Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 93 of 172
Found at i:27009945 original size:86 final size:86
Alignment explanation
Indices: 27009597--27010499 Score: 1193
Period size: 86 Copynumber: 10.4 Consensus size: 86
27009587 TCAAAGAAAG
* * * * *
27009597 CAGATCTTGCCTTCCTGCATTAACAGTGAAGAAGATCGAAAACAAAGCTTTGCCTC-CATCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAA-CCTTGCCTCTC-TCGGTT
* ** *
27009661 GCAGTGGAGCTGGTCAAAGATAA
64 GTAGTGGAGCTGGTTGAAGACAA
* * * *
27009684 CAGATCTTGCCTTCCTGCATTAACACCGAAGCAGATCGAAAACAAAGCCTTGCCTC-CATCAGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAA-CCTTGCCTCTC-TCGGTT
* ** * *
27009748 GCAGTGGAGCTGGTCAAAGATAG
64 GTAGTGGAGCTGGTTGAAGACAA
* * * *
27009771 CAGATCTTGCCTTCCTACATTAACAACGAAGCAGATCGAAGACACAAACATTGCCTCTCTCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG--ACAAACCTTGCCTCTCTCGGTT
** *
27009836 GTAGCAGAGCTGGTTAAAGACAA
64 GTAGTGGAGCTGGTTGAAGACAA
*
27009859 CAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
* *
27009924 AGTTGAGCTGGTTGAATACAA
66 AGTGGAGCTGGTTGAAGACAA
*
27009945 CAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
* *
27010010 AGTGGAGTTGGTTGAATACAA
66 AGTGGAGCTGGTTGAAGACAA
* *
27010031 CAGATCTTGCCTTCCTGCATTGTCAGCGAAGTAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
* *
27010096 AATGGAGCTGGTTGAATACAA
66 AGTGGAGCTGGTTGAAGACAA
* **
27010117 CAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGATGAACCTTGCCTCTCTCGGTTGT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
* *
27010182 AGTGGATCTGGTTGGAGACAA
66 AGTGGAGCTGGTTGAAGACAA
* * *
27010203 CAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATTGAAGACACAAAACTTGCCTCTCTCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG--ACAAACCTTGCCTCTCTCGGTT
** *
27010268 GTAGCAGAGCTGGTTAAAGACAA
64 GTAGTGGAGCTGGTTGAAGACAA
*
27010291 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
27010356 AGTGGAGCTGGTTGAAGACAA
66 AGTGGAGCTGGTTGAAGACAA
**
27010377 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCATG-TCGAAGACACAAACCTTGCCTCTCTCAAT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCA-GATCGAAG--ACAAACCTTGCCTCTCTCGGT
27010441 TGTAGTGGAGCTGGTTGAAGACAA
63 TGTAGTGGAGCTGGTTGAAGACAA
* * * *
27010465 CA-AGTCTTACCTTCCTGTACTGACAGCGGAGCAGA
1 CAGA-TCTTGCCTTCCTGCATTGACAGCGAAGCAGA
27010500 CTAAAAATAA
Statistics
Matches: 739, Mismatches: 67, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
86 399 0.54
87 122 0.17
88 212 0.29
89 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (86 bp):
CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
AGTGGAGCTGGTTGAAGACAA
Found at i:27010060 original size:172 final size:172
Alignment explanation
Indices: 27009597--27010499 Score: 1193
Period size: 174 Copynumber: 5.2 Consensus size: 172
27009587 TCAAAGAAAG
* * * * *
27009597 CAGATCTTGCCTTCCTGCATTAACAGTGAAGAAGATCGAAAACAAAGCTTTGCCTC-CATCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAA-CCTTGCCTCTC-TCGGTT
* ** * * * *
27009661 GCAGTGGAGCTGGTCAAAGATAACAGATCTTGCCTTCCTGCATTAACACCGAAGCAGATCGAAAA
64 GTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGA
* * ** * *
27009726 CAAAGCCTTGCCTC-CATCAGTTGCAGTGGAGCTGGTCAAAGATAG
129 CAAA-CCTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGACAA
* * * *
27009771 CAGATCTTGCCTTCCTACATTAACAACGAAGCAGATCGAAGACACAAACATTGCCTCTCTCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG--ACAAACCTTGCCTCTCTCGGTT
** * *
27009836 GTAGCAGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGA
64 GTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGA
* *
27009901 CAAACCTTGCCTCTCTCGGTTGTAGTTGAGCTGGTTGAATACAA
129 CAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAA
*
27009945 CAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
* * * *
27010010 AGTGGAGTTGGTTGAATACAACAGATCTTGCCTTCCTGCATTGTCAGCGAAGTAGATCGAAGACA
66 AGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA
* *
27010075 AACCTTGCCTCTCTCGGTTGTAATGGAGCTGGTTGAATACAA
131 AACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAA
* **
27010117 CAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGATGAACCTTGCCTCTCTCGGTTGT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
* * * *
27010182 AGTGGATCTGGTTGGAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATTGAAGACA
66 AGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG--A
* ** *
27010247 CAAAACTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTAAAGACAA
129 CAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAA
*
27010291 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
27010356 AGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCATG-TCGAAGAC
66 AGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCA-GATCGAAG--
**
27010420 ACAAACCTTGCCTCTCTCAATTGTAGTGGAGCTGGTTGAAGACAA
128 ACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAA
* * * *
27010465 CA-AGTCTTACCTTCCTGTACTGACAGCGGAGCAGA
1 CAGA-TCTTGCCTTCCTGCATTGACAGCGAAGCAGA
27010500 CTAAAAATAA
Statistics
Matches: 647, Mismatches: 74, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
172 235 0.36
173 1 0.00
174 329 0.51
175 76 0.12
176 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (172 bp):
CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACCTTGCCTCTCTCGGTTGT
AGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA
AACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAA
Found at i:27010084 original size:42 final size:42
Alignment explanation
Indices: 27009950--27010084 Score: 123
Period size: 42 Copynumber: 3.2 Consensus size: 42
27009940 TACAACAGAT
*
27009950 CTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGTCAGCGAAGTAGATCGAAGACAAAC
* * * * * * * *
27009992 CTTGCC-TCTCT-CGGTTGT-AGTGGAGTTGGTTGAATACAACAGAT
1 CTTGCCTTC-CTGC-ATTGTCAGCGAAGTAGATCGAAGAC-A-A-AC
27010036 CTTGCCTTCCTGCATTGTCAGCGAAGTAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGTCAGCGAAGTAGATCGAAGACAAAC
27010078 CTTGCCT
1 CTTGCCT
27010085 CTCTCGGTTG
Statistics
Matches: 68, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
41 16 0.24
42 20 0.29
43 2 0.03
44 14 0.21
45 16 0.24
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGTCAGCGAAGTAGATCGAAGACAAAC
Found at i:27010463 original size:43 final size:42
Alignment explanation
Indices: 27010161--27010463 Score: 123
Period size: 44 Copynumber: 7.0 Consensus size: 42
27010151 ATCGAAGATG
* * *
27010161 AACCTTGCCTCTCTCGGTTGTAGTGGATCTGGTTGGAGACAACA
1 AACCTTGCCTCTCTC-ATTGTAGTGGAGCTGGTTGAAGAC-ACA
* * ** * * * *
27010205 GATCTTGCCT-TCCTGCATTAACAGCGAAGCAGATTGAAGACACA
1 AACCTTGCCTCT-CT-CATT-GTAGTGGAGCTGGTTGAAGACACA
* * ** *
27010249 AAACTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTAAAGACAACA
1 AACCTTGCCTCTCTC-ATTGTAGTGGAGCTGGTTGAAGAC-ACA
* * * * * * * *
27010293 GATCTTGCCT-TCCTGCATTGACAGCGAAGCAGATCGAAG--ACA
1 AACCTTGCCTCT-CT-CATTG-TAGTGGAGCTGGTTGAAGACACA
* *
27010335 AACCTTGCCTCTCTCGGTTTTAGTGGAGCTGGTTGAAGACAACA
1 AACCTTGCCTCTCTC-ATTGTAGTGGAGCTGGTTGAAGAC-ACA
* * * * * *
27010379 GATCTTGCCT-TCCTGCATTGACAGCGAAGCAT-GTCGAAGACACA
1 AACCTTGCCTCT-CT-CATTG-TAGTGGAGC-TGGTTGAAGACACA
27010423 AACCTTGCCTCTCTCAATTGTAGTGGAGCTGGTTGAAGACA
1 AACCTTGCCTCTCTC-ATTGTAGTGGAGCTGGTTGAAGACA
27010464 ACAAGTCTTA
Statistics
Matches: 183, Mismatches: 55, Indels: 43
0.65 0.20 0.15
Matches are distributed among these distances:
41 13 0.07
42 16 0.09
43 35 0.19
44 75 0.41
45 43 0.23
46 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (42 bp):
AACCTTGCCTCTCTCATTGTAGTGGAGCTGGTTGAAGACACA
Found at i:27010712 original size:95 final size:95
Alignment explanation
Indices: 27010542--27010744 Score: 325
Period size: 95 Copynumber: 2.1 Consensus size: 95
27010532 ACGGAGAAGC
* *
27010542 AGATCAAGGATGGCAAATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAAATTTTACCTCCCAGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
* * * *
27010607 CTCTCTCTGGTTGGTAGTGGAATGGATTGA
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGA
* *
27010637 AGATCAAAGATGGCAGATTTTACCTCCCAGTGATTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAAATTTTACCTCCCAGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
27010702 ATCTCCCTGGTTGGCAGTGGAATAGATTGA
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGA
*
27010732 AGATCGAAGATGG
1 AGATCAAAGATGG
27010745 TGAATCTTAT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 99 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGGCAAATTTTACCTCCCAGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
ATCTCCCTGGTTGGCAGTGGAATAGATTGA
Found at i:27010787 original size:95 final size:94
Alignment explanation
Indices: 27010542--27010837 Score: 260
Period size: 95 Copynumber: 3.1 Consensus size: 94
27010532 ACGGAGAAGC
* * * * * * *
27010542 AGATCAAGGATGGCAAATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATCTTACCTCCCAGAGATTA-AGTGGAGAACATTGAAGCCGATAATTCT
* * *
27010607 CTCTCTCTGGTTGGTAGTGGAATGGATTGA
65 ATCTCCCTGGTTGGTAGTGGAATAGATTGA
* * *
27010637 AGATCAAAGATGGCAGATTTTACCTCCCAGTGATTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATCTTACCTCCCAGAGATTA-AGTGGAGAACATTGAAGCCGATAATTCT
*
27010702 ATCTCCCTGGTTGGCAGTGGAATAGATTGA
65 ATCTCCCTGGTTGGTAGTGGAATAGATTGA
* * * *
27010732 AGATCGAAGATGG-TGAATCTTATCTTCCCA-AGA-T-AGTGGAGAAGCAGATTTAAGCC-ATTA
1 AGATCAAAGATGGCAG-ATCTTA-CCTCCCAGAGATTAAGTGGAGAA-C--ATTGAAGCCGA-TA
* * * * *
27010792 GTCCTATCCCCCTGGGTAGTAGTGGAATAGATTGA
60 ATTCTATCTCCCTGGTTGGTAGTGGAATAGATTGA
* *
27010827 AAATCACAGAT
1 AGATCAAAGAT
27010838 CTTATCTTTC
Statistics
Matches: 171, Mismatches: 24, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
92 8 0.05
93 1 0.01
94 3 0.02
95 153 0.89
96 6 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (94 bp):
AGATCAAAGATGGCAGATCTTACCTCCCAGAGATTAAGTGGAGAACATTGAAGCCGATAATTCTA
TCTCCCTGGTTGGTAGTGGAATAGATTGA
Found at i:27013706 original size:23 final size:23
Alignment explanation
Indices: 27013662--27013706 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
27013652 TCGTAGACCA
* *
27013662 AAATCGTTGTTTTAATAAAACCT
1 AAATCGTTGTATTAAAAAAACCT
27013685 AAATCGTT-TATTAAAAACAACC
1 AAATCGTTGTATTAAAAA-AACC
27013707 GTTTTACGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (23 bp):
AAATCGTTGTATTAAAAAAACCT
Found at i:27014284 original size:25 final size:25
Alignment explanation
Indices: 27014256--27014363 Score: 141
Period size: 25 Copynumber: 4.4 Consensus size: 25
27014246 TAGGATCATC
* *
27014256 ATGACATTTCATTGTCAAAATCAAA
1 ATGACATTTCATTTTCAGAATCAAA
27014281 ATGAC-TTGTCATTTTCAGAATCAAA
1 ATGACATT-TCATTTTCAGAATCAAA
*
27014306 ATGACATGTCATTTTCAGAATCAAA
1 ATGACATTTCATTTTCAGAATCAAA
*
27014331 ATGAC-TTGTCATTTTCAGGAT-AAA
1 ATGACATT-TCATTTTCAGAATCAAA
27014355 ATGACATTT
1 ATGACATTT
27014364 GATTATAAGG
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
24 12 0.16
25 61 0.82
26 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (25 bp):
ATGACATTTCATTTTCAGAATCAAA
Found at i:27014310 original size:50 final size:49
Alignment explanation
Indices: 27014256--27014363 Score: 171
Period size: 50 Copynumber: 2.2 Consensus size: 49
27014246 TAGGATCATC
27014256 ATGACATTTCATTGTCAAAATCAAAATGACTTGTCATTTTCAGAATCAAA
1 ATGACATTTCATTGTCAAAATCAAAATGACTTGTCATTTTCAGAAT-AAA
* * * *
27014306 ATGACATGTCATTTTCAGAATCAAAATGACTTGTCATTTTCAGGATAAA
1 ATGACATTTCATTGTCAAAATCAAAATGACTTGTCATTTTCAGAATAAA
27014355 ATGACATTT
1 ATGACATTT
27014364 GATTATAAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 11 0.21
50 42 0.79
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (49 bp):
ATGACATTTCATTGTCAAAATCAAAATGACTTGTCATTTTCAGAATAAA
Found at i:27014392 original size:49 final size:50
Alignment explanation
Indices: 27014256--27014392 Score: 136
Period size: 50 Copynumber: 2.8 Consensus size: 50
27014246 TAGGATCATC
* * *
27014256 ATGACATTTCATTGTCAA-AATCAAAATGACTTGTCATTTTCAGAATCAAA
1 ATGACATGTCATTAT-AAGAATCAAAATAACTTGTCATTTTCAGAATCAAA
* * * *
27014306 ATGACATGTCATTTTCAGAATCAAAATGACTTGTCATTTTCAGGAT-AAA
1 ATGACATGTCATTATAAGAATCAAAATAACTTGTCATTTTCAGAATCAAA
* * * *
27014355 ATGACATTTGATTATAAGGATCAGAATAACCTT-TCATT
1 ATGACATGTCATTATAAGAATCAAAATAA-CTTGTCATT
27014393 ACCAAAATCA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
49 31 0.42
50 43 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (50 bp):
ATGACATGTCATTATAAGAATCAAAATAACTTGTCATTTTCAGAATCAAA
Found at i:27015629 original size:25 final size:25
Alignment explanation
Indices: 27015568--27015640 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
27015558 AAAAAGGTAG
* *
27015568 CCACAAAGGCTCTCCAGAG-GATTCA
1 CCACAAAGGCTTTTCAGAGAG-TTCA
*
27015593 CCACCAAGGCTTTTCAGAGAGTTCA
1 CCACAAAGGCTTTTCAGAGAGTTCA
*
27015618 CCACAAAGGCTTTTTAGAGAGTT
1 CCACAAAGGCTTTTCAGAGAGTT
27015641 TTGTGTTTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (25 bp):
CCACAAAGGCTTTTCAGAGAGTTCA
Found at i:27018212 original size:14 final size:14
Alignment explanation
Indices: 27018195--27018222 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27018185 CTCACATTTC
27018195 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
27018209 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
27018223 GATTTCTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:27018213 original size:19 final size:18
Alignment explanation
Indices: 27018175--27018219 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
27018165 AACGATACGC
27018175 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
27018192 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
27018211 TTCTTTTCT
1 TTCTTTTCT
27018220 CCAGATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:27021508 original size:20 final size:20
Alignment explanation
Indices: 27021483--27021529 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27021473 GTACTATTTC
27021483 ATATTATCAAATCAATTCAA
1 ATATTATCAAATCAATTCAA
** *
27021503 ATATTATTTAATCGATTCAA
1 ATATTATCAAATCAATTCAA
*
27021523 ATTTTAT
1 ATATTAT
27021530 TATTTTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.45
Consensus pattern (20 bp):
ATATTATCAAATCAATTCAA
Found at i:27021530 original size:20 final size:20
Alignment explanation
Indices: 27021492--27021530 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27021482 CATATTATCA
27021492 AATCAATTCAAATATTATTT
1 AATCAATTCAAATATTATTT
* *
27021512 AATCGATTCAAATTTTATT
1 AATCAATTCAAATATTATT
27021531 ATTTTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (20 bp):
AATCAATTCAAATATTATTT
Found at i:27021743 original size:18 final size:17
Alignment explanation
Indices: 27021722--27021759 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
27021712 ATATTAAGAA
*
27021722 TTTTATTAAATTATATAT
1 TTTTACTAAATTATAT-T
27021740 TTTTACTAAATTATATT
1 TTTTACTAAATTATATT
27021757 TTT
1 TTT
27021760 AATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTACTAAATTATATT
Found at i:27021865 original size:18 final size:18
Alignment explanation
Indices: 27021831--27021881 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
27021821 TTAAGAATAT
*
27021831 TTAATATTA-ATAATTTTA
1 TTAA-ATTATATATTTTTA
27021849 TTAAATTATATATTTTTA
1 TTAAATTATATATTTTTA
*
27021867 CTAAATTATAT-TTTT
1 TTAAATTATATATTTT
27021882 AATAATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 8 0.27
18 22 0.73
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAAATTATATATTTTTA
Found at i:27021878 original size:122 final size:120
Alignment explanation
Indices: 27021528--27022261 Score: 1195
Period size: 122 Copynumber: 6.1 Consensus size: 120
27021518 TTCAAATTTT
* *
27021528 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTTATATAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
* * *
27021593 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAACTATATTTAAAAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATA
* *
27021648 ATTAATTTAAATTATATTTTATAGTATTATATATTATTATTTTAGTAAATTC---TAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
27021710 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATA--TTTAATAATA
*
27021767 ATTATTTGAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
*
27021832 TAATATTAATAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATA--TTTAATAATA
27021889 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
* *
27021954 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATT
66 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATA
* *
27022009 ATTATTTTAAATTATATTTTATACTATTATATATTATGATTTTATTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
* *
27022074 TAAATATAAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATCATA
66 T-AATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATA
* * * *
27022130 ATTATTTTAAATTATATTTTATAGTATTATATATTATTATTTTTATTAAATTCATATAATAATAT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGA-TTTTAGTAAATTCATTTAAGAATAT
* *
27022195 TTAAAATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
65 TTAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATA
*
27022251 ATTATGTTAAA
1 ATTATTTTAAA
27022262 ATATGATTAA
Statistics
Matches: 578, Mismatches: 29, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
117 53 0.09
119 58 0.10
120 122 0.21
121 147 0.25
122 198 0.34
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (120 bp):
ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATA
Found at i:27022064 original size:242 final size:239
Alignment explanation
Indices: 27021528--27022261 Score: 1211
Period size: 242 Copynumber: 3.0 Consensus size: 239
27021518 TTCAAATTTT
* *
27021528 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTTATATAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
* * * *
27021593 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAACTATATTTAAAAATAATTAATTTAA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATAATTATTTTAA
27021658 ATTATATTTTATAGTATTATATATTATTATTTTAGTAAATTC--TAAGAATATTTAATATTAAGA
131 ATTATATTTTATAGTATTATATATTATTATTTTAGTAAATTCATTAAGAATATTTAATATTAAGA
*
27021721 ATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATA
196 ATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATA
*
27021767 ATTATTTGAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
*
27021832 TAATATTAATAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTT
66 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATA--TTTAATAATAATTATTTT
*
27021897 AAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTA
129 AAATTATATTTTATAGTATTATATATTATTATTTTAGTAAATTCA-TTAAGAATATTTAATATTA
*
27021962 AGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATT
193 AGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
* *
27022009 ATTATTTTAAATTATATTTTATACTATTATATATTATGATTTTATTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
* *
27022074 TAAATATAAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATCATAATTATTTTA
66 T-AATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATAATTATTTTA
* * *
27022139 AATTATATTTTATAGTATTATATATTATTATTTTTATTAAATTCATATAATAATATTTAAAATTA
130 AATTATATTTTATAGTATTATATATTATTA-TTTTAGTAAATTCAT-TAAGAATATTTAATATTA
27022204 AGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
193 AGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
*
27022251 ATTATGTTAAA
1 ATTATTTTAAA
27022262 ATATGATTAA
Statistics
Matches: 464, Mismatches: 23, Indels: 13
0.93 0.05 0.03
Matches are distributed among these distances:
239 104 0.22
241 107 0.23
242 157 0.34
243 42 0.09
244 54 0.12
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (239 bp):
ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATAATTATTTTAA
ATTATATTTTATAGTATTATATATTATTATTTTAGTAAATTCATTAAGAATATTTAATATTAAGA
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
Found at i:27022101 original size:20 final size:20
Alignment explanation
Indices: 27022047--27022101 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
27022037 ATATATTATG
*
27022047 ATTTTATTAAATTCATTTAAGA
1 ATTTTATTAAATT-A-TAAAGA
*
27022069 A-TAT-TTAAA-TATAAAGA
1 ATTTTATTAAATTATAAAGA
27022086 ATTTTATTAAATTATA
1 ATTTTATTAAATTATA
27022102 TATTTTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 8
0.71 0.08 0.21
Matches are distributed among these distances:
17 6 0.22
18 3 0.11
19 6 0.22
20 9 0.33
21 2 0.07
22 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (20 bp):
ATTTTATTAAATTATAAAGA
Found at i:27022274 original size:55 final size:55
Alignment explanation
Indices: 27022162--27022287 Score: 141
Period size: 56 Copynumber: 2.3 Consensus size: 55
27022152 AGTATTATAT
* * *
27022162 ATTATTATTTTTATTAAATTCATATAATAATATTTAAAATTAAGAATTTTATTAA
1 ATTATTATTTTTATTAAATTCATATAATAATAATTAAAATTAAGAATATGATTAA
**
27022217 ATTATATATTTTTATTAAATT-ATATTTAATAATAATT-ATGTTAA-AATATGATTAA
1 ATTAT-TATTTTTATTAAATTCATA--TAATAATAATTAAAATTAAGAATATGATTAA
27022272 ATTATTTATTATTTAT
1 ATTA-TTATT-TTTAT
27022288 ATTAATAAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
55 25 0.41
56 26 0.43
57 10 0.16
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (55 bp):
ATTATTATTTTTATTAAATTCATATAATAATAATTAAAATTAAGAATATGATTAA
Found at i:27022468 original size:44 final size:46
Alignment explanation
Indices: 27022405--27022493 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
27022395 ACCTCTATTC
27022405 CATTCAACCAAAAACAAGAA-TACC-ATTACGCCTCTATTCCATTT
1 CATTCAACCAAAAACAAGAATTACCTATTACGCCTCTATTCCATTT
*
27022449 CATTCAACCAAACAA-AAGAATTACCTATTACGCCTCTATTTCATT
1 CATTCAACCAAA-AACAAGAATTACCTATTACGCCTCTATTCCATT
27022494 ACGCATCTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
44 17 0.41
45 6 0.15
46 18 0.44
ACGTcount: A:0.38, C:0.28, G:0.04, T:0.29
Consensus pattern (46 bp):
CATTCAACCAAAAACAAGAATTACCTATTACGCCTCTATTCCATTT
Found at i:27022496 original size:16 final size:16
Alignment explanation
Indices: 27022475--27022523 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
27022465 AGAATTACCT
*
27022475 ATTACGCCTCTATTTC
1 ATTACGCCTCTATTCC
*
27022491 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
27022507 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
27022523 A
1 A
27022524 ATACAGCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:27026212 original size:17 final size:18
Alignment explanation
Indices: 27026173--27026212 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
27026163 ATATACATAT
*
27026173 ATTTTGAATATTTTTATT
1 ATTTTGAATATTTTTATA
*
27026191 TTTTTGAATA-TTTTATA
1 ATTTTGAATATTTTTATA
27026208 ATTTT
1 ATTTT
27026213 ATATTATTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTTGAATATTTTTATA
Found at i:27026212 original size:18 final size:18
Alignment explanation
Indices: 27026169--27026204 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27026159 ATATATATAC
27026169 ATATATTTTGAATATTTTT
1 ATAT-TTTTGAATATTTTT
*
27026188 ATTTTTTTGAATATTTT
1 ATATTTTTGAATATTTT
27026205 ATAATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (18 bp):
ATATTTTTGAATATTTTT
Found at i:27027584 original size:9 final size:9
Alignment explanation
Indices: 27027572--27027648 Score: 64
Period size: 10 Copynumber: 7.9 Consensus size: 9
27027562 GTTCCATATG
*
27027572 TTTTATTAT
1 TTTTATAAT
27027581 TTTTATAAT
1 TTTTATAAT
*
27027590 TTATTAGAACT
1 TT-TTATAA-T
27027601 TTTTATAAGT
1 TTTTATAA-T
27027611 TTTTATGAAT
1 TTTTAT-AAT
*
27027621 TATTTATAAG
1 T-TTTATAAT
27027631 TTTTATAAGT
1 TTTTATAA-T
*
27027641 TTATATAA
1 TTTTATAA
27027649 ATTCCATGAT
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
9 17 0.30
10 29 0.52
11 10 0.18
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.58
Consensus pattern (9 bp):
TTTTATAAT
Found at i:27027605 original size:20 final size:20
Alignment explanation
Indices: 27027579--27027634 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
27027569 ATGTTTTATT
27027579 ATTTTTATAA-TTTATTA-GA
1 ATTTTTATAAGTTT-TTATGA
27027598 ACTTTTTATAAGTTTTTATGA
1 A-TTTTTATAAGTTTTTATGA
27027619 ATTATTTATAAGTTTT
1 ATT-TTTATAAGTTTT
27027635 ATAAGTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 1 0.03
20 14 0.42
21 18 0.55
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (20 bp):
ATTTTTATAAGTTTTTATGA
Found at i:27027616 original size:30 final size:29
Alignment explanation
Indices: 27027571--27027648 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 29
27027561 TGTTCCATAT
*
27027571 GTTTTATTA-TTTTTATAATT-TATTAGAA
1 GTTTTATAAGTTTTTATAATTAT-TTAGAA
* *
27027599 CTTTTTATAAGTTTTTATGAATTATTTATAA
1 -GTTTTATAAGTTTTTAT-AATTATTTAGAA
*
27027630 GTTTTATAAGTTTATATAA
1 GTTTTATAAGTTTTTATAA
27027649 ATTCCATGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
29 9 0.22
30 22 0.54
31 9 0.22
32 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.08, T:0.58
Consensus pattern (29 bp):
GTTTTATAAGTTTTTATAATTATTTAGAA
Found at i:27027645 original size:8 final size:9
Alignment explanation
Indices: 27027515--27027648 Score: 54
Period size: 9 Copynumber: 13.9 Consensus size: 9
27027505 TATTATTTTT
*
27027515 TTTTATAAT
1 TTTTATAAG
27027524 TTTTATAAG
1 TTTTATAAG
*
27027533 TTTATATAAA
1 TTT-TATAAG
27027543 TTTTAAATATA-
1 TTTT--ATA-AG
* *
27027554 TTTTTTATG
1 TTTTATAAG
** *
27027563 TTCCATATG
1 TTTTATAAG
* *
27027572 TTTTATTAT
1 TTTTATAAG
*
27027581 TTTTATAAT
1 TTTTATAAG
* *
27027590 TTATTAGAACT
1 TT-TTATAA-G
27027601 TTTTATAAG
1 TTTTATAAG
*
27027610 TTTTTATGAAT
1 -TTTTAT-AAG
27027621 TATTTATAAG
1 T-TTTATAAG
27027631 TTTTATAAG
1 TTTTATAAG
27027640 TTTATATAA
1 TTT-TATAA
27027649 ATTCCATGAT
Statistics
Matches: 96, Mismatches: 18, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
9 45 0.47
10 33 0.34
11 17 0.18
12 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (9 bp):
TTTTATAAG
Found at i:27029728 original size:2 final size:2
Alignment explanation
Indices: 27029721--27029747 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
27029711 CTAATCCTTT
27029721 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
27029748 CTTTTGAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27033755 original size:27 final size:27
Alignment explanation
Indices: 27033717--27033769 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
27033707 CTTCATTTGG
*
27033717 ATGAATTTGTACAGCTATATTCCCTTA
1 ATGAAGTTGTACAGCTATATTCCCTTA
27033744 ATGAAGTTGTACAGCTATATTCCCTT
1 ATGAAGTTGTACAGCTATATTCCCTT
27033770 TATAAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (27 bp):
ATGAAGTTGTACAGCTATATTCCCTTA
Found at i:27036261 original size:43 final size:43
Alignment explanation
Indices: 27036141--27036265 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
27036131 TTTATAGTGG
** *
27036141 CGTTTGTGGTAGAAGCGTCGCTAAAAATCATGAT-TCCTAGCGC
1 CGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGATCT-TTAGCGC
* * ** *
27036184 CGTTTGTAGTATAAGCCCCGCTAAAGGTCATGATCTTTAGCGG
1 CGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGATCTTTAGCGC
*
27036227 TGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGATCTTTA
1 CGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGATCTTTA
27036266 ACGGCTTTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
43 67 0.99
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGATCTTTAGCGC
Found at i:27042943 original size:14 final size:15
Alignment explanation
Indices: 27042910--27042952 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
27042900 AGTGATGTGA
27042910 AAAAAATG-AAAA-G
1 AAAAAATGAAAAATG
27042923 AAGAAAATGAAAAATG
1 AA-AAAATGAAAAATG
27042939 AAAAAAT-AAAAATG
1 AAAAAATGAAAAATG
27042953 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.07
14 13 0.48
15 9 0.33
16 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:27042950 original size:21 final size:21
Alignment explanation
Indices: 27042911--27042952 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
27042901 GTGATGTGAA
*
27042911 AAAAATGAAAAGAAGAAAATG
1 AAAAATGAAAAGAAAAAAATG
27042932 AAAAATGAAAA-AATAAAAATG
1 AAAAATGAAAAGAA-AAAAATG
27042953 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (21 bp):
AAAAATGAAAAGAAAAAAATG
Found at i:27044312 original size:44 final size:44
Alignment explanation
Indices: 27044257--27045200 Score: 934
Period size: 44 Copynumber: 21.4 Consensus size: 44
27044247 ATACTGGTGG
27044257 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
*
27044301 TGAAGTAGATCGAA-AGTAATGCATCTTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGA-TAATGGATCTTGTCTTCATGTATTGACA
*** *
27044345 TGAAGTAGATC-AGAGATAGCAGATCTTATCTTCATGTATTGACA
1 TGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTATTGACA
* *
27044389 TGAAGTAGATCGAAGGTAATGGATTTTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
* *** * ***
27044433 TGAAGTAGATC-AGAGAT-ATCAGATCTTGTCTTCCCATACTGGGGG
1 TGAAGTAGATCGA-AGATAAT-GGATCTTGTCTTCATGTA-TTGACA
* *
27044478 TGAAGTAGATCGAAGGTAATGGATCTTGCCTTCATGTATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
*** *
27044522 TGAAGTAGATC-AGAGATAGCAGATCTTATCTTCATGTATTGACA
1 TGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTATTGACA
27044566 TGAAGTAGATCGAA-AGTAATGGATCTTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGA-TAATGGATCTTGTCTTCATGTATTGACA
** *
27044610 TGAAGTAGATC-AGAGATAACAGATCTTATCTTCATGTATTGACA
1 TGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTATTGACA
* *
27044654 TGAAGTAGATCGAAGGTAATGGATATTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
* *** *** * ***
27044698 TGAAGTAGAT-TAGAGATAGCAGATCTTGTCTTCCCATACTGGTGG
1 TGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTA-TTGACA
* *
27044743 TGAAGTAGATCTAAGGTAATGGATCTTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
* * * *
27044787 TGAAGTAAATC-AGAGATAGTAGATCTTGTCTTCATGTATTGGCA
1 TGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTATTGACA
* *
27044831 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGGCG
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
***
27044875 TGACA-TAGATC-AGAGATAGCAGATCTTGTCTTCATGTATTTG-CA
1 TGA-AGTAGATCGA-AGATAATGGATCTTGTCTTCATGTA-TTGACA
*
27044919 TGAAGTAGATCGAAGATAATGAATCTTGTCTTCATGTATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
*** * *
27044963 TGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCATGTATTGGCG
1 TGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTATTGACA
* * * * *
27045007 TGAAGAAGATCGAAGA-AA-GCAGATATTGTCTTCATGTACTGGCG
1 TGAAGTAGATCGAAGATAATG--GATCTTGTCTTCATGTATTGACA
* ** * *
27045051 TGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT-AGCG
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGA-CA
* * * *
27045095 TGAAGTAGATTGAAGA-AA-GCAGATCTTGTCTTCATGTACTGGCG
1 TGAAGTAGATCGAAGATAATG--GATCTTGTCTTCATGTATTGACA
*** *
27045139 TGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGCATTGACA
1 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
27045183 TGAAGTAGATCGAAGATA
1 TGAAGTAGATCGAAGATA
27045201 CCAGTCTTAT
Statistics
Matches: 746, Mismatches: 116, Indels: 76
0.80 0.12 0.08
Matches are distributed among these distances:
43 19 0.03
44 648 0.87
45 74 0.10
46 5 0.01
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (44 bp):
TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACA
Found at i:27044730 original size:265 final size:264
Alignment explanation
Indices: 27044278--27045197 Score: 1309
Period size: 265 Copynumber: 3.5 Consensus size: 264
27044268 GAAGATAATG
*
27044278 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAAGTAATGCATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCG-AAGTAATGGATCTTGTCTTCATGTATTGA
27044343 CATGAAGTAGATCAGAGATAGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAA
65 CATGAAGTAGATCAGAGATAGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAA
* *
27044408 TGGATTTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATATCAGATCTTGTCTTCCCATACT
130 TGGATATTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATACT
*
27044473 GGGGGTGAAGTAGATCGAAGGTAATGGATCTTGCCTTCATGTATTGACATGAAGTAGATCAGAGA
195 GGGGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGA
27044538 TAGCA
260 TAGCA
*
27044543 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAAAGTAATGGATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCG-AAGTAATGGATCTTGTCTTCATGTATTGA
*
27044608 CATGAAGTAGATCAGAGATAACAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAA
65 CATGAAGTAGATCAGAGATAGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAA
*
27044673 TGGATATTGTCTTCATGTATTGACATGAAGTAGATTAGAGATAGCAGATCTTGTCTTCCCATACT
130 TGGATATTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATACT
* * *
27044738 GGTGGTGAAGTAGATCTAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAAATCAGAGA
195 GGGGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGA
*
27044803 TAGTA
260 TAGCA
* *
27044808 GATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAG-TAATGGATCTTGTCTTCATGTATTGA
* * *
27044873 CGTGACA-TAGATCAGAGATAGCAGATCTTGTCTTCATGTATTTG-CATGAAGTAGATCGAAGAT
65 CATGA-AGTAGATCAGAGATAGCAGATCTTATCTTCATGTA-TTGACATGAAGTAGATCGAAGGT
* * ***
27044936 AATGAATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTA
128 AATGGATATTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATA
* * * * * * * *
27045001 -TTGGCGTGAAGAAGATCGAA-G-AAAGCAGATATTGTCTTCATGTACTGGCGTGAAGTAGATC-
193 CTGGGGGTGAAGTAGATCGAAGGTAATG--GATCTTGTCTTCATGTATTGACATGAAGTAGATCA
* *
27045062 GAAGAAAACA
256 G-AGATAGCA
* * * * *
27045072 GATCTTGTCTTCATGTACT-AGCGTGAAGTAGATTGAAG-AAAGCAGATCTTGTCTTCATGTACT
1 GATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGTAATG--GATCTTGTCTTCATGTATT
* * * *
27045135 GGCGTGAAGTAGATC-GAAGATAGCAGATCTTGTCTTCATGCATTGACATGAAGTAGATCGAAG
63 GACATGAAGTAGATCAG-AGATAGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAG
27045198 ATACCAGTCT
Statistics
Matches: 598, Mismatches: 45, Indels: 25
0.90 0.07 0.04
Matches are distributed among these distances:
262 6 0.01
263 7 0.01
264 157 0.26
265 424 0.71
266 4 0.01
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (264 bp):
GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGTAATGGATCTTGTCTTCATGTATTGAC
ATGAAGTAGATCAGAGATAGCAGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAAT
GGATATTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATACTG
GGGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
AGCA
Found at i:27045198 original size:88 final size:87
Alignment explanation
Indices: 27044278--27045197 Score: 1179
Period size: 88 Copynumber: 10.4 Consensus size: 87
27044268 GAAGATAATG
*
27044278 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAAGTAATGCATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCG-AAGTAATGGATCTTGTCTTCATGTATTGA
27044343 CATGAAGTAGATCAGAGATAGCA
65 CATGAAGTAGATCAGAGATAGCA
* *
27044366 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATTTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAA-GTAATGGATCTTGTCTTCATGTATTGA
*
27044431 CATGAAGTAGATCAGAGATATCA
65 CATGAAGTAGATCAGAGATAGCA
*** * *** *
27044454 GATCTTGTCTTCCCATACTGGGGGTGAAGTAGATCGAAGGTAATGGATCTTGCCTTCATGTATTG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAA-GTAATGGATCTTGTCTTCATGTATTG
27044519 ACATGAAGTAGATCAGAGATAGCA
64 ACATGAAGTAGATCAGAGATAGCA
*
27044543 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAAAGTAATGGATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCG-AAGTAATGGATCTTGTCTTCATGTATTGA
*
27044608 CATGAAGTAGATCAGAGATAACA
65 CATGAAGTAGATCAGAGATAGCA
* *
27044631 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATATTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAA-GTAATGGATCTTGTCTTCATGTATTGA
*
27044696 CATGAAGTAGATTAGAGATAGCA
65 CATGAAGTAGATCAGAGATAGCA
*** * *** *
27044719 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCTAAGGTAATGGATCTTGTCTTCATGTATTG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAA-GTAATGGATCTTGTCTTCATGTATTG
* *
27044784 ACATGAAGTAAATCAGAGATAGTA
64 ACATGAAGTAGATCAGAGATAGCA
* *
27044808 GATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAG-TAATGGATCTTGTCTTCATGTATTGA
*
27044873 CGTGACA-TAGATCAGAGATAGCA
65 CATGA-AGTAGATCAGAGATAGCA
*
27044896 GATCTTGTCTTCATGTATTTG-CATGAAGTAGATCGAAGATAATGAATCTTGTCTTCATGTATTG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAG-TAATGGATCTTGTCTTCATGTATTG
27044960 ACATGAAGTAGATCAGAGATAGCA
64 ACATGAAGTAGATCAGAGATAGCA
* * * * * *
27044984 GATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAG-AAAGCAGATATTGTCTTCATGTACTG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGTAATG--GATCTTGTCTTCATGTATTG
* * * *
27045048 GCGTGAAGTAGATC-GAAGAAAACA
64 ACATGAAGTAGATCAG-AGATAGCA
* * * * *
27045072 GATCTTGTCTTCATGTACT-AGCGTGAAGTAGATTGAAG-AAAGCAGATCTTGTCTTCATGTACT
1 GATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGTAATG--GATCTTGTCTTCATGTATT
* *
27045135 GGCGTGAAGTAGATC-GAAGATAGCA
63 GACATGAAGTAGATCAG-AGATAGCA
*
27045160 GATCTTGTCTTCATGCATTGACATGAAGTAGATCGAAG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAG
27045198 ATACCAGTCT
Statistics
Matches: 740, Mismatches: 77, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
86 3 0.00
87 10 0.01
88 567 0.77
89 160 0.22
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (87 bp):
GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGTAATGGATCTTGTCTTCATGTATTGAC
ATGAAGTAGATCAGAGATAGCA
Found at i:27046099 original size:25 final size:25
Alignment explanation
Indices: 27046052--27046099 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
27046042 CTTAGTTTCG
**
27046052 TTTTGTTATTTTTTTTTGTTTTAGC
1 TTTTGTTATTTTTTTTTCATTTAGC
27046077 TTTT-TTATTTTATTTTTCATTTA
1 TTTTGTTATTTT-TTTTTCATTTA
27046100 AAATATAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.12, C:0.04, G:0.06, T:0.77
Consensus pattern (25 bp):
TTTTGTTATTTTTTTTTCATTTAGC
Found at i:27049111 original size:20 final size:19
Alignment explanation
Indices: 27049073--27049116 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
27049063 TTATATTTAT
*
27049073 AATATTTACTATAAATAAA
1 AATATTTACAATAAATAAA
*
27049092 AATATTCTACAATTAATAAA
1 AATATT-TACAATAAATAAA
*
27049112 TATAT
1 AATAT
27049117 ATTTGCTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (19 bp):
AATATTTACAATAAATAAA
Found at i:27052421 original size:23 final size:24
Alignment explanation
Indices: 27052377--27052432 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
27052367 AGGAACTTCG
27052377 TACTTTAGTTGCACTTACTTTAGT
1 TACTTTAGTTGCACTTACTTTAGT
**
27052401 TACTTTAGTT-CTTTTACTTTAGT
1 TACTTTAGTTGCACTTACTTTAGT
*
27052424 CACTTTAGT
1 TACTTTAGT
27052433 AAAACTGTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 19 0.66
24 10 0.34
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.54
Consensus pattern (24 bp):
TACTTTAGTTGCACTTACTTTAGT
Found at i:27055212 original size:29 final size:29
Alignment explanation
Indices: 27055169--27055232 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
27055159 GCAGACTATA
** *
27055169 TCACACGGCTGTGTGGC-AACTTGTGTGGG
1 TCACACGGCCATGTGGCTAA-TCGTGTGGG
*
27055198 TCACACGGCCATGTGGCTGATCGTGTGGG
1 TCACACGGCCATGTGGCTAATCGTGTGGG
27055227 TCACAC
1 TCACAC
27055233 AGTTGTGTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 29 0.97
30 1 0.03
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.25
Consensus pattern (29 bp):
TCACACGGCCATGTGGCTAATCGTGTGGG
Found at i:27055241 original size:29 final size:29
Alignment explanation
Indices: 27055191--27055261 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
27055181 GTGGCAACTT
* *
27055191 GTGTGGGTCACACGGCCATGTGGCT-GATC
1 GTGTGGGTCACACAGCCATGTGG-TAGACC
***
27055220 GTGTGGGTCACACAGTTGTGTGGTAGACC
1 GTGTGGGTCACACAGCCATGTGGTAGACC
*
27055249 GTGTAGGTCACAC
1 GTGTGGGTCACAC
27055262 GACTGTGTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 1 0.03
29 34 0.97
ACGTcount: A:0.17, C:0.21, G:0.37, T:0.25
Consensus pattern (29 bp):
GTGTGGGTCACACAGCCATGTGGTAGACC
Found at i:27058352 original size:842 final size:842
Alignment explanation
Indices: 27056906--27058587 Score: 3238
Period size: 842 Copynumber: 2.0 Consensus size: 842
27056896 TGTATGTTTG
27056906 AATGTATCAAAATATACAACTCACGATGTTGGGATTATGATAATCTCAAGTCTGAGGATCATATA
1 AATGTATCAAAATATACAACTCACGATGTTGGGATTATGATAATCTCAAGTCTGAGGATCATATA
*
27056971 CATATTAATCACTATGAGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTTATAACG
66 CATATTAATCACTATAAGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTTATAACG
27057036 GGTCAGTCCAATATGTTGTTCTCAAACACACATATTCATGCATCGATTTTGACATTCCATATCAA
131 GGTCAGTCCAATATGTTGTTCTCAAACACACATATTCATGCATCGATTTTGACATTCCATATCAA
27057101 TGACAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATTGTTGTCCTATCTAAC
196 TGACAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATTGTTGTCCTATCTAAC
27057166 AAAAATACTTGACTAAGGACCTTTTAAGAATAATCATATTACTCTCAAGACATTATTACAAAACA
261 AAAAATACTTGACTAAGGACCTTTTAAGAATAATCATATTACTCTCAAGACATTATTACAAAACA
*
27057231 ATTTATTTATACACACAGAAAAGAAATTGAAATAATAATTTTAACACCTTATATTAATAAACATG
326 ATTTATTTATACACACAGAAAAGAAACTGAAATAATAATTTTAACACCTTATATTAATAAACATG
27057296 ATAAATCAAGTATGTTATTACAAACATCTCATAATTGATCTTTGGGCATACTCTAACAATCTCCC
391 ATAAATCAAGTATGTTATTACAAACATCTCATAATTGATCTTTGGGCATACTCTAACAATCTCCC
27057361 ACTAGCACTAAGACCAATCACTTATATATCTAATACCAAGAGACTTAGTGTGACGATCATACTTC
456 ACTAGCACTAAGACCAATCACTTATATATCTAATACCAAGAGACTTAGTGTGACGATCATACTTC
* *
27057426 TGCTATGTCAGAGGCTTGGTTAGGGGATCAGTAATGTTATCATCTGTAGGTAGTCTGCATATCTC
521 TGCTATGTCAGAGGCTTGGTTAGAGGATCAGTAATGTTATCATCTGTAGGTACTCTGCATATCTC
*
27057491 TACATCCCCTCGATCGATAATCTCTCGAATAAGATGGTAGCGCCTAAGTATATGTTTGGATTGCT
586 TACATCCCCTCGATCGATAATCTCTCGAATAAGATGGCAGCGCCTAAGTATATGTTTGGATTGCT
27057556 GGTGAAATCTAGCTCTTTAGCTTGTGCAATGGCTCCATTGTTATCACATCAGAGTTCTATAACAT
651 GGTGAAATCTAGCTCTTTAGCTTGTGCAATGGCTCCATTGTTATCACATCAGAGTTCTATAACAT
27057621 CTGATATGCTAAGTACAACCCCTAGTTCAGTAATGAACTTCTTAATCCAAACTGCTTCCTTTGCT
716 CTGATATGCTAAGTACAACCCCTAGTTCAGTAATGAACTTCTTAATCCAAACTGCTTCCTTTGCT
27057686 GCCTCACTGGCTGTAATATACTCGTCCTCTATTGTAGAATCGGCTACTGTACTTTGCTTTAA
781 GCCTCACTGGCTGTAATATACTCGTCCTCTATTGTAGAATCGGCTACTGTACTTTGCTTTAA
*
27057748 AATGTATCAAAATATACAACTCACGATGTTGGGATTATGATGATCTCAAGTCTGAGGATCATATA
1 AATGTATCAAAATATACAACTCACGATGTTGGGATTATGATAATCTCAAGTCTGAGGATCATATA
27057813 CATATTAATCACTATAAGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTTATAACG
66 CATATTAATCACTATAAGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTTATAACG
27057878 GGTCAGTCCAATATGTTGTTCTCAAACACACATATTCATGCATCGATTTTGACATTCCATATCAA
131 GGTCAGTCCAATATGTTGTTCTCAAACACACATATTCATGCATCGATTTTGACATTCCATATCAA
27057943 TGACAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATTGTTGTCCTATCTAAC
196 TGACAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATTGTTGTCCTATCTAAC
27058008 AAAAATACTTGACTAAGGACCTTTTAAGAATAATCATATTACTCTCAAGACATTATTACAAAACA
261 AAAAATACTTGACTAAGGACCTTTTAAGAATAATCATATTACTCTCAAGACATTATTACAAAACA
*
27058073 GTTTATTTATACACACAGAAAAGAAACTGAAATAATAATTTTAACACCTTATATTAATAAACATG
326 ATTTATTTATACACACAGAAAAGAAACTGAAATAATAATTTTAACACCTTATATTAATAAACATG
27058138 ATAAATCAAGTATGTTATTACAAACATCTCATAATTGATCTTTGGGCATACTCTAACAATCTCCC
391 ATAAATCAAGTATGTTATTACAAACATCTCATAATTGATCTTTGGGCATACTCTAACAATCTCCC
27058203 ACTAGCACTAAGACCAATCACTTATATATCTAATACCAAGAGACTTAGTGTGACGATCATACTTC
456 ACTAGCACTAAGACCAATCACTTATATATCTAATACCAAGAGACTTAGTGTGACGATCATACTTC
* *
27058268 TGCTGTGTCAGGGGCTTGGTTAGAGGATCAGTAATGTTATCATCTGTAGGTACTCTGCATATCTC
521 TGCTATGTCAGAGGCTTGGTTAGAGGATCAGTAATGTTATCATCTGTAGGTACTCTGCATATCTC
**
27058333 TACATCCCCTCGATCGATAATCTCTCGAATAAGATGGCATTGCCTAAGTATATGTTTGGATTGCT
586 TACATCCCCTCGATCGATAATCTCTCGAATAAGATGGCAGCGCCTAAGTATATGTTTGGATTGCT
*
27058398 GGTGAAATCTAGCTCTTTAGCTTGTGCAATGGCTCCATTGTTATTACATCAGAGTTCTATAACAT
651 GGTGAAATCTAGCTCTTTAGCTTGTGCAATGGCTCCATTGTTATCACATCAGAGTTCTATAACAT
* *
27058463 CTGATATGCTAAGTACAACCCCTAGTTTAGTAATGAACTTTTTAATCCAAACTGCTTCCTTTGCT
716 CTGATATGCTAAGTACAACCCCTAGTTCAGTAATGAACTTCTTAATCCAAACTGCTTCCTTTGCT
27058528 GCCTCACTGGCTGTAATATACTCGTCCTCTATTGTAGAATCGGCTACTGTACTTTGCTTT
781 GCCTCACTGGCTGTAATATACTCGTCCTCTATTGTAGAATCGGCTACTGTACTTTGCTTT
27058588 GAACTCTTCC
Statistics
Matches: 826, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
842 826 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (842 bp):
AATGTATCAAAATATACAACTCACGATGTTGGGATTATGATAATCTCAAGTCTGAGGATCATATA
CATATTAATCACTATAAGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTTATAACG
GGTCAGTCCAATATGTTGTTCTCAAACACACATATTCATGCATCGATTTTGACATTCCATATCAA
TGACAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATTGTTGTCCTATCTAAC
AAAAATACTTGACTAAGGACCTTTTAAGAATAATCATATTACTCTCAAGACATTATTACAAAACA
ATTTATTTATACACACAGAAAAGAAACTGAAATAATAATTTTAACACCTTATATTAATAAACATG
ATAAATCAAGTATGTTATTACAAACATCTCATAATTGATCTTTGGGCATACTCTAACAATCTCCC
ACTAGCACTAAGACCAATCACTTATATATCTAATACCAAGAGACTTAGTGTGACGATCATACTTC
TGCTATGTCAGAGGCTTGGTTAGAGGATCAGTAATGTTATCATCTGTAGGTACTCTGCATATCTC
TACATCCCCTCGATCGATAATCTCTCGAATAAGATGGCAGCGCCTAAGTATATGTTTGGATTGCT
GGTGAAATCTAGCTCTTTAGCTTGTGCAATGGCTCCATTGTTATCACATCAGAGTTCTATAACAT
CTGATATGCTAAGTACAACCCCTAGTTCAGTAATGAACTTCTTAATCCAAACTGCTTCCTTTGCT
GCCTCACTGGCTGTAATATACTCGTCCTCTATTGTAGAATCGGCTACTGTACTTTGCTTTAA
Found at i:27066246 original size:26 final size:26
Alignment explanation
Indices: 27066192--27066246 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
27066182 AATTTTCTCC
*
27066192 AAATTTTATCGAGGGTAAAATCGTCA
1 AAATTTTATCGAGGGTAAAATCGTAA
*
27066218 AAATTTTA-CTGAGGGTAAAATTGTAA
1 AAATTTTATC-GAGGGTAAAATCGTAA
27066244 AAA
1 AAA
27066247 AATTTATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (26 bp):
AAATTTTATCGAGGGTAAAATCGTAA
Found at i:27066259 original size:26 final size:26
Alignment explanation
Indices: 27066202--27066262 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
27066192 AAATTTTATC
* *
27066202 GAGGGTAAAATCGTCAAAATTTTACT
1 GAGGGTAAAATCGTAAAAAATTTACT
* *
27066228 GAGGGTAAAATTGTAAAAAAATTTATT
1 GAGGGTAAAATCGT-AAAAAATTTACT
27066255 G-GGGTAAA
1 GAGGGTAAA
27066263 TTTTGGATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.30
Consensus pattern (26 bp):
GAGGGTAAAATCGTAAAAAATTTACT
Found at i:27067637 original size:24 final size:24
Alignment explanation
Indices: 27067587--27067637 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
27067577 TAAGAAGAAA
* **
27067587 ATGGTTGTTTGATATGTTTTTGAT
1 ATGGTTATTTGATATGTTTAAGAT
* *
27067611 ATGGTTATTTGGTATGTTTAAGGT
1 ATGGTTATTTGATATGTTTAAGAT
27067635 ATG
1 ATG
27067638 TTAAATGAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (24 bp):
ATGGTTATTTGATATGTTTAAGAT
Found at i:27074616 original size:22 final size:21
Alignment explanation
Indices: 27074571--27074616 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
27074561 CTCACACACC
* *
27074571 TGTGTCTTCCCCACACGCCTG
1 TGTGGCTTCCCCACACGCCCG
*
27074592 TGTGGCTTCCTCCGCACGCCCG
1 TGTGGCTTCC-CCACACGCCCG
27074614 TGT
1 TGT
27074617 TGTTAGACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.07, C:0.41, G:0.24, T:0.28
Consensus pattern (21 bp):
TGTGGCTTCCCCACACGCCCG
Found at i:27079776 original size:18 final size:18
Alignment explanation
Indices: 27079753--27079790 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
27079743 ATGTCTAAGA
27079753 TTAAATTAAAATTAAAGT
1 TTAAATTAAAATTAAAGT
27079771 TTAAATTAAAATTAAAGT
1 TTAAATTAAAATTAAAGT
27079789 TT
1 TT
27079791 CAAGTATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TTAAATTAAAATTAAAGT
Found at i:27090233 original size:14 final size:15
Alignment explanation
Indices: 27090214--27090242 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27090204 CGAGTCCAAA
27090214 AATAACCC-AATTAC
1 AATAACCCAAATTAC
27090228 AATAACCCAAATTAC
1 AATAACCCAAATTAC
27090243 CAGCCCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAACCCAAATTAC
Found at i:27090448 original size:23 final size:23
Alignment explanation
Indices: 27090395--27090440 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
27090385 GCACTGCACA
* *
27090395 CCTCCGTATGTGCCACGTCCGCG
1 CCTCCGTAGGTGCCACGTCCCCG
27090418 CCTCCGTAGGTGCCACGTCCCCG
1 CCTCCGTAGGTGCCACGTCCCCG
27090441 ATCTCGTACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.46, G:0.26, T:0.20
Consensus pattern (23 bp):
CCTCCGTAGGTGCCACGTCCCCG
Found at i:27091472 original size:16 final size:15
Alignment explanation
Indices: 27091453--27091493 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
27091443 CATAAAAAAG
27091453 TTTACTTAATATTTCA
1 TTTACTTAATATTT-A
* *
27091469 TTTAATTATTATTTA
1 TTTACTTAATATTTA
27091484 TTTACTTAAT
1 TTTACTTAAT
27091494 TTTGATCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTACTTAATATTTA
Found at i:27094398 original size:6 final size:7
Alignment explanation
Indices: 27094381--27094425 Score: 65
Period size: 7 Copynumber: 6.3 Consensus size: 7
27094371 TTGAGTCAAA
27094381 AAAAATG
1 AAAAATG
27094388 AAAAATG
1 AAAAATG
27094395 AAAAAATG
1 -AAAAATG
27094403 -AAAATG
1 AAAAATG
27094409 AAAAATG
1 AAAAATG
27094416 AAAAAATG
1 -AAAAATG
27094424 AA
1 AA
27094426 CAAGTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.17
7 15 0.43
8 14 0.40
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:27094399 original size:8 final size:8
Alignment explanation
Indices: 27094380--27094425 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
27094370 TTTGAGTCAA
27094380 AAAAAATG
1 AAAAAATG
27094388 -AAAAATG
1 AAAAAATG
27094395 AAAAAATG
1 AAAAAATG
27094403 --AAAATG
1 AAAAAATG
27094409 -AAAAATG
1 AAAAAATG
27094416 AAAAAATG
1 AAAAAATG
27094424 AA
1 AA
27094426 CAAGTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.17
7 13 0.37
8 16 0.46
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (8 bp):
AAAAAATG
Found at i:27094406 original size:14 final size:14
Alignment explanation
Indices: 27094380--27094419 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
27094370 TTTGAGTCAA
27094380 AAAAAATGAAAAATG
1 AAAAAATG-AAAATG
27094395 AAAAAATGAAAATG
1 AAAAAATGAAAATG
27094409 -AAAAATGAAAA
1 AAAAAATGAAAA
27094420 AATGAACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 11 0.44
14 6 0.24
15 8 0.32
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (14 bp):
AAAAAATGAAAATG
Found at i:27094434 original size:14 final size:14
Alignment explanation
Indices: 27094388--27094437 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
27094378 AAAAAAAATG
*
27094388 AAAAATGAAAAAAT
1 AAAAATGAAAAAGT
* *
27094402 GAAAATGAAAAATGA
1 AAAAATGAAAAA-GT
*
27094417 AAAAATGAACAAGT
1 AAAAATGAAAAAGT
27094431 AAAAATG
1 AAAAATG
27094438 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 19 0.66
15 10 0.34
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAAATGAAAAAGT
Found at i:27094434 original size:21 final size:21
Alignment explanation
Indices: 27094382--27094425 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
27094372 TGAGTCAAAA
27094382 AAAATGAAAAATGAAAAAATG
1 AAAATGAAAAATGAAAAAATG
27094403 AAAATGAAAAATGAAAAAATG
1 AAAATGAAAAATGAAAAAATG
27094424 AA
1 AA
27094426 CAAGTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AAAATGAAAAATGAAAAAATG
Found at i:27094435 original size:15 final size:15
Alignment explanation
Indices: 27094380--27094425 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
27094370 TTTGAGTCAA
27094380 AAAAAATGAAAAATG
1 AAAAAATGAAAAATG
27094395 AAAAAATG-AAAATG
1 AAAAAATGAAAAATG
27094409 -AAAAATGAAAAAATG
1 AAAAAATG-AAAAATG
27094424 AA
1 AA
27094426 CAAGTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.25
14 6 0.21
15 14 0.50
16 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:27096186 original size:132 final size:132
Alignment explanation
Indices: 27095824--27096401 Score: 650
Period size: 132 Copynumber: 4.4 Consensus size: 132
27095814 GACACCAGCC
* * ***
27095824 TTACCTCCCTATGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTATCTCCCTGGTTGGCAGTG
1 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTG
* *
27095889 GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGCT-GAGCAAATCGAAGACGGCTA
66 GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAG-TGGAGCAGATCGAAGACGGCGA
27095953 ATT
130 ATT
* * ** * * * * * * ** * * *
27095956 TTATCTTCAAG-AG-TA-AG-GAAGCAGATTTAAGCCA-CAAGCCCTATCTCCCTAGTCAGTAGT
1 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-TTCTATCTCCCTGGGCAGCAGT
* * ** * * *
27096016 GGAATAGGTT-AGGATTTTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGG
65 GGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
27096080 ATT
130 ATT
*
27096083 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATATCCCTGGGCAGCAGTG
1 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTG
* *
27096148 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAA
66 GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA
*
27096213 CT
131 TT
* * * *
27096215 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAGTTCTA-CTTCCCAGGGCAGCAGT
1 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGT
* ** * *
27096279 GGAATAGATTGAAGATTACAGATCTTACCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGACAA
65 GGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
27096344 ATT
130 ATT
** * * *
27096347 TTACCTCCCTAAGGTTACAGTGGAGTATATTGAAGCCACTAATCCTATCTCCCTG
1 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
27096402 AAATTATAGT
Statistics
Matches: 366, Mismatches: 70, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
126 1 0.00
127 56 0.15
128 38 0.10
129 4 0.01
130 4 0.01
131 39 0.11
132 223 0.61
133 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTG
GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA
TT
Found at i:27096653 original size:50 final size:50
Alignment explanation
Indices: 27096593--27096757 Score: 163
Period size: 50 Copynumber: 3.3 Consensus size: 50
27096583 AATGGAACAA
*
27096593 GATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCCGTTAAAAT
1 GATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAT
* * ** * ** * *
27096643 GATTAAAGCCACAACAGCGAATCTCACTT-CTCAAGCGGTGTAGTGAAACAT
1 GATTAAAGCCACAACGGTGAATCTTGCTTCCTCGA-CATTGCAGTTAAA-AT
* * * *
27096694 -ATTAAAGCCACATCGATGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
1 GATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAT
*
27096743 GATTAAAGCTACAAC
1 GATTAAAGCCACAAC
27096758 AGCAAATCTT
Statistics
Matches: 86, Mismatches: 25, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
49 5 0.06
50 76 0.88
51 5 0.06
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (50 bp):
GATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAT
Found at i:27096785 original size:100 final size:100
Alignment explanation
Indices: 27096592--27096850 Score: 297
Period size: 100 Copynumber: 2.6 Consensus size: 100
27096582 CAATGGAACA
* *
27096592 AGATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCCGTTAAAATGATTAAAGCCACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGATTAAAGCCACAA
* *
27096657 CAGCGAATCTCACTTCTCAAGCGGTGTAGTGAAAC
66 CAGCAAATCTCACTTCTCAAGCGATGTAGTGAAAC
* * * * *
27096692 ATATTAAAGCCACATCGATGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGATTAAAGCCACAA
* ** *
27096757 CAGCAAATCTTA-TTAC-CTTGGCGATGTAGTGGAAC
66 CAGCAAATCTCACTT-CTC-AAGCGATGTAGTGAAAC
* * * * * ** *
27096792 AGATTAACGCCATAACGGCGAACCTTTCTTCCTCGACATCACAGTTAAACAGATTAAAG
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGATTAAAG
27096851 TTACGAGTTA
Statistics
Matches: 132, Mismatches: 25, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
99 3 0.02
100 129 0.98
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (100 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGATTAAAGCCACAA
CAGCAAATCTCACTTCTCAAGCGATGTAGTGAAAC
Found at i:27097317 original size:14 final size:15
Alignment explanation
Indices: 27097298--27097326 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27097288 CGAGTCAAAA
27097298 AATAACCC-AATTAC
1 AATAACCCAAATTAC
27097312 AATAACCCAAATTAC
1 AATAACCCAAATTAC
27097327 CAGCCCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAACCCAAATTAC
Found at i:27102380 original size:23 final size:22
Alignment explanation
Indices: 27102337--27102380 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
27102327 TTCTAAGTCG
27102337 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
27102360 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
27102381 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:27102488 original size:45 final size:45
Alignment explanation
Indices: 27102419--27102518 Score: 164
Period size: 45 Copynumber: 2.2 Consensus size: 45
27102409 AATAATAACA
* *
27102419 GATACTCGGTGGATTCAGCACATAGCAACCACCTTATTAATCAAT
1 GATATTCGGTGGAATCAGCACATAGCAACCACCTTATTAATCAAT
* *
27102464 GATATTCGGTGGAATCAGCACATAGCAAGCACCTTATTAATTAAT
1 GATATTCGGTGGAATCAGCACATAGCAACCACCTTATTAATCAAT
27102509 GATATTCGGT
1 GATATTCGGT
27102519 TCACATAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (45 bp):
GATATTCGGTGGAATCAGCACATAGCAACCACCTTATTAATCAAT
Found at i:27102582 original size:51 final size:50
Alignment explanation
Indices: 27102524--27102710 Score: 223
Period size: 51 Copynumber: 3.7 Consensus size: 50
27102514 TCGGTTCACA
*
27102524 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCGATACACG
* * * * * * *
27102575 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCGATACACG
* * * * *
27102626 TAGTAGCCTACACATAGTACTACACATGCGACC-TATCATCCCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGA-TACACG
27102676 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
27102711 CACTTTCACT
Statistics
Matches: 110, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 4 0.04
50 35 0.32
51 69 0.63
52 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGATACACG
Found at i:27102698 original size:101 final size:101
Alignment explanation
Indices: 27102522--27102706 Score: 309
Period size: 101 Copynumber: 1.8 Consensus size: 101
27102512 ATTCGGTTCA
* * *
27102522 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCCATACACGTAGTAGCCTGCA
27102587 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
*
27102624 CATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATCCCAGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCCA-TACACGTAGTAGCCTGCA
27102688 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
27102707 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
100 8 0.10
101 37 0.47
102 33 0.42
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCCATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:27111736 original size:22 final size:21
Alignment explanation
Indices: 27111711--27111754 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
27111701 TGATAAAATT
27111711 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
27111733 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
27111754 T
1 T
27111755 CAACTTAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:27124516 original size:27 final size:27
Alignment explanation
Indices: 27124478--27124540 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
27124468 CGACATCATA
*
27124478 GATAGTCCAACAAGACATTAAACACAG
1 GATAGTCCAACAAGACACTAAACACAG
* * *
27124505 GATAGTTCAACAGGACACTAAACACCG
1 GATAGTCCAACAAGACACTAAACACAG
*
27124532 GATGGTCCA
1 GATAGTCCA
27124541 TTGATGCGGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.41, C:0.24, G:0.19, T:0.16
Consensus pattern (27 bp):
GATAGTCCAACAAGACACTAAACACAG
Found at i:27124621 original size:20 final size:19
Alignment explanation
Indices: 27124577--27124613 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
27124567 CATGTAAGAC
27124577 CATAGTTGAAAGACACTAT
1 CATAGTTGAAAGACACTAT
27124596 CATAGTTGAAA-ACACTAT
1 CATAGTTGAAAGACACTAT
27124614 GACATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (19 bp):
CATAGTTGAAAGACACTAT
Found at i:27126439 original size:21 final size:21
Alignment explanation
Indices: 27126394--27126456 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
27126384 TCTGAACCAT
* *
27126394 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
27126416 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
27126437 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
27126457 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:27133525 original size:11 final size:10
Alignment explanation
Indices: 27133496--27133544 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
27133486 AAATCTATCG
*
27133496 AAAA-TAATC
1 AAAATTAATA
27133505 AAAATTAATA
1 AAAATTAATA
27133515 AAAATTTAATA
1 AAAA-TTAATA
*
27133526 TAAAATTAATT
1 -AAAATTAATA
27133537 AAAATTAA
1 AAAATTAA
27133545 ACATGTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 4 0.11
10 16 0.46
11 11 0.31
12 4 0.11
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTAATA
Found at i:27137154 original size:45 final size:44
Alignment explanation
Indices: 27137081--27137243 Score: 177
Period size: 45 Copynumber: 3.6 Consensus size: 44
27137071 GGCTATAGTC
* *
27137081 TAAAATGAGTAAGATCATAGCTGGAAGATGTTATGACATCATGA
1 TAAAATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATGA
* *
27137125 TAAGGATGAGTAAGACCATAGCTGAAAGATACTCTA-G-CATCATGA
1 TAA-AATGAGTAAGACCATAGCTGAAAGAT-GT-TATGACATCATGA
* * *
27137170 TATAAATGAGTAAGGCCATAACTGAAAGATGTTATGACATCATGG
1 TA-AAATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATGA
* * *
27137215 TAAACAGGATTAAGACCATAGCTAAAAGA
1 TAAA-ATGAGTAAGACCATAGCTGAAAGA
27137244 AGCTACGACA
Statistics
Matches: 98, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
43 2 0.02
44 7 0.07
45 84 0.86
46 3 0.03
47 2 0.02
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.24
Consensus pattern (44 bp):
TAAAATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATGA
Found at i:27138456 original size:13 final size:13
Alignment explanation
Indices: 27138426--27138459 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
27138416 GTTCCCAAGT
*
27138426 TATGTTTT-AATC
1 TATGTTTTAAATA
27138438 TATGTTTTAAATA
1 TATGTTTTAAATA
27138451 TATGTTTTA
1 TATGTTTTA
27138460 TGCATGCCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59
Consensus pattern (13 bp):
TATGTTTTAAATA
Found at i:27145698 original size:137 final size:138
Alignment explanation
Indices: 27145459--27145717 Score: 360
Period size: 137 Copynumber: 1.9 Consensus size: 138
27145449 ATGGGCCTGA
* * *
27145459 TCACACAAGTTGTCGGTCAGAATGTAAGCTACACAATGCTACTCACACAAGCTGTCGAGTATCAG
1 TCACACAAGTTGTCGGTCAAAATGTAAGCTACACAATGCTACTCACACAAGCTATCAAGTATCAG
* * * * * * *
27145524 CAACTAATGCTAGACCTCATCCATCGGTAGGACATTCAAGACCAACACCCGAAACATAGTAACAT
66 CAACAAATGCTAGAACTCAGCCACCGGCAGGAAATTCAAGACCAACACCCAAAACATAGTAACAT
27145589 GGGTCTAC
131 GGGTCTAC
* *
27145597 TCACACAAGTTGTCGGTCAAAATGT-AGCTACACGATGCTACTCACACAAGCTATCAAGTATCCG
1 TCACACAAGTTGTCGGTCAAAATGTAAGCTACACAATGCTACTCACACAAGCTATCAAGTATCAG
* * *
27145661 TAACAAATG-TCAGAACTCAGCCACCGGCAGGAAATTCAAGGCCAGCACCCAAAACAT
66 CAACAAATGCT-AGAACTCAGCCACCGGCAGGAAATTCAAGACCAACACCCAAAACAT
27145718 GGAAACCCTA
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
136 1 0.01
137 80 0.76
138 24 0.23
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (138 bp):
TCACACAAGTTGTCGGTCAAAATGTAAGCTACACAATGCTACTCACACAAGCTATCAAGTATCAG
CAACAAATGCTAGAACTCAGCCACCGGCAGGAAATTCAAGACCAACACCCAAAACATAGTAACAT
GGGTCTAC
Found at i:27150896 original size:15 final size:15
Alignment explanation
Indices: 27150873--27150903 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27150863 CTCTTAATTT
27150873 TATAATTTTTTGTAA
1 TATAATTTTTTGTAA
*
27150888 TATATTTTTTTGTAA
1 TATAATTTTTTGTAA
27150903 T
1 T
27150904 TAGCTGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
TATAATTTTTTGTAA
Found at i:27154075 original size:16 final size:16
Alignment explanation
Indices: 27154045--27154080 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
27154035 TTTTTAACAT
27154045 AAATTAAACTAAATTCA
1 AAATTAAACTAAATT-A
27154062 AAATTAAA-TAAATTA
1 AAATTAAACTAAATTA
27154077 AAAT
1 AAAT
27154081 AATTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 6 0.32
17 8 0.42
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATTAAACTAAATTA
Found at i:27155714 original size:27 final size:27
Alignment explanation
Indices: 27155684--27156005 Score: 441
Period size: 27 Copynumber: 11.9 Consensus size: 27
27155674 AAATGATCGG
* *
27155684 AATACCTTTGAAGGGTAAAATGACTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
* *
27155711 AATACCCTCGAAAGGTAAAATGACTAA
1 AATACCCTCGAAGGGTAAAATGACTGA
* *
27155738 AATACCCTCGATGGGTAAAATGACCGA
1 AATACCCTCGAAGGGTAAAATGACTGA
*
27155765 AATACCCTCGAAGGGTAAAATGACTAA
1 AATACCCTCGAAGGGTAAAATGACTGA
27155792 AATACCCTCGAAGGGTAAAATGACTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
* * *
27155819 AATACCCTCTAAAGTTAAAATGACTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
* *
27155846 AATACCCTCAAAAGGTAAAATGACTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
27155873 AATACCCTCGAAGGGTAAAATGA-TCGA
1 AATACCCTCGAAGGGTAAAATGACT-GA
*
27155900 AATACCCCCGAAGGGTAAAATGACTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
* * * *
27155927 AATACCCCCAAAGCGTAAAATGATTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
27155954 AATACCCTCGAAGGGTAAAATGACTGA
1 AATACCCTCGAAGGGTAAAATGACTGA
* *
27155981 AACACCC-CCATAGGGTAAAATGACT
1 AATACCCTCGA-AGGGTAAAATGACT
27156006 ATTATACCCC
Statistics
Matches: 263, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.01
27 259 0.98
28 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (27 bp):
AATACCCTCGAAGGGTAAAATGACTGA
Found at i:27163245 original size:44 final size:44
Alignment explanation
Indices: 27163177--27163282 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
27163167 TTTTATCTAA
* * * *
27163177 GAAAAAAAG--TTTAAAAATATGAGAATATAATATTGGGTTGTT
1 GAAAAAAAGAATTTAAAAAGAGGAGAAGATAATATTAGGTTGTT
*
27163219 GAAAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTAGGTTGTT
1 GAAAAAAAGAATTTAAAAAGAGGAGAAGATAATATTAGGTTGTT
*
27163263 G-AAAAATGAATTTAAGAAAG
1 GAAAAAAAGAATTTAA-AAAG
27163283 GTATAAAAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 9 0.16
43 13 0.24
44 33 0.60
ACGTcount: A:0.51, C:0.01, G:0.21, T:0.27
Consensus pattern (44 bp):
GAAAAAAAGAATTTAAAAAGAGGAGAAGATAATATTAGGTTGTT
Found at i:27168400 original size:43 final size:43
Alignment explanation
Indices: 27168272--27168387 Score: 205
Period size: 43 Copynumber: 2.7 Consensus size: 43
27168262 ATCCTAGAAA
*
27168272 AAAAAAGAATTTAAAAAGAGGAGATGATAATCTTGGGATGTTG
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGATGTTG
*
27168315 AAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGCTGTTG
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGATGTTG
*
27168358 AAAAAAGAATTTAAAAAGAGGAGAAAATAA
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAA
27168388 ACATGGGTTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.53, C:0.03, G:0.23, T:0.22
Consensus pattern (43 bp):
AAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGGATGTTG
Found at i:27178673 original size:29 final size:28
Alignment explanation
Indices: 27178641--27178696 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
27178631 TCAGGTTACA
* * *
27178641 TTTTAGTTACTTATGTTTGAAATGTTATG
1 TTTTAGTCACTTACG-TTAAAATGTTATG
27178670 TTTTAGTCACTTACGTTAAAATGTTAT
1 TTTTAGTCACTTACGTTAAAATGTTAT
27178697 AACATTTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.52
Consensus pattern (28 bp):
TTTTAGTCACTTACGTTAAAATGTTATG
Found at i:27179118 original size:16 final size:14
Alignment explanation
Indices: 27179099--27179139 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
27179089 AATGTAAAAT
27179099 AAAGAAATAAAAGTTA
1 AAAGAAATAAAAG--A
27179115 AAAGAAATAAAAGA
1 AAAGAAATAAAAGA
*
27179129 AAAAAAATAAA
1 AAAGAAATAAA
27179140 TTGCTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.46
16 13 0.54
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (14 bp):
AAAGAAATAAAAGA
Found at i:27179481 original size:38 final size:39
Alignment explanation
Indices: 27179405--27179482 Score: 90
Period size: 38 Copynumber: 2.0 Consensus size: 39
27179395 TAAAATTGAA
* *
27179405 ATATTAAATAATTTATTAAAATAGTAAATTATATTAATT
1 ATATTAAATAATTTATTAAAATACTAAATTATAGTAATT
*
27179444 ATATT-AATAATTTATT-ATATGACTAAA-TATAAGTAATT
1 ATATTAAATAATTTATTAAAAT-ACTAAATTAT-AGTAATT
27179482 A
1 A
27179483 AATATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
37 6 0.18
38 23 0.68
39 5 0.15
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.45
Consensus pattern (39 bp):
ATATTAAATAATTTATTAAAATACTAAATTATAGTAATT
Found at i:27182836 original size:27 final size:27
Alignment explanation
Indices: 27182806--27182978 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
27182796 GTGCGGTCAA
*
27182806 TAAAATGA-TCGAAATACCCTCGTAGGG
1 TAAAATGACT-GAAATACCCTCATAGGG
* *
27182833 TAAAATGACTGAAATACCCTCGTTGGG
1 TAAAATGACTGAAATACCCTCATAGGG
*
27182860 TAAAATGACTGAAATACCCCCATAGGG
1 TAAAATGACTGAAATACCCTCATAGGG
* * * *
27182887 TAAAATTACTAAAATAACCTTATAGGG
1 TAAAATGACTGAAATACCCTCATAGGG
* *
27182914 TAAAATGACTGAAATACCCCCATTGGG
1 TAAAATGACTGAAATACCCTCATAGGG
* **
27182941 TAAAATAACCAAAATACCC-CTATAGGG
1 TAAAATGACTGAAATACCCTC-ATAGGG
27182968 TAAAATGACTG
1 TAAAATGACTG
27182979 TTATACCCCT
Statistics
Matches: 122, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 120 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCATAGGG
Found at i:27183296 original size:58 final size:58
Alignment explanation
Indices: 27183218--27183336 Score: 186
Period size: 58 Copynumber: 2.1 Consensus size: 58
27183208 GTGTGTTGAC
* *
27183218 TGGGTGAGTCGATTTTATCCCTACCTGGTGTGTTGGTGGTA-GGAAGTGGTGTGTTAGT
1 TGGGTGAGTCGATTTTATCCCCACCTGATGTGTTGGTGGTACGG-AGTGGTGTGTTAGT
* *
27183276 TGGGTGGGTCGATTTTATCCCCACCTGATGTGTTGGTGGTACGGAGTGGTGTGTTGGT
1 TGGGTGAGTCGATTTTATCCCCACCTGATGTGTTGGTGGTACGGAGTGGTGTGTTAGT
27183334 TGG
1 TGG
27183337 ATTGGGATAG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
58 54 0.96
59 2 0.04
ACGTcount: A:0.12, C:0.12, G:0.39, T:0.37
Consensus pattern (58 bp):
TGGGTGAGTCGATTTTATCCCCACCTGATGTGTTGGTGGTACGGAGTGGTGTGTTAGT
Found at i:27190470 original size:27 final size:27
Alignment explanation
Indices: 27190440--27190609 Score: 216
Period size: 27 Copynumber: 6.3 Consensus size: 27
27190430 GTGAGATCAA
*
27190440 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
27190467 TAAAATAACTGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
27190494 TAAAATGATCGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
** *
27190521 TAAAATGACTAAAATACCCCAATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
27190548 TAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
** *
27190575 TAAAATGACTAAAATACCACCAT-GGG
1 TAAAATGACCGAAATACCCCCATAGGG
27190601 TTAAAATGA
1 -TAAAATGA
27190610 TTGTTATACC
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
26 3 0.02
27 121 0.98
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGG
Found at i:27190507 original size:54 final size:54
Alignment explanation
Indices: 27190440--27190609 Score: 252
Period size: 54 Copynumber: 3.1 Consensus size: 54
27190430 GTGAGATCAA
* * * *
27190440 TAAAATGACCGAAATACCCTCATAGGGTAAAATAACTGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGG
* * *
27190494 TAAAATGATCGAAATACCCCCGTAGGGTAAAATGACTAAAATACCCCAATAGGG
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGG
*
27190548 TAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCACCAT-GGG
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGG
27190601 TTAAAATGA
1 -TAAAATGA
27190610 TTGTTATACC
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 3 0.03
54 101 0.97
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.19
Consensus pattern (54 bp):
TAAAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGG
Found at i:27196337 original size:41 final size:39
Alignment explanation
Indices: 27196285--27196464 Score: 130
Period size: 41 Copynumber: 4.4 Consensus size: 39
27196275 GGTCGAGGGG
* * * *
27196285 TTTAGTGGCGTTTTTAATCAATCGTCGCTAACGTTAAGGTA
1 TTTAGCGGCGTTTTTAAT-AAGCG-CGCTAAAGTTAAGGTT
* * *
27196326 TTTAGCGGCGTTTTCT-TTGAAGCGCAGCTAATGTT-TGGTCT
1 TTTAGCGGCGTTTT-TAAT-AAGCGC-GCTAAAGTTAAGGT-T
*
27196367 TTTAGCGGCGTTTTTAAATAAGCGCCGCTAAAGTTAAGATT
1 TTTAGCGGCGTTTTT-AATAAGCG-CGCTAAAGTTAAGGTT
* * * * *
27196408 TTTAGCGGCGTTTTTTTTAGAAGCGCCGCTAATGTTAGGGGT
1 TTTAGCGGCG--TTTTTAATAAGCG-CGCTAAAGTTAAGGTT
27196450 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
27196465 GTTGAAGCAC
Statistics
Matches: 113, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
40 10 0.09
41 64 0.57
42 34 0.30
43 5 0.04
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (39 bp):
TTTAGCGGCGTTTTTAATAAGCGCGCTAAAGTTAAGGTT
Found at i:27196396 original size:82 final size:83
Alignment explanation
Indices: 27196285--27196464 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 83
27196275 GGTCGAGGGG
* * * * *
27196285 TTTAGTGGCGTTTTTAATCAATCGTCGCTAACGTTAAGGTATTTAGCGGCGTTTTCTTT-GAAGC
1 TTTAGCGGCGTTTTTAATCAAGCGCCGCTAAAGTTAAGATATTTAGCGGCGTTTTCTTTAGAAGC
* *
27196349 GCAGCTAATGTTTGGTCT
66 GCAGCTAATGTTAGGGCT
* *
27196367 TTTAGCGGCGTTTTTAAAT-AAGCGCCGCTAAAGTTAAGATTTTTAGCGGCGTTTTTTTTAGAAG
1 TTTAGCGGCGTTTTT-AATCAAGCGCCGCTAAAGTTAAGATATTTAGCGGCGTTTTCTTTAGAAG
* *
27196431 CGCCGCTAATGTTAGGGGT
65 CGCAGCTAATGTTAGGGCT
27196450 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
27196465 GTTGAAGCAC
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
82 48 0.56
83 37 0.44
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (83 bp):
TTTAGCGGCGTTTTTAATCAAGCGCCGCTAAAGTTAAGATATTTAGCGGCGTTTTCTTTAGAAGC
GCAGCTAATGTTAGGGCT
Found at i:27196436 original size:42 final size:41
Alignment explanation
Indices: 27196310--27196477 Score: 178
Period size: 41 Copynumber: 4.1 Consensus size: 41
27196300 AATCAATCGT
* * *
27196310 CGCTAACGTTAAGGTATTTAGCGGCGTTTTCTTTGAAGCGC
1 CGCTAATGTTAAGGTTTTTAGCGGCGTTTTTTTTGAAGCGC
* * **
27196351 AGCTAATGTT-TGGTCTTTTAGCGGCGTTTTTAAAT-AAGCGC
1 CGCTAATGTTAAGGT-TTTTAGCGGCGTTTTT-TTTGAAGCGC
* *
27196392 CGCTAAAGTTAAGATTTTTAGCGGCGTTTTTTTTAGAAGCGC
1 CGCTAATGTTAAGGTTTTTAGCGGCGTTTTTTTT-GAAGCGC
* * * *
27196434 CGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGTTGAAGCAC
1 CGCTAATGTTAAGGTTTTTAGCGGCGTTTTTTTTGAAGCGC
27196475 CGC
1 CGC
27196478 AAAAAAACAT
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
40 4 0.04
41 61 0.59
42 38 0.37
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (41 bp):
CGCTAATGTTAAGGTTTTTAGCGGCGTTTTTTTTGAAGCGC
Found at i:27197432 original size:7 final size:7
Alignment explanation
Indices: 27197420--27197486 Score: 62
Period size: 7 Copynumber: 8.9 Consensus size: 7
27197410 GGATTAAGGT
27197420 TTAGGGG
1 TTAGGGG
27197427 TTAGGGG
1 TTAGGGG
*
27197434 TTAGGGAT
1 TTAGGG-G
27197442 TTAGGGG
1 TTAGGGG
*
27197449 TTAGGGAT
1 TTAGGG-G
27197457 TTAGGTGG
1 TTAGG-GG
*
27197465 ATTTAAGGG
1 --TTAGGGG
27197474 TTAGGGG
1 TTAGGGG
27197481 TTAGGG
1 TTAGGG
27197487 ATTTAGGATT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
7 31 0.63
8 11 0.22
9 3 0.06
10 4 0.08
ACGTcount: A:0.19, C:0.00, G:0.48, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:27197445 original size:15 final size:15
Alignment explanation
Indices: 27197427--27197493 Score: 84
Period size: 15 Copynumber: 4.3 Consensus size: 15
27197417 GGTTTAGGGG
27197427 TTAGGGGTTAGGGAT
1 TTAGGGGTTAGGGAT
27197442 TTAGGGGTTAGGGAT
1 TTAGGGGTTAGGGAT
27197457 TTAGGTGGATTTAAGGG--
1 TTAGG-GG--TT-AGGGAT
27197474 TTAGGGGTTAGGGAT
1 TTAGGGGTTAGGGAT
27197489 TTAGG
1 TTAGG
27197494 ATTTAGGGTG
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.09
14 2 0.04
15 25 0.54
16 4 0.09
17 5 0.11
18 2 0.04
19 4 0.09
ACGTcount: A:0.21, C:0.00, G:0.45, T:0.34
Consensus pattern (15 bp):
TTAGGGGTTAGGGAT
Found at i:27197499 original size:15 final size:15
Alignment explanation
Indices: 27197400--27197501 Score: 79
Period size: 15 Copynumber: 6.9 Consensus size: 15
27197390 GGGGTATGAA
27197400 TTAGGGTTT-GGGA-
1 TTAGGGTTTAGGGAT
* *
27197413 TTAAGGTTTAGGG-G
1 TTAGGGTTTAGGGAT
*
27197427 TTAGGGGTTAGGGAT
1 TTAGGGTTTAGGGAT
*
27197442 TTAGGGGTTAGGGAT
1 TTAGGGTTTAGGGAT
27197457 TTAGGTGGATTTAAGGG--
1 TTA-G-GG-TTT-AGGGAT
*
27197474 TTAGGGGTTAGGGAT
1 TTAGGGTTTAGGGAT
*
27197489 TTAGGATTTAGGG
1 TTAGGGTTTAGGG
27197502 TGTCAAGGGT
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
13 12 0.17
14 16 0.22
15 31 0.43
16 2 0.03
17 5 0.07
18 2 0.03
19 4 0.06
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (15 bp):
TTAGGGTTTAGGGAT
Found at i:27198978 original size:24 final size:24
Alignment explanation
Indices: 27198944--27198989 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
27198934 CGAAAAAGCT
27198944 ATTTTCTCCCCAAAAATTCCCCCCA
1 ATTTTCTCCCCAAAAA-TCCCCCCA
27198969 ATTTT-TCCCCAAAAATCCCCC
1 ATTTTCTCCCCAAAAATCCCCC
27198990 AAATCTAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 10 0.48
25 5 0.24
ACGTcount: A:0.28, C:0.43, G:0.00, T:0.28
Consensus pattern (24 bp):
ATTTTCTCCCCAAAAATCCCCCCA
Found at i:27199413 original size:12 final size:12
Alignment explanation
Indices: 27199396--27199420 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27199386 AGTTTGAAAC
27199396 TGTTCATAATTT
1 TGTTCATAATTT
27199408 TGTTCATAATTT
1 TGTTCATAATTT
27199420 T
1 T
27199421 CACTATCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TGTTCATAATTT
Found at i:27199822 original size:26 final size:26
Alignment explanation
Indices: 27199793--27199850 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
27199783 CTCGTTGCAT
*
27199793 AATAATTCTTACTCTATAGCTTATCA
1 AATAATTCTTACTCTATAGCTTATAA
27199819 AATAATTCTTACTCTATAGCTTATAA
1 AATAATTCTTACTCTATAGCTTATAA
27199845 AATAAT
1 AATAAT
27199851 ATAAATCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (26 bp):
AATAATTCTTACTCTATAGCTTATAA
Found at i:27202297 original size:69 final size:69
Alignment explanation
Indices: 27202223--27202382 Score: 239
Period size: 69 Copynumber: 2.3 Consensus size: 69
27202213 ATGAGAAAAT
* * *
27202223 ATTAACATCTATATTTTCAATAATAAATTTTATAATTTTAGAAATAATTGAAAATGTTATGTTCT
1 ATTAACATCTATATTTTCAATAATAAATTTTACAATTTGAAAAATAATTGAAAATGTTATGTTCT
27202288 AAAG
66 AAAG
* * *
27202292 ATTAACATCTATATTTTGAATAATAAATTTTACAATTTGAAAAATAATTGTAAATGTTATTTTCT
1 ATTAACATCTATATTTTCAATAATAAATTTTACAATTTGAAAAATAATTGAAAATGTTATGTTCT
*
27202357 AAAT
66 AAAG
* *
27202361 ATTAACACCTATATTTTTAATA
1 ATTAACATCTATATTTTCAATA
27202383 TATCACCCCA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (69 bp):
ATTAACATCTATATTTTCAATAATAAATTTTACAATTTGAAAAATAATTGAAAATGTTATGTTCT
AAAG
Found at i:27202516 original size:16 final size:16
Alignment explanation
Indices: 27202510--27202589 Score: 133
Period size: 16 Copynumber: 5.0 Consensus size: 16
27202500 ATACACAACT
27202510 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
27202526 TACTTAACTTGCATAA
1 TACATAACTTACATAA
27202542 TACATAACTTACATAA
1 TACATAACTTACATAA
*
27202558 TACACAACTTACATAA
1 TACATAACTTACATAA
27202574 TACATAACTTACATAA
1 TACATAACTTACATAA
27202590 CTCATTTATA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 58 1.00
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.31
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:27202518 original size:9 final size:9
Alignment explanation
Indices: 27202501--27202591 Score: 90
Period size: 9 Copynumber: 11.0 Consensus size: 9
27202491 ACTTATATAA
*
27202501 TACACAACT
1 TACATAACT
27202510 TACATAACT
1 TACATAACT
27202519 TACATAA--
1 TACATAACT
*
27202526 TACTTAACT
1 TACATAACT
*
27202535 TGCATAA--
1 TACATAACT
27202542 TACATAACT
1 TACATAACT
27202551 TACATAA--
1 TACATAACT
*
27202558 TACACAACT
1 TACATAACT
27202567 TACATAA--
1 TACATAACT
27202574 TACATAACT
1 TACATAACT
27202583 TACATAACT
1 TACATAACT
27202592 CATTTATACT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
7 25 0.37
9 42 0.63
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
TACATAACT
Found at i:27208119 original size:66 final size:66
Alignment explanation
Indices: 27208013--27208210 Score: 301
Period size: 66 Copynumber: 3.0 Consensus size: 66
27208003 AGCAAATTAC
* * *
27208013 ACAACATAAAACGGAGGCAGCA-TCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAG
1 ACAACTTAAAACAGATGCAGCAGT-GAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAG
27208077 CT
65 CT
*
27208079 ACAACTTAAAACAGATGCAGCAGTGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTTCAGC
1 ACAACTTAAAACAGATGCAGCAGTGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
27208144 T
66 T
* * *
27208145 ACAACTTAAAGCAGATGCAGCAGTGAGAGAAGCTGAGGTTCAACGAAAG-TATAAAGAACTCCAG
1 ACAACTTAAAACAGATGCAGCAGTGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAG
27208209 CT
65 CT
27208211 GCAGCTTTAA
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
66 117 0.96
67 5 0.04
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.16
Consensus pattern (66 bp):
ACAACTTAAAACAGATGCAGCAGTGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
T
Found at i:27208228 original size:66 final size:66
Alignment explanation
Indices: 27208029--27208248 Score: 300
Period size: 66 Copynumber: 3.3 Consensus size: 66
27208019 TAAAACGGAG
*
27208029 GCAGCA-TCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAACAG
1 GCAGCAGT-GAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAG
27208093 AT
65 AT
*
27208095 GCAGCAGTGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTTCAGCTACAACTTAAAGCAGA
1 GCAGCAGTGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGA
27208160 T
66 T
* * * * * *
27208161 GCAGCAGTGAGAGAAGCTGAGGTTCAACGAAAG-TATAAAGAACTCCAGCTGCAGCTTTAAGCTG
1 GCAGCAGTGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAG
27208225 AT
65 AT
* * * *
27208227 GCGGTAGCGAGAGAAGCAGAGG
1 GCAGCAGTGAGAGAAGCTGAGG
27208249 CTGCAGCGAG
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
66 134 0.96
67 5 0.04
ACGTcount: A:0.40, C:0.17, G:0.27, T:0.17
Consensus pattern (66 bp):
GCAGCAGTGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGA
T
Found at i:27208256 original size:21 final size:21
Alignment explanation
Indices: 27208232--27208289 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
27208222 CTGATGCGGT
*
27208232 AGCGAGAGAAGCAGAGGCTGC
1 AGCGAGGGAAGCAGAGGCTGC
*
27208253 AGCGAGGGAAGTAGAGGCTGC
1 AGCGAGGGAAGCAGAGGCTGC
*
27208274 AGCGAGGGAACCAGAG
1 AGCGAGGGAAGCAGAG
27208290 CAGCGTAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.33, C:0.17, G:0.45, T:0.05
Consensus pattern (21 bp):
AGCGAGGGAAGCAGAGGCTGC
Found at i:27208706 original size:43 final size:42
Alignment explanation
Indices: 27208632--27208795 Score: 195
Period size: 43 Copynumber: 3.8 Consensus size: 42
27208622 TTTAAAAAAA
* *
27208632 CGCCACTAAAGGTCATGGTCATTT-GCGGCGTTTGTCGGATAAG
1 CGCCGCTAAAGGTCATGGTC-TTTAGCGGCGTTTGTGGGA-AAG
*
27208675 CGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGGGAAAAG
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGG-AAAG
* ** ** *
27208718 TGCCGCTAAAGACCATGACCTTTAGTGGCGTTTGTGGTGAAAG
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGG-GAAAG
*
27208761 CGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGT
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGT
27208796 TTCTAAAAAT
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 3 0.03
43 96 0.95
44 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (42 bp):
CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAG
Found at i:27210839 original size:43 final size:43
Alignment explanation
Indices: 27210792--27210933 Score: 153
Period size: 43 Copynumber: 3.3 Consensus size: 43
27210782 GAATAGTACT
* *
27210792 TTTAGCGGCGTTTGTGGGTAAAGTGCTGCTAAAGGTTATGTTC
1 TTTAGCGGCGTTTGTGGGTAAAGAGCTGCTAAAGGTCATGTTC
* * *
27210835 TTTAGCGGCGCTTGT-GATAAA-AGCGTCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGGGTAAAGAGC-T-GCTAAAGGTCATGTTC
* * * *
27210878 TTTAGCGGCATTTGTGGGTAAAGCGCCGTTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGGGTAAAGAGCTGCTAAAGGTCATGTTC
* *
27210921 TATAACGGCGTTT
1 TTTAGCGGCGTTT
27210934 TTTCACATAA
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
41 2 0.03
42 6 0.08
43 65 0.81
44 5 0.06
45 2 0.03
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGTAAAGAGCTGCTAAAGGTCATGTTC
Found at i:27212418 original size:40 final size:40
Alignment explanation
Indices: 27212381--27212606 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
27212371 GCTACTCGTT
* * *
27212381 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
27212421 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
27212461 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
27212501 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
27212541 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
27212582 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
27212607 CATCATTCAA
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27220510 original size:40 final size:40
Alignment explanation
Indices: 27220473--27220692 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
27220463 GCTACTCGTT
* *
27220473 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCG--
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
27220511 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
27220550 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
27220590 CAAATGCCTTC-GG-CTTAGCCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
27220627 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
27220668 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
27220693 CATCATTCAA
Statistics
Matches: 164, Mismatches: 9, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
37 47 0.29
38 23 0.14
39 23 0.14
40 60 0.37
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27220543 original size:37 final size:38
Alignment explanation
Indices: 27220473--27220645 Score: 228
Period size: 37 Copynumber: 4.5 Consensus size: 38
27220463 GCTACTCGTT
* *
27220473 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCG-
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGA
27220511 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCG-A
27220550 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCG-A
*
27220590 CAAATGCCTTCGG-CTTAGCCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCG-A
27220627 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
27220646 GTCCGGATAT
Statistics
Matches: 126, Mismatches: 3, Indels: 11
0.90 0.02 0.08
Matches are distributed among these distances:
37 47 0.37
38 23 0.18
39 17 0.13
40 39 0.31
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGA
Found at i:27220652 original size:77 final size:79
Alignment explanation
Indices: 27220473--27220692 Score: 283
Period size: 77 Copynumber: 2.8 Consensus size: 79
27220463 GCTACTCGTT
* *
27220473 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCG--CAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG
27220535 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
*
27220550 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
27220614 -TTAGTAACTCGCA
66 TTTAGTAACTCGCA
* * * * *
27220627 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCC
27220690 GGA
63 GGA
27220693 CATCATTCAA
Statistics
Matches: 127, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
76 3 0.02
77 78 0.61
78 22 0.17
79 24 0.19
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:27220652 original size:117 final size:117
Alignment explanation
Indices: 27220473--27220692 Score: 295
Period size: 117 Copynumber: 1.9 Consensus size: 117
27220463 GCTACTCGTT
* *
27220473 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAAATGCCTTCGGACTTAACCCGGATT
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCAAATGCCTTCGGACTTAACCCGGATA
*
27220538 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
27220590 CAAATGCCTTC-GG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCG--CAAATGCCTTCGGA-CTTAACCCGG
* * *
27220652 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
27220693 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
114 10 0.11
115 10 0.11
116 16 0.18
117 46 0.51
118 8 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (117 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCAAATGCCTTCGGACTTAACCCGGATA
TAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27225265 original size:35 final size:35
Alignment explanation
Indices: 27225211--27225338 Score: 123
Period size: 35 Copynumber: 3.6 Consensus size: 35
27225201 TAAATGACAT
* *
27225211 TCGTCGGTTTATCCGACTAGTGCTGGGCCCAAATA
1 TCGTCGGTTTATCCAACTAGTGTTGGGCCCAAATA
* * *
27225246 TCGTTGGTTTATCCAACTAGAGTTGGGCTCACTAATTA
1 TCGTCGGTTTATCCAACTAGTGTTGGGC-C-C-AAATA
* * * *
27225284 TTCGTCAGTTTATCTAACTAGTGTTGGGCACACAT-
1 -TCGTCGGTTTATCCAACTAGTGTTGGGCCCAAATA
*
27225319 TCGTGGGTTTATCCAACTAG
1 TCGTCGGTTTATCCAACTAG
27225339 CGCTAGGCGC
Statistics
Matches: 74, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
34 17 0.23
35 24 0.32
36 3 0.04
37 2 0.03
38 4 0.05
39 24 0.32
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (35 bp):
TCGTCGGTTTATCCAACTAGTGTTGGGCCCAAATA
Found at i:27225373 original size:69 final size:69
Alignment explanation
Indices: 27225283--27225424 Score: 205
Period size: 69 Copynumber: 2.1 Consensus size: 69
27225273 CTCACTAATT
* * *
27225283 ATTC-GTCAGTTTATCTAACTAGTGTTGGGCACACATTCGTGGGTTTATCCAACTAGCGCTAGGC
1 ATTCTGTCAGTTTATCTAACTAGTGCTGGGCACACATTCGTCGATTTATCCAACTAGCGCTAGGC
27225347 GCAA
66 GCAA
* * * * *
27225351 CTTCTGTCAGTTTATCTGACTAGTGCTGGGCACACATTTGTCGATTTATCCGACTAGCGCTGGGC
1 ATTCTGTCAGTTTATCTAACTAGTGCTGGGCACACATTCGTCGATTTATCCAACTAGCGCTAGGC
27225416 GCAA
66 GCAA
27225420 ATTCT
1 ATTCT
27225425 TTCATGGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
68 3 0.05
69 61 0.95
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (69 bp):
ATTCTGTCAGTTTATCTAACTAGTGCTGGGCACACATTCGTCGATTTATCCAACTAGCGCTAGGC
GCAA
Found at i:27225406 original size:34 final size:34
Alignment explanation
Indices: 27225308--27225415 Score: 105
Period size: 34 Copynumber: 3.1 Consensus size: 34
27225298 TAACTAGTGT
* * * *
27225308 TGGGCACACATTCGTGGGTTTATCCAACTAGCGC
1 TGGGCACACATTTGTCGATTTATCCGACTAGCGC
* *
27225342 TAGGCGCA-AC-TTCTGTC-AGTTTATCTGACTAGTGC
1 T-GG-GCACACATT-TGTCGA-TTTATCCGACTAGCGC
27225377 TGGGCACACATTTGTCGATTTATCCGACTAGCGC
1 TGGGCACACATTTGTCGATTTATCCGACTAGCGC
27225411 TGGGC
1 TGGGC
27225416 GCAAATTCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
33 3 0.05
34 30 0.51
35 23 0.39
36 3 0.05
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.30
Consensus pattern (34 bp):
TGGGCACACATTTGTCGATTTATCCGACTAGCGC
Found at i:27226734 original size:42 final size:42
Alignment explanation
Indices: 27226688--27226772 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
27226678 TTACACATCT
* *
27226688 TGGGACACGGGCATGTGCCTTGATCGTGTGAGGCACATGGCC
1 TGGGACACGGGCATGTGCCTTGATCGTATGAGGCACACGGCC
* * *
27226730 TGGGACATGGGCATGTGCCTTGGTTGTATGAGGCACACGGCC
1 TGGGACACGGGCATGTGCCTTGATCGTATGAGGCACACGGCC
27226772 T
1 T
27226773 CACACAGCCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.16, C:0.22, G:0.38, T:0.24
Consensus pattern (42 bp):
TGGGACACGGGCATGTGCCTTGATCGTATGAGGCACACGGCC
Found at i:27229022 original size:33 final size:34
Alignment explanation
Indices: 27228974--27229040 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 34
27228964 AAGAAAAGGG
27228974 GAAACCTAATCTAAAAC-TGAAAAGAAAAGAAAA
1 GAAACCTAATCTAAAACATGAAAAGAAAAGAAAA
*
27229007 GAAACCTAAAT-TAAAACTATGAAAAGTAAAGAAA
1 GAAACCT-AATCTAAAAC-ATGAAAAGAAAAGAAA
27229041 GATGACCAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 13 0.43
34 3 0.10
35 14 0.47
ACGTcount: A:0.63, C:0.10, G:0.12, T:0.15
Consensus pattern (34 bp):
GAAACCTAATCTAAAACATGAAAAGAAAAGAAAA
Found at i:27241086 original size:24 final size:25
Alignment explanation
Indices: 27241047--27241096 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
27241037 AGAAACTAAG
27241047 GAAAATGAATGAATTAGGACCAAATT
1 GAAAATG-ATGAATTAGGACCAAATT
27241073 GAAAATG-TGAATTAGGACCAAATT
1 GAAAATGATGAATTAGGACCAAATT
27241097 AAGTGATGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 17 0.71
26 7 0.29
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (25 bp):
GAAAATGATGAATTAGGACCAAATT
Found at i:27244407 original size:145 final size:145
Alignment explanation
Indices: 27244176--27245041 Score: 1534
Period size: 145 Copynumber: 5.9 Consensus size: 145
27244166 GTATATATTA
* ** * * *
27244176 TTTAGGGATTAAGGTTAAATATAATTAATATAAAACTCTACATTATAAAATCATAATTGTATATA
1 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCAT--AATCATAATTGTATATA
*
27244241 GGGTTACATATTATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACC
64 GGGTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACC
27244306 ATAAAATTAGTTATAGT
129 ATAAAATTAGTTATAGT
27244323 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
1 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
*
27244388 ATTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
66 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
27244453 AAAATTAGTTATAGT
131 AAAATTAGTTATAGT
27244468 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
1 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
27244533 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
66 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
27244598 AAAATTAGTTATAGT
131 AAAATTAGTTATAGT
27244613 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
1 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
27244678 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
66 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
27244743 AAAATTAGTTATAGT
131 AAAATTAGTTATAGT
*
27244758 TTTAGGGTTTAAGGTTATGGATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
1 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
*
27244823 GTTAAATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
66 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
* *
27244888 AAAATTAGTTACAGG
131 AAAATTAGTTATAGT
* *
27244903 TTTAGGGTTTAAGGTTACGTATAATTAATATAAAAATATACATCATAATTATAATTGTATATAGG
1 TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
** **
27244968 GTTACATATCATTAATAATCTACCTTAATTATATAATGATAATTGTATATATATTATAATCTATT
66 GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTG--TATATATTATAATCTACC
27245033 ATAAAATTA
129 ATAAAATTA
27245042 ATTACATGTT
Statistics
Matches: 696, Mismatches: 21, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
145 631 0.91
147 65 0.09
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (145 bp):
TTTAGGGTTTAAGGTTATGTATAATTAATATAAAAATATACATCATAATCATAATTGTATATAGG
GTTACATATCATTAATAATCTACCTTAATTATATAATTCTAATTGTATATATTATAATCTACCAT
AAAATTAGTTATAGT
Found at i:27246893 original size:19 final size:19
Alignment explanation
Indices: 27246865--27246903 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
27246855 TACACGCTTA
*
27246865 TGTGCGAAGATACACTTCG
1 TGTGCCAAGATACACTTCG
*
27246884 TGTGCCAAGATGCACTTCG
1 TGTGCCAAGATACACTTCG
27246903 T
1 T
27246904 ACGACAGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (19 bp):
TGTGCCAAGATACACTTCG
Found at i:27246914 original size:19 final size:19
Alignment explanation
Indices: 27246892--27246936 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
27246882 CGTGTGCCAA
27246892 GATGCACTTCGTACGACAG
1 GATGCACTTCGTACGACAG
* *
27246911 GATGCACTTCGTGCGCCAG
1 GATGCACTTCGTACGACAG
27246930 GATGCAC
1 GATGCAC
27246937 CTCATGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (19 bp):
GATGCACTTCGTACGACAG
Found at i:27260472 original size:63 final size:62
Alignment explanation
Indices: 27260369--27260515 Score: 181
Period size: 63 Copynumber: 2.3 Consensus size: 62
27260359 CTGTGTGGCT
* ** *
27260369 CAAAACAGTGGGTTACACAGTCTAGACACACGCCCTTGTCTCTGGCTCGTGTATCC-CTAATTC
1 CAAAACAGTGAGTTACACAG-CTAGACACACGCCCTTGTCTCTAACTCGTGT-GCCTCTAATTC
* *
27260432 TAAAACAGTGAGTTACACAGCTTGAACACACG-CCTATGTCTCTAACTCGTGTGCCTCTAATTC
1 CAAAACAGTGAGTTACACAGCTAG-ACACACGCCCT-TGTCTCTAACTCGTGTGCCTCTAATTC
*
27260495 CAAAATAGTGAGTTACACAGC
1 CAAAACAGTGAGTTACACAGC
27260516 CTACCACACG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
62 8 0.11
63 65 0.89
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (62 bp):
CAAAACAGTGAGTTACACAGCTAGACACACGCCCTTGTCTCTAACTCGTGTGCCTCTAATTC
Found at i:27267067 original size:9 final size:9
Alignment explanation
Indices: 27267053--27267078 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
27267043 TCATCATCTT
27267053 ATTATTATA
1 ATTATTATA
27267062 ATTATTATA
1 ATTATTATA
27267071 ATTATTAT
1 ATTATTAT
27267079 TTACATGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTATTATA
Found at i:27271699 original size:31 final size:28
Alignment explanation
Indices: 27271644--27271708 Score: 85
Period size: 31 Copynumber: 2.2 Consensus size: 28
27271634 TCAAATCTAA
* *
27271644 TTTTTAAAATTTTATTTTATTTTTAGAT
1 TTTTTAAAATTTTATTATATTTTTAAAT
27271672 TTTTTAAAATTTTCAATATATATTTTTAAAT
1 TTTTTAAAATTTT--AT-TATATTTTTAAAT
27271703 TTTTTA
1 TTTTTA
27271709 TTTTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 13 0.41
30 2 0.06
31 17 0.53
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
TTTTTAAAATTTTATTATATTTTTAAAT
Found at i:27272043 original size:29 final size:29
Alignment explanation
Indices: 27272010--27272072 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
27272000 CCACTTTTGA
27272010 TAATTTTGA-AAATAAATTTTGTTTAAGGC
1 TAATTTT-ACAAATAAATTTTGTTTAAGGC
*
27272039 TAA-TTTACTAATAAATTTTGTTTAAGGC
1 TAATTTTACAAATAAATTTTGTTTAAGGC
27272067 TAATTT
1 TAATTT
27272073 ACTAATAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 1 0.03
28 25 0.81
29 5 0.16
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.48
Consensus pattern (29 bp):
TAATTTTACAAATAAATTTTGTTTAAGGC
Done.