Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 111 of 218
Found at i:32727694 original size:20 final size:20
Alignment explanation
Indices: 32727643--32727742 Score: 105
Period size: 20 Copynumber: 5.0 Consensus size: 20
32727633 TTGTACAGGA
*
32727643 TTGCACTTCAGTGCCTCTG-
1 TTGCACTTCGGTGCCTCTGT
** *
32727662 TCACACTTCGGTGTCTCTGT
1 TTGCACTTCGGTGCCTCTGT
* *
32727682 TTGCACTTTGGTGCCTCTGA
1 TTGCACTTCGGTGCCTCTGT
* *
32727702 TTGCACAATC-GTGCCTCTTT
1 TTGCAC-TTCGGTGCCTCTGT
32727722 TTGCACTTCGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
32727742 T
1 T
32727743 ACACATCTAT
Statistics
Matches: 63, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
19 17 0.27
20 45 0.71
21 1 0.02
ACGTcount: A:0.10, C:0.29, G:0.21, T:0.40
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTGT
Found at i:32731163 original size:20 final size:21
Alignment explanation
Indices: 32731125--32731166 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
32731115 AAAAGAAGAA
32731125 ATTTAAGAACTAAAAATAAAT
1 ATTTAAGAACTAAAAATAAAT
32731146 ATTTAA-AA-TAATAAATAAAT
1 ATTTAAGAACTAA-AAATAAAT
32731166 A
1 A
32731167 AATAGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.15
20 11 0.55
21 6 0.30
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
ATTTAAGAACTAAAAATAAAT
Found at i:32733294 original size:35 final size:33
Alignment explanation
Indices: 32733255--32733322 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 33
32733245 ATTAGTTTAA
32733255 TACTATTATTAATTTATTA-TTATTATTATTATTGG
1 TACTATT-TTAATTT-TTACTTATTATT-TTATTGG
*
32733290 TACTATTTTTATTTTTACTTTATTATTTTATTG
1 TACTATTTTAATTTTTAC-TTATTATTTTATTG
32733323 TTTTTATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 3 0.10
34 12 0.40
35 15 0.50
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (33 bp):
TACTATTTTAATTTTTACTTATTATTTTATTGG
Found at i:32733714 original size:19 final size:19
Alignment explanation
Indices: 32733690--32733727 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32733680 AAGGGGAAAA
*
32733690 ACCTATTTTATTATATTTT
1 ACCTATTTTAATATATTTT
32733709 ACCTATTTTAATATATTTT
1 ACCTATTTTAATATATTTT
32733728 GCTTATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (19 bp):
ACCTATTTTAATATATTTT
Found at i:32736518 original size:13 final size:13
Alignment explanation
Indices: 32736500--32736531 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
32736490 CCCCCCCAAA
32736500 AAAAAAAAAAGAG
1 AAAAAAAAAAGAG
32736513 AAAAAAAAAAGAG
1 AAAAAAAAAAGAG
32736526 AGAAAA
1 A-AAAA
32736532 GTGGACCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAG
Found at i:32736518 original size:15 final size:15
Alignment explanation
Indices: 32736498--32736531 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
32736488 CCCCCCCCCA
32736498 AAAAAAAAAAAAGAG
1 AAAAAAAAAAAAGAG
*
32736513 AAAAAAAAAAGAGAG
1 AAAAAAAAAAAAGAG
32736528 AAAA
1 AAAA
32736532 GTGGACCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGAG
Found at i:32738849 original size:18 final size:18
Alignment explanation
Indices: 32738826--32738882 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
32738816 AGAACCCCAT
*
32738826 CTGGAGTAATCACTTGGC
1 CTGGAGTAATCACTAGGC
32738844 CTGGAGTAATCACTAGGC
1 CTGGAGTAATCACTAGGC
*
32738862 CGGGAGTAATCACTAGGC
1 CTGGAGTAATCACTAGGC
32738880 CTG
1 CTG
32738883 TTACCCCATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (18 bp):
CTGGAGTAATCACTAGGC
Found at i:32753823 original size:43 final size:43
Alignment explanation
Indices: 32753776--32753932 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 43
32753766 CAATGTCATA
* * *
32753776 TCCCAGATATGGTCTTACACGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
* * * * * * *
32753819 TCCCAGATAGGGTTTTATATGAAATCATATA-CGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
* * *
32753861 TCCCAAACATGGTCTTACACGTAATCTCATATAGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
*
32753904 TCCCAGACATGGTCTTACACGAAATCACA
1 TCCCAGACATGGTCTTACACGTAATCACA
32753933 CCTCGGGAGT
Statistics
Matches: 92, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 32 0.35
43 60 0.65
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:32760612 original size:27 final size:26
Alignment explanation
Indices: 32760561--32760624 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
32760551 ACATGTTTTC
*
32760561 TCAAAATTTTACCAGGGGCAAAATCG
1 TCAAAATTTTACAAGGGGCAAAATCG
* **
32760587 TTAAAATTTTACTAAGGGGTGAAATCG
1 TCAAAATTTTAC-AAGGGGCAAAATCG
32760614 TCAAAATTTTA
1 TCAAAATTTTA
32760625 TTGAGAGTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACAAGGGGCAAAATCG
Found at i:32762293 original size:14 final size:14
Alignment explanation
Indices: 32762276--32762303 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32762266 TAAAATAAAA
32762276 TAGGCCATCATCCT
1 TAGGCCATCATCCT
32762290 TAGGCCATCATCCT
1 TAGGCCATCATCCT
32762304 CTGTTCATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (14 bp):
TAGGCCATCATCCT
Found at i:32777546 original size:13 final size:11
Alignment explanation
Indices: 32777510--32777540 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
32777500 TCGCCCGTAT
32777510 TAATTTTTATA
1 TAATTTTTATA
*
32777521 TTATTTTTATA
1 TAATTTTTATA
32777532 TAATTTTTA
1 TAATTTTTA
32777541 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:32790026 original size:17 final size:18
Alignment explanation
Indices: 32789988--32790028 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
32789978 TTGAATGTAA
*
32789988 AAATGAAGTGAAATATGT
1 AAATGAAGTGAAATATGG
*
32790006 AAATGAA-TGATATATGG
1 AAATGAAGTGAAATATGG
32790023 AAATGA
1 AAATGA
32790029 TAAGGAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (18 bp):
AAATGAAGTGAAATATGG
Found at i:32800650 original size:15 final size:16
Alignment explanation
Indices: 32800630--32800659 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32800620 TCTATCCCGT
32800630 TGCATTT-TTCTATTA
1 TGCATTTCTTCTATTA
32800645 TGCATTTCTTCTATT
1 TGCATTTCTTCTATT
32800660 TTTTGAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60
Consensus pattern (16 bp):
TGCATTTCTTCTATTA
Found at i:32808983 original size:48 final size:48
Alignment explanation
Indices: 32808889--32808984 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
32808879 GAAGAAGGAG
* * * *
32808889 AAGGGACCAAGGTGAAAACCCGCAAAGGGCACCTTGATTCCTAAAAAA
1 AAGGGACCAAAGTAAAAACCCGCAAAGGGCACCTTGAGTCCAAAAAAA
****
32808937 AAGGGACCAAAGTAAAAACCCGCAAAGGGTGTTTTGAGTCCAAAAAAA
1 AAGGGACCAAAGTAAAAACCCGCAAAGGGCACCTTGAGTCCAAAAAAA
32808985 TAAACCAAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.14
Consensus pattern (48 bp):
AAGGGACCAAAGTAAAAACCCGCAAAGGGCACCTTGAGTCCAAAAAAA
Found at i:32810616 original size:44 final size:44
Alignment explanation
Indices: 32810278--32810604 Score: 393
Period size: 44 Copynumber: 7.4 Consensus size: 44
32810268 AAACTATAAA
* * * * *
32810278 TCCTAGCTCCTTGACCCGCAGTGGAATAGGTGGAAGACTGAAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * *
32810322 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * * *
32810366 TCCTAGCTCCCTGACCATCAGTGGAATAGGTGGAAGACTGAAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * * *
32810410 TTCTAGCTCCTTGAACAGCAGTGGAATAGGCGGAAGATTGTAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * * * *
32810454 TCCTAGCTCCTTGACCCGCAGTGGAATAGGTGGAAGACTGAAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
** * *
32810498 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCAGAAGATTTTAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * *
32810542 TCCTAGCTCCCTGACCAGCAGTAGAATAGGTAGAAGATTGTAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
*
32810586 TCCTAGCTCCCTGAGCAGC
1 TCCTAGCTCCCTGAACAGC
32810605 TATGGAGTAG
Statistics
Matches: 238, Mismatches: 45, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 238 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (44 bp):
TCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
Found at i:32810641 original size:88 final size:88
Alignment explanation
Indices: 32810272--32810604 Score: 531
Period size: 88 Copynumber: 3.8 Consensus size: 88
32810262 CTGGTGAAAC
* *
32810272 TATAAATCCTAGCTCCTTGACCCGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
1 TATAAATCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
32810337 CAGCAGTGGAATAGGCGGAAGAT
66 CAGCAGTGGAATAGGCGGAAGAT
* * *
32810360 TATAAATCCTAGCTCCCTGACCATCAGTGGAATAGGTGGAAGACTGAAAGTTCTAGCTCCTTGAA
1 TATAAATCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
32810425 CAGCAGTGGAATAGGCGGAAGAT
66 CAGCAGTGGAATAGGCGGAAGAT
* * *
32810448 TGTAAATCCTAGCTCCTTGACCCGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
1 TATAAATCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
*
32810513 CAGCAGTGGAATAGGCAGAAGAT
66 CAGCAGTGGAATAGGCGGAAGAT
* * * * * *
32810536 TTTAAATCCTAGCTCCCTGACCAGCAGTAGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGAG
1 TATAAATCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
32810601 CAGC
66 CAGC
32810605 TATGGAGTAG
Statistics
Matches: 225, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 225 1.00
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (88 bp):
TATAAATCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAAGTCCTAGCTCCCTGAA
CAGCAGTGGAATAGGCGGAAGAT
Found at i:32810745 original size:88 final size:88
Alignment explanation
Indices: 32810636--32810886 Score: 414
Period size: 88 Copynumber: 2.9 Consensus size: 88
32810626 CAGATCTTAT
* *
32810636 CTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTACATCAACAGCGAAG
1 CTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCAACAGTGAAG
32810701 CAGATCGAAGACACAAT-CCTTGC
66 CAGATCGAAGACAC-ATGCCTTGC
*
32810724 CTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCAACAGTGAAG
1 CTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCAACAGTGAAG
32810789 CAGATCGAAGACACATGCCTTGC
66 CAGATCGAAGACACATGCCTTGC
* ** * *
32810812 CACCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGTAGGCCTTGCCTTCCTGCATCGATAGTGAAG
1 CTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCAACAGTGAAG
32810877 CAGATCGAAG
66 CAGATCGAAG
32810887 CAAAATTCCT
Statistics
Matches: 153, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
87 2 0.01
88 151 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (88 bp):
CTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCAACAGTGAAG
CAGATCGAAGACACATGCCTTGC
Found at i:32810767 original size:44 final size:44
Alignment explanation
Indices: 32810626--32810845 Score: 128
Period size: 44 Copynumber: 5.0 Consensus size: 44
32810616 TTGACAATTA
**
32810626 CAGATCTTATCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
1 CAGATCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
* * * *** * * * * *
32810670 TAGATCTTGCCTTCCTAC-ATCAACAGCGAAGCAGATCGAAGACA-
1 CAGATCTTGCCTCCCT-CGGT-TGTAGTGGAGCAGGTTGAAGATAG
32810714 CA-ATCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
1 CAGAT-CTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
* * *** * * * *
32810758 CAGATCTTGCCTTCCT-GCATCAACAGTGAAGCAGATCGAAGACA-
1 CAGATCTTGCCTCCCTCG-GT-TGTAGTGGAGCAGGTTGAAGATAG
* *
32810802 CATG-CCTTGCCACCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
1 CA-GATCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
32810846 TAGGCCTTGC
Statistics
Matches: 121, Mismatches: 44, Indels: 22
0.65 0.24 0.12
Matches are distributed among these distances:
43 35 0.29
44 50 0.41
45 36 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (44 bp):
CAGATCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAG
Found at i:32813894 original size:43 final size:42
Alignment explanation
Indices: 32813821--32813928 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
32813811 ATAAGTGCTA
* *
32813821 AACAAAAACCC-ATAAGGGTTGAATGAAAGCTAATAAAAG-CTG
1 AACAGAAACCCAATAAGGGTTAAATGAAAGCT--TAAAAGACTG
32813863 AACAGAAACCCAATAAGGGTTAAACTG-AAGCTTAAAAGATCTG
1 AACAGAAACCCAATAAGGGTTAAA-TGAAAGCTTAAAAGA-CTG
*
32813906 AACGGAAACCCAAT-AGGGTTAAA
1 AACAGAAACCCAATAAGGGTTAAA
32813929 ATATGAGTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
41 6 0.10
42 19 0.32
43 32 0.54
44 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (42 bp):
AACAGAAACCCAATAAGGGTTAAATGAAAGCTTAAAAGACTG
Found at i:32818010 original size:3 final size:3
Alignment explanation
Indices: 32818002--32818026 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32817992 ACAAGTAAAA
32818002 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
32818027 TATCATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:32832048 original size:45 final size:46
Alignment explanation
Indices: 32831954--32832098 Score: 125
Period size: 45 Copynumber: 3.2 Consensus size: 46
32831944 TAAAAGATGC
* * * **
32831954 TATGACATCATGATAAAGGTGATTTAAGACCATAGCTGAAAGATGT
1 TATGACATCATGATAAAGATGATGTAAAACCATAGCTGAAAGACAT
*
32832000 TATGACATCATGATATAA-ATGA-GTAAAACCATAGTTGAAAGACAT
1 TATGACATCATGATA-AAGATGATGTAAAACCATAGCTGAAAGACAT
* * * * * ** *
32832045 TATGGCATCATGGTAAATAGGA-CTAAGGCCATAGCTGAAAGACAC
1 TATGACATCATGATAAAGATGATGTAAAACCATAGCTGAAAGACAT
*
32832090 TATGGCATC
1 TATGACATC
32832099 CTGTGATAGT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
44 2 0.02
45 61 0.73
46 18 0.22
47 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.26
Consensus pattern (46 bp):
TATGACATCATGATAAAGATGATGTAAAACCATAGCTGAAAGACAT
Found at i:32836719 original size:32 final size:32
Alignment explanation
Indices: 32836656--32836883 Score: 212
Period size: 32 Copynumber: 7.2 Consensus size: 32
32836646 TGACTACAAC
* * * *
32836656 CCATAAGT-ACAGTAATGTGATTGGCACAAAG
1 CCATCAGTAACAGTGATATGATCGGCACAAAG
*
32836687 CCATCAGTAGCAGTGATATGATCGGCACAAAG
1 CCATCAGTAACAGTGATATGATCGGCACAAAG
* * * **
32836719 CCGTCAGTAACGGTAACGTGATCGGCACAAAG
1 CCATCAGTAACAGTGATATGATCGGCACAAAG
* * *
32836751 CCATTAGTAGCAGTGATATGATCGGCACACAG
1 CCATCAGTAACAGTGATATGATCGGCACAAAG
* * * *
32836783 CCATTAGTAACAGTGAAATGATCGGCTCACAG
1 CCATCAGTAACAGTGATATGATCGGCACAAAG
* *
32836815 CCATC-GATAACGGTAATATGATCGGCACAAAG
1 CCATCAG-TAACAGTGATATGATCGGCACAAAG
* *
32836847 CCATCAGTAA-TGAT-ACTATGATCAGCACAAAG
1 CCATCAGTAACAG-TGA-TATGATCGGCACAAAG
32836879 CCATC
1 CCATC
32836884 GGTAGCATCG
Statistics
Matches: 162, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
31 10 0.06
32 151 0.93
33 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (32 bp):
CCATCAGTAACAGTGATATGATCGGCACAAAG
Found at i:32836842 original size:96 final size:95
Alignment explanation
Indices: 32836656--32836883 Score: 262
Period size: 96 Copynumber: 2.4 Consensus size: 95
32836646 TGACTACAAC
* * * *
32836656 CCATAAGTACAGTAATGTGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACAAAGCC
1 CCATAAGTACAGTAATATGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACAAAGCC
* *
32836721 GTCAGTAACGGTAACGTGATCGGCACAAAG
66 ATCAGTAACGGTAACATGATCGGCACAAAG
* * * * * *
32836751 CCATTAGTAGCAGTGATATGATCGGCACACAGCCATTAGTAACAGTGAAATGATCGGCTCACAGC
1 CCATAAGTA-CAGTAATATGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACAAAGC
*
32836816 CATC-GATAACGGTAATATGATCGGCACAAAG
65 CATCAG-TAACGGTAACATGATCGGCACAAAG
* * *
32836847 CCATCAGTA-ATGATACTATGATCAGCACAAAGCCATC
1 CCATAAGTACA-G-TAATATGATCGGCACAAAGCCATC
32836884 GGTAGCATCG
Statistics
Matches: 110, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
94 1 0.01
95 10 0.09
96 99 0.90
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (95 bp):
CCATAAGTACAGTAATATGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACAAAGCC
ATCAGTAACGGTAACATGATCGGCACAAAG
Found at i:32836919 original size:26 final size:26
Alignment explanation
Indices: 32836890--32836943 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
32836880 CATCGGTAGC
*
32836890 ATCGCAGCAAAGCTGCCAGCAACAGT
1 ATCGCAGCAAAGCTACCAGCAACAGT
* *
32836916 ATCGCAGCAAAGCTACCAGTAATAGT
1 ATCGCAGCAAAGCTACCAGCAACAGT
32836942 AT
1 AT
32836944 ATGTGGCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (26 bp):
ATCGCAGCAAAGCTACCAGCAACAGT
Found at i:32836960 original size:27 final size:26
Alignment explanation
Indices: 32836925--32836994 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
32836915 TATCGCAGCA
* *
32836925 AAGCTACCAGTAATAGT-ATATGTGGCC
1 AAGCCACCAGTAACAGTGAT-TGTGG-C
32836952 AAGCCACCAGTAACAGTGATTGTGGC
1 AAGCCACCAGTAACAGTGATTGTGGC
32836978 AGAGCCACCAGT-ACAGT
1 A-AGCCACCAGTAACAGT
32836995 ACTTCTTCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.18
27 30 0.77
28 2 0.05
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (26 bp):
AAGCCACCAGTAACAGTGATTGTGGC
Found at i:32837143 original size:24 final size:24
Alignment explanation
Indices: 32837059--32837141 Score: 103
Period size: 24 Copynumber: 3.5 Consensus size: 24
32837049 TCATGCTCAG
32837059 AATCAGTCATTCAAATCACAGACA
1 AATCAGTCATTCAAATCACAGACA
* *
32837083 AATCAGTCATACCAATCACAGACA
1 AATCAGTCATTCAAATCACAGACA
* ** * *
32837107 AATTAAACATTTAAATCACATACA
1 AATCAGTCATTCAAATCACAGACA
32837131 AATCAGTCATT
1 AATCAGTCATT
32837142 TACACTCGAG
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.24
Consensus pattern (24 bp):
AATCAGTCATTCAAATCACAGACA
Found at i:32837190 original size:26 final size:27
Alignment explanation
Indices: 32837161--32837248 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
32837151 GGGGCAAAAT
32837161 AATCATTTAACCTCA-AGGGGCATTAC
1 AATCATTTAACCTCACAGGGGCATTAC
* * * * *
32837187 AATCATTTTACCTTATAGGGGTATTTC
1 AATCATTTAACCTCACAGGGGCATTAC
*
32837214 AGTCATTTAACC-CTACAGGGGCATTAC
1 AATCATTTAACCTC-ACAGGGGCATTAC
*
32837241 GATCATTT
1 AATCATTT
32837249 TACCCTATAG
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
26 13 0.27
27 35 0.73
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (27 bp):
AATCATTTAACCTCACAGGGGCATTAC
Found at i:32837250 original size:54 final size:54
Alignment explanation
Indices: 32837163--32837382 Score: 250
Period size: 54 Copynumber: 4.1 Consensus size: 54
32837153 GGCAAAATAA
* *
32837163 TCATTTAA-CCT-CAAGGGGCATTACAATCATTTTACCTTATAGGGGTATTTCAG
1 TCATTTAACCCTAC-AGGGGCATTACGATCATTTTACCCTATAGGGGTATTTCAG
* * *
32837216 TCATTTAACCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTGTTACGG
1 TCATTTAACCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTATTTCAG
* * * * * *
32837270 TCATTTTACCCTACAAGAGCATTACGGTTATTTTACCCTATAGGGGTATTTCGG
1 TCATTTAACCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTATTTCAG
* * * * *
32837324 T-ATTCT-ACCCTACGGGGGTATTTCGATCATTTTACCCTATAGGGGCATTTTAG
1 TCATT-TAACCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTATTTCAG
32837377 TCATTT
1 TCATTT
32837383 TATATCAGTT
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
53 50 0.35
54 90 0.64
55 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
TCATTTAACCCTACAGGGGCATTACGATCATTTTACCCTATAGGGGTATTTCAG
Found at i:32837373 original size:27 final size:27
Alignment explanation
Indices: 32837176--32837372 Score: 173
Period size: 27 Copynumber: 7.3 Consensus size: 27
32837166 TTTAACCTCA
* *
32837176 AGGGGCATTACAATCATTTTACCTTAT
1 AGGGGCATTACGATCATTTTACCCTAT
* * * *
32837203 AGGGGTATTTC-AGTCATTTAACCCTAC
1 AGGGGCATTACGA-TCATTTTACCCTAT
32837230 AGGGGCATTACGATCATTTTACCCTAT
1 AGGGGCATTACGATCATTTTACCCTAT
** * *
32837257 AGGGGTGTTACGGTCATTTTACCCTAC
1 AGGGGCATTACGATCATTTTACCCTAT
* * * *
32837284 AAGAGCATTACGGTTATTTTACCCTAT
1 AGGGGCATTACGATCATTTTACCCTAT
* * * * *
32837311 AGGGGTATTTCGGT-ATTCTACCCTAC
1 AGGGGCATTACGATCATTTTACCCTAT
* * *
32837337 GGGGGTATTTCGATCATTTTACCCTAT
1 AGGGGCATTACGATCATTTTACCCTAT
32837364 AGGGGCATT
1 AGGGGCATT
32837373 TTAGTCATTT
Statistics
Matches: 136, Mismatches: 31, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
26 23 0.17
27 112 0.82
28 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
AGGGGCATTACGATCATTTTACCCTAT
Found at i:32857139 original size:32 final size:32
Alignment explanation
Indices: 32857096--32857223 Score: 166
Period size: 32 Copynumber: 4.0 Consensus size: 32
32857086 AGCCACAAAT
*
32857096 ACAGTAATATGATTGGCACAAAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
** * * * *
32857128 GTAGTGATATGACCGGTACACAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
*
32857160 ACAGAAATATGATCGGCACAAAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
* *
32857192 ACGGTAATATGATCAGCACAAAGCCATCAGTA
1 ACAGTAATATGATCGGCACAAAGCCATCAGTA
32857224 GCATCACAGC
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 79 1.00
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (32 bp):
ACAGTAATATGATCGGCACAAAGCCATCAGTA
Found at i:32857300 original size:27 final size:27
Alignment explanation
Indices: 32857258--32857330 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
32857248 CAGTATCGCA
* * *
32857258 GCAAAGCTACCCGTAATAGT-ATATGTG
1 GCAAAGCCACCAGTAACAGTGAT-TGTG
*
32857285 GCCAAGCCACCAGTAACAGTGATTGTG
1 GCAAAGCCACCAGTAACAGTGATTGTG
32857312 GCAAAGCCACCAGT-ACAGT
1 GCAAAGCCACCAGTAACAGT
32857331 ACTTCCTCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 33 0.82
28 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTGATTGTG
Found at i:32857426 original size:24 final size:24
Alignment explanation
Indices: 32857395--32857452 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
32857385 CCATGCTCAG
32857395 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
32857419 AATTAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
32857443 AATCAGTCAT
1 AATCAGTCAT
32857453 TTACACTCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.21
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:32857509 original size:27 final size:27
Alignment explanation
Indices: 32857479--32857702 Score: 139
Period size: 27 Copynumber: 8.3 Consensus size: 27
32857469 AAATAGTCAA
* *
32857479 TTACCCTCTAGAGGCATTACGGTCATT
1 TTACCCTATAGGGGCATTACGGTCATT
* * * *** *
32857506 TTACCTTATAGGAGTATTTTAGCCATT
1 TTACCCTATAGGGGCATTACGGTCATT
* * * *
32857533 TAACCCTATTGGGGTATTACGATCATT
1 TTACCCTATAGGGGCATTACGGTCATT
*
32857560 TTACCCTATAGGGGCGTTACGGTCATT
1 TTACCCTATAGGGGCATTACGGTCATT
** ** * * *
32857587 TTACCCTAT-GACAGTTTTTCGATTATT
1 TTACCCTATAG-GGGCATTACGGTCATT
* * *
32857614 TTACCCTACAGGGGTATTACAGTCATT
1 TTACCCTATAGGGGCATTACGGTCATT
* * * *
32857641 TTACCTTACAGGGCCATTACGATCATT
1 TTACCCTATAGGGGCATTACGGTCATT
*
32857668 TTACCCTAT-GAGGGTA-TATCGGTCATT
1 TTACCCTATAG-GGGCATTA-CGGTCATT
32857695 TTACCCTA
1 TTACCCTA
32857703 CGAGAGTATT
Statistics
Matches: 145, Mismatches: 48, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
26 4 0.03
27 140 0.97
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (27 bp):
TTACCCTATAGGGGCATTACGGTCATT
Found at i:32857696 original size:81 final size:81
Alignment explanation
Indices: 32857493--32857703 Score: 228
Period size: 81 Copynumber: 2.6 Consensus size: 81
32857483 CCTCTAGAGG
* ** * * **
32857493 CATTACGGTCATTTTACCTTAT-AGGAGTATTTTAGCCATTTAACCCTATTGGGGTATTACGATC
1 CATTACGGTCATTTTACCCTATGAGG-GTATTTCGGTCATTTTACCCTACAGGGGTATTACGATC
* *
32857557 ATTTTACCCTATAGGGG
65 ATTTTACCCTACAGGGC
* ** * * *
32857574 CGTTACGGTCATTTTACCCTATGACAGTTTTTCGATTATTTTACCCTACAGGGGTATTAC-AGTC
1 CATTACGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTACAGGGGTATTACGA-TC
*
32857638 ATTTTACCTTACAGGGC
65 ATTTTACCCTACAGGGC
* *
32857655 CATTACGATCATTTTACCCTATGAGGGTATATCGGTCATTTTACCCTAC
1 CATTACGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTAC
32857704 GAGAGTATTT
Statistics
Matches: 104, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
80 1 0.01
81 102 0.98
82 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (81 bp):
CATTACGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTACAGGGGTATTACGATCA
TTTTACCCTACAGGGC
Found at i:32857711 original size:27 final size:27
Alignment explanation
Indices: 32857544--32857749 Score: 143
Period size: 27 Copynumber: 7.7 Consensus size: 27
32857534 AACCCTATTG
* * *
32857544 GGGTATTACGATCATTTTACCCTA-TA
1 GGGTATTTCGGTCATTTTACCCTACGA
** * *
32857570 GGGGCGTTACGGTCATTTTACCCTATGA
1 -GGGTATTTCGGTCATTTTACCCTACGA
** * * *
32857598 CAGTTTTTCGATTATTTTACCCTAC-A
1 GGGTATTTCGGTCATTTTACCCTACGA
* * *
32857624 GGGGTATTACAGTCATTTTACCTTAC-A
1 -GGGTATTTCGGTCATTTTACCCTACGA
* * * *
32857651 GGGCCATTACGATCATTTTACCCTATGA
1 GGG-TATTTCGGTCATTTTACCCTACGA
*
32857679 GGGTATATCGGTCATTTTACCCTACGA
1 GGGTATTTCGGTCATTTTACCCTACGA
* *
32857706 GAGTATTTTGGTCATTTTACCC-ATCGA
1 GGGTATTTCGGTCATTTTACCCTA-CGA
32857733 GGGTATTTCGGT-ATTTT
1 GGGTATTTCGGTCATTTT
32857750 TACAAATATT
Statistics
Matches: 139, Mismatches: 35, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
26 10 0.07
27 124 0.89
28 5 0.04
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTACGA
Found at i:32857712 original size:81 final size:80
Alignment explanation
Indices: 32857546--32857727 Score: 195
Period size: 81 Copynumber: 2.2 Consensus size: 80
32857536 CCCTATTGGG
* * * * * * *
32857546 GTATTACGATCATTTTACCCTATAGGGGCGTTACGGTCATTTTACCCTATGACAGTTTTTCGATT
1 GTATTACG-TCATTTTACCCTACAGGGCCATTACGATCATTTTACCCTATGACAGTATATCGATC
*
32857611 ATTTTACCCTACAGGG
65 ATTTTACCCTACAGGA
* ** *
32857627 GTATTACAGTCATTTTACCTTACAGGGCCATTACGATCATTTTACCCTATGAGGGTATATCGGTC
1 GTATTAC-GTCATTTTACCCTACAGGGCCATTACGATCATTTTACCCTATGACAGTATATCGATC
32857692 ATTTTACCCTAC-GAGA
65 ATTTTACCCTACAG-GA
**
32857708 GTATTTTGGTCATTTTACCC
1 GTA-TTACGTCATTTTACCC
32857728 ATCGAGGGTA
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 1 0.01
81 79 0.95
82 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (80 bp):
GTATTACGTCATTTTACCCTACAGGGCCATTACGATCATTTTACCCTATGACAGTATATCGATCA
TTTTACCCTACAGGA
Found at i:32857721 original size:54 final size:55
Alignment explanation
Indices: 32857553--32857749 Score: 169
Period size: 54 Copynumber: 3.7 Consensus size: 55
32857543 GGGGTATTAC
* * *
32857553 GATCATTTTACCCTATAGGGGCGT-TA-CGGTCATTTTACCCTATGACAGT-TTTT
1 GATCATTTTACCCTATAGAGG-GTATATCGGTCATTTTACCCTACGAGAGTATTTT
* * * * * * **
32857606 CGATTATTTTACCCTACAG-GGGTAT-TACAGTCATTTTACCTTAC-AGGGCCATTAC
1 -GATCATTTTACCCTATAGAGGGTATAT-CGGTCATTTTACCCTACGAGAG-TATTTT
32857661 GATCATTTTACCCTAT-GAGGGTATATCGGTCATTTTACCCTACGAGAGTATTTT
1 GATCATTTTACCCTATAGAGGGTATATCGGTCATTTTACCCTACGAGAGTATTTT
* * *
32857715 GGTCATTTTACCC-ATCGAGGGTATTTCGGT-ATTTT
1 GATCATTTTACCCTATAGAGGGTATATCGGTCATTTT
32857750 TACAAATATT
Statistics
Matches: 114, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
52 2 0.02
53 13 0.11
54 93 0.82
55 6 0.05
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (55 bp):
GATCATTTTACCCTATAGAGGGTATATCGGTCATTTTACCCTACGAGAGTATTTT
Found at i:32861338 original size:22 final size:22
Alignment explanation
Indices: 32861295--32861359 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
32861285 TGTCAGTAAC
* *
32861295 CAGAATGGCTA-AGAGCCGTAAA
1 CAGAATAGCTACA-AGCCATAAA
* * *
32861317 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTACAAGCCATAAA
*
32861339 CAGAATGGCTACAAGCCATAA
1 CAGAATAGCTACAAGCCATAA
32861360 GTACAGTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (22 bp):
CAGAATAGCTACAAGCCATAAA
Found at i:32861413 original size:32 final size:32
Alignment explanation
Indices: 32861351--32861458 Score: 128
Period size: 32 Copynumber: 3.4 Consensus size: 32
32861341 GAATGGCTAC
* **
32861351 AAGCCATAAGTA-CAGTAATATGATTAGCACA
1 AAGCCATCAGTAGCAGTAATATGATCGGCACA
* *
32861382 AAGCCATCAGTAGCAGTGATATGACCGGCACA
1 AAGCCATCAGTAGCAGTAATATGATCGGCACA
* * * *
32861414 CAGCCATCAGCAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAGCAGTAATATGATCGGCACA
32861446 AAGCCATCAGTAG
1 AAGCCATCAGTAG
32861459 TATTGCAGCA
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
31 11 0.18
32 51 0.82
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGATCGGCACA
Found at i:32861512 original size:26 final size:26
Alignment explanation
Indices: 32861456--32861513 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
32861446 AAGCCATCAG
*
32861456 TAGTATTGCAGCAAAGCTGCCAGCAA
1 TAGTATCGCAGCAAAGCTGCCAGCAA
* * *
32861482 CAGTATCGCAGCAAAGCTGCCCGTAA
1 TAGTATCGCAGCAAAGCTGCCAGCAA
32861508 TAGTAT
1 TAGTAT
32861514 ATGTGGCCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (26 bp):
TAGTATCGCAGCAAAGCTGCCAGCAA
Found at i:32861686 original size:24 final size:24
Alignment explanation
Indices: 32861602--32861683 Score: 92
Period size: 24 Copynumber: 3.4 Consensus size: 24
32861592 TCATGCTCAG
*
32861602 AATCAGTCATACAAATCACAGACA
1 AATCAATCATACAAATCACAGACA
* *
32861626 AATCAATCATACCAATCACAGACC
1 AATCAATCATACAAATCACAGACA
* ** *
32861650 AATAAATCATTTAAATCATAGACA
1 AATCAATCATACAAATCACAGACA
*
32861674 AATCAGTCAT
1 AATCAATCAT
32861684 TTACACTCGA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.49, C:0.23, G:0.06, T:0.22
Consensus pattern (24 bp):
AATCAATCATACAAATCACAGACA
Found at i:32861725 original size:26 final size:27
Alignment explanation
Indices: 32861673--32861725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
32861663 AATCATAGAC
*
32861673 AAATCAGTCATTTACACTCGAGAGGCA
1 AAATCAGTCATTTACACTCAAGAGGCA
* *
32861700 AAAT-AGTCATTTACCCTCAAGGGGCA
1 AAATCAGTCATTTACACTCAAGAGGCA
32861726 TTACGATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATCAGTCATTTACACTCAAGAGGCA
Found at i:32861749 original size:27 final size:27
Alignment explanation
Indices: 32861721--32861903 Score: 109
Period size: 27 Copynumber: 6.8 Consensus size: 27
32861711 TACCCTCAAG
32861721 GGGCATTACGATCATTTTACCTTAT-A
1 GGGCATTACGATCATTTTACCTTATAA
* * * * *
32861747 GGGATATTTCAATCATTTAACCCTATAA
1 GGG-CATTACGATCATTTTACCTTATAA
* * * * *
32861775 AGGTATTATGGTCATTTTACCTTACAA
1 GGGCATTACGATCATTTTACCTTATAA
* **
32861802 GGGCATTACGATCATTTTACCCTACGA
1 GGGCATTACGATCATTTTACCTTATAA
* * * * **
32861829 GGGTATTTCAATCATTTTACCCTACGA
1 GGGCATTACGATCATTTTACCTTATAA
* * *
32861856 GGGTATTTCGATCATTTTATCCAT-TAA
1 GGGCATTACGATCATTTTA-CCTTATAA
* * *
32861883 GGGTATTTCGATAATTTTACC
1 GGGCATTACGATCATTTTACC
32861904 CATCGAGGGT
Statistics
Matches: 127, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 5 0.04
27 116 0.91
28 6 0.05
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (27 bp):
GGGCATTACGATCATTTTACCTTATAA
Found at i:32861834 original size:54 final size:54
Alignment explanation
Indices: 32861731--32861957 Score: 167
Period size: 54 Copynumber: 4.2 Consensus size: 54
32861721 GGGCATTACG
* * * * *
32861731 ATCATTTTACCTTA-TAGGGATATTTCAATCATTTAACCCTATAAAGGTATTAT-G
1 ATCATTTTACCTTACAAGGG-TATTTCGATCATTTTACCCTACAAAGGTATT-TCA
* * * * *
32861785 GTCATTTTACCTTACAAGGGCATTACGATCATTTTACCCTACGAGGGTATTTCA
1 ATCATTTTACCTTACAAGGGTATTTCGATCATTTTACCCTACAAAGGTATTTCA
* * * * * *
32861839 ATCATTTTACCCTACGAGGGTATTTCGATCATTTTATCC-ATTAAGGGTATTTCG
1 ATCATTTTACCTTACAAGGGTATTTCGATCATTTTACCCTA-CAAAGGTATTTCA
* * * * * *
32861893 ATAATTTTACC-CATCGAGGGTATTTCGGTCATTTTACCC-ATCGAGGGTATTTCA
1 ATCATTTTACCTTA-CAAGGGTATTTCGATCATTTTACCCTA-CAAAGGTATTTCA
*
32861947 GTCATTTTACC
1 ATCATTTTACC
32861958 CATCGAGTGT
Statistics
Matches: 141, Mismatches: 28, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
53 3 0.02
54 134 0.95
55 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (54 bp):
ATCATTTTACCTTACAAGGGTATTTCGATCATTTTACCCTACAAAGGTATTTCA
Found at i:32861861 original size:81 final size:80
Alignment explanation
Indices: 32861705--32861957 Score: 266
Period size: 81 Copynumber: 3.1 Consensus size: 80
32861695 AGGCAAAATA
* * * *
32861705 GTCA-TTTACCCTCAAGGGGCATTACGATCATTTTACCTTA-TAGGGATATTTCAATCATTTAAC
1 GTCATTTTACCTTCAA-GGGCATTACGATCATTTTACCCTACGAGGG-TATTTCAATCATTTTAC
** *
32861768 CCTATAAAGGTATTAT-G
64 CCTACGAGGGTATT-TCG
32861785 GTCATTTTACCTTACAAGGGCATTACGATCATTTTACCCTACGAGGGTATTTCAATCATTTTACC
1 GTCATTTTACCTT-CAAGGGCATTACGATCATTTTACCCTACGAGGGTATTTCAATCATTTTACC
32861850 CTACGAGGGTATTTCG
65 CTACGAGGGTATTTCG
* * * * **
32861866 ATCATTTTATCCATT-AAGGGTATTTCGATAATTTTACCC-ATCGAGGGTATTTCGGTCATTTTA
1 GTCATTTTA-CC-TTCAAGGGCATTACGATCATTTTACCCTA-CGAGGGTATTTCAATCATTTTA
*
32861929 CCC-ATCGAGGGTATTTCA
63 CCCTA-CGAGGGTATTTCG
32861947 GTCATTTTACC
1 GTCATTTTACC
32861958 CATCGAGTGT
Statistics
Matches: 150, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
80 9 0.06
81 130 0.87
82 9 0.06
83 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (80 bp):
GTCATTTTACCTTCAAGGGCATTACGATCATTTTACCCTACGAGGGTATTTCAATCATTTTACCC
TACGAGGGTATTTCG
Found at i:32861906 original size:27 final size:27
Alignment explanation
Indices: 32861801--32862037 Score: 273
Period size: 27 Copynumber: 8.8 Consensus size: 27
32861791 TTACCTTACA
* *
32861801 AGGGCATTACGATCATTTTACCC-TACG
1 AGGGTATTTCGATCATTTTACCCAT-CG
*
32861828 AGGGTATTTCAATCATTTTACCC-TACG
1 AGGGTATTTCGATCATTTTACCCAT-CG
* **
32861855 AGGGTATTTCGATCATTTTATCCATTA
1 AGGGTATTTCGATCATTTTACCCATCG
*
32861882 AGGGTATTTCGATAATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
*
32861909 AGGGTATTTCGGTCATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
32861936 AGGGTATTTC-AGTCATTTTACCCATCG
1 AGGGTATTTCGA-TCATTTTACCCATCG
* * * * *
32861963 AGTGTATTTTGGTAATTTAACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
* * *
32861990 AGGGTATTTTGGTCATTATACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
*
32862017 AGGGTATTTCGATAATTTTAC
1 AGGGTATTTCGATCATTTTAC
32862038 AAATATTGGG
Statistics
Matches: 180, Mismatches: 27, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
27 179 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATCATTTTACCCATCG
Found at i:32866824 original size:20 final size:20
Alignment explanation
Indices: 32866801--32866853 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
32866791 CTCAAATAAA
32866801 CTAAAGATGAGCTAAATGAG
1 CTAAAGATGAGCTAAATGAG
***
32866821 CT-AAGAATGAGCTCGTTGAG
1 CTAAAG-ATGAGCTAAATGAG
*
32866841 CTAAAGTTGAGCT
1 CTAAAGATGAGCT
32866854 GAGTGAGCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 3 0.11
20 21 0.78
21 3 0.11
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (20 bp):
CTAAAGATGAGCTAAATGAG
Found at i:32869856 original size:40 final size:40
Alignment explanation
Indices: 32869812--32869951 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
32869802 AACACACCAG
*
32869812 TTTGACATCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
* * * * **
32869852 TTTGACACCCATTGTCTCATTGGCTAAACCGAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
* * ** *
32869890 TTAG-CACCTAGTGCCTCATCAAAT-ATATCTAAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAAT-TC-GAAGTAATAA
*
32869930 TTTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
32869952 ACTTGAAGTT
Statistics
Matches: 73, Mismatches: 22, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
36 1 0.01
37 14 0.19
38 9 0.12
39 2 0.03
40 33 0.45
41 14 0.19
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
Found at i:32870890 original size:25 final size:23
Alignment explanation
Indices: 32870834--32870890 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
32870824 TGCTTTCTCA
* *
32870834 TTTCTTTTTTTCTCTTTTTCCTT
1 TTTCTTTTCTTCTCTGTTTCCTT
*
32870857 TTTCGTTTTGCTTCTCTGTTTCTTT
1 TTTC-TTTT-CTTCTCTGTTTCCTT
32870882 CTTTCTTTT
1 -TTTCTTTT
32870891 TCTATTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 16 0.57
26 4 0.14
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (23 bp):
TTTCTTTTCTTCTCTGTTTCCTT
Found at i:32873944 original size:8 final size:8
Alignment explanation
Indices: 32873931--32873992 Score: 58
Period size: 8 Copynumber: 8.0 Consensus size: 8
32873921 TCTTATCATT
32873931 ATAATATA
1 ATAATATA
32873939 ATAATATA
1 ATAATATA
*
32873947 TATACT-TA
1 -ATAATATA
32873955 ATAAT-TA
1 ATAATATA
*
32873962 A-GATATA
1 ATAATATA
*
32873969 ATATTATA
1 ATAATATA
*
32873977 ATATTATA
1 ATAATATA
32873985 ATAATATA
1 ATAATATA
32873993 TATTTTATCT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
6 2 0.04
7 10 0.22
8 29 0.64
9 4 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (8 bp):
ATAATATA
Found at i:32877781 original size:27 final size:27
Alignment explanation
Indices: 32877720--32877781 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
32877710 TATTCTTTTA
* *
32877720 AAAATAATATTATATTATATTAATATT
1 AAAATATTTTTATATTATATTAATATT
*
32877747 TAAATATTTTTATCATTA-ATTAAT-TT
1 AAAATATTTTTAT-ATTATATTAATATT
32877773 AAAAGTATT
1 AAAA-TATT
32877782 ATTTTTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.17
27 20 0.69
28 4 0.14
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
AAAATATTTTTATATTATATTAATATT
Found at i:32879509 original size:15 final size:17
Alignment explanation
Indices: 32879478--32879509 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
32879468 ATTCTTTGCA
32879478 CAAAAACCATCTTTATT
1 CAAAAACCATCTTTATT
32879495 CAAAAA-CAT-TTTATT
1 CAAAAACCATCTTTATT
32879510 TGTTTTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (17 bp):
CAAAAACCATCTTTATT
Found at i:32881781 original size:3 final size:3
Alignment explanation
Indices: 32881773--32881800 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32881763 AGATGAATCT
32881773 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
32881801 ATTCTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:32885742 original size:14 final size:15
Alignment explanation
Indices: 32885712--32885775 Score: 60
Period size: 14 Copynumber: 4.3 Consensus size: 15
32885702 TAATTTAAAT
*
32885712 TTTATAAATTATTATA
1 TTTATATATT-TTATA
32885728 TTTAT-TATTTTATA
1 TTTATATATTTTATA
*
32885742 TTTATATATTATATA
1 TTTATATATTTTATA
* * *
32885757 TATAAATA-ATTATA
1 TTTATATATTTTATA
32885771 TTTAT
1 TTTAT
32885776 TTAATATAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 17 0.44
15 17 0.44
16 5 0.13
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTATATATTTTATA
Found at i:32885782 original size:25 final size:28
Alignment explanation
Indices: 32885754--32885808 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
32885744 TATATATTAT
*
32885754 ATATATAAAT-AATT-A-TATTTATTTA
1 ATATAAAAATAAATTGAGTATTTATTTA
32885779 ATATAAAAATAAATTGAGGTATTTATTTA
1 ATATAAAAATAAATTGA-GTATTTATTTA
32885808 A
1 A
32885809 ATGTGTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 9 0.36
26 4 0.16
27 1 0.04
29 11 0.44
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (28 bp):
ATATAAAAATAAATTGAGTATTTATTTA
Found at i:32885783 original size:29 final size:29
Alignment explanation
Indices: 32885737--32885792 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
32885727 ATTTATTATT
* * *
32885737 TTATATTTATATATTATATATATAAATAA
1 TTATATTTATATAATATAAAAATAAATAA
*
32885766 TTATATTTATTTAATATAAAAATAAAT
1 TTATATTTATATAATATAAAAATAAAT
32885793 TGAGGTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (29 bp):
TTATATTTATATAATATAAAAATAAATAA
Found at i:32887395 original size:68 final size:69
Alignment explanation
Indices: 32887276--32887412 Score: 204
Period size: 68 Copynumber: 2.0 Consensus size: 69
32887266 AAGTGCATTG
* * * * * * *
32887276 TTTTTATTTTGATCACTTTTTTTCTTTTAATTTGGTTATTATTGTTAAAATAATTGATTAAATTG
1 TTTTTATTTTGATCACATTTATTCTTTTAATTTAGTTACTACTGCTAAAATAATTGATCAAATTG
32887341 ATTA
66 ATTA
32887345 TTTTTATTTTGATCACATTTATT-TTTTAATTTAGTTACTACTGCTAAAATAATTGATCAAATTG
1 TTTTTATTTTGATCACATTTATTCTTTTAATTTAGTTACTACTGCTAAAATAATTGATCAAATTG
32887409 ATTA
66 ATTA
32887413 CAATGCCATT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 40 0.66
69 21 0.34
ACGTcount: A:0.30, C:0.07, G:0.08, T:0.55
Consensus pattern (69 bp):
TTTTTATTTTGATCACATTTATTCTTTTAATTTAGTTACTACTGCTAAAATAATTGATCAAATTG
ATTA
Found at i:32888349 original size:16 final size:17
Alignment explanation
Indices: 32888300--32888349 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
32888290 CACTGTTCAT
*
32888300 TTTTTTGTTCATTCTTC
1 TTTTTTGTTCATTTTTC
* *
32888317 TTTTTCTCTTTATTTTTC
1 TTTTT-TGTTCATTTTTC
32888335 -TTTTTGTTCATTTTT
1 TTTTTTGTTCATTTTT
32888350 TTCCTCTCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 9 0.33
17 9 0.33
18 9 0.33
ACGTcount: A:0.06, C:0.14, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTTTTGTTCATTTTTC
Found at i:32891452 original size:6 final size:7
Alignment explanation
Indices: 32891436--32891460 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32891426 AATTTGAAAC
32891436 AAAAAGA
1 AAAAAGA
32891443 AAAAAGA
1 AAAAAGA
32891450 AAAAAGA
1 AAAAAGA
32891457 AAAA
1 AAAA
32891461 TTCTGCAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:32897000 original size:23 final size:23
Alignment explanation
Indices: 32896974--32897060 Score: 165
Period size: 23 Copynumber: 3.8 Consensus size: 23
32896964 AGTTAGAAAT
32896974 GTGAAGAGACTTGAATATGAAGA
1 GTGAAGAGACTTGAATATGAAGA
*
32896997 GTGAAGAGACTTCAATATGAAGA
1 GTGAAGAGACTTGAATATGAAGA
32897020 GTGAAGAGACTTGAATATGAAGA
1 GTGAAGAGACTTGAATATGAAGA
32897043 GTGAAGAGACTTGAATAT
1 GTGAAGAGACTTGAATAT
32897061 AAAAAGTTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.43, C:0.06, G:0.29, T:0.23
Consensus pattern (23 bp):
GTGAAGAGACTTGAATATGAAGA
Found at i:32898526 original size:405 final size:401
Alignment explanation
Indices: 32897779--32898585 Score: 1247
Period size: 405 Copynumber: 2.0 Consensus size: 401
32897769 TAACGTGAAG
* *
32897779 ACCAAAATGGAGAGTAAAAATTGGGAAAGGAAAGAAGAAAACGAGAAAACTTGGAAGTGGGAAAA
1 ACCAAAATAGAGAGTAAAAATTGGGAAAGAAAAGAAGAAAACGAGAAAACTTGGAAGTGGGAAAA
*
32897844 TAAGACGGTAAGAGAAGGAGACTTTTGGGAAAATTTTCAAAAAAGAATTTTAGAAAAACTACCCA
66 TAAGACGATAAGAGAAGGAGACTTTTGGGAAAATTTTCAAAAAAGAATTTTAGAAAAACTACCCA
* *
32897909 TATCCCCACTAAATCTAGTTAGTTATTCTTACCAGATTTCCCTTAAAATTCAAATTCAACACAAC
131 TATCCCCACTAAATCTAGTTAGTTATTCTTACCAAATTTCCCTCAAAATTCAAATTCAACACAAC
* * * *
32897974 TTGTATCCCCTTTGGCGACACAGACAGAGAAAAACAATAAGAATTTTGTTTTGCACGCTCAAGAT
196 TTCTACCCCCTTTGGCAACACAGACAGAGAAAAACAATAAGAATTTTGTTTTGCACACTCAAGAT
* * * *
32898039 TTGAACACAATACCTTTGAGTAAATTAAAGCCTTACTACTGAACCAACAAATTCATTTTTGTCAA
261 TTGAACACAATAACTTTGAGTAAATTAAAGCCTTACCACTAAACCAACAAACTCATTTTTGTCAA
* * *
32898104 TAAACACTCAGAATTTAAAATAAGTCGACTCTTCTAAGTTAGAGGTTGGGACAAAAGTAATAAAA
326 TAAACACTCAAAATTTAAAATAAGCCAACTCTTCTAAGTTAGAGGTTGGGACAAAAGTAATAAAA
32898169 ATTTAAGGGAA
391 ATTTAAGGGAA
* * *
32898180 ACCAAAATAGAGAGTAAAAATTGGGAAAGAAAATAAGAAAATGAGAAAATTTGGAAGTGGGAAAA
1 ACCAAAATAGAGAGTAAAAATTGGGAAAGAAAAGAAGAAAACGAGAAAACTTGGAAGTGGGAAAA
* * * *
32898245 TAAGACGATAAGAGAGGGAGGCTTTTGGGAAATTTTTCAAAAAAAAAATAATTTTAGAAAAACTA
66 TAAGACGATAAGAGAAGGAGACTTTTGGGAAAATTTTC----AAAAAAGAATTTTAGAAAAACTA
* *
32898310 CCCATATCCTCACTAAATCTAGTTAGTTATTCTTACCAAATTTTCCC-CAGAATTCAAATTCAAC
127 CCCATATCCCCACTAAATCTAGTTAGTTATTCTTACCAAA-TTTCCCTCAAAATTCAAATTCAAC
*
32898374 CCAACTTCTACCCCCTTTGGCAACACAGACAGAGAAAAACAATAAGAATTTTGTTTTGCACACTC
191 ACAACTTCTACCCCCTTTGGCAACACAGACAGAGAAAAACAATAAGAATTTTGTTTTGCACACTC
* * * **
32898439 AAGATTTGAACAGAATAACTTTGATTAAATTAAAGCCTTACCATTAAACCAGTAAACTCATTTTT
256 AAGATTTGAACACAATAACTTTGAGTAAATTAAAGCCTTACCACTAAACCAACAAACTCATTTTT
* * * *
32898504 TTCAATCAACACTTAAAATTTAAAATAAGCCAACTCTTCTAGGTTAGAGGTTGGGACAAAAGTAA
321 GTCAATAAACACTCAAAATTTAAAATAAGCCAACTCTTCTAAGTTAGAGGTTGGGACAAAAGTAA
32898569 TAAAAATTTAAGGGAA
386 TAAAAATTTAAGGGAA
32898585 A
1 A
32898586 ATATTTGAAT
Statistics
Matches: 366, Mismatches: 35, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
401 94 0.26
405 266 0.73
406 6 0.02
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (401 bp):
ACCAAAATAGAGAGTAAAAATTGGGAAAGAAAAGAAGAAAACGAGAAAACTTGGAAGTGGGAAAA
TAAGACGATAAGAGAAGGAGACTTTTGGGAAAATTTTCAAAAAAGAATTTTAGAAAAACTACCCA
TATCCCCACTAAATCTAGTTAGTTATTCTTACCAAATTTCCCTCAAAATTCAAATTCAACACAAC
TTCTACCCCCTTTGGCAACACAGACAGAGAAAAACAATAAGAATTTTGTTTTGCACACTCAAGAT
TTGAACACAATAACTTTGAGTAAATTAAAGCCTTACCACTAAACCAACAAACTCATTTTTGTCAA
TAAACACTCAAAATTTAAAATAAGCCAACTCTTCTAAGTTAGAGGTTGGGACAAAAGTAATAAAA
ATTTAAGGGAA
Found at i:32898871 original size:21 final size:20
Alignment explanation
Indices: 32898845--32898884 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32898835 GCTTTTTGAG
*
32898845 CTCAATTCAGCTTGTTTCCAA
1 CTCAA-TCAGCTCGTTTCCAA
*
32898866 CTCAATGAGCTCGTTTCCA
1 CTCAATCAGCTCGTTTCCA
32898885 TCTTTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (20 bp):
CTCAATCAGCTCGTTTCCAA
Found at i:32900655 original size:43 final size:42
Alignment explanation
Indices: 32900580--32900718 Score: 143
Period size: 43 Copynumber: 3.2 Consensus size: 42
32900570 ATGATTAAAG
* *
32900580 TTTATAAAAATTATAAAAAAAATTAATTAAAAACCATAAAAT
1 TTTATAAAAATTATAAAAAAAATTAACTAAAAACCATAAAAA
* *
32900622 TTTATAAAACTTATAAAAAATAATTTACTAAAAACCATAAAAA
1 TTTATAAAAATTATAAAAAA-AATTAACTAAAAACCATAAAAA
* * ** * ** *
32900665 TGTATAAAAAATAATTATTAAAAATGAGTTAAAAACCATAAAAT
1 TTTAT-AAAAATTA-TAAAAAAAATTAACTAAAAACCATAAAAA
32900709 TTTATAAAAA
1 TTTATAAAAA
32900719 AATTATTAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 19 0.24
43 28 0.35
44 27 0.34
45 5 0.06
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (42 bp):
TTTATAAAAATTATAAAAAAAATTAACTAAAAACCATAAAAA
Found at i:32900662 original size:33 final size:33
Alignment explanation
Indices: 32900625--32900688 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
32900615 ATAAAATTTT
*
32900625 ATAAAACT-TATAAAAAATAATTTACTAAAAACC
1 ATAAAAATGTATAAAAAATAA-TTACTAAAAACC
*
32900658 ATAAAAATGTATAAAAAATAATTATTAAAAA
1 ATAAAAATGTATAAAAAATAATTACTAAAAA
32900689 TGAGTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 16 0.57
34 12 0.43
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (33 bp):
ATAAAAATGTATAAAAAATAATTACTAAAAACC
Found at i:32900894 original size:20 final size:21
Alignment explanation
Indices: 32900858--32900910 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
32900848 TTAAAAATTG
* *
32900858 TATAATTTTAAT-GATTTT-T
1 TATAATTTTTATAAATTTTGT
32900877 TATAATTTTTATAAATTTTGT
1 TATAATTTTTATAAATTTTGT
*
32900898 TAT-GTTTTTATAA
1 TATAATTTTTATAA
32900911 TTCTAGTCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 11 0.38
20 14 0.48
21 4 0.14
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
TATAATTTTTATAAATTTTGT
Found at i:32900895 original size:19 final size:19
Alignment explanation
Indices: 32900846--32900895 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
32900836 TATCTAATAC
*
32900846 TTTTAA-AAA-TTGTATAA
1 TTTTAATAAATTTTTATAA
* *
32900863 TTTTAATGATTTTTTATAA
1 TTTTAATAAATTTTTATAA
*
32900882 TTTTTATAAATTTT
1 TTTTAATAAATTTT
32900896 GTTATGTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 6 0.24
18 1 0.04
19 18 0.72
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTAATAAATTTTTATAA
Found at i:32907214 original size:9 final size:9
Alignment explanation
Indices: 32907200--32907229 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
32907190 ACGAATTTAG
32907200 AAAAAATAA
1 AAAAAATAA
32907209 AAAAAATAAA
1 AAAAAAT-AA
32907219 AAAAAATAA
1 AAAAAATAA
32907228 AA
1 AA
32907230 TCAGGACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAATAA
Found at i:32907220 original size:10 final size:10
Alignment explanation
Indices: 32907200--32907229 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
32907190 ACGAATTTAG
32907200 AAAAAAT-AA
1 AAAAAATAAA
32907209 AAAAAATAAA
1 AAAAAATAAA
32907219 AAAAAATAAA
1 AAAAAATAAA
32907229 A
1 A
32907230 TCAGGACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:32908854 original size:132 final size:132
Alignment explanation
Indices: 32908688--32909938 Score: 1784
Period size: 132 Copynumber: 9.5 Consensus size: 132
32908678 ATAAGAATAC
* * * *
32908688 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
* * *
32908753 ACTACTGCTTAGGGGGACAAGATCTGAAATCTTCAGTCTATTCCACTGCTGCCCAGGG-AGATAG
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAG-TAG
32908817 AAT
130 AAT
* * * * *
32908820 TACTGGCTTCAATGTACTTCATTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTCC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
** *
32908885 ACTACTGCTTAGGGAGGTAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG-AGATAG
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAG-TAG
32908949 AAT
130 AAT
* * * * *
32908952 TACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCT
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
32909017 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
32909082 AT
131 AT
* *
32909084 TATTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATTCACCATCTTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
* *
32909149 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTTCCCAGGGAATTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
32909214 AT
131 AT
* * *
32909216 TACTGGCTTCAATGTACTCCACTACAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
* * *
32909281 ACTACTGCTTAGGGAGACAAGATTTGAAAT-TTTCAATCTATTCCACTGCTGTCCAGGAAAGTAG
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTT-AATCTATTCCACTGCTGCCCAGGGAAGTAG
32909345 AAT
130 AAT
* * *
32909348 TACTGGCTTCAATGTACTCCACTGTAACCATGA-GGAGGTAAAATTCACCATCTTTGATCTGCCC
1 TACTGGCTTCAATGTACTCCACTGCAACC-TCAGGGAGGTAAAATCCACCATCTTTGATCTGCCC
* *
32909412 TACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAGTAG
65 CACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAG
32909477 AAT
130 AAT
* *
32909480 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATTCACCATCCTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
32909545 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
32909610 AT
131 AT
* *
32909612 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
* * * *
32909677 ACTACTGCTTAGGGAGACAAGATTTGAAATCTTTAATCTATTCCACTACTGTCTAGGGAAGTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
32909742 AT
131 AT
* * * * * *
32909744 TGCTGGCTTCAATATACTCCACTGTAACCAC-GAGGAGGTAAAATCCGCCATCTTCGATCTGCTT
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAG-GGAGGTAAAATCCACCATCTTTGATCTGC--
** ** ** * *
32909808 CGCTGTCTA-TGC--AGAAAGGA-AAGATCTGCTATCTTCAATCTATTCCGCTGCTGCCCAGGGA
63 C-C-CACTACTGCTTAGGGA-GACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGA
32909869 AGTAGAAT
125 AGTAGAAT
* * * *
32909877 TACTGGCTTCAATGTACTCCACTGTAACCAC-GAGGAGGTAAAATCCGCCATCTTCGATCTGC
1 TACTGGCTTCAATGTACTCCACTGCAACCTCAG-GGAGGTAAAATCCACCATCTTTGATCTGC
32909939 TTCGCTGTCT
Statistics
Matches: 1025, Mismatches: 83, Indels: 21
0.91 0.07 0.02
Matches are distributed among these distances:
131 6 0.01
132 898 0.88
133 111 0.11
134 3 0.00
135 4 0.00
136 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCCCC
ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
AT
Found at i:32909246 original size:396 final size:395
Alignment explanation
Indices: 32908688--32909938 Score: 1976
Period size: 396 Copynumber: 3.2 Consensus size: 395
32908678 ATAAGAATAC
* *
32908688 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCC
1 TACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCC
* * *
32908753 ACTACTGCTTAGGGGGACAAGATCTGAAATCTTCAGTCTATTCCACTGCTGCCCAGGGAGATAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGA-ATAGA
* * *
32908818 ATTACTGGCTTCAATGTACTTCATTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCT
130 ATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCC
** * *
32908883 CCACTACTGCTTAGGGAGGTAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG-AGAT
195 CCACTACTGCTTAGGGAGACAAGATTTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGAAG-T
*
32908947 AGAATTACTAGCTTCAATGTACTCCACTGTAACCAC-AGGGAGGTAAAATTCACCATCTTTGATC
259 AGAATTACTGGCTTCAATGTACTCCACTGTAACCACGA-GGAGGTAAAATTCACCATCTTTGATC
32909011 TGCCCTACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGA
323 TGCCCTACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGA
32909076 AGTAGAAT
388 AGTAGAAT
* *
32909084 TATTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATTCACCATCTTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCC
*
32909149 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTTCCCAGGGAATTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAA-TAGA
*
32909214 ATTACTGGCTTCAATGTACTCCACTACAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCC
130 ATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCC
* *
32909279 CCACTACTGCTTAGGGAGACAAGATTTGAAATTTTCAATCTATTCCACTGCTGTCCAGGAAAGTA
195 CCACTACTGCTTAGGGAGACAAGATTTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGAAGTA
*
32909344 GAATTACTGGCTTCAATGTACTCCACTGTAACCATGAGGAGGTAAAATTCACCATCTTTGATCTG
260 GAATTACTGGCTTCAATGTACTCCACTGTAACCACGAGGAGGTAAAATTCACCATCTTTGATCTG
*
32909409 CCCTACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAG
325 CCCTACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAG
32909474 TAGAAT
390 TAGAAT
* *
32909480 TACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATTCACCATCCTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCC
32909545 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAA-TAGA
32909610 ATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCC
130 ATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCC
* * *
32909675 CCACTACTGCTTAGGGAGACAAGATTTGAAATCTTTAATCTATTCCACTACTGTCTAGGGAAGTA
195 CCACTACTGCTTAGGGAGACAAGATTTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGAAGTA
* * * * *
32909740 GAATTGCTGGCTTCAATATACTCCACTGTAACCACGAGGAGGTAAAATCCGCCATCTTCGATCTG
260 GAATTACTGGCTTCAATGTACTCCACTGTAACCACGAGGAGGTAAAATTCACCATCTTTGATCTG
* ** ** * *
32909805 CTTCGCTGTCTA-TGC--AGAAAGGA-AAGATCTGCTATCTTCAATCTATTCCGCTGCTGCCCAG
325 C--C-CT-ACTACTGCTTAGGGA-GACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAG
32909866 GGAAGTAGAAT
385 GGAAGTAGAAT
* * * *
32909877 TACTGGCTTCAATGTACTCCACTGTAACCAC-GAGGAGGTAAAATCCGCCATCTTCGATCTGC
1 TACTGGCTTCAATGTACTCCACTGCAACCACAG-GGAGGTAAAATTCACCATCTTTGATCTGC
32909939 TTCGCTGTCT
Statistics
Matches: 795, Mismatches: 51, Indels: 17
0.92 0.06 0.02
Matches are distributed among these distances:
395 1 0.00
396 679 0.85
397 104 0.13
398 3 0.00
399 5 0.01
400 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (395 bp):
TACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCC
ACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAATAGAA
TTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCCC
CACTACTGCTTAGGGAGACAAGATTTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGAAGTAG
AATTACTGGCTTCAATGTACTCCACTGTAACCACGAGGAGGTAAAATTCACCATCTTTGATCTGC
CCTACTACTGCTTAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGT
AGAAT
Found at i:32912206 original size:4 final size:4
Alignment explanation
Indices: 32912182--32912220 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
32912172 ATATACAAAA
* *
32912182 GAAT GTAT GAAT AATAT GAAT GAAT GAAT GAAT GAAT GA
1 GAAT GAAT GAAT GA-AT GAAT GAAT GAAT GAAT GAAT GA
32912221 TTTGGCAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (4 bp):
GAAT
Found at i:32926596 original size:13 final size:13
Alignment explanation
Indices: 32926578--32926621 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
32926568 ACAAAGAGTT
32926578 ACACGGCCTGGTG
1 ACACGGCCTGGTG
*
32926591 ACACGGCCTAGTG
1 ACACGGCCTGGTG
* *
32926604 ACACGGTCTGGCG
1 ACACGGCCTGGTG
32926617 ACACG
1 ACACG
32926622 ACCGTGTGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.20, C:0.32, G:0.34, T:0.14
Consensus pattern (13 bp):
ACACGGCCTGGTG
Found at i:32927205 original size:12 final size:11
Alignment explanation
Indices: 32927188--32927221 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
32927178 ACTTGTCCTC
32927188 AAGAAAACGAAA
1 AAGAAAAC-AAA
32927200 AAGAAAACAAA
1 AAGAAAACAAA
*
32927211 AAAAAAACAAA
1 AAGAAAACAAA
32927222 TAATAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.82, C:0.09, G:0.09, T:0.00
Consensus pattern (11 bp):
AAGAAAACAAA
Found at i:32928629 original size:24 final size:24
Alignment explanation
Indices: 32928581--32928630 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
32928571 AGGTCCATCA
* *
32928581 TCATCATCATCATCTCCCTCGTCT
1 TCATCATCATCATCACCCTCCTCT
**
32928605 TCATCATCATCATCAGTCTCCTCT
1 TCATCATCATCATCACCCTCCTCT
32928629 TC
1 TC
32928631 TCCCCCTCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.18, C:0.40, G:0.04, T:0.38
Consensus pattern (24 bp):
TCATCATCATCATCACCCTCCTCT
Found at i:32945407 original size:14 final size:15
Alignment explanation
Indices: 32945380--32945412 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
32945370 TCTATTTTAA
32945380 TATTATATTAAATTT
1 TATTATATTAAATTT
32945395 TATTATA-TAAATTT
1 TATTATATTAAATTT
32945409 TATT
1 TATT
32945413 GAATTGATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATATTAAATTT
Found at i:32951443 original size:28 final size:28
Alignment explanation
Indices: 32951397--32951452 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
32951387 TGGTTCTTGA
* *
32951397 AACATTAGATGTGATGTGCAAGTATGAT
1 AACATTAGATGCGACGTGCAAGTATGAT
32951425 AACATTAGATGCGACGTGCAAGTATGAT
1 AACATTAGATGCGACGTGCAAGTATGAT
32951453 TCAGGTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
AACATTAGATGCGACGTGCAAGTATGAT
Found at i:32954245 original size:27 final size:27
Alignment explanation
Indices: 32954209--32954276 Score: 102
Period size: 26 Copynumber: 2.5 Consensus size: 27
32954199 TTTGACTTTG
32954209 ACTAGCGAACCCCTAGTTCGCAACTTA
1 ACTAGCGAACCCCTAGTTCGCAACTTA
* *
32954236 CCTAGTGAA-CCCTAGTTCGCAACTTA
1 ACTAGCGAACCCCTAGTTCGCAACTTA
32954262 ACTAGCGAACTCCCT
1 ACTAGCGAAC-CCCT
32954277 TACCGCATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 24 0.69
27 7 0.20
28 4 0.11
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (27 bp):
ACTAGCGAACCCCTAGTTCGCAACTTA
Found at i:32954401 original size:74 final size:74
Alignment explanation
Indices: 32954319--32954475 Score: 296
Period size: 74 Copynumber: 2.1 Consensus size: 74
32954309 AAATTTGGGC
* *
32954319 GAACTCCTTACTGAAACTCTTTTGGCAAACTTCTTACTGATTCTTTTAATGGGCTAATTGACCAA
1 GAACTCCTTACTGAAACTCTTTTGGCAAACTTCTTACTGATTCTTTTAACGAGCTAATTGACCAA
32954384 AACACTAGT
66 AACACTAGT
32954393 GAACTCCTTACTGAAACTCTTTTGGCAAACTTCTTACTGATTCTTTTAACGAGCTAATTGACCAA
1 GAACTCCTTACTGAAACTCTTTTGGCAAACTTCTTACTGATTCTTTTAACGAGCTAATTGACCAA
32954458 AACACTAGT
66 AACACTAGT
32954467 GAACTCCTT
1 GAACTCCTT
32954476 GTTAATATTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (74 bp):
GAACTCCTTACTGAAACTCTTTTGGCAAACTTCTTACTGATTCTTTTAACGAGCTAATTGACCAA
AACACTAGT
Found at i:32955200 original size:38 final size:38
Alignment explanation
Indices: 32955129--32955202 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
32955119 CATGACTAAC
*
32955129 TAGATATCTAATAAATGTACATTCAAACATACCCGAAT
1 TAGATATCTAATAAAGGTACATTCAAACATACCCGAAT
*
32955167 TAGATATCTAATAAAGGTACATTCAAGCATACCCGA
1 TAGATATCTAATAAAGGTACATTCAAACATACCCGA
32955203 TCATAATGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (38 bp):
TAGATATCTAATAAAGGTACATTCAAACATACCCGAAT
Found at i:32962512 original size:12 final size:13
Alignment explanation
Indices: 32962495--32962523 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32962485 CTCATACATG
32962495 AATAAATAAA-GC
1 AATAAATAAATGC
32962507 AATAAATAAATGC
1 AATAAATAAATGC
32962520 AATA
1 AATA
32962524 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:32964808 original size:18 final size:18
Alignment explanation
Indices: 32964785--32964820 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32964775 TAAAAATAGC
32964785 CACAAATTGGTCTAAGTA
1 CACAAATTGGTCTAAGTA
32964803 CACAAATTGGTCTAAGTA
1 CACAAATTGGTCTAAGTA
32964821 TGGCTGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (18 bp):
CACAAATTGGTCTAAGTA
Found at i:32966698 original size:13 final size:13
Alignment explanation
Indices: 32966658--32966698 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
32966648 AAACGAATCC
32966658 AATTAAAATAAA-
1 AATTAAAATAAAT
*
32966670 AAATAAAATAAAAT
1 AATTAAAAT-AAAT
32966684 AATTAAAATAAAT
1 AATTAAAATAAAT
32966697 AA
1 AA
32966699 CTAAGGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 8 0.32
13 9 0.36
14 8 0.32
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AATTAAAATAAAT
Found at i:32970370 original size:21 final size:21
Alignment explanation
Indices: 32970335--32970384 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
32970325 TTTTTTTTTC
* *
32970335 AGCTTTTACGAGCTTCTGTTA
1 AGCTCTTATGAGCTTCTGTTA
* *
32970356 AGTTCTTATGAGCTTTTGTTA
1 AGCTCTTATGAGCTTCTGTTA
32970377 AGCTCTTA
1 AGCTCTTA
32970385 CGAACATTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.46
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTGTTA
Found at i:32970488 original size:21 final size:21
Alignment explanation
Indices: 32970453--32970540 Score: 113
Period size: 21 Copynumber: 4.2 Consensus size: 21
32970443 ACTTTTTTTT
* *
32970453 AGCTTTTACGAGCTTCTGTTA
1 AGCTCTTATGAGCTTCTGTTA
* * *
32970474 AGTTCTTATGAGCTTTTGTTC
1 AGCTCTTATGAGCTTCTGTTA
*
32970495 AGCTCTTACGAGCTTCTGTTA
1 AGCTCTTATGAGCTTCTGTTA
*
32970516 AGCTCTTATGAGCTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTA
32970537 AGCT
1 AGCT
32970541 TTCGAGCTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.43
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTGTTA
Found at i:32970499 original size:118 final size:120
Alignment explanation
Indices: 32970269--32970505 Score: 397
Period size: 118 Copynumber: 2.0 Consensus size: 120
32970259 GAGACAACAG
* * * * *
32970269 CATTTTTTCCCAAGTAAATCGGGGTTCAAAATTTGTTACAAACTCTCGTGTTTTACTTTTTTTTT
1 CATTTTTTCCCAACTAAACCAGGGTTCAAAATTTGTTACAAACTATCATGTTTTACTTTTTTTTT
32970334 CAGCTTTTACGAGCTTCTGTTAAGTTCTTATGAGCTTTTGTTAAGCTCTTACGAA
66 CAGCTTTTACGAGCTTCTGTTAAGTTCTTATGAGCTTTTGTTAAGCTCTTACGAA
*
32970389 CATTTTTTCCCAACTAAACCAGGGTTCAAAATTTGTTGCAAACTATCATGTTTTAC-TTTTTTTT
1 CATTTTTTCCCAACTAAACCAGGGTTCAAAATTTGTTACAAACTATCATGTTTTACTTTTTTTTT
*
32970453 -AGCTTTTACGAGCTTCTGTTAAGTTCTTATGAGCTTTTGTTCAGCTCTTACGA
66 CAGCTTTTACGAGCTTCTGTTAAGTTCTTATGAGCTTTTGTTAAGCTCTTACGA
32970506 GCTTCTGTTA
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
118 52 0.47
119 8 0.07
120 50 0.45
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (120 bp):
CATTTTTTCCCAACTAAACCAGGGTTCAAAATTTGTTACAAACTATCATGTTTTACTTTTTTTTT
CAGCTTTTACGAGCTTCTGTTAAGTTCTTATGAGCTTTTGTTAAGCTCTTACGAA
Found at i:32970505 original size:42 final size:41
Alignment explanation
Indices: 32970457--32970554 Score: 153
Period size: 42 Copynumber: 2.4 Consensus size: 41
32970447 TTTTTTAGCT
*
32970457 TTTACGAGCTTCTGTTAAGTTCTTATGAGCTTTTGTTCAGC
1 TTTACGAGCTTCTGTTAAGCTCTTATGAGCTTTTGTTCAGC
*
32970498 TCTTACGAGCTTCTGTTAAGCTCTTATGAGCTTCTGTTCAGC
1 T-TTACGAGCTTCTGTTAAGCTCTTATGAGCTTTTGTTCAGC
*
32970540 TTT-CGAGCTTTTGTT
1 TTTACGAGCTTCTGTT
32970555 GGCGTATTCG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
40 11 0.21
41 3 0.06
42 39 0.74
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.46
Consensus pattern (41 bp):
TTTACGAGCTTCTGTTAAGCTCTTATGAGCTTTTGTTCAGC
Found at i:32976498 original size:22 final size:20
Alignment explanation
Indices: 32976455--32976493 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32976445 CAATTTAAAA
32976455 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
32976475 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
32976494 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:32976623 original size:34 final size:32
Alignment explanation
Indices: 32976581--32976644 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 32
32976571 AAACACCAGA
*
32976581 AAATATTTT-TAGTAAATCATTTTCCAGAAAATT
1 AAATATTTTCTA-AAAATCATTTTCC-GAAAATT
32976614 AAATCATTTTCTAAAAATCATTTTCCGAAAA
1 AAAT-ATTTTCTAAAAATCATTTTCCGAAAA
32976645 ACATTTTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 9 0.32
34 17 0.61
35 2 0.07
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (32 bp):
AAATATTTTCTAAAAATCATTTTCCGAAAATT
Found at i:32976633 original size:14 final size:15
Alignment explanation
Indices: 32976614--32976651 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
32976604 CCAGAAAATT
*
32976614 AAATCATTTT-CTAA
1 AAATCATTTTCCGAA
32976628 AAATCATTTTCCGAA
1 AAATCATTTTCCGAA
32976643 AAA-CATTTT
1 AAATCATTTT
32976652 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATCATTTTCCGAA
Found at i:32983017 original size:21 final size:22
Alignment explanation
Indices: 32982991--32983031 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
32982981 TCCAGTAAAC
* *
32982991 TTTTTCTGGAAAAT-GAGAAGA
1 TTTTTCAGAAAAATAGAGAAGA
32983012 TTTTTCAGAAAAATAGAGAA
1 TTTTTCAGAAAAATAGAGAA
32983032 TTTTTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.32
Consensus pattern (22 bp):
TTTTTCAGAAAAATAGAGAAGA
Found at i:32983338 original size:12 final size:12
Alignment explanation
Indices: 32983321--32983345 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32983311 AACCCAAGAT
32983321 AATCTTATTTTA
1 AATCTTATTTTA
32983333 AATCTTATTTTA
1 AATCTTATTTTA
32983345 A
1 A
32983346 TATTAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (12 bp):
AATCTTATTTTA
Found at i:32985614 original size:212 final size:212
Alignment explanation
Indices: 32985247--32985676 Score: 815
Period size: 212 Copynumber: 2.0 Consensus size: 212
32985237 TATAGATGTC
32985247 TCATCTACATTTTACTTTGCATCTTAAAGGTCAGGTTTAGTTTAGTTTGTATACACAACACCATT
1 TCATCTACATTTTACTTTGCATCTTAAAGGTCAGGTTTAGTTTAGTTTGTATACACAACACCATT
32985312 GATTAGGGAGAGACCTTGCTAGCTTTCAGGTTTTGGATCAAATGTGACTTGCAATGACTAGTGCG
66 GATTAGGGAGAGACCTTGCTAGCTTTCAGGTTTTGGATCAAATGTGACTTGCAATGACTAGTGCG
32985377 CTCTATGTAGAAACATAACAGAAGACAGAAAATTAAGAAACTGAAAAAATGAATTGCGTATGTCT
131 CTCTATGTAGAAACATAACAGAAGACAGAAAATTAAGAAACTGAAAAAATGAATTGCGTATGTCT
*
32985442 TGTTTTTTCCTTCTGTT
196 TGTATTTTCCTTCTGTT
*
32985459 TCATCTACATTTTACTTTGCATCTTAAAGGTTAGGTTTAGTTTAGTTTGTATACACAACACCATT
1 TCATCTACATTTTACTTTGCATCTTAAAGGTCAGGTTTAGTTTAGTTTGTATACACAACACCATT
*
32985524 GATTAGGGAGAGACCTTGCTAGCTTTCAGGTTTTGGATCAAATGTGACTTGCAATGAGTAGTGCG
66 GATTAGGGAGAGACCTTGCTAGCTTTCAGGTTTTGGATCAAATGTGACTTGCAATGACTAGTGCG
* *
32985589 CTCTATGTAGAAACATAACAGAAGACAGAAAATTAAGAAACTGAATAAATGAATTGCTTATGTCT
131 CTCTATGTAGAAACATAACAGAAGACAGAAAATTAAGAAACTGAAAAAATGAATTGCGTATGTCT
32985654 TGTATTTTCCTTCTGTT
196 TGTATTTTCCTTCTGTT
32985671 TCATCT
1 TCATCT
32985677 TTTTTCTCTT
Statistics
Matches: 213, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
212 213 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (212 bp):
TCATCTACATTTTACTTTGCATCTTAAAGGTCAGGTTTAGTTTAGTTTGTATACACAACACCATT
GATTAGGGAGAGACCTTGCTAGCTTTCAGGTTTTGGATCAAATGTGACTTGCAATGACTAGTGCG
CTCTATGTAGAAACATAACAGAAGACAGAAAATTAAGAAACTGAAAAAATGAATTGCGTATGTCT
TGTATTTTCCTTCTGTT
Found at i:32990119 original size:3 final size:3
Alignment explanation
Indices: 32990111--32990135 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32990101 GAGTTTTCTC
32990111 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
32990136 TCCTTCAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:32994507 original size:32 final size:31
Alignment explanation
Indices: 32994471--32994531 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
32994461 ATATTTATGC
*
32994471 CTTAAATTGAAAATGATTTTTATATAAGGGAG
1 CTTAAATTGAAAATGACTTTTAT-TAAGGGAG
*
32994503 CTTAAATTGAAAATGGCTTTTATTAAGGG
1 CTTAAATTGAAAATGACTTTTATTAAGGG
32994532 GGAGCAATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.38
Consensus pattern (31 bp):
CTTAAATTGAAAATGACTTTTATTAAGGGAG
Found at i:32998020 original size:20 final size:20
Alignment explanation
Indices: 32997991--32998033 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
32997981 AAACTTTTGG
32997991 AAAAAGGACTAAATCATAAT
1 AAAAAGGACTAAATCATAAT
* *
32998011 AAAAATGACTAAATCGTAAT
1 AAAAAGGACTAAATCATAAT
32998031 AAA
1 AAA
32998034 TTGGAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (20 bp):
AAAAAGGACTAAATCATAAT
Found at i:32998627 original size:54 final size:54
Alignment explanation
Indices: 32998569--32998705 Score: 204
Period size: 54 Copynumber: 2.5 Consensus size: 54
32998559 AATCGTCTGC
* * *
32998569 CAGACCATGTAACTCACAT-ATTTGGGCCACACGCCCGTGTCTCAACCCGTGTGT
1 CAGACCATGTAACTCAC-TGACTTGGGCCACACACCCATGTCTCAACCCGTGTGT
32998623 CAGACCATGTAACTCACTGACTTGGGCCACACACCCATGTCTCAACCCGTGTGT
1 CAGACCATGTAACTCACTGACTTGGGCCACACACCCATGTCTCAACCCGTGTGT
* * *
32998677 CAAACCGTGTAACTCACTAACTTGGGCCA
1 CAGACCATGTAACTCACTGACTTGGGCCA
32998706 TACGTCTGTT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 75 0.99
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.23
Consensus pattern (54 bp):
CAGACCATGTAACTCACTGACTTGGGCCACACACCCATGTCTCAACCCGTGTGT
Found at i:33008068 original size:75 final size:75
Alignment explanation
Indices: 33007963--33008260 Score: 298
Period size: 75 Copynumber: 4.0 Consensus size: 75
33007953 AAACCAATAG
** * * * * *
33007963 ATATAATGACGTGCCCAACACCAATTAGATAAACTGACGAAGGTTGCGCCCAGCGCTAGTCGGAT
1 ATATAATGGTGTGCCCAACACTAGTCAGATAAACTGACGAAAGTTGCGCCCAACGCTAGTCGGAT
33008028 AAATCGAAAA
66 AAATCGAAAA
* * * * *
33008038 ATACAATGTTGTGCCCATCACTAGTCAGATAAACTGAAGAAAGTTGCGCCCAACGCTAGTCAGAT
1 ATATAATGGTGTGCCCAACACTAGTCAGATAAACTGACGAAAGTTGCGCCCAACGCTAGTCGGAT
*
33008103 AAACCGAAAA
66 AAATCGAAAA
* ** ** *
33008113 ATATAATGGTGTGCCCAACACTAGTCAAATAAACTGGTGAAAGTCACGCCCAATGCTAGTCGGAT
1 ATATAATGGTGTGCCCAACACTAGTCAGATAAACTGACGAAAGTTGCGCCCAACGCTAGTCGGAT
* *
33008178 ACA-CCAACAA
66 AAATCGAA-AA
* *
33008188 ATATAATGGTGTGCCCAGCACTAGTC-GAATAAA-TCGAC-AAAGGTTTGCGCCCAACGCTGGTC
1 ATATAATGGTGTGCCCAACACTAGTCAG-ATAAACT-GACGAAA-G-TTGCGCCCAACGCTAGTC
* *
33008250 GAATGAATCGA
62 GGATAAATCGA
33008261 CAATGGTTCG
Statistics
Matches: 181, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
74 7 0.04
75 154 0.85
76 18 0.10
77 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (75 bp):
ATATAATGGTGTGCCCAACACTAGTCAGATAAACTGACGAAAGTTGCGCCCAACGCTAGTCGGAT
AAATCGAAAA
Found at i:33008069 original size:40 final size:38
Alignment explanation
Indices: 33008018--33008146 Score: 122
Period size: 40 Copynumber: 3.4 Consensus size: 38
33008008 GCGCCCAGCG
* *
33008018 CTAGTCGGATAAATCGAAAAATACAATGTTGTGCCCATCA
1 CTAGTCAGATAAA-CGAAAAATA-AATGTTGTGCCCAACA
* * *
33008058 CTAGTCAGATAAACTG---AAGAAA-GTTGCGCCCAACG
1 CTAGTCAGATAAAC-GAAAAATAAATGTTGTGCCCAACA
*
33008093 CTAGTCAGATAAACCGAAAAATATAATGGTGTGCCCAACA
1 CTAGTCAGATAAA-CGAAAAATA-AATGTTGTGCCCAACA
*
33008133 CTAGTCAAATAAAC
1 CTAGTCAGATAAAC
33008147 TGGTGAAAGT
Statistics
Matches: 72, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
35 24 0.33
36 3 0.04
37 3 0.04
38 3 0.04
39 4 0.06
40 35 0.49
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (38 bp):
CTAGTCAGATAAACGAAAAATAAATGTTGTGCCCAACA
Found at i:33008097 original size:35 final size:35
Alignment explanation
Indices: 33007989--33008106 Score: 103
Period size: 35 Copynumber: 3.2 Consensus size: 35
33007979 AACACCAATT
* * *
33007989 AGATAAACTGACGAAGGTTGCGCCCAGCGCTAGTC
1 AGATAAACTGAAGAAAGTTGCGCCCAACGCTAGTC
* * * * *
33008024 GGATAAA-TCGAAAAATACAATGTTGTGCCCATCACTAGTC
1 AGATAAACT-G---AAGA-AA-GTTGCGCCCAACGCTAGTC
33008064 AGATAAACTGAAGAAAGTTGCGCCCAACGCTAGTC
1 AGATAAACTGAAGAAAGTTGCGCCCAACGCTAGTC
33008099 AGATAAAC
1 AGATAAAC
33008107 CGAAAAATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
34 1 0.02
35 31 0.48
36 2 0.03
37 3 0.05
38 2 0.03
39 1 0.02
40 23 0.36
41 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (35 bp):
AGATAAACTGAAGAAAGTTGCGCCCAACGCTAGTC
Found at i:33009175 original size:28 final size:28
Alignment explanation
Indices: 33009135--33009188 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
33009125 TAAATTCACT
*
33009135 TTACAAGGTAGTCTCACTTACCTTCCTA
1 TTACAAGGTAGTCTCACTTAACTTCCTA
33009163 TTACAAGGTAGTCTCACTTAACTTCC
1 TTACAAGGTAGTCTCACTTAACTTCC
33009189 AATCCTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (28 bp):
TTACAAGGTAGTCTCACTTAACTTCCTA
Found at i:33016957 original size:50 final size:49
Alignment explanation
Indices: 33016801--33016957 Score: 179
Period size: 50 Copynumber: 3.1 Consensus size: 49
33016791 CTACAATACT
* * * *
33016801 AATTCACACATATAACTTATATAATTAGCACACAAATACTTTGTATAGAC
1 AATTCATACATAGAACTTATATAA-TAGCACGCACATACTTTGTATAGAC
* * * * * *
33016851 AGTTCAAACAGAGAAATTATATAATCAACGCGCACATACTTTGTATAGAC
1 AATTCATACATAGAACTTATATAAT-AGCACGCACATACTTTGTATAGAC
* *
33016901 AATTCATACATAGAACTTAAATAAGTAGCACGCACATACTCTGTATAGAC
1 AATTCATACATAGAACTTATATAA-TAGCACGCACATACTTTGTATAGAC
33016951 AATTCAT
1 AATTCAT
33016958 GGACCCTTTC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
49 1 0.01
50 86 0.98
51 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (49 bp):
AATTCATACATAGAACTTATATAATAGCACGCACATACTTTGTATAGAC
Found at i:33026727 original size:20 final size:19
Alignment explanation
Indices: 33026702--33026753 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
33026692 GATTTTTGGG
*
33026702 AAAATTAATTTTAATCAAGT
1 AAAATTAA-ATTAATCAAGT
*
33026722 AAAATTAAATTAATCAAAT
1 AAAATTAAATTAATCAAGT
*
33026741 -TAATTAAATTAAT
1 AAAATTAAATTAAT
33026754 ATGATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 12 0.41
19 9 0.31
20 8 0.28
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTAAATTAATCAAGT
Found at i:33027216 original size:39 final size:37
Alignment explanation
Indices: 33027143--33027226 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 37
33027133 AATAATATTT
* *
33027143 TTAATATATTTAATATTAAATTAATTTTAATAATTATG
1 TTAATATATTT-ATATTAAATTAATTTAAATAATTATC
*
33027181 TTAATAGTATTT-TATTAATTTAATATTAAATTAATTATC
1 TTAATA-TATTTATATTAAATTAAT-TTAAA-TAATTATC
33027220 TTAATAT
1 TTAATAT
33027227 TAAATTTAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
37 11 0.28
38 11 0.28
39 18 0.45
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (37 bp):
TTAATATATTTATATTAAATTAATTTAAATAATTATC
Found at i:33027223 original size:25 final size:25
Alignment explanation
Indices: 33027195--33027243 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
33027185 TAGTATTTTA
33027195 TTAAT-TTAATATTAAATTAATTATC
1 TTAATATTAA-ATTAAATTAATTATC
* *
33027220 TTAATATTAAATTTAATTCATTAT
1 TTAATATTAAATTAAATTAATTAT
33027244 TTGCATACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (25 bp):
TTAATATTAAATTAAATTAATTATC
Found at i:33037250 original size:25 final size:26
Alignment explanation
Indices: 33037196--33037256 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
33037186 TAGATTAGAT
*
33037196 TTAATACTT-ATATTAATAGTATTTTA
1 TTAATA-TTAATATTAATAGTATTATA
*
33037222 TTAAT-TTAATATTAA-AGTGATTATC
1 TTAATATTAATATTAATAGT-ATTATA
33037247 TTAATATTAA
1 TTAATATTAA
33037257 ATTTAATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 5 0.17
25 16 0.53
26 9 0.30
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (26 bp):
TTAATATTAATATTAATAGTATTATA
Found at i:33039160 original size:27 final size:27
Alignment explanation
Indices: 33039094--33039161 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
33039084 ACAAAATTCT
* * *
33039094 CGTGTTTACTATCCTAATGGACTACCC
1 CGTGTTTAATGTCCTAATAGACTACCC
* * * *
33039121 CATGTTCAGTGTCCTGATAGACTACCC
1 CGTGTTTAATGTCCTAATAGACTACCC
33039148 CGTGTTTAATGTCC
1 CGTGTTTAATGTCC
33039162 CAGCGGACTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.34
Consensus pattern (27 bp):
CGTGTTTAATGTCCTAATAGACTACCC
Found at i:33041466 original size:25 final size:25
Alignment explanation
Indices: 33041438--33041497 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
33041428 GAAAACCAAA
*
33041438 TATTGGGTTTGCTCAAATTATAAAG
1 TATTGGGTTCGCTCAAATTATAAAG
33041463 TATTGGGTTCGCTCAAATTATAAAG
1 TATTGGGTTCGCTCAAATTATAAAG
33041488 TATTGGGTTC
1 TATTGGGTTC
33041498 AAAGCTCGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (25 bp):
TATTGGGTTCGCTCAAATTATAAAG
Found at i:33043354 original size:68 final size:68
Alignment explanation
Indices: 33043276--33043553 Score: 488
Period size: 68 Copynumber: 4.1 Consensus size: 68
33043266 TCAAGTTTGT
* *
33043276 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATATAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
33043341 AAA
66 AAA
*
33043344 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAGTTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
33043409 AAA
66 AAA
* *
33043412 TTTACTAATCAAATGTTATATTTTATTACAACAATTAATACAATTAATACAGTTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
33043477 AAA
66 AAA
33043480 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
33043543 AAT
66 AAA
33043546 TTTACTAA
1 TTTACTAA
33043554 CAATTAATTT
Statistics
Matches: 203, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
66 26 0.13
67 1 0.00
68 176 0.87
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:33043563 original size:16 final size:16
Alignment explanation
Indices: 33043542--33043583 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
33043532 AATAATTTGA
*
33043542 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
33043558 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
33043574 TATTTTTAAT
1 TAATTTTAAT
33043584 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:33043567 original size:22 final size:23
Alignment explanation
Indices: 33043557--33043618 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
33043547 TTACTAACAA
* * *
33043557 TTAATTTTAAT-AACAATTATTT
1 TTAATTTTAATAAAAAAATAATT
*
33043579 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
33043602 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
33043619 CGGGCTGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:33045145 original size:15 final size:16
Alignment explanation
Indices: 33045125--33045154 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33045115 AATAAAAATA
33045125 ACTTTTTTA-TTTTTC
1 ACTTTTTTAGTTTTTC
33045140 ACTTTTTTAGTTTTT
1 ACTTTTTTAGTTTTT
33045155 TCTTTTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.73
Consensus pattern (16 bp):
ACTTTTTTAGTTTTTC
Found at i:33045374 original size:29 final size:28
Alignment explanation
Indices: 33045317--33045382 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 28
33045307 AGTAAATTTC
* **
33045317 TCATTTTTGTAATTAATTTGTTTCTTAT
1 TCATTTTTATAATTAATTTGTTTAATAT
* *
33045345 TCCATTTTTATAGTTAATTTTTTTAATAT
1 T-CATTTTTATAATTAATTTGTTTAATAT
33045374 T-ATTTTTAT
1 TCATTTTTAT
33045383 CAAAAGACCT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 8 0.25
28 1 0.03
29 23 0.72
ACGTcount: A:0.24, C:0.06, G:0.05, T:0.65
Consensus pattern (28 bp):
TCATTTTTATAATTAATTTGTTTAATAT
Found at i:33046764 original size:26 final size:25
Alignment explanation
Indices: 33046717--33046768 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
33046707 GATTTTTTTG
*
33046717 TTTAGGGTTTTTTAGGTTTAAGGTT
1 TTTAGGGTTTATTAGGTTTAAGGTT
33046742 TTTAGGGTTTGATTA-GTTCTAAGGTT
1 TTTAGGGTTT-ATTAGGTT-TAAGGTT
33046768 T
1 T
33046769 AAAGTTTAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.17, C:0.02, G:0.27, T:0.54
Consensus pattern (25 bp):
TTTAGGGTTTATTAGGTTTAAGGTT
Found at i:33046891 original size:17 final size:17
Alignment explanation
Indices: 33046848--33046894 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
33046838 TTTTTTAGTT
33046848 TTTAAGGTTTTTTATAG
1 TTTAAGGTTTTTTATAG
* *
33046865 GTTAAGGGTTTTTTCT-G
1 TTTAA-GGTTTTTTATAG
33046882 CTTTAAGGTTTTT
1 -TTTAAGGTTTTT
33046895 ACGAGTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.17, C:0.04, G:0.21, T:0.57
Consensus pattern (17 bp):
TTTAAGGTTTTTTATAG
Found at i:33051074 original size:16 final size:17
Alignment explanation
Indices: 33051040--33051077 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
33051030 AAAACTAAGA
*
33051040 TTTTTAGAACATCTAAT
1 TTTTTACAACATCTAAT
*
33051057 TTTTTACAACAT-TCAT
1 TTTTTACAACATCTAAT
33051073 TTTTT
1 TTTTT
33051078 TTTTCTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.29, C:0.13, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTTACAACATCTAAT
Found at i:33054243 original size:77 final size:77
Alignment explanation
Indices: 33054042--33054233 Score: 262
Period size: 77 Copynumber: 2.5 Consensus size: 77
33054032 ATTAAAGGTA
* **
33054042 AAATAAAAATCATTTCGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAAATTGTCTTATTT
1 AAATAAAAATCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTCTTATTT
*
33054107 CCAAAAATGAGT
66 CCAAAAACGAGT
** * * *
33054119 AAATAAAAATCGTTTTAGGATTGATTCCCGCCGTTCAACAATTTTATTCCAAATTTGTTTTATTT
1 AAATAAAAATCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTCTTATTT
33054184 -CAAAAACGAGT
66 CCAAAAACGAGT
*
33054195 AACAT-AAAATCCGTTTCGGGATTGATTCCCACCGTTCAA
1 AA-ATAAAAAT-CGTTTCGGGATTGATTCCCGCCGTTCAA
33054234 TGGATTTATT
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
76 17 0.17
77 84 0.83
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (77 bp):
AAATAAAAATCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTCTTATTT
CCAAAAACGAGT
Found at i:33054390 original size:84 final size:84
Alignment explanation
Indices: 33054277--33054436 Score: 239
Period size: 84 Copynumber: 1.9 Consensus size: 84
33054267 AATGAGAAAT
* * * *
33054277 TAAATTAAATTAAATCTGTTTCAGAATTTATTCCCGCTATTTAACAAGATTTTATTTGATTTTAT
1 TAAATTAAATAAAATCTGTTTCAGAATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTAT
33054342 TTTGTTTCCAAATTCGAAC
66 TTTGTTTCCAAATTCGAAC
* * * * *
33054361 TAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATATTGT
1 TAAATTAAATAAAATCTGTTTCAGAATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTAT
33054426 TTTGTTTCCAA
66 TTTGTTTCCAA
33054437 GCAAAGACGT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.46
Consensus pattern (84 bp):
TAAATTAAATAAAATCTGTTTCAGAATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTAT
TTTGTTTCCAAATTCGAAC
Found at i:33054455 original size:84 final size:82
Alignment explanation
Indices: 33054277--33054498 Score: 193
Period size: 84 Copynumber: 2.7 Consensus size: 82
33054267 AATGAGAAAT
* * * * * * *
33054277 TAAATTAAATTAAATCTGTTTCAGAATTTATTCCCGCTATTTAACAAGATTTTATTTGATTTTAT
1 TAAATCAAA-TAAATTTGTTTCGGGATTTATTCCCGC-CTTTAACAAGATTTTATTCGATATTAT
**
33054342 TTTGTTTCCAAATTCGAAC
64 TTTGTTTCCAAATAAGAAC
* *
33054361 TAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATATTGT
1 TAAATCAAAT-AAATTTGTTTCGGGATTTATTCCCGCC-TTTAACAAGATTTTATTCGATATTAT
33054426 TTTGTTTCCAAGCA-AAG-AC
64 TTTGTTTCCAA--ATAAGAAC
* * * *
33054445 GT-AATCAAAT-AATTCTATTTTGGGATTTATTCCTGCCATTAA-ATAGATTTTATT
1 -TAAATCAAATAAATT-TGTTTCGGGATTTATTCCCGCCTTTAACA-AGATTTTATT
33054499 TTGATTTAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
81 1 0.01
82 18 0.15
83 20 0.17
84 75 0.64
85 2 0.02
86 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (82 bp):
TAAATCAAATAAATTTGTTTCGGGATTTATTCCCGCCTTTAACAAGATTTTATTCGATATTATTT
TGTTTCCAAATAAGAAC
Found at i:33066236 original size:39 final size:39
Alignment explanation
Indices: 33066140--33066238 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 39
33066130 ATTCACTTTT
* * *
33066140 AAGCATATATCACATTACACATATAATTACATAATATTC
1 AAGCATATATCACAATACTCATATAATTACATAACATTC
* * * * *
33066179 AAGCACACATCGCAATACTCATATAATTGCATAACGTTC
1 AAGCATATATCACAATACTCATATAATTACATAACATTC
33066218 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
33066239 AAAACATGTT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATTACATAACATTC
Found at i:33070754 original size:50 final size:49
Alignment explanation
Indices: 33070679--33070864 Score: 173
Period size: 50 Copynumber: 3.7 Consensus size: 49
33070669 GGTGGTCACG
*
33070679 TGTGTAGTACTATGTGCAGGTTACTACGTGTACCTGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATGATAGGTCGCA
* * *
33070729 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCG---GATAGCTTCGATCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAG-GTCG--CA
* * * * *
33070778 CGTTATAGTACTATATGCAGGCTACTACGTGTATCGGATAGTGATA-GTCACA
1 TG-TGTAGTACTATGTGCAGGCTACTACGTGTA-CCGA-A-TGATAGGTCGCA
* *
33070830 TGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
33070865 GTATCATTAA
Statistics
Matches: 108, Mismatches: 18, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
46 5 0.05
47 3 0.03
49 4 0.04
50 59 0.55
51 28 0.26
52 3 0.03
54 2 0.02
56 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAGGTCGCA
Done.