Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3332
Parameters: 2 7 7 80 10 50 1000
Length:  12649

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
379--431
15
3.3
15
73
14
52
45
9
3
41
1.54
378--435
16
3.6
16
77
11
57
48
8
3
39
1.51
385--436
16
3.2
16
75
5
59
55
9
3
30
1.50
537--785
17
14.2
18
72
12
173
46
9
14
30
1.75
573--660
33
2.7
32
83
5
104
47
7
12
31
1.70
590--663
33
2.2
33
88
4
105
50
6
10
32
1.64
632--777
54
2.7
55
77
11
142
46
10
15
28
1.78
537--785
35
7.1
37
75
10
154
46
9
14
30
1.75
889--931
21
2.0
22
86
8
63
41
9
13
34
1.77
1092--1141
17
2.9
17
82
8
57
74
0
0
26
0.83
1272--1332
22
3.0
19
80
19
70
0
21
0
78
0.75
1277--1328
11
4.8
11
84
13
72
0
23
0
76
0.78
1272--1329
21
2.7
22
81
5
75
0
20
0
79
0.74
1596--1631
13
2.8
13
91
8
56
0
36
0
63
0.94
2039--2105
30
2.3
30
86
2
91
44
4
22
28
1.72
2371--2588
54
4.1
55
88
8
324
37
17
16
28
1.92
2567--2601
14
2.5
14
90
0
52
60
2
17
20
1.49
2692--2938
85
2.8
86
82
11
306
35
19
18
26
1.95
2693--2945
90
2.9
88
83
9
322
36
18
18
26
1.94
2868--3184
122
2.6
122
92
2
519
36
21
14
27
1.93
3003--3818
190
4.3
193
92
6
1400
34
21
14
30
1.92
3520--3747
123
1.9
123
82
5
291
34
21
14
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11570--11621
26
2.0
27
96
3
97
46
11
11
30
1.76
11936--11986
18
3.1
16
76
13
50
56
9
3
29
1.49
11936--11987
16
3.1
16
73
15
52
57
9
3
28
1.48
11986--12333
18
19.9
17
70
11
181
45
10
14
29
1.79
12137--12213
32
2.3
34
84
8
104
51
6
10
31
1.61
12088--12333
35
7.1
36
75
11
139
46
8
14
30
1.75
12435--12477
22
2.0
21
90
4
68
39
9
13
37
1.78

Tables:   1

The End!