Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3364

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13718
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:13522 original size:34 final size:37

Alignment explanation


    Indices: 13479--13551  Score: 107
    Period size: 36  Copynumber: 2.0  Consensus size: 37

      13469 ACATGAAATT

                              *                  
      13479 GCTTAACTAG-AAATCGATATTTTATA-A-TTTCACG
          1 GCTTAACTAGAAAATCGAGATTTTATATAGTTTCACG

                                                  
      13513 GCTTAACTAGAAAAATCGAGATTTTATATAGTTTCACG
          1 GCTTAACTAG-AAAATCGAGATTTTATATAGTTTCACG

             
      13551 G
          1 G

      13552 ATAAGGAAGT


Statistics
Matches: 34,  Mismatches: 1, Indels: 4
        0.87            0.03        0.10

Matches are distributed among these distances:
  34   10  0.29
  36   15  0.44
  37    1  0.03
  38    8  0.24

ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36


Consensus pattern (37 bp):   
GCTTAACTAGAAAATCGAGATTTTATATAGTTTCACG

Done.