Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 109 of 218
Found at i:31991944 original size:20 final size:20
Alignment explanation
Indices: 31991919--31991983 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
31991909 TGCACATACA
31991919 TACCCCTATTTGTACTTCGG
1 TACCCCTATTTGTACTTCGG
* * * **
31991939 TACCCCTAAATTGCACATATG
1 TACCCCT-ATTTGTACTTCGG
* *
31991960 TGCCCCTGTTTGTACTTCGG
1 TACCCCTATTTGTACTTCGG
31991980 TACC
1 TACC
31991984 TCTGAATTGC
Statistics
Matches: 31, Mismatches: 13, Indels: 2
0.67 0.28 0.04
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.18, C:0.31, G:0.15, T:0.35
Consensus pattern (20 bp):
TACCCCTATTTGTACTTCGG
Found at i:31992089 original size:41 final size:41
Alignment explanation
Indices: 31991882--31992087 Score: 250
Period size: 41 Copynumber: 5.0 Consensus size: 41
31991872 TATGTGATTA
* * * * *
31991882 CCTATTTATACTTTGGTACCCCTAAATTGCACATACATACC
1 CCTATTTGTACTTCGGTACCCCTGAATTGCACATACGTGCC
* *
31991923 CCTATTTGTACTTCGGTACCCCTAAATTGCACATATGTGCC
1 CCTATTTGTACTTCGGTACCCCTGAATTGCACATACGTGCC
* *
31991964 CCTGTTTGTACTTCGGTACCTCTGAATTGCACATACGTGCC
1 CCTATTTGTACTTCGGTACCCCTGAATTGCACATACGTGCC
** *
31992005 CCTATTTGTACTTTAGTACCCCTGAATTGCATATACGTGCC
1 CCTATTTGTACTTCGGTACCCCTGAATTGCACATACGTGCC
* * * * * *
31992046 CTTTTTTGTGCTTCGGTACCCTTGAATTTCAAATACGTGCC
1 CCTATTTGTACTTCGGTACCCCTGAATTGCACATACGTGCC
31992087 C
1 C
31992088 TTGTTTACAC
Statistics
Matches: 143, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 143 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (41 bp):
CCTATTTGTACTTCGGTACCCCTGAATTGCACATACGTGCC
Found at i:31998424 original size:14 final size:14
Alignment explanation
Indices: 31998405--31998432 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31998395 TAAAGTTATA
31998405 TTTAATAATTCATT
1 TTTAATAATTCATT
31998419 TTTAATAATTCATT
1 TTTAATAATTCATT
31998433 AATAAATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:32004126 original size:37 final size:37
Alignment explanation
Indices: 32004076--32004154 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
32004066 TTATTACGAA
* * *
32004076 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
32004113 GTCTTACCCGGACAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32004150 GTCTT
1 GTCTT
32004155 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32004494 original size:49 final size:47
Alignment explanation
Indices: 32004273--32004878 Score: 1009
Period size: 47 Copynumber: 12.7 Consensus size: 47
32004263 CCCTTCGGGA
* * * * * *
32004273 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32004320 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004414 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004461 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004510 CTTATCACATAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32004559 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32004606 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004655 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004704 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004751 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32004798 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32004844 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32004879 AGAATCCTAA
Statistics
Matches: 536, Mismatches: 16, Indels: 15
0.95 0.03 0.03
Matches are distributed among these distances:
45 1 0.00
46 42 0.08
47 306 0.57
49 187 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32004566 original size:145 final size:141
Alignment explanation
Indices: 32004273--32004878 Score: 1009
Period size: 145 Copynumber: 4.2 Consensus size: 141
32004263 CCCTTCGGGA
* * * * * * * *
32004273 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32004338 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32004403 GGCCATTAGGC
131 GGCCATTAGGC
32004414 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32004479 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAGATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT--ATATACACTTTCACATTCATCA
32004544 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
32004559 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
32004624 ACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
32004689 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
32004704 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32004769 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT-
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32004833 GGCCATTAGGC
131 GGCCATTAGGC
* *
32004844 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32004879 AGAATCCTAA
Statistics
Matches: 444, Mismatches: 14, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
139 1 0.00
140 42 0.09
141 74 0.17
143 95 0.21
145 230 0.52
147 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:32010044 original size:37 final size:37
Alignment explanation
Indices: 32010000--32010108 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
32009990 GATAGCTTTA
32010000 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
32010037 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
32010074 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
32010109 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:32011437 original size:48 final size:49
Alignment explanation
Indices: 32011364--32011506 Score: 216
Period size: 48 Copynumber: 2.9 Consensus size: 49
32011354 ATGTGAACAT
*
32011364 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
32011414 GTGATATGTGATT-TGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
32011462 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
32011507 AGAAAACGAA
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
48 45 0.52
49 37 0.43
50 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:32014708 original size:37 final size:37
Alignment explanation
Indices: 32014664--32014772 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
32014654 GATAGCTTTA
32014664 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
32014701 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
32014738 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
32014773 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:32016997 original size:16 final size:17
Alignment explanation
Indices: 32016978--32017012 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32016968 AGTGAAGGAA
32016978 AAAGATGTGTGG-AATG
1 AAAGATGTGTGGAAATG
*
32016994 AAAGGTGTGTGGAAATG
1 AAAGATGTGTGGAAATG
32017011 AA
1 AA
32017013 TAGGTGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (17 bp):
AAAGATGTGTGGAAATG
Found at i:32017004 original size:18 final size:18
Alignment explanation
Indices: 32016983--32017018 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
32016973 AGGAAAAAGA
32016983 TGTGTGG-AATGAA-AGG
1 TGTGTGGAAATGAATAGG
32016999 TGTGTGGAAATGAATAGG
1 TGTGTGGAAATGAATAGG
32017017 TG
1 TG
32017019 AAGGGGGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.28
Consensus pattern (18 bp):
TGTGTGGAAATGAATAGG
Found at i:32027320 original size:17 final size:18
Alignment explanation
Indices: 32027298--32027331 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32027288 AGATGTGTGG
*
32027298 AATGAA-AGGTGTATGGA
1 AATGAATAGGTGAATGGA
32027315 AATGAATAGGTGAATGG
1 AATGAATAGGTGAATGG
32027332 GGTATTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24
Consensus pattern (18 bp):
AATGAATAGGTGAATGGA
Found at i:32055535 original size:12 final size:13
Alignment explanation
Indices: 32055518--32055546 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32055508 CTCATACATG
32055518 AATAAATAAA-GC
1 AATAAATAAATGC
32055530 AATAAATAAATGC
1 AATAAATAAATGC
32055543 AATA
1 AATA
32055547 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:32059189 original size:16 final size:16
Alignment explanation
Indices: 32059168--32059201 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32059158 TTAATTGTTT
32059168 TTTATTTCTTTAGGAA
1 TTTATTTCTTTAGGAA
*
32059184 TTTATTTCTTTAGTAA
1 TTTATTTCTTTAGGAA
32059200 TT
1 TT
32059202 AGGACTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.62
Consensus pattern (16 bp):
TTTATTTCTTTAGGAA
Found at i:32069069 original size:40 final size:40
Alignment explanation
Indices: 32068971--32069273 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
32068961 TCCTCGTTCA
* * * * *
32068971 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32069010 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32069050 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32069090 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32069130 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32069170 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32069210 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32069250 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32069274 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.16
40 193 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32076633 original size:40 final size:40
Alignment explanation
Indices: 32076535--32076837 Score: 371
Period size: 40 Copynumber: 7.6 Consensus size: 40
32076525 TCCTCGTTCA
* * * * *
32076535 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32076574 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32076614 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32076654 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32076694 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
32076734 AATGCCTTC-GGATCTTAATCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32076774 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32076814 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32076838 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.16
40 193 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32079895 original size:7 final size:8
Alignment explanation
Indices: 32079861--32079890 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
32079851 TTTAAATAAT
32079861 TTTTATTA
1 TTTTATTA
32079869 -TTTATTA
1 TTTTATTA
32079876 TTTTATTA
1 TTTTATTA
32079884 TTTTATT
1 TTTTATT
32079891 GTTTAGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTATTA
Found at i:32082224 original size:30 final size:30
Alignment explanation
Indices: 32082190--32082248 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32082180 ATTTTACGAG
32082190 TCTAAGGGC-AAAATCGT-AATTTTGTCAAAC
1 TCTAAGGGCAAAAAT-GTAAATTTT-TCAAAC
32082220 TCTAAGGGCAAAAATGTAAATTTTTCAAA
1 TCTAAGGGCAAAAATGTAAATTTTTCAAA
32082249 GTACGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.31
Consensus pattern (30 bp):
TCTAAGGGCAAAAATGTAAATTTTTCAAAC
Found at i:32082626 original size:51 final size:50
Alignment explanation
Indices: 32082478--32082663 Score: 203
Period size: 51 Copynumber: 3.7 Consensus size: 50
32082468 GTGCAAGGGA
*
32082478 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATA-GTT
* * * *** *
32082528 AGGTCGCATGTGTAATACTATGTGCAGGCTACTATACGTACCTGATAGCTT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAG-TT
* * * * * *
32082579 TGATCACGTGTGTAGTACTATGTGCAGGCTAGTACGTGTATCGGATAGTGA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGT-T
*
32082630 TGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
32082664 TGTGAACCGG
Statistics
Matches: 109, Mismatches: 24, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
50 40 0.37
51 69 0.63
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:32082682 original size:101 final size:101
Alignment explanation
Indices: 32082481--32082664 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
32082471 CAAGGGATGG
*
32082481 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAATAC
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAATAC
*
32082546 TATGTGCAGGCTACTATACGTACCTGATAGCTTTGA
66 TATGTGCAGGCTACTATACGAACCTGATAGCTTTGA
* * * * *
32082582 TCACGTGTGTAGTACTATGTGCAGGCTAGTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCACATGTGTAAT
*
32082646 ACTATGTGTAGGCTACTAT
64 ACTATGTGCAGGCTACTAT
32082665 GTGAACCGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 38 0.51
102 32 0.43
103 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAATAC
TATGTGCAGGCTACTATACGAACCTGATAGCTTTGA
Found at i:32083770 original size:49 final size:49
Alignment explanation
Indices: 32083689--32083789 Score: 141
Period size: 49 Copynumber: 2.1 Consensus size: 49
32083679 ATGAGTACTT
* * * *
32083689 TCGGTAAGTGATATGTGATTCCGTATAGGACCATAGCTGGGCTATGGCA
1 TCGGTAAGTGATATGTGATTACATATAAGACCATAGCTGGACTATGGCA
*
32083738 TCGGTACA-TGATATGTGATTACATGTAAGACCATAGCTGGACTATGGCA
1 TCGGTA-AGTGATATGTGATTACATATAAGACCATAGCTGGACTATGGCA
32083787 TCG
1 TCG
32083790 AGAAAACGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 45 0.98
50 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TCGGTAAGTGATATGTGATTACATATAAGACCATAGCTGGACTATGGCA
Found at i:32085210 original size:8 final size:8
Alignment explanation
Indices: 32085197--32085221 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32085187 TTTTAAATAA
32085197 TATTTTAT
1 TATTTTAT
32085205 TATTTTAT
1 TATTTTAT
32085213 TATTTTAT
1 TATTTTAT
32085221 T
1 T
32085222 GTTTAGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:32094816 original size:28 final size:28
Alignment explanation
Indices: 32094785--32095395 Score: 871
Period size: 28 Copynumber: 21.8 Consensus size: 28
32094775 GTAATAGTAC
32094785 AATGTGGGCCTTAGCCCAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
32094813 AATGTGGGCCTTAGCCCAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * *
32094841 ATTGTTGGCCTTAGCCTAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32094869 AATGTGGTCCTTAGCCCAATACAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
32094897 AATGTGGGCCTTAGCCCAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * *
32094925 AATGTGGGCCTTAGCGCAATGCAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * * *
32094953 AACGTGGGCCTTAGCCTAATGCAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
*
32094981 AATATGGGCCTTAGCCCAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32095009 ATTGTGGGCCTTAGCCAAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * *
32095037 AATGTAGGCCTTTGCCCAATACAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
*
32095065 AATGTGGGCCTTAGCCTAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * *
32095093 AATGTGGGCCTTAGCCCAGTGCAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32095121 AATGTGGGCCTTAGCCCAATGCAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32095149 AACGTGGCCCTTAGCCCAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32095177 ATTGTGGGCCTTAGCCAAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * *
32095205 AATGTAGGCCTTTGCCCAATACAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
*
32095233 AATGTGGGCCTTAGCCTAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* * *
32095261 AATGTGGGCCTTAGCCCAGTGCAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32095289 AATGTGGGCCTTAGCCCAATGCAGTAAC
1 AATGTGGGCCTTAGCCCAATACAGTAAT
* *
32095317 AATGTGGCCCTTAGCCCAATAAAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
32095345 AATGTGGGCCTTAGCCCAATACAGTAAT
1 AATGTGGGCCTTAGCCCAATACAGTAAT
32095373 AATGTGGGCCTTAGCCCAATACA
1 AATGTGGGCCTTAGCCCAATACA
32095396 ATATTCGTAC
Statistics
Matches: 517, Mismatches: 66, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 517 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (28 bp):
AATGTGGGCCTTAGCCCAATACAGTAAT
Found at i:32095544 original size:26 final size:26
Alignment explanation
Indices: 32095505--32095581 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 26
32095495 AACACACCAA
* *
32095505 TATCGCAGCAAAGCTGCTAGTAATAG
1 TATCACAGCAAAGCTGCTAGTAACAG
* *
32095531 TATCATAGCGAAGCTG-TCAGTAACAG
1 TATCACAGCAAAGCTGCT-AGTAACAG
* *
32095557 TATCGCAGCAAAGCTGCCAGTAACA
1 TATCACAGCAAAGCTGCTAGTAACA
32095582 ATATACTTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.02
26 40 0.98
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (26 bp):
TATCACAGCAAAGCTGCTAGTAACAG
Found at i:32095754 original size:27 final size:27
Alignment explanation
Indices: 32095724--32096092 Score: 185
Period size: 27 Copynumber: 13.7 Consensus size: 27
32095714 ATCTCCTAGG
* *
32095724 GGTATAACAGTCATTTTACCCTATAGA
1 GGTATATCGGTCATTTTACCCTATAGA
32095751 GGTA-ATTCGGTCATTTTACCCTAT-GA
1 GGTATA-TCGGTCATTTTACCCTATAGA
* *
32095777 GGGTA-ATTTGGTCATTTTACCCTATAGG
1 -GGTATA-TCGGTCATTTTACCCTATAGA
* *
32095805 GGTATTTCAGTCATTTTACCCTAT-GA
1 GGTATATCGGTCATTTTACCCTATAGA
* *
32095831 GGGTATTTTGGTCATTTTACCCTAT-GA
1 -GGTATATCGGTCATTTTACCCTATAGA
* * * *
32095858 GAGTA-ATTCAGTAATTTTATCCTAT-GG
1 G-GTATA-TCGGTCATTTTACCCTATAGA
*
32095885 GGTA-ATTCGATCATTTTACCCTAT-GA
1 GGTATA-TCGGTCATTTTACCCTATAGA
* * *
32095911 GGGTA-ATTCGGTCATTTTAGCCTATGGG
1 -GGTATA-TCGGTCATTTTACCCTATAGA
* * *
32095939 GGTA-ATTCAGTCATTTTACCTTAT-GG
1 GGTATA-TCGGTCATTTTACCCTATAGA
* *
32095965 GGTA-ATTCGGTCATTTTACCCTATGGG
1 GGTATA-TCGGTCATTTTACCCTATAGA
* * * **
32095992 GGTATTTCGGTCATTCTATCCT-GCGA
1 GGTATATCGGTCATTTTACCCTATAGA
* * *
32096018 GGGTATTTCGGTCATTTTACCCTGT-GG
1 -GGTATATCGGTCATTTTACCCTATAGA
* * *
32096045 GGATATTTTGGTCATTCTACCCTATAAGA
1 GG-TATATCGGTCATTTTACCCTAT-AGA
* * *
32096074 CG-ATTTCAGTCATTTTACC
1 GGTATATCGGTCATTTTACC
32096093 TATTTTGAGG
Statistics
Matches: 279, Mismatches: 47, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
26 52 0.19
27 223 0.80
28 2 0.01
29 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATATCGGTCATTTTACCCTATAGA
Found at i:32096046 original size:80 final size:80
Alignment explanation
Indices: 32095733--32096069 Score: 415
Period size: 80 Copynumber: 4.2 Consensus size: 80
32095723 GGGTATAACA
**
32095733 GTCATTTTACCCTAT-AGAGGTAATTCGGTCATTTTACCCTATGAGGGTAATTTGGTCATTTTAC
1 GTCATTTTACCCTATGAG-GGTAATTCGGTCATTTTACCCTATGAGGGTAATTCAGTCATTTTAC
* *
32095797 CCTATAGGGGTATTTCA
65 CCTAT-GGGGTAATTCG
* * * * *
32095814 GTCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCCTATGAGAGTAATTCAGTAATTTTATC
1 GTCATTTTACCCTATGAGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTCAGTCATTTTACC
32095879 CTATGGGGTAATTCG
66 CTATGGGGTAATTCG
* * *
32095894 ATCATTTTACCCTATGAGGGTAATTCGGTCATTTTAGCCTATGGGGGTAATTCAGTCATTTTACC
1 GTCATTTTACCCTATGAGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTCAGTCATTTTACC
*
32095959 TTATGGGGTAATTCG
66 CTATGGGGTAATTCG
* * * * ** * *
32095974 GTCATTTTACCCTATGGGGGTATTTCGGTCATTCTATCCTGCGAGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCCTATGAGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTCAGTCATTTTACC
* * *
32096039 CTGTGGGGATATTTTG
66 CTATGGGG-TAATTCG
*
32096055 GTCATTCTACCCTAT
1 GTCATTTTACCCTAT
32096070 AAGACGATTT
Statistics
Matches: 221, Mismatches: 33, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
80 141 0.64
81 78 0.35
82 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (80 bp):
GTCATTTTACCCTATGAGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTCAGTCATTTTACC
CTATGGGGTAATTCG
Found at i:32096080 original size:54 final size:54
Alignment explanation
Indices: 32095733--32096092 Score: 376
Period size: 54 Copynumber: 6.7 Consensus size: 54
32095723 GGGTATAACA
*
32095733 GTCATTTTACCCTAT-AGAGGTAATTCGGTCATTTTACCCTATGAGGGTAATTTG
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTATG-GGGTAATTCG
* * * * *
32095787 GTCATTTTACCCTAT-AGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTATG-GGGTAATTCG
* * *
32095841 GTCATTTTACCCTATGAGA-GTAATTCAGTAATTTTATCCTATGGGGTAATTCG
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTATGGGGTAATTCG
* * *
32095894 ATCATTTTACCCTATGAG-GGTAATTCGGTCATTTTAGCCTATGGGGGTAATTCA
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTAT-GGGGTAATTCG
* *
32095948 GTCATTTTACCTTATG-G-GGTAATTCGGTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTAT-GGGGTAATTCG
* * ** * * * *
32096001 GTCATTCTATCCTGCGAG-GGTATTTCGGTCATTTTACCCTGTGGGGATATTTTG
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTATGGGG-TAATTCG
* * * * *
32096055 GTCATTCTACCCTATAAGACG-ATTTCAGTCATTTTACC
1 GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACC
32096093 TATTTTGAGG
Statistics
Matches: 266, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
53 94 0.35
54 169 0.64
55 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.40
Consensus pattern (54 bp):
GTCATTTTACCCTATGAGAGGTAATTCGGTCATTTTACCCTATGGGGTAATTCG
Found at i:32097902 original size:23 final size:23
Alignment explanation
Indices: 32097874--32097918 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
32097864 TTCATATAAA
*
32097874 CATTTAATACCAAATATTCATCC
1 CATTTAATACCAAATATACATCC
*
32097897 CATTTAATACCAACTATACATC
1 CATTTAATACCAAATATACATC
32097919 AACACTCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (23 bp):
CATTTAATACCAAATATACATCC
Found at i:32108210 original size:21 final size:21
Alignment explanation
Indices: 32108161--32108229 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
32108151 TCGAAAAATG
*
32108161 GAAGTTGATGCTGCAGAAGAA
1 GAAGTTGTTGCTGCAGAAGAA
*
32108182 GAAGTTGTTGCTGCAGAATAA
1 GAAGTTGTTGCTGCAGAAGAA
** **
32108203 GAAGTTGTCACTAAAGAAGAA
1 GAAGTTGTTGCTGCAGAAGAA
32108224 GAAGTT
1 GAAGTT
32108230 ACTGAAAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.39, C:0.09, G:0.29, T:0.23
Consensus pattern (21 bp):
GAAGTTGTTGCTGCAGAAGAA
Found at i:32110907 original size:22 final size:22
Alignment explanation
Indices: 32110882--32110949 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
32110872 TAGGCATCAA
*
32110882 AGTGTGAATCAGTAGGCACTGT
1 AGTGAGAATCAGTAGGCACTGT
* * * *
32110904 AGTGAAAATAAGTATGCACTAT
1 AGTGAGAATCAGTAGGCACTGT
* * *
32110926 ATTGCGAACCAGTAGGCACTGT
1 AGTGAGAATCAGTAGGCACTGT
32110948 AG
1 AG
32110950 CGCAAACCCC
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (22 bp):
AGTGAGAATCAGTAGGCACTGT
Found at i:32110957 original size:22 final size:22
Alignment explanation
Indices: 32110891--32110957 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
32110881 AAGTGTGAAT
* *
32110891 CAGTAGGCACTGTAGTGAAAAT
1 CAGTAGGCACTGTAGTGCAAAC
* * * * *
32110913 AAGTATGCACTATATTGCGAAC
1 CAGTAGGCACTGTAGTGCAAAC
*
32110935 CAGTAGGCACTGTAGCGCAAAC
1 CAGTAGGCACTGTAGTGCAAAC
32110957 C
1 C
32110958 CCGTACAAGC
Statistics
Matches: 32, Mismatches: 13, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (22 bp):
CAGTAGGCACTGTAGTGCAAAC
Found at i:32111426 original size:60 final size:60
Alignment explanation
Indices: 32111313--32111426 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
32111303 AAGGTGGAAG
* * *
32111313 TACTAGCAATTAATCTGCATCACTGGTGGCTTGTCCATATTACTGCCATCTTGTTTGCAT
1 TACTAGCAATTAATCTGCATCACTGGTAGCTTGTCCACATTACTGCCAGCTTGTTTGCAT
* * * * **
32111373 TACTAGCAGTTTATCTGCATTACTGGTAGCTTGTCTACATTACTGGTAGCTTGT
1 TACTAGCAATTAATCTGCATCACTGGTAGCTTGTCCACATTACTGCCAGCTTGT
32111427 CAGCATTAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 45 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (60 bp):
TACTAGCAATTAATCTGCATCACTGGTAGCTTGTCCACATTACTGCCAGCTTGTTTGCAT
Found at i:32111433 original size:20 final size:21
Alignment explanation
Indices: 32111389--32111434 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
32111379 CAGTTTATCT
32111389 GCATTACTGGTAGCTTGTCTA
1 GCATTACTGGTAGCTTGTCTA
32111410 -CATTACTGGTAGCTTGTC-A
1 GCATTACTGGTAGCTTGTCTA
32111429 GCATTA
1 GCATTA
32111435 ATGGAAGTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (21 bp):
GCATTACTGGTAGCTTGTCTA
Found at i:32118306 original size:23 final size:21
Alignment explanation
Indices: 32118280--32118326 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
32118270 GCTTATACAT
32118280 ACCAAAACACCATTAACAAATGC
1 ACCAAAACACCATT-ACAAAT-C
* *
32118303 ACCATAATACCATTACAAATC
1 ACCAAAACACCATTACAAATC
32118324 ACC
1 ACC
32118327 CTATACATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
23 12 0.55
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.17
Consensus pattern (21 bp):
ACCAAAACACCATTACAAATC
Found at i:32121392 original size:25 final size:25
Alignment explanation
Indices: 32121348--32121411 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
32121338 CATGTCTACT
*
32121348 CACACGAGTTGT-AATTAGAATGCA
1 CACACGAGCTGTGAATTAGAATGCA
* *
32121372 CACACGAGCTGTGAATTAGAATTCT
1 CACACGAGCTGTGAATTAGAATGCA
* *
32121397 CATATGAGCTGTGAA
1 CACACGAGCTGTGAA
32121412 AAATAGGCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 11 0.32
25 23 0.68
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (25 bp):
CACACGAGCTGTGAATTAGAATGCA
Found at i:32134794 original size:50 final size:50
Alignment explanation
Indices: 32134737--32135198 Score: 300
Period size: 50 Copynumber: 9.2 Consensus size: 50
32134727 GATGTAGTGG
* * *
32134737 AACAGATTGAAGCTACGATGACGGATCTTGTTTCCCCGACATTGCAGTTA
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * * * * * ** * **
32134787 AATAGATTGAACCCACAACGCCGAATCTTACTTT-CCTGGCGGTGTAGTGG
1 AACAGATTGAAGCTACGACGGCGAATCTT-GTTTCCCCGACATTGCAGTTA
* * * *
32134837 AACAGATTAAAGGTACGATGACGAATCTTGTTTCCCCGACATTGCAGTTA
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * ** * * * **
32134887 AATAGATTGAAGCCACAACGGTGAATCTTACTT-CCCTA-GTGGTGTAGTGG
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACAT--TGCAGTTA
*
32134937 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGATATTGCAGTTA
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * ** * * * * **
32134987 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAGTGG
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * *
32135037 AACAGATTGAAGCTACGACGGTGAATCTTGTTTCCCCAACATTGAAGTTA
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * ** * ** * *** ***
32135087 AATAGATTAAAGCTACAATAGCAAATCTTACTTCCCTGATGGTGCAGAGG
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* *
32135137 AACAGATTGAAGCTACGATGGCGAATCTTGTTTCCCCGACATTACAGTTA
1 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
32135187 AACAGATTGAAG
1 AACAGATTGAAG
32135199 ATGGCGAATC
Statistics
Matches: 291, Mismatches: 115, Indels: 12
0.70 0.28 0.03
Matches are distributed among these distances:
48 1 0.00
49 7 0.02
50 275 0.95
51 7 0.02
52 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (50 bp):
AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:32134817 original size:100 final size:100
Alignment explanation
Indices: 32134687--32135198 Score: 718
Period size: 100 Copynumber: 5.1 Consensus size: 100
32134677 ATTACAGTGC
* * * *
32134687 AATAGATTGAAGCCACAATGGCGATTCTTACTTCCTTGGCGATGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* *
32134752 CGATGACGGATCTTGTTTCCCCGACATTGCAGTTA
66 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * *
32134787 AATAGATTGAACCCACAACGCCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTAAAGGTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
32134852 CGATGACGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * *
32134887 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGTGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* *
32134952 CGACGGCGAATCTTGTTTCCCCGATATTGCAGTTA
66 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* *
32134987 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* * * *
32135052 CGACGGTGAATCTTGTTTCCCCAACATTGAAGTTA
66 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * ** * ** * *
32135087 AATAGATTAAAGCTACAATAGCAAATCTTACTTCCCTGATGGTGCAGAGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
32135152 CGATGGCGAATCTTGTTTCCCCGACATTACAGTTA
66 CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
*
32135187 AACAGATTGAAG
1 AATAGATTGAAG
32135199 ATGGCGAATC
Statistics
Matches: 366, Mismatches: 46, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 366 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
CGATGGCGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:32135878 original size:9 final size:9
Alignment explanation
Indices: 32135861--32135903 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
32135851 GCCTAAAACA
*
32135861 CCAAGTGGC
1 CCAAATGGC
32135870 CCAAATGGC
1 CCAAATGGC
*
32135879 CCAAATGTAAC
1 CCAAATG--GC
32135890 CCAAATGGC
1 CCAAATGGC
32135899 CCAAA
1 CCAAA
32135904 CAGAAACCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 21 0.72
11 8 0.28
ACGTcount: A:0.37, C:0.33, G:0.19, T:0.12
Consensus pattern (9 bp):
CCAAATGGC
Found at i:32138782 original size:74 final size:77
Alignment explanation
Indices: 32138694--32138838 Score: 215
Period size: 74 Copynumber: 1.9 Consensus size: 77
32138684 ATATCCGGAC
32138694 TAAGATCCGAAGGCATTTGTGCGAGATACT-AATCCGGACTAAG-CCGAAGGCA-TTGTGCGAGA
1 TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGCCCGAAGGCATTTGTGCGAGA
32138756 TACTAAATCCGG
66 TACTAAATCCGG
* * **
32138768 TAAGATTCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAG-CCCGAAGGCATTTGTGCGAG
*
32138833 TTACTA
65 ATACTA
32138839 TAACCGGGCT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
74 28 0.45
75 11 0.18
77 9 0.15
78 14 0.23
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (77 bp):
TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGCCCGAAGGCATTTGTGCGAGA
TACTAAATCCGG
Found at i:32138830 original size:40 final size:39
Alignment explanation
Indices: 32138647--32138866 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
32138637 TTGAATGATG
* * * *
32138647 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
32138687 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32138726 TCCGGACTAAG-CCGAAGGCA-TTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
32138763 TCC-GG-TAAGATTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
32138801 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
32138842 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
32138867 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 12, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
35 4 0.03
36 15 0.09
37 22 0.14
38 19 0.12
39 15 0.09
40 73 0.46
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32146753 original size:80 final size:81
Alignment explanation
Indices: 32146620--32146845 Score: 268
Period size: 80 Copynumber: 2.8 Consensus size: 81
32146610 TTGAATGATG
* * * **
32146620 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCGT-ATCCGGACTAAGATCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAATCCGGACTAAGATCCGAAGGCAT
32146683 TTGTGCAAGATACTAAA
65 TTGTGCAAGATACTAAA
32146700 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-AATCCGGACTAAGATCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATAATCCGGACTAAGATCCGAAGGCA
* *
32146762 TTTGTGCGAGTTACTAAA
64 TTTGTGCAAGATACTAAA
** * *
32146780 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAATCCGGACTAAGAT-CCGAAGGCAT
32146843 TTG
65 TTG
32146846 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
79 3 0.02
80 112 0.88
81 11 0.09
82 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGATACTAAA
Found at i:32146809 original size:40 final size:40
Alignment explanation
Indices: 32146659--32146845 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
32146649 AAGTGACCGT
* *
32146659 ATCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
*
32146699 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
32146739 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
** *
32146779 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAATTACTATA
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
* *
32146820 A-CCGGGCTATG-TCCCGAAGGCATTTG
1 ATCCGGACTAAGAT-CCGAAGGCATTTG
32146846 AACGAGGAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.98
41 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:32146863 original size:80 final size:79
Alignment explanation
Indices: 32146659--32146878 Score: 218
Period size: 80 Copynumber: 2.8 Consensus size: 79
32146649 AAGTGACCGT
** * *
32146659 ATCCGGACTAAGATCCGAAGGCATTTGTGCAAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCA
1 ATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TGACTAAATCCGG-TTAA-ATCCCGAAGGCA
32146722 TTTGTGCGAGATACTAA
63 TTTGTGCGAGATACTAA
** * *
32146739 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGACTAAGATCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATT
32146804 TGTGCGA-ATTACTATA
65 TGTGCGAGA-TACTA-A
* * * *
32146820 A-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
32146879 TACGTGATTT
Statistics
Matches: 122, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
79 19 0.16
80 99 0.81
81 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (79 bp):
ATCCGGACTAAGATCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:32150380 original size:13 final size:12
Alignment explanation
Indices: 32150363--32150407 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 12
32150353 TGAGTCGTAA
32150363 AAAAATGAAATG
1 AAAAATGAAATG
32150375 -AAAA--AAATG
1 AAAAATGAAATG
32150384 AAAAAATGAAAATG
1 -AAAAATG-AAATG
32150398 AAAAATGAAA
1 AAAAATGAAA
32150408 AATGGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
9 5 0.18
11 8 0.29
12 3 0.11
13 7 0.25
14 5 0.18
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (12 bp):
AAAAATGAAATG
Found at i:32150389 original size:8 final size:8
Alignment explanation
Indices: 32150370--32150409 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
32150360 TAAAAAAATG
32150370 AAATGAAAA
1 AAATG-AAA
32150379 AAATGAAA
1 AAATGAAA
32150387 AAATG--A
1 AAATGAAA
32150393 AAATG-AA
1 AAATGAAA
32150400 AAATGAAA
1 AAATGAAA
32150408 AA
1 AA
32150410 TGGAAAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.21
7 6 0.21
8 12 0.41
9 5 0.17
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAATGAAA
Found at i:32150395 original size:7 final size:7
Alignment explanation
Indices: 32150377--32150417 Score: 57
Period size: 8 Copynumber: 5.7 Consensus size: 7
32150367 ATGAAATGAA
32150377 AAAAATG
1 AAAAATG
32150384 AAAAAATG
1 -AAAAATG
32150392 -AAAATG
1 AAAAATG
32150398 AAAAATG
1 AAAAATG
32150405 AAAAATGG
1 AAAAAT-G
32150413 AAAAA
1 AAAAA
32150418 GTAAAATTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.19
7 12 0.39
8 13 0.42
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:32150395 original size:14 final size:13
Alignment explanation
Indices: 32150378--32150408 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
32150368 TGAAATGAAA
32150378 AAAATGAAAAAATG
1 AAAATG-AAAAATG
32150392 AAAATGAAAAATG
1 AAAATGAAAAATG
32150405 AAAA
1 AAAA
32150409 ATGGAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:32150409 original size:14 final size:14
Alignment explanation
Indices: 32150377--32150417 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
32150367 ATGAAATGAA
32150377 AAAAATGAAAAAATG
1 AAAAATG-AAAAATG
32150392 -AAAATGAAAAATG
1 AAAAATGAAAAATG
32150405 AAAAATGGAAAAA
1 AAAAAT-GAAAAA
32150418 GTAAAATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.29
14 11 0.46
15 6 0.25
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:32150416 original size:21 final size:21
Alignment explanation
Indices: 32150362--32150409 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 21
32150352 TTGAGTCGTA
32150362 AAAAAATG-AAATGAAAAAAATG
1 AAAAAATGAAAATG--AAAAATG
32150384 AAAAAATGAAAATGAAAAATG
1 AAAAAATGAAAATGAAAAATG
32150405 AAAAA
1 AAAAA
32150410 TGGAAAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 12 0.48
22 8 0.32
23 5 0.20
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (21 bp):
AAAAAATGAAAATGAAAAATG
Found at i:32150423 original size:21 final size:21
Alignment explanation
Indices: 32150362--32150424 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
32150352 TTGAGTCGTA
32150362 AAAAAATGAAATGAA-AAAAATG
1 AAAAAATGAAA--AAGAAAAATG
*
32150384 AAAAAATGAAAATGAAAAATG
1 AAAAAATGAAAAAGAAAAATG
*
32150405 -AAAAATGGAAAAAGTAAAAT
1 AAAAAAT-GAAAAAGAAAAAT
32150425 TGGAAAGGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.19
21 18 0.50
22 11 0.31
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AAAAAATGAAAAAGAAAAATG
Found at i:32151960 original size:50 final size:50
Alignment explanation
Indices: 32151906--32152607 Score: 323
Period size: 50 Copynumber: 13.9 Consensus size: 50
32151896 CCTATCTCTT
* *
32151906 TGGCATTACAGTGGAATAGATTGAAGGCACAACGGCGAATCTTACTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* * * * * * * * **
32151956 TGGCAATGTAGTGGGACAGATTGAAGCTACGACGGCGGATCATGTTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
*** * ** * **
32152006 CAACATTGCATTTAAATAGATTGAAGCCATAACGATGAATCTTACTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* * * * * **
32152056 TAGCGA-TGTAGTGGAATAGATT-AAACCTACGACGAC-AGATCTTGTTTCCC
1 TGGC-ATTGCAGTGGAATAGATTGAAGCC-ACAACGGCGA-ATCTTACTTCCC
* * * ** *
32152106 CGACATTACAGTTAAATAGATTGAAGCCACAACGGTGAATCTTACTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* * * * *** **
32152156 TGGCAGTGTAGTGGAACAGATTGAAGCTATGGCGGCGAATCTTGTTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* * ** * * *
32152206 CGACATTGCAGTTAAATAGATTGAACCCACAATGGTGAATCTTACATCCCTTACATCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTT--A---C-T---TCCC
* ** * ** * * **
32152265 TGGCAGTGTGGTGGAACAGATTGAAGCTGCGACGACGAATCTTGTTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* * ** * *
32152315 CGACATTGCAGTTAAATAGATTGAACCCACAACGGTGAATCTTACTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
** * * * * * **
32152365 TGGCGGTGTAGTGGAACAGATTAAAGCTACGACGGCGAATCTTGTTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* ** *
32152415 TGACATTGCAGTTAAATAGATTGGAGCCACAACGGCGAATCTTACTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
*** * * * * * **
32152465 TGGTGGTGTAATGGAACAGATTGAAGCTACGACGGCGAATCTTTTTTCCC
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
* * * * * ** *
32152515 CGACATTGAAGT-TAAGTAGATTGAAGCTACAATAGCAAATCTTACTTCCC
1 TGGCATTGCAGTGGAA-TAGATTGAAGCCACAACGGCGAATCTTACTTCCC
** * ** * *
32152565 TGGCGGTGCAGAGGACCAGATTGAAGCTACGACGGCGAATCTT
1 TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTT
32152608 GTTTCCCCGA
Statistics
Matches: 445, Mismatches: 190, Indels: 34
0.67 0.28 0.05
Matches are distributed among these distances:
49 8 0.02
50 396 0.89
51 7 0.02
53 1 0.00
56 1 0.00
59 32 0.07
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (50 bp):
TGGCATTGCAGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCC
Found at i:32152047 original size:100 final size:100
Alignment explanation
Indices: 32151920--32152640 Score: 922
Period size: 100 Copynumber: 7.1 Consensus size: 100
32151910 ATTACAGTGG
* * ** *
32151920 AATAGATTGAAGGCACAACGGCGAATCTTACTTCCCTGGCAATGTAGTGGGACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* * * *
32151985 CGACGGCGGATCATGTTTCCCCAACATTGCATTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * * * * *
32152020 AATAGATTGAAGCCATAACGATGAATCTTACTTCCCTAGCGATGTAGTGGAATAGATTAAACCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* *
32152085 CGACGAC-AGATCTTGTTTCCCCGACATTACAGTTA
66 CGACGGCGA-ATCTTGTTTCCCCGACATTGCAGTTA
*
32152120 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* *
32152185 TGGCGGCGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * *
32152220 AATAGATTGAACCCACAATGGTGAATCTTACATCCCTTACATCCCTGGCAGTGTGGTGGAACAGA
1 AATAGATTGAAGCCACAACGGTGAATCTT--A---C-T---TCCCTGGCGGTGTAGTGGAACAGA
* *
32152285 TTGAAGCTGCGACGACGAATCTTGTTTCCCCGACATTGCAGTTA
57 TTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* *
32152329 AATAGATTGAACCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
32152394 CGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * * *
32152429 AATAGATTGGAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGTAATGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
* *
32152494 CGACGGCGAATCTTTTTTCCCCGACATTGAAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * ** ** * * *
32152529 AGTAGATTGAAGCTACAATAGCAAATCTTACTTCCCTGGCGGTGCAGAGGACCAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
32152594 CGACGGCGAATCTTGTTTCCCCGACATTGTAGTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
*
32152629 AACAGATTGAAG
1 AATAGATTGAAG
32152641 ATGGTGAATC
Statistics
Matches: 544, Mismatches: 66, Indels: 22
0.86 0.10 0.03
Matches are distributed among these distances:
100 446 0.82
101 1 0.00
102 1 0.00
103 1 0.00
104 1 0.00
105 1 0.00
106 1 0.00
107 1 0.00
109 91 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:32152515 original size:309 final size:300
Alignment explanation
Indices: 32151920--32152639 Score: 938
Period size: 309 Copynumber: 2.4 Consensus size: 300
32151910 ATTACAGTGG
** ** * * *
32151920 AATAGATTGAAGGCACAACGGCGAATCTTACTTCCCTGGCAATGTAGTGGGACAGATTGAAGCTA
1 AATAGATTGAACCCACAATAGCAAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTA
* * * * * *
32151985 CGACGGCGGATCATGTTTCCCCAACATTGCATTTAAATAGATTGAAGCCATAACGATGAATCTTA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAACCCACAACGATGAATCTTA
*
32152050 CTTCCCTAGCGATGTAGTGGAATAGATTAAACCTACGACGACAGATCTTGTTTCCCCGACATTAC
131 CTTCCCTAGCGATGTAGTGGAACAGATTAAACCTACGACGACAGATCTTGTTTCCCCGACATTAC
* *
32152115 AGTTAAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGA
196 AGTTAAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAATGGAACAGATTGA
* * *
32152180 AGCTATGGCGGCGAATCTTGTTTCCCCGACATTGCAGTTA
261 AGCTACGACGGCGAATCTTGTTTCCCCGACATTGAAGTTA
* * * *
32152220 AATAGATTGAACCCACAATGGTGAATCTTACATCCCTTACATCCCTGGCAGTGTGGTGGAACAGA
1 AATAGATTGAACCCACAA---T--AGC--AAAT--CTTACTTCCCTGGCAGTGTAGTGGAACAGA
* * *
32152285 TTGAAGCTGCGACGACGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAACCCACAACGG
57 TTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAACCCACAACGA
* * * *
32152350 TGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGACGGC-GAATCTTGTTTCC
122 TGAATCTTACTTCCCTAGCGATGTAGTGGAACAGATTAAACCTACGACGACAG-ATCTTGTTTCC
* * * **
32152414 CTGACATTGCAGTTAAATAGATTGGAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGTAATGG
186 CCGACATTACAGTTAAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAATGG
*
32152479 AACAGATTGAAGCTACGACGGCGAATCTTTTTTCCCCGACATTGAAGTTA
251 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGAAGTTA
* * * * * * *
32152529 AGTAGATTGAAGCTACAATAGCAAATCTTACTTCCCTGGCGGTGCAGAGGACCAGATTGAAGCTA
1 AATAGATTGAACCCACAATAGCAAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTA
* *
32152594 CGACGGCGAATCTTGTTTCCCCGACATTGTAGTTAAACAGATTGAA
66 CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAA
32152640 GATGGTGAAT
Statistics
Matches: 359, Mismatches: 51, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
300 91 0.25
302 3 0.01
304 2 0.01
305 1 0.00
306 1 0.00
307 2 0.01
308 1 0.00
309 258 0.72
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (300 bp):
AATAGATTGAACCCACAATAGCAAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTA
CGACGGCGAATCTTGTTTCCCCGACATTGCAGTTAAATAGATTGAACCCACAACGATGAATCTTA
CTTCCCTAGCGATGTAGTGGAACAGATTAAACCTACGACGACAGATCTTGTTTCCCCGACATTAC
AGTTAAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGTAATGGAACAGATTGA
AGCTACGACGGCGAATCTTGTTTCCCCGACATTGAAGTTA
Found at i:32161017 original size:8 final size:8
Alignment explanation
Indices: 32161004--32161054 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
32160994 TAATCTCTTT
32161004 ATTTTAAA
1 ATTTTAAA
32161012 ATTTTAAA
1 ATTTTAAA
*
32161020 ATTTCAAA
1 ATTTTAAA
32161028 ATTTTAAA
1 ATTTTAAA
*
32161036 ATTGTAAA
1 ATTTTAAA
*
32161044 ATTGTAAA
1 ATTTTAAA
32161052 ATT
1 ATT
32161055 GTAGTACAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 40 1.00
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (8 bp):
ATTTTAAA
Found at i:32164028 original size:12 final size:12
Alignment explanation
Indices: 32164011--32164037 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32164001 GTATGGTCCA
32164011 ATATTTTTTCAT
1 ATATTTTTTCAT
32164023 ATATTTTTTCAT
1 ATATTTTTTCAT
32164035 ATA
1 ATA
32164038 ATCAGATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTTTTTCAT
Found at i:32187104 original size:31 final size:31
Alignment explanation
Indices: 32187069--32187133 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
32187059 GAAATAGATA
32187069 CATGTGGC-AAATGGAATAATTTTTGAGCAAG
1 CATGTGGCAAAAT-GAATAATTTTTGAGCAAG
*
32187100 CATGTGGCAAAATGAATAATTTTTTAGCAAG
1 CATGTGGCAAAATGAATAATTTTTGAGCAAG
32187131 CAT
1 CAT
32187134 AATCAAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.88
32 4 0.12
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.31
Consensus pattern (31 bp):
CATGTGGCAAAATGAATAATTTTTGAGCAAG
Found at i:32190144 original size:23 final size:23
Alignment explanation
Indices: 32190111--32190157 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
32190101 TTTGTTTAAG
* *
32190111 TTAAACGAACATATTCGTGAACA
1 TTAAACAAACATATTCATGAACA
*
32190134 TTAAACAAACATGTTCATGAACA
1 TTAAACAAACATATTCATGAACA
32190157 T
1 T
32190158 ATAATTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.28
Consensus pattern (23 bp):
TTAAACAAACATATTCATGAACA
Found at i:32203750 original size:14 final size:14
Alignment explanation
Indices: 32203733--32203768 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
32203723 AAAAATATAC
32203733 ACATGAATAAATTA
1 ACATGAATAAATTA
32203747 ACATGAATAAATTA
1 ACATGAATAAATTA
32203761 ACATGAAT
1 ACATGAAT
32203769 TAATATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (14 bp):
ACATGAATAAATTA
Found at i:32207146 original size:14 final size:15
Alignment explanation
Indices: 32207127--32207159 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
32207117 CTATGCATGA
32207127 ATGTGGGTAAGA-CC
1 ATGTGGGTAAGACCC
*
32207141 ATGTGGTTAAGACCC
1 ATGTGGGTAAGACCC
32207156 ATGT
1 ATGT
32207160 CATGATGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (15 bp):
ATGTGGGTAAGACCC
Found at i:32217775 original size:27 final size:27
Alignment explanation
Indices: 32217745--32217799 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
32217735 GAACTTTAAG
32217745 TTCAACAACTTCAAAACCCTATATACA
1 TTCAACAACTTCAAAACCCTATATACA
32217772 TTCAACAACTTCAAAACCCTATATACA
1 TTCAACAACTTCAAAACCCTATATACA
32217799 T
1 T
32217800 GCCACAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (27 bp):
TTCAACAACTTCAAAACCCTATATACA
Found at i:32217806 original size:27 final size:27
Alignment explanation
Indices: 32217747--32217806 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
32217737 ACTTTAAGTT
*
32217747 CAACAACTTCAAAACCCTATATACATT
1 CAACAACTTCAAAACCCTATATACATG
32217774 CAACAACTTCAAAACCCTATATACATG
1 CAACAACTTCAAAACCCTATATACATG
*
32217801 CCACAA
1 CAACAA
32217807 AACCGAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.22
Consensus pattern (27 bp):
CAACAACTTCAAAACCCTATATACATG
Found at i:32218892 original size:25 final size:25
Alignment explanation
Indices: 32218864--32218914 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32218854 ATCAAGTGGG
32218864 GGTTCTTCAGTTCGAAAACACTACA
1 GGTTCTTCAGTTCGAAAACACTACA
32218889 GGTTCTTCAGTTCGAAAACACTACA
1 GGTTCTTCAGTTCGAAAACACTACA
32218914 G
1 G
32218915 CCTCCTCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (25 bp):
GGTTCTTCAGTTCGAAAACACTACA
Found at i:32233657 original size:33 final size:34
Alignment explanation
Indices: 32233598--32233676 Score: 81
Period size: 33 Copynumber: 2.4 Consensus size: 34
32233588 TGCCAAGTCA
* * * * *
32233598 TGTGGG-CCACATGGGCAAGGCTATTTTGGGCTG
1 TGTGGGCCCACACGAGCAAGGCCATTTTAGGCCG
32233631 TGTGGGCCCACACGAGCAA-GCCATTTTAGGCCG
1 TGTGGGCCCACACGAGCAAGGCCATTTTAGGCCG
*
32233664 TATGGGCCACACA
1 TGTGGGCC-CACA
32233677 AGTGTGTGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 24 0.63
34 14 0.37
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.22
Consensus pattern (34 bp):
TGTGGGCCCACACGAGCAAGGCCATTTTAGGCCG
Found at i:32235548 original size:20 final size:20
Alignment explanation
Indices: 32235511--32235549 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32235501 TAAAAAGATA
* *
32235511 TATAATTATTCATCTAATAC
1 TATAACTATTCAACTAATAC
*
32235531 TATAACTATTCAAGTAATA
1 TATAACTATTCAACTAATA
32235550 TTGTTTGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (20 bp):
TATAACTATTCAACTAATAC
Found at i:32241872 original size:27 final size:27
Alignment explanation
Indices: 32241842--32241942 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 27
32241832 TCCAAAGTTG
*
32241842 TATGTAAGTTATGGTATGATATATATT
1 TATGTAAGTTATGATATGATATATATT
* *
32241869 TATGGAAGTTATAATATGATACATATTTATGT
1 TATGTAAGTTATGATATGAT--ATA--TAT-T
32241901 ATCATGTAAGTTATGATATGATATATATT
1 -T-ATGTAAGTTATGATATGATATATATT
32241930 TATGTAAGTTATG
1 TATGTAAGTTATG
32241943 TAAATTGATT
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
27 29 0.47
28 1 0.02
29 4 0.06
30 3 0.05
31 3 0.05
32 4 0.06
33 1 0.02
34 17 0.27
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.46
Consensus pattern (27 bp):
TATGTAAGTTATGATATGATATATATT
Found at i:32242194 original size:14 final size:14
Alignment explanation
Indices: 32242177--32242226 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
32242167 TAGCTAAATT
32242177 TAAAATTATAAAAA
1 TAAAATTATAAAAA
**
32242191 TAAAAAAATAAAAAA
1 TAAAATTAT-AAAAA
*
32242206 TAAAATGATAAAAA
1 TAAAATTATAAAAA
*
32242220 TATAATT
1 TAAAATT
32242227 TAACAGAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAAATTATAAAAA
Found at i:32242204 original size:15 final size:15
Alignment explanation
Indices: 32242186--32242224 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
32242176 TTAAAATTAT
32242186 AAAAATAAAAAAATA
1 AAAAATAAAAAAATA
**
32242201 AAAAATAAAATGATA
1 AAAAATAAAAAAATA
32242216 AAAATATAA
1 AAAA-ATAA
32242225 TTTAACAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAAATAAAAAAATA
Found at i:32242219 original size:9 final size:8
Alignment explanation
Indices: 32242172--32242224 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
32242162 TATTTTAGCT
*
32242172 AAATTTAA
1 AAATATAA
*
32242180 AATTATAA
1 AAATATAA
32242188 AAATA-AA
1 AAATATAA
32242195 AAA-ATAA
1 AAATATAA
32242202 AAA-AT-A
1 AAATATAA
32242208 AAATGATAA
1 AAAT-ATAA
32242217 AAATATAA
1 AAATATAA
32242225 TTTAACAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
6 5 0.13
7 12 0.32
8 16 0.42
9 5 0.13
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (8 bp):
AAATATAA
Found at i:32242659 original size:37 final size:37
Alignment explanation
Indices: 32242616--32242745 Score: 113
Period size: 36 Copynumber: 3.5 Consensus size: 37
32242606 CCACCTTCAT
** *
32242616 CCGATTTGCTTCCTTGTTTCATTGCTTTTCTTTTCTG
1 CCGATTTGCTTCCCAGTTTCATTTCTTTTCTTTTCTG
* **
32242653 CCGATTTG-GTCCCAGTTT-ATTTTCTTGCCTTTTCTG
1 CCGATTTGCTTCCCAGTTTCA-TTTCTTTTCTTTTCTG
* * * * *
32242689 CCGATTTGCTCCCCCGATTCTTTTCTTTTCTATTTCGG
1 CCGATTTGCTTCCCAGTTTCATTTCTTTTCT-TTTCTG
*
32242727 CCGATTTGC-TCACAGTTTC
1 CCGATTTGCTTCCCAGTTTC
32242746 TGCCGATTTG
Statistics
Matches: 71, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
35 1 0.01
36 28 0.39
37 28 0.39
38 14 0.20
ACGTcount: A:0.08, C:0.28, G:0.15, T:0.49
Consensus pattern (37 bp):
CCGATTTGCTTCCCAGTTTCATTTCTTTTCTTTTCTG
Found at i:32242732 original size:38 final size:37
Alignment explanation
Indices: 32242640--32242737 Score: 117
Period size: 36 Copynumber: 2.6 Consensus size: 37
32242630 TGTTTCATTG
* *
32242640 CTTTTCTTTTCTGCCGATTTGGT-CCCAGTTTATTTT
1 CTTTTCTTTTCTGCCGATTTGCTCCCCAGATTATTTT
** * *
32242676 CTTGCCTTTTCTGCCGATTTGCTCCCCCGATTCTTTT
1 CTTTTCTTTTCTGCCGATTTGCTCCCCAGATTATTTT
*
32242713 CTTTTCTATTTCGGCCGATTTGCTC
1 CTTTTCT-TTTCTGCCGATTTGCTC
32242738 ACAGTTTCTG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
36 20 0.39
37 15 0.29
38 16 0.31
ACGTcount: A:0.07, C:0.29, G:0.14, T:0.50
Consensus pattern (37 bp):
CTTTTCTTTTCTGCCGATTTGCTCCCCAGATTATTTT
Found at i:32245056 original size:37 final size:37
Alignment explanation
Indices: 32245013--32245101 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 37
32245003 ATCATAAATA
32245013 AATAAACTAATCAATGTTCA-AACTTTGAACATGCTTT
1 AATAAACTAATCAATG-TCAGAACTTTGAACATGCTTT
* * *
32245050 ATTAAACTAATCAATGTGAGGACTTTGAACATGCTTT
1 AATAAACTAATCAATGTCAGAACTTTGAACATGCTTT
*
32245087 AATGAACTAATCAAT
1 AATAAACTAATCAAT
32245102 ATATTTATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 2 0.04
37 44 0.96
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (37 bp):
AATAAACTAATCAATGTCAGAACTTTGAACATGCTTT
Found at i:32245267 original size:33 final size:33
Alignment explanation
Indices: 32245159--32245274 Score: 171
Period size: 33 Copynumber: 3.5 Consensus size: 33
32245149 CAATGTATAC
*
32245159 TTAGATCAATTATACATACACCAACAATTAATT
1 TTAGGTCAATTATACATACACCAACAATTAATT
* * * *
32245192 TTAGGGT-AAATAAAAATAAACCAACAATTAATT
1 TTA-GGTCAATTATACATACACCAACAATTAATT
32245225 TTAGGTCAATTATACATACACCAACAATTAATT
1 TTAGGTCAATTATACATACACCAACAATTAATT
32245258 TTAGGTCAATTATACAT
1 TTAGGTCAATTATACAT
32245275 GCTTTATAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
32 3 0.04
33 67 0.93
34 2 0.03
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.33
Consensus pattern (33 bp):
TTAGGTCAATTATACATACACCAACAATTAATT
Found at i:32248413 original size:47 final size:48
Alignment explanation
Indices: 32248331--32248422 Score: 159
Period size: 47 Copynumber: 1.9 Consensus size: 48
32248321 TTGATTTTAG
* *
32248331 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATA
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATA
32248379 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATT
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATT
32248423 TAATATTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
47 26 0.62
48 16 0.38
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (48 bp):
TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATA
Found at i:32248670 original size:15 final size:15
Alignment explanation
Indices: 32248638--32248686 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
32248628 AAGAATTTTA
32248638 TTAATTAT-ATAT-T
1 TTAATTATAATATAT
32248651 TTAATTATAATATAT
1 TTAATTATAATATAT
*
32248666 TTAATAATAAT-TAT
1 TTAATTATAATATAT
32248680 GTTAATT
1 -TTAATT
32248687 TATATTTTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 8 0.26
14 7 0.23
15 16 0.52
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:32248790 original size:15 final size:15
Alignment explanation
Indices: 32248755--32248806 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
32248745 TTAAGAATTT
*
32248755 TATTAAATTAT-ATA
1 TATTTAATTATAATA
32248769 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
32248783 TATTTAATAATAAT-
1 TATTTAATTATAATA
32248797 TATGTTAATT
1 TAT-TTAATT
32248807 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:32248823 original size:120 final size:120
Alignment explanation
Indices: 32248515--32249040 Score: 936
Period size: 119 Copynumber: 4.4 Consensus size: 120
32248505 ATTTTAAATC
* * * * *
32248515 TTATTAAATCATATATTTTAAATAAAATATATTTAATATTAATTAT-TTCAAATTTTTA-TTTAT
1 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATTTTAC
32248578 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
64 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
*
32248635 TTATT-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
1 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
32248699 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
66 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
*
32248754 TTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
1 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
32248819 TATCATATATTATGATTTGAGTAAATTCATATAA-AATATTAATTATTAAGAATT
66 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
32248873 TTATTAAATTATATATTTTAATT-AAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
1 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
32248937 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
66 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
32248992 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
32249041 TAAATATGAT
Statistics
Matches: 394, Mismatches: 7, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
118 81 0.21
119 188 0.48
120 125 0.32
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT
Found at i:32248890 original size:17 final size:17
Alignment explanation
Indices: 32248870--32248903 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32248860 ATTATTAAGA
32248870 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
32248887 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
32248904 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:32249017 original size:18 final size:17
Alignment explanation
Indices: 32248989--32249023 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32248979 ATTATTAAGA
*
32248989 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32249006 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32249024 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32251709 original size:18 final size:18
Alignment explanation
Indices: 32251682--32251734 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
32251672 TCGGGAAATC
32251682 AAAG-AAAGGGAATCGGG
1 AAAGAAAAGGGAATCGGG
*
32251699 AAAGAAAAGGGAATTGGG
1 AAAGAAAAGGGAATCGGG
*
32251717 AAAGAAAAGGAAATCGGG
1 AAAGAAAAGGGAATCGGG
32251735 GGAGAGAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
17 4 0.12
18 28 0.88
ACGTcount: A:0.51, C:0.04, G:0.38, T:0.08
Consensus pattern (18 bp):
AAAGAAAAGGGAATCGGG
Found at i:32252569 original size:15 final size:15
Alignment explanation
Indices: 32252549--32252578 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32252539 TTAACCATAT
*
32252549 ACCATAAACTCTAAA
1 ACCATAAACCCTAAA
32252564 ACCATAAACCCTAAA
1 ACCATAAACCCTAAA
32252579 CACTAAATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCATAAACCCTAAA
Found at i:32252569 original size:22 final size:22
Alignment explanation
Indices: 32252541--32252585 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
32252531 CTAATATATT
* *
32252541 AACCATATACCATAAACTCTAA
1 AACCATAAACCATAAACACTAA
*
32252563 AACCATAAACCCTAAACACTAA
1 AACCATAAACCATAAACACTAA
32252585 A
1 A
32252586 TTCCAAATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCATAAACCATAAACACTAA
Found at i:32256528 original size:18 final size:17
Alignment explanation
Indices: 32256491--32256529 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
32256481 ATGGCTTTTA
*
32256491 AATAATTTTTATTAAGT
1 AATAATTTTTAATAAGT
*
32256508 AATAATATTTTAATAATT
1 AATAAT-TTTTAATAAGT
32256526 AATA
1 AATA
32256530 TTATAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
AATAATTTTTAATAAGT
Found at i:32263241 original size:24 final size:24
Alignment explanation
Indices: 32263209--32263255 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
32263199 ATTATACCCT
32263209 CCATCGAATTCCTACCTTAATTGC
1 CCATCGAATTCCTACCTTAATTGC
32263233 CCATCGAATTCCTACCTTAATTG
1 CCATCGAATTCCTACCTTAATTG
32263256 GTCCCTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.34
Consensus pattern (24 bp):
CCATCGAATTCCTACCTTAATTGC
Found at i:32264171 original size:43 final size:43
Alignment explanation
Indices: 32264108--32264437 Score: 357
Period size: 43 Copynumber: 7.7 Consensus size: 43
32264098 AGAAATAAAT
* * * *
32264108 GCCGCTATAAATCATA-ACCTTTAGCGGCACTTTTCCCAAAAAT
1 GCCGCTATAGATCA-AGACCTTTAGCGGCGCTTTTCCCACAAAC
32264151 GCCGCTATAGAT-AAGGACCTTTAGCGGCGCATTTT-CCACAAAC
1 GCCGCTATAGATCAA-GACCTTTAGCGGCGC-TTTTCCCACAAAC
** * *
32264194 GCCGCTATAGATCAA-ACCTTTAGTTGCGCTTTT-ACATAAAC
1 GCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
*
32264235 GCCGCTGTAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
32264278 GCCGCTATAGATCAAGACTTTTAGCGGCACTTTTCCCACAAAT
1 GCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
32264321 GCTGCTATAGCTCAAGCCCTTTAGCGGCGCTTATCCCACAAAC
1 GCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * ***
32264364 GCCACCATAGCTCGAGACCTTTAGCAATGCTTTTCCCACAAAC
1 GCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
32264407 GCCACTATAGAACAA-ACCTTTAGCGACGCTT
1 GCCGCTATAGATCAAGACCTTTAGCGGCGCTT
32264438 CTCAAAAAAA
Statistics
Matches: 242, Mismatches: 39, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
41 25 0.10
42 43 0.18
43 168 0.69
44 6 0.02
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (43 bp):
GCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:32264328 original size:127 final size:129
Alignment explanation
Indices: 32264102--32264431 Score: 357
Period size: 127 Copynumber: 2.6 Consensus size: 129
32264092 ATTTTTAGAA
* * * * *
32264102 ATAAATGCCGCTATAAATCATA-ACCTTTAGCGGCACTTTTCCCAAAAATGCCGCTATAGAT-AA
1 ATAAACGCCGCTATAGATCA-AGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAA
* ** *
32264165 GGACCTTTAGCGGCGCATTTTCCACAAACGCCGCTATAGATCAA-ACCTTTAGTTGCGCTT-TTA
65 -GACCTTTAGCGGCACATTTTCCACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTATCA
32264228 C
129 C
*
32264229 ATAAACGCCGCTGTAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAG
1 ATAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAG
* * * * * *
32264294 ACTTTTAGCGGCAC-TTTTCCCACAAATGCTGCTATAGCTCAAGCCCTTTAGCGGCGCTTATCCC
66 ACCTTTAGCGGCACATTTT-CCACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTATCAC
* * * * * *** * *
32264358 ACAAACGCCACCATAGCTCGAGACCTTTAGCAATGCTTTTCCCACAAACGCCACTATAGAACAA-
1 ATAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAG
32264422 ACCTTTAGCG
66 ACCTTTAGCG
32264432 ACGCTTCTCA
Statistics
Matches: 170, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
126 5 0.03
127 86 0.51
128 24 0.14
129 55 0.32
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (129 bp):
ATAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAG
ACCTTTAGCGGCACATTTTCCACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTATCAC
Found at i:32265877 original size:2 final size:2
Alignment explanation
Indices: 32265870--32265923 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
32265860 CCAACAACTT
32265870 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
32265912 GA GA GA GA GA GA
1 GA GA GA GA GA GA
32265924 AGGGAAAAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:32266754 original size:39 final size:39
Alignment explanation
Indices: 32266705--32266779 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
32266695 GCACTGGCAA
* *
32266705 TCATTGAATTTATACCAAAGGCCTATCCATCATAACATG
1 TCATAGAATTTATACCAAAGGCCCATCCATCATAACATG
* *
32266744 TCATAGAATTTATACCATAGGCCCATGCATCATAAC
1 TCATAGAATTTATACCAAAGGCCCATCCATCATAAC
32266780 CTGTTTGCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (39 bp):
TCATAGAATTTATACCAAAGGCCCATCCATCATAACATG
Found at i:32268413 original size:203 final size:204
Alignment explanation
Indices: 32268045--32268452 Score: 703
Period size: 203 Copynumber: 2.0 Consensus size: 204
32268035 AAAATCATTT
* * * *
32268045 TATTTTTGTATTTTAATTTTATTTCTTATAATTTAGTCCTTTCCAAAATAAATAATTATACTTAA
1 TATTTTTGTATTTTAATTTTATATCTTATAATTTAGTCATCTCCAAAATAAATAATTATACCTAA
* *
32268110 ATATCCATATGAATCTATTACTTTTTTTAATTTATTTATTAATTCTATTTAAATTAATATTTAAA
66 ATATCCATATGAATCTATTAC-TTTTTTAACTTATTTATTAATTCTATTTAAACTAATATTTAAA
* *
32268175 TATATCAAATGCTTTAGATTAAATTTTTTTAAATATAAAAGTATTAATTAATTGTATAAAATTTT
130 TATATCAAATGCTTTAGATTAAATTTTTTTAAATATAAAAGAATTAATTAATTGTATAAAATTTA
32268240 ATCATTTAAC
195 ATCATTTAAC
32268250 TATTTTTGTATTTTAATTTTATATCTTATAATTT-GATCATCTCCAAAATAAATAATTATACCTA
1 TATTTTTGTATTTTAATTTTATATCTTATAATTTAG-TCATCTCCAAAATAAATAATTATACCTA
32268314 AATATCCATATGAATCTATTA-TTTTTTAACTTATTTATTAATTCTATTTAAACTAATATTTAAA
65 AATATCCATATGAATCTATTACTTTTTTAACTTATTTATTAATTCTATTTAAACTAATATTTAAA
*
32268378 TATATCAAATGGTTTAGATTAAATTTTTTTAAATATAAAAGAATTAATTAATTGTATAAAATTTA
130 TATATCAAATGCTTTAGATTAAATTTTTTTAAATATAAAAGAATTAATTAATTGTATAAAATTTA
32268443 ATCATTTAAC
195 ATCATTTAAC
32268453 CAATCTCAAG
Statistics
Matches: 193, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
203 113 0.59
204 1 0.01
205 79 0.41
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.50
Consensus pattern (204 bp):
TATTTTTGTATTTTAATTTTATATCTTATAATTTAGTCATCTCCAAAATAAATAATTATACCTAA
ATATCCATATGAATCTATTACTTTTTTAACTTATTTATTAATTCTATTTAAACTAATATTTAAAT
ATATCAAATGCTTTAGATTAAATTTTTTTAAATATAAAAGAATTAATTAATTGTATAAAATTTAA
TCATTTAAC
Found at i:32272383 original size:18 final size:18
Alignment explanation
Indices: 32272351--32272393 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
32272341 ACTAATTATT
32272351 ATATTTA-AAATAAAATC-
1 ATATTTATAAATAAAA-CG
*
32272368 ATATTTATATATAAAACG
1 ATATTTATAAATAAAACG
32272386 ATATTTAT
1 ATATTTAT
32272394 TTAATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (18 bp):
ATATTTATAAATAAAACG
Found at i:32273042 original size:137 final size:137
Alignment explanation
Indices: 32272796--32273070 Score: 541
Period size: 137 Copynumber: 2.0 Consensus size: 137
32272786 CTAGGTCCTT
32272796 TCTGCCATATTTAATCATCTCAAGCTTGATTTCTTCAATTTCTTTCTTAAAATTTTAGTGAAATC
1 TCTGCCATATTTAATCATCTCAAGCTTGATTTCTTCAATTTCTTTCTTAAAATTTTAGTGAAATC
32272861 AATAGAACAAACTCATAGCAAGCTTAATTTCTTGTAGAATCAACTAGTGCTCGTGTTGGAGGAGA
66 AATAGAACAAACTCATAGCAAGCTTAATTTCTTGTAGAATCAACTAGTGCTCGTGTTGGAGGAGA
32272926 GAGAAAA
131 GAGAAAA
32272933 TCTGCCATATTTAATCATCTCAAGCTTGATTTCTTCAATTTCTTTCTTAAAATTTTAGTGAAATC
1 TCTGCCATATTTAATCATCTCAAGCTTGATTTCTTCAATTTCTTTCTTAAAATTTTAGTGAAATC
*
32272998 AATAGAACAAACTCATATCAAGCTTAATTTCTTGTAGAATCAACTAGTGCTCGTGTTGGAGGAGA
66 AATAGAACAAACTCATAGCAAGCTTAATTTCTTGTAGAATCAACTAGTGCTCGTGTTGGAGGAGA
32273063 GAGAAAA
131 GAGAAAA
32273070 T
1 T
32273071 TGAATTTAGG
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (137 bp):
TCTGCCATATTTAATCATCTCAAGCTTGATTTCTTCAATTTCTTTCTTAAAATTTTAGTGAAATC
AATAGAACAAACTCATAGCAAGCTTAATTTCTTGTAGAATCAACTAGTGCTCGTGTTGGAGGAGA
GAGAAAA
Found at i:32276182 original size:19 final size:18
Alignment explanation
Indices: 32276159--32276201 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
32276149 ATTTAGCCTT
*
32276159 TTTTTATTTTTACTTTAA
1 TTTTTATTTTTAATTTAA
32276177 TATTTTATTTTTAATTTAA
1 T-TTTTATTTTTAATTTAA
32276196 TTTTTA
1 TTTTTA
32276202 CATTCTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTATTTTTAATTTAA
Found at i:32279638 original size:25 final size:25
Alignment explanation
Indices: 32279577--32279657 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
32279567 TTAGACTCAC
* *
32279577 TTTAATTTGTCTGAACAATAGATACAA
1 TTTAATTTGTCTGAACTA-AGA-CCAA
**
32279604 -TTAAAGTGTCTGAACTAAGACCAA
1 TTTAATTTGTCTGAACTAAGACCAA
*
32279628 TTTAATTTGTCTAAACTAAGACCAA
1 TTTAATTTGTCTGAACTAAGACCAA
32279653 TTTAA
1 TTTAA
32279658 ATCACTCAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
24 3 0.07
25 29 0.63
26 14 0.30
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.35
Consensus pattern (25 bp):
TTTAATTTGTCTGAACTAAGACCAA
Found at i:32280362 original size:35 final size:35
Alignment explanation
Indices: 32280316--32280385 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
32280306 ATGGAATGCA
32280316 GAAACCAATGTCAGAGTAGGAGTTATAAGTTGGTC
1 GAAACCAATGTCAGAGTAGGAGTTATAAGTTGGTC
32280351 GAAACCAATGTCAGAGTAGGAGTTATAAGTTGGTC
1 GAAACCAATGTCAGAGTAGGAGTTATAAGTTGGTC
32280386 TTACCTTCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (35 bp):
GAAACCAATGTCAGAGTAGGAGTTATAAGTTGGTC
Found at i:32280918 original size:23 final size:23
Alignment explanation
Indices: 32280888--32280932 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
32280878 CACTTGTAGA
*
32280888 TTAATTTCATTTCTGATGTTACC
1 TTAATTTCATTTCTGATCTTACC
32280911 TTAATTTCATTTCTGATCTTAC
1 TTAATTTCATTTCTGATCTTAC
32280933 TTTTCTCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.53
Consensus pattern (23 bp):
TTAATTTCATTTCTGATCTTACC
Found at i:32281710 original size:54 final size:54
Alignment explanation
Indices: 32281620--32281723 Score: 181
Period size: 54 Copynumber: 1.9 Consensus size: 54
32281610 ATTCCTTGAT
* * *
32281620 GAATAGGAATCTCGATATAGATCTCTTCTCAGAAAATCATTAGACATTTGGCTC
1 GAATAGGAATCACGATATAGATCTCTGCTCAAAAAATCATTAGACATTTGGCTC
32281674 GAATAGGAATCACGATATAGATCTCTGCTCAAAAAATCATTAGACATTTG
1 GAATAGGAATCACGATATAGATCTCTGCTCAAAAAATCATTAGACATTTG
32281724 AATCCTTAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (54 bp):
GAATAGGAATCACGATATAGATCTCTGCTCAAAAAATCATTAGACATTTGGCTC
Found at i:32283886 original size:25 final size:25
Alignment explanation
Indices: 32283838--32283909 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
32283828 CACTTTAATT
*
32283838 TGTCTAAACAATAGACACAA-TTAAAG
1 TGTCTAAACTA-AGAC-CAATTTAAAG
* * **
32283864 TGTCTGATCTAAGACCAATTTAATT
1 TGTCTAAACTAAGACCAATTTAAAG
*
32283889 TGTCTAAAGTAAGACCAATTT
1 TGTCTAAACTAAGACCAATTT
32283910 GAATCACTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 3 0.08
25 26 0.70
26 8 0.22
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (25 bp):
TGTCTAAACTAAGACCAATTTAAAG
Found at i:32287523 original size:31 final size:34
Alignment explanation
Indices: 32287453--32287529 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 34
32287443 TATTAAATCT
* *
32287453 TATTAAAATAATAGAATATTTATTTACAAGATAAA
1 TATTAAATTAATAAAATATTTATTTA-AAGATAAA
*
32287488 TATTAAATTAATAAAATA-TTA-TT-AAGATAAG
1 TATTAAATTAATAAAATATTTATTTAAAGATAAA
32287519 TATTAAATTAA
1 TATTAAATTAA
32287530 ATTTAATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
31 18 0.46
33 2 0.05
34 3 0.08
35 16 0.41
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.39
Consensus pattern (34 bp):
TATTAAATTAATAAAATATTTATTTAAAGATAAA
Found at i:32292786 original size:10 final size:9
Alignment explanation
Indices: 32292771--32292796 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32292761 GTTTTGTTCT
32292771 AAAAAAAAG
1 AAAAAAAAG
32292780 AAAAAAAAG
1 AAAAAAAAG
32292789 AAAAAAAA
1 AAAAAAAA
32292797 TATTTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:32298202 original size:10 final size:10
Alignment explanation
Indices: 32298187--32298213 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
32298177 ACAAACGATT
32298187 TTTTTTTGAA
1 TTTTTTTGAA
32298197 TTTTTTTGAA
1 TTTTTTTGAA
32298207 TTTTTTT
1 TTTTTTT
32298214 CTAAAAATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:32299839 original size:50 final size:50
Alignment explanation
Indices: 32299757--32299989 Score: 245
Period size: 50 Copynumber: 4.7 Consensus size: 50
32299747 AAAGAGATCA
* * *
32299757 CATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAGGTCC
* * *
32299807 CATGTAAGACCATGTCTGGGACGTGGCGTTGGCACCGACATGAGTGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAGGTCC
** * * * **
32299857 CCCGTAAGACCATGTTTGGGACATGGCATAGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAGGTCC
* * * * * * **
32299907 CATGTAAGACCATATCAGGGATATGACATTGGTA--GTACATGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ACATGAGAGGTCC
*
32299956 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
32299990 TGTTATTATC
Statistics
Matches: 147, Mismatches: 35, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
48 1 0.01
49 37 0.25
50 109 0.74
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAGGTCC
Found at i:32307232 original size:50 final size:50
Alignment explanation
Indices: 32307152--32307392 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 50
32307142 ATTTGGGTAA
* * *
32307152 AGAGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
1 AGAGGTCACATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
*
32307202 AGAGGTCACATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCACATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
* * *
32307252 AGAGGTCCCCA-GTAAGACCATGTTTGGGACATGGCATGGGCACCGATATG
1 AGAGGT-CACATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
** * * * * * *
32307302 AGAACTCCCATGTAAGACCATATATGGGATACGGCATTGGCA--GTACATG
1 AGAGGTCACATGTAAGACCATGTTTGGGACATGGCATTGGCACCG-AGATG
* ** * * * *
32307351 AAACATCCCATGTAAGACTATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCACATGTAAGACCATGTTTGGGACATGGCATTGGCA
32307393 TGTTATTATC
Statistics
Matches: 163, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 41 0.25
50 118 0.72
51 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCACATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
Found at i:32310113 original size:26 final size:26
Alignment explanation
Indices: 32310084--32310157 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 26
32310074 TGTATTAATA
32310084 TGATCATTCAATGTTTTAAATTGCAT
1 TGATCATTCAATGTTTTAAATTGCAT
** *
32310110 TGATTGTTCCA------AAATT--AT
1 TGATCATTCAATGTTTTAAATTGCAT
32310128 TGATCATTCAATGTTTTAAATTGCAT
1 TGATCATTCAATGTTTTAAATTGCAT
32310154 TGAT
1 TGAT
32310158 TGTTCCAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 16
0.61 0.11 0.29
Matches are distributed among these distances:
18 10 0.29
20 5 0.15
24 5 0.15
26 14 0.41
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (26 bp):
TGATCATTCAATGTTTTAAATTGCAT
Found at i:32310133 original size:44 final size:44
Alignment explanation
Indices: 32310084--32310172 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
32310074 TGTATTAATA
32310084 TGATCATTCAATGTTTTAAATTGCATTGATTGTTCCAAAATTAT
1 TGATCATTCAATGTTTTAAATTGCATTGATTGTTCCAAAATTAT
32310128 TGATCATTCAATGTTTTAAATTGCATTGATTGTTCCAAAATTAT
1 TGATCATTCAATGTTTTAAATTGCATTGATTGTTCCAAAATTAT
32310172 T
1 T
32310173 CGTAGCATCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (44 bp):
TGATCATTCAATGTTTTAAATTGCATTGATTGTTCCAAAATTAT
Found at i:32310749 original size:25 final size:26
Alignment explanation
Indices: 32310721--32310777 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
32310711 AGATTAAAGT
*
32310721 CTAACCTA-AAAGGAAAAGATAAAA-C
1 CTAACCTACAAAGGAAAA-AAAAAACC
* *
32310746 CTAAACTACAAATGAAAAAAAAAACC
1 CTAACCTACAAAGGAAAAAAAAAACC
32310772 CTAACC
1 CTAACC
32310778 CTAACCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.60, C:0.21, G:0.07, T:0.12
Consensus pattern (26 bp):
CTAACCTACAAAGGAAAAAAAAAACC
Found at i:32311024 original size:22 final size:22
Alignment explanation
Indices: 32310969--32311027 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
32310959 TGCGTCAGTC
* * *
32310969 TTAGCTATTGCAATATTCGAGT
1 TTAGGTATTGCGATATCCGAGT
*
32310991 TTAGGTATTGCGATATCCGTGT
1 TTAGGTATTGCGATATCCGAGT
32311013 TTAGGTATTGCGATA
1 TTAGGTATTGCGATA
32311028 CCCAAGTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (22 bp):
TTAGGTATTGCGATATCCGAGT
Found at i:32314742 original size:12 final size:12
Alignment explanation
Indices: 32314721--32314750 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32314711 TCAGGCTGTT
*
32314721 ACACGACCTAGC
1 ACACGGCCTAGC
32314733 ACACGGCCTAGC
1 ACACGGCCTAGC
32314745 ACACGG
1 ACACGG
32314751 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:32316173 original size:11 final size:10
Alignment explanation
Indices: 32316141--32316174 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
32316131 AAAACAAACG
*
32316141 GAATTTTTTG
1 GAATTTTTTT
32316151 GAATTTTTTT
1 GAATTTTTTT
32316161 GAATTTCTTTT
1 GAATTT-TTTT
32316172 GAA
1 GAA
32316175 AATGCATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.68
11 7 0.32
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.59
Consensus pattern (10 bp):
GAATTTTTTT
Found at i:32317915 original size:25 final size:25
Alignment explanation
Indices: 32317884--32317935 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
32317874 TTAACTGAAT
*
32317884 GTATTTAGTTCAACCAATTAATTTA
1 GTATTTAGTTCAACCAATCAATTTA
*
32317909 GTATTTAGTTCAACTAATCAATTTA
1 GTATTTAGTTCAACCAATCAATTTA
32317934 GT
1 GT
32317936 TTATACAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (25 bp):
GTATTTAGTTCAACCAATCAATTTA
Found at i:32319974 original size:121 final size:121
Alignment explanation
Indices: 32319760--32320001 Score: 484
Period size: 121 Copynumber: 2.0 Consensus size: 121
32319750 AAAACCCCTC
32319760 CAACTTCACCAGATTTCCATGGTTTACCTTCAAAATCAGAATCATGGTTCAGTCCATTAATCAAA
1 CAACTTCACCAGATTTCCATGGTTTACCTTCAAAATCAGAATCATGGTTCAGTCCATTAATCAAA
32319825 TCATGCTTACTTTAGGAATAAAAGAAAAGGTTATAGGCGTTATATAATATCATCTT
66 TCATGCTTACTTTAGGAATAAAAGAAAAGGTTATAGGCGTTATATAATATCATCTT
32319881 CAACTTCACCAGATTTCCATGGTTTACCTTCAAAATCAGAATCATGGTTCAGTCCATTAATCAAA
1 CAACTTCACCAGATTTCCATGGTTTACCTTCAAAATCAGAATCATGGTTCAGTCCATTAATCAAA
32319946 TCATGCTTACTTTAGGAATAAAAGAAAAGGTTATAGGCGTTATATAATATCATCTT
66 TCATGCTTACTTTAGGAATAAAAGAAAAGGTTATAGGCGTTATATAATATCATCTT
32320002 GGAGAGGATG
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (121 bp):
CAACTTCACCAGATTTCCATGGTTTACCTTCAAAATCAGAATCATGGTTCAGTCCATTAATCAAA
TCATGCTTACTTTAGGAATAAAAGAAAAGGTTATAGGCGTTATATAATATCATCTT
Found at i:32320283 original size:30 final size:28
Alignment explanation
Indices: 32320217--32320285 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 28
32320207 ATGTATGAAA
*
32320217 TTTTTAATACACAAAATTAATTTACTTT
1 TTTTTAATACACAAAACTAATTTACTTT
32320245 TTGATTTAACTTACA-AAAACTAATTTACTTAT
1 TT--TTTAA--TACACAAAACTAATTTACTT-T
32320277 TTTTTAATA
1 TTTTTAATA
32320286 AAAATAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
28 4 0.11
30 10 0.29
31 14 0.40
32 7 0.20
ACGTcount: A:0.39, C:0.10, G:0.01, T:0.49
Consensus pattern (28 bp):
TTTTTAATACACAAAACTAATTTACTTT
Found at i:32320409 original size:52 final size:52
Alignment explanation
Indices: 32320297--32320401 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
32320287 AAATAAATAA
*
32320297 AATACAATTTAACGCTCTCTCAATCATACTTTTACTTCTTAGAACTAATATG
1 AATACAATTTAACACTCTCTCAATCATACTTTTACTTCTTAGAACTAATATG
32320349 AATACAATTTAACACTCTCTCAATCATACTTTTACTTCTTAGAACTAATATG
1 AATACAATTTAACACTCTCTCAATCATACTTTTACTTCTTAGAACTAATATG
32320401 A
1 A
32320402 GTTCAATTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (52 bp):
AATACAATTTAACACTCTCTCAATCATACTTTTACTTCTTAGAACTAATATG
Found at i:32326124 original size:9 final size:9
Alignment explanation
Indices: 32326110--32326149 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
32326100 CCAATACAAA
*
32326110 CACCTCTGC
1 CACCTCTAC
32326119 CACCTCTAC
1 CACCTCTAC
*
32326128 CACCTCCAC
1 CACCTCTAC
*
32326137 CACCACTAC
1 CACCTCTAC
32326146 CACC
1 CACC
32326150 CTCCCTTTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.23, C:0.60, G:0.03, T:0.15
Consensus pattern (9 bp):
CACCTCTAC
Found at i:32333049 original size:24 final size:26
Alignment explanation
Indices: 32333002--32333058 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
32332992 CTGGAGCTCT
*
32333002 TGATTAAAGGCTCTTCACGAGCTTCC
1 TGATTATAGGCTCTTCACGAGCTTCC
* *
32333028 TGATTATA-GCTCTT-ATGAGCTTCT
1 TGATTATAGGCTCTTCACGAGCTTCC
32333052 TG-TTATA
1 TGATTATA
32333059 TGGCCCTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 5 0.18
24 10 0.36
25 6 0.21
26 7 0.25
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (26 bp):
TGATTATAGGCTCTTCACGAGCTTCC
Found at i:32334503 original size:43 final size:43
Alignment explanation
Indices: 32334455--32334552 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
32334445 ATGGCCTAAG
* * *
32334455 ACACGGATGTGTCCCTTGGCCATGTGAACCACACGGTTTGACC
1 ACACGGACGTGTCCCTTGGCCATGTGAACCACACGGTCTAACC
*
32334498 ACACGGGCGTGTCCCTTGGCCATGTGAACCACACGGTCTAACC
1 ACACGGACGTGTCCCTTGGCCATGTGAACCACACGGTCTAACC
32334541 ACACAGG-CGTGT
1 ACAC-GGACGTGT
32334553 GACCCCTGCA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 48 0.96
44 2 0.04
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (43 bp):
ACACGGACGTGTCCCTTGGCCATGTGAACCACACGGTCTAACC
Found at i:32335600 original size:23 final size:23
Alignment explanation
Indices: 32335573--32335619 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32335563 ACATAGTAGC
32335573 AAGATATATGAAAGATTTCTTTT
1 AAGATATATGAAAGATTTCTTTT
32335596 AAGATATATGAAAGATTTCTTTT
1 AAGATATATGAAAGATTTCTTTT
32335619 A
1 A
32335620 CACTAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (23 bp):
AAGATATATGAAAGATTTCTTTT
Found at i:32337796 original size:3 final size:3
Alignment explanation
Indices: 32337780--32337860 Score: 67
Period size: 3 Copynumber: 26.3 Consensus size: 3
32337770 TAATGAATAC
* * *
32337780 AAT AAT AAGA AAT AAT AAT AAA AAT AAT AA- AAT ATT CAATT AAT AAT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT -AA-T AAT AAT
* *
32337827 ACT ATAT AAT AAT AAT GAT AAT AAT AA- AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32337861 TAAAAAAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
2 4 0.06
3 50 0.81
4 7 0.11
5 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32344702 original size:35 final size:36
Alignment explanation
Indices: 32344660--32344744 Score: 95
Period size: 35 Copynumber: 2.4 Consensus size: 36
32344650 ACACTAGATT
* ** *
32344660 CTCATAAGAGGC-AGTCCATCCGAAACACACCAACG
1 CTCATAAGAGGCTAATCCATCAAAAAAACACCAACG
* *
32344695 CTCATAAGA-GCTAATCCCTCAAAAAAACACCAATG
1 CTCATAAGAGGCTAATCCATCAAAAAAACACCAACG
32344730 CTCATAAGA-GCTAAT
1 CTCATAAGAGGCTAAT
32344745 ACAACCGAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
34 2 0.05
35 41 0.95
ACGTcount: A:0.41, C:0.29, G:0.13, T:0.16
Consensus pattern (36 bp):
CTCATAAGAGGCTAATCCATCAAAAAAACACCAACG
Found at i:32346126 original size:33 final size:33
Alignment explanation
Indices: 32346083--32346310 Score: 125
Period size: 33 Copynumber: 6.4 Consensus size: 33
32346073 GTGGATTCAG
* *
32346083 CACTTGGCAACCACCAGTGATTCGAGGAATCAA
1 CACTTAGCAACCACCAATGATTCGAGGAATCAA
* * *
32346116 CACTTAGCAACCACCAATGATTTGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGAGGAATCAA
* * * * *
32346149 CACTTATCAACCCCTTTCACATTCAAGATATGGTGGAATCAG
1 CACTTAGCAACCAC---CA-A-T---GAT-TCGAGGAATCAA
*
32346191 CACTTAGCAACCACCAATGATTCG-GGAAATCAG
1 CACTTAGCAACCACCAATGATTCGAGG-AATCAA
* * *
32346224 CACTTAGCAACCCCTTTCACATTCAAGTTACGGTGGAATCAA
1 CACTTAGCAACCAC---CA-A-T-GA-TT-C-GAGGAATCAA
* *
32346266 CACTTAGCAACCACCAATGATTCGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGAGGAATCAA
*
32346299 CACTTCGCAACC
1 CACTTAGCAACC
32346311 CCTTGGGGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 40
0.72 0.09 0.19
Matches are distributed among these distances:
32 2 0.01
33 80 0.52
34 4 0.03
35 2 0.01
36 5 0.03
37 4 0.03
38 4 0.03
39 5 0.03
40 2 0.01
41 4 0.03
42 41 0.26
43 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (33 bp):
CACTTAGCAACCACCAATGATTCGAGGAATCAA
Found at i:32346188 original size:42 final size:42
Alignment explanation
Indices: 32346141--32346277 Score: 141
Period size: 42 Copynumber: 3.5 Consensus size: 42
32346131 AATGATTTGG
*
32346141 GGAATCAGCACTTATCAACCCCTTTCACATTCAAGATATGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGATATGGT
*
32346183 GGAATCAGCACTTAGCAACCAC---CA-A-T---GAT-TCGG-
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGATAT-GGT
* * *
32346216 GAAATCAGCACTTAGCAACCCCTTTCACATTCAAGTTACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGATATGGT
*
32346258 GGAATCAACACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
32346278 ACCAATGATT
Statistics
Matches: 76, Mismatches: 8, Indels: 22
0.72 0.08 0.21
Matches are distributed among these distances:
33 21 0.28
34 5 0.07
36 2 0.03
37 2 0.03
38 2 0.03
39 2 0.03
41 4 0.05
42 38 0.50
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGATATGGT
Found at i:32346235 original size:75 final size:75
Alignment explanation
Indices: 32346108--32346314 Score: 351
Period size: 75 Copynumber: 2.8 Consensus size: 75
32346098 AGTGATTCGA
* *
32346108 GGAATCAACACTTAGCAACCACCAATGATTTGGGGAATCAGCACTTATCAACCCCTTTCACATTC
1 GGAATCAACACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTC
*
32346173 AAGATATGGT
66 AAGATACGGT
* *
32346183 GGAATCAGCACTTAGCAACCACCAATGATTCGGGAAATCAGCACTTAGCAACCCCTTTCACATTC
1 GGAATCAACACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTC
*
32346248 AAGTTACGGT
66 AAGATACGGT
*
32346258 GGAATCAACACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTCGCAACCCCTT
1 GGAATCAACACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
32346315 GGGGGAATCA
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 123 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (75 bp):
GGAATCAACACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTC
AAGATACGGT
Done.