genome.fa.s229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold436_ERROPOS236738
Parameters: 2 7 7 80 10 50 1000
Length:  236738

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2359--2420	28	2.2	29	91	2	99	25	12	32	29	1.93
8605--8724	29	4.2	29	91	1	188	25	14	31	29	1.94
18405--18459	27	2.0	27	100	0	110	36	7	25	30	1.83
28318--28505	40	4.7	40	86	3	272	26	27	20	26	1.99
28295--28505	80	2.7	78	88	4	300	26	26	20	27	1.99
28283--28505	119	1.9	119	84	5	299	26	26	20	27	1.99
32494--32667	40	4.4	39	86	6	201	24	27	21	26	2.00
32527--32674	40	3.7	40	88	5	228	25	27	22	25	2.00
32527--32674	79	1.9	80	88	4	228	25	27	22	25	2.00
44035--44152	40	3.0	40	96	0	209	29	29	18	22	1.97
52151--52202	27	2.0	26	82	10	63	34	1	17	46	1.59
54743--54833	41	2.2	40	82	5	110	38	19	21	19	1.94
59054--59116	6	10.3	6	75	16	58	50	12	17	19	1.77
59075--59135	25	2.5	25	86	2	88	47	13	19	19	1.82
59293--59415	27	4.6	27	85	4	133	34	20	22	21	1.96
59281--59415	54	2.5	53	84	5	164	37	20	21	20	1.95
59574--59638	22	3.0	22	77	8	69	32	21	26	20	1.97
59983--60046	27	2.4	28	78	7	78	37	23	18	20	1.94
60026--60375	27	13.0	27	90	1	497	25	20	19	35	1.96
62382--62439	27	2.2	26	84	3	71	36	18	20	24	1.95
62407--62548	67	2.1	67	84	5	176	30	19	28	21	1.97
62479--62529	27	1.9	26	84	4	66	35	17	27	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65020--65089	28	2.5	28	90	4	106	27	12	27	32	1.93
72909--72978	28	2.5	28	88	4	97	27	11	27	34	1.91
85928--85970	21	2.0	22	81	4	52	34	16	0	48	1.46
93441--93730	101	2.9	102	96	1	539	35	7	15	41	1.76
120650--120687	20	1.9	20	94	0	67	36	0	23	39	1.55
120657--120696	16	2.7	15	85	11	55	35	0	25	40	1.56
120695--120870	47	3.8	47	84	5	189	33	10	28	26	1.90
120704--120779	23	3.2	25	62	24	63	28	13	34	23	1.92
120695--120973	94	2.9	96	81	10	265	34	8	27	28	1.87
120793--120976	47	3.8	48	88	6	291	35	6	26	30	1.82
121123--121228	36	2.9	37	92	2	178	23	17	32	26	1.97
122493--122819	40	8.2	40	96	0	573	25	22	26	25	2.00
122760--122878	59	2.0	59	83	0	148	21	20	31	26	1.98
126890--127083	47	4.1	47	91	0	298	33	10	28	26	1.90
126919--126990	22	3.1	22	64	24	58	33	13	29	23	1.93
126964--127039	23	3.2	25	62	24	63	28	13	34	23	1.92
127054--127237	98	1.9	96	88	4	280	37	6	26	29	1.81
127053--127237	48	3.8	48	87	5	273	37	6	25	30	1.81
127384--127489	37	2.9	37	94	1	178	23	17	32	26	1.97
223688--223821	53	2.4	54	85	7	180	26	13	25	34	1.93
224953--225064	55	2.0	55	94	0	197	30	5	18	45	1.72
227386--227514	27	4.8	27	89	3	179	26	22	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229849--229887	20	2.0	19	85	14	53	53	15	0	30	1.42
231146--231264	41	2.8	42	76	13	118	33	26	15	24	1.95
231858--231888	15	2.1	15	93	0	53	54	22	0	22	1.44

Tables:   1

The End!