genome.fa.s2256.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3556
Parameters: 2 7 7 80 10 50 1000
Length:  38428

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6025--6209	40	4.7	40	81	6	207	24	22	27	25	2.00
6078--6232	79	2.0	79	82	7	190	25	20	27	25	1.99
27653--28117	27	17.7	27	70	14	158	40	21	7	30	1.82
27765--28116	54	6.6	54	82	4	365	40	22	7	30	1.82
28101--28537	27	16.3	27	85	2	549	34	18	20	25	1.96
30918--31001	25	3.3	24	82	11	87	42	17	7	32	1.77
31013--31071	26	2.3	26	85	8	77	37	22	5	35	1.76
31116--31314	52	3.9	51	77	17	182	42	21	7	29	1.79
31117--31332	26	8.3	26	69	16	135	41	20	7	30	1.80
31326--31830	26	20.3	25	76	16	423	32	18	23	26	1.97
31326--31830	104	5.1	103	79	14	476	32	18	23	26	1.97
31326--31830	51	10.1	51	77	13	452	32	18	23	26	1.97
31341--31829	129	3.9	127	78	13	450	31	17	23	26	1.97
31600--31804	72	2.9	70	75	17	192	33	18	21	26	1.96
34202--34288	27	3.3	26	78	13	79	39	22	6	31	1.81
34304--34360	26	2.2	26	93	0	96	35	22	3	38	1.72
34406--34676	26	10.7	26	78	9	249	39	21	8	30	1.83
34660--35131	52	9.1	51	76	13	371	32	17	23	26	1.97
34660--35131	25	18.3	26	79	11	436	32	17	23	26	1.97
34660--35131	130	3.7	129	80	10	479	32	17	23	26	1.97
35524--35644	37	3.3	37	86	0	179	20	18	13	47	1.81
35579--35644	6	10.8	6	80	9	80	18	18	15	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37845--37934	25	3.6	25	72	19	71	45	15	7	31	1.74
37867--37963	24	3.9	25	73	24	89	43	16	8	31	1.77
37831--37958	51	2.6	47	77	17	127	41	16	9	32	1.80
37944--38160	50	4.3	49	76	17	128	33	17	22	26	1.96
37968--38166	77	2.6	74	82	12	237	31	17	24	26	1.97
37976--38383	25	16.8	25	75	17	294	29	17	24	27	1.98
38274--38359	22	3.7	23	82	13	97	26	13	29	30	1.95
38082--38338	142	1.8	141	80	9	308	29	17	24	28	1.98
37977--38383	23	16.8	24	72	19	226	29	17	24	27	1.98
38322--38428	25	4.3	26	77	14	70	30	15	27	26	1.96

Tables:   1

The End!