTCCTGATTGACAGCGAAGCAGATCGAAGACAAAC
Done.