genome.fa.s2243.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Length:  31807

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3418--3713	42	6.9	41	74	14	226	17	28	34	20	1.95
3452--3690	86	2.8	87	74	15	237	17	27	34	20	1.95
3418--3713	84	3.4	83	73	15	255	17	28	34	20	1.95
3922--3988	23	2.8	25	84	8	86	7	38	34	19	1.80
4015--4374	85	4.3	81	80	11	266	16	31	32	18	1.94
3998--4836	42	19.9	43	72	13	478	16	31	32	18	1.94
4153--4738	297	2.0	297	90	5	927	17	32	32	18	1.94
4362--4870	85	6.0	84	75	12	359	17	31	32	18	1.94
4521--4836	169	1.9	170	81	5	390	17	32	32	18	1.94
4927--4996	33	2.1	34	92	7	117	7	37	38	17	1.77
13801--14092	42	6.9	42	80	9	319	17	28	34	19	1.95
14301--14379	24	3.3	24	85	5	106	6	37	35	20	1.78
14397--15426	43	24.3	43	77	6	740	16	32	33	18	1.93
14384--15397	85	12.0	86	81	4	946	16	32	33	18	1.93
14526--15426	256	3.5	254	84	4	1040	16	32	33	18	1.93
14455--15192	299	2.5	299	91	2	1162	16	32	32	18	1.93
14386--15397	299	3.4	297	84	6	1114	16	32	33	17	1.93
15326--15404	34	2.3	34	93	2	131	7	35	37	18	1.80
15403--15451	25	2.0	25	91	0	80	12	22	46	18	1.82
15439--15531	42	2.2	44	90	3	145	12	27	39	19	1.88
23431--23722	42	6.9	42	80	9	319	17	28	34	19	1.95
23931--24009	24	3.3	24	85	5	106	6	37	35	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24123--24216	48	2.0	48	83	8	120	40	25	12	21	1.89
26334--26401	35	2.1	33	89	10	104	14	29	14	41	1.86
26667--26760	48	2.0	48	87	8	138	40	27	12	19	1.88
27229--28184	43	22.6	43	78	6	918	16	32	33	17	1.93
27226--28184	85	11.4	83	81	7	635	16	32	33	17	1.93
27245--27979	299	2.5	298	91	2	1183	16	32	32	17	1.93
28113--28191	34	2.3	34	93	2	131	7	35	37	18	1.80
28190--28238	25	2.0	25	91	0	80	12	22	46	18	1.82
28226--28318	42	2.2	44	90	3	145	12	27	39	19	1.88

Tables:   1

The End!