Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 113 of 218
Found at i:33362095 original size:2 final size:2
Alignment explanation
Indices: 33362088--33362126 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
33362078 TAGCATTAGC
33362088 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
33362127 GCTTTATGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:33362618 original size:19 final size:19
Alignment explanation
Indices: 33362594--33362630 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
33362584 AATGTAACTT
*
33362594 TTTTATATTTTTTTAAAAG
1 TTTTATAATTTTTTAAAAG
33362613 TTTTATAATTTTTTAAAA
1 TTTTATAATTTTTTAAAA
33362631 TATAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTATAATTTTTTAAAAG
Found at i:33363727 original size:43 final size:43
Alignment explanation
Indices: 33363631--33363900 Score: 308
Period size: 43 Copynumber: 6.3 Consensus size: 43
33363621 GTTTTTAGAA
* ** *
33363631 ACAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGC-TTTCCC
1 ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
* * *
33363673 ACAAGCGCCGCTATAGACCATGACCTTTAGCGGCGATTTTCCC
1 ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
* * *
33363716 ACAAACGCCGCTATAAACCATGACCTTTAGTGGCGCTTTTTTC
1 ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
* * *
33363759 ACTAATGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTATC
1 ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
* * * *
33363802 ACAAACGCCACTATAGACCATGACCTTTATCGGCGCTTTTATT
1 ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
* * * ** * *
33363845 TCAAACACCGCTAAAGACCATGATATTTAGCGGCGCTTCTCGC
1 ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
*
33363888 AAAAACGCCGCTA
1 ACAAACGCCGCTA
33363901 AAAACATAAT
Statistics
Matches: 192, Mismatches: 35, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
42 31 0.16
43 161 0.84
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (43 bp):
ACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCTC
Found at i:33365254 original size:22 final size:22
Alignment explanation
Indices: 33365229--33365277 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
33365219 GAAAACACAT
33365229 ACCTAGTTATTAAAATGGATTA
1 ACCTAGTTATTAAAATGGATTA
33365251 ACCTAGTTATTAAAATGGATTA
1 ACCTAGTTATTAAAATGGATTA
33365273 ACCTA
1 ACCTA
33365278 TTTGTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (22 bp):
ACCTAGTTATTAAAATGGATTA
Found at i:33366289 original size:91 final size:86
Alignment explanation
Indices: 33366185--33366346 Score: 252
Period size: 91 Copynumber: 1.8 Consensus size: 86
33366175 AGCAATTTTT
* *
33366185 TTTCATTTGGAACAAAATGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTATTTTTTATAAA
1 TTTCATTTGGAACAAAATGACGCCGTTTTGCTATGCT--AA-TTTTTT-TTAT-TTTTTTATAAA
33366250 TTGATTTATTTATAAAAACGCCGCTA
61 TTGATTTATTTATAAAAACGCCGCTA
*
33366276 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAATTTTTTTTATTTTTTTATAAATTGAT
1 TTTCATTTGGAACAAAATGACGCCGTTTTGCTATGCTAATTTTTTTTATTTTTTTATAAATTGAT
33366341 TTATTT
66 TTATTT
33366347 TTTGCGGCGC
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
86 22 0.32
87 3 0.04
88 6 0.09
89 2 0.03
91 35 0.51
ACGTcount: A:0.28, C:0.11, G:0.10, T:0.51
Consensus pattern (86 bp):
TTTCATTTGGAACAAAATGACGCCGTTTTGCTATGCTAATTTTTTTTATTTTTTTATAAATTGAT
TTATTTATAAAAACGCCGCTA
Found at i:33366593 original size:75 final size:76
Alignment explanation
Indices: 33366514--33366661 Score: 244
Period size: 75 Copynumber: 2.0 Consensus size: 76
33366504 CGTTTTTATA
* * *
33366514 AAAAACGCCGCTATTTTATTTTGAACAAATTGACGCCGTTTTGCTATGCT-AAAATTTTTTATTT
1 AAAAACGCCGCTATTTCATTTTGAAAAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTT
33366578 TATTTTTTGCT
66 TATTTTTTGCT
* *
33366589 AAAAACGCCGCTATTTCATTTTGAAAAAAATGATGCCGTTTTGCTATGTTAAAAATTTTTTATTT
1 AAAAACGCCGCTATTTCATTTTGAAAAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTT
33366654 TATTTTTT
66 TATTTTTT
33366662 TTGTAAATTG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
75 45 0.67
76 22 0.33
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (76 bp):
AAAAACGCCGCTATTTCATTTTGAAAAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTT
TATTTTTTGCT
Found at i:33367457 original size:14 final size:14
Alignment explanation
Indices: 33367439--33367480 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
33367429 AACCCTTAAA
33367439 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
33367453 TCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
33367468 CCATACTCCCTAA
1 CCATAATCCCTAA
33367481 ATCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:33367477 original size:15 final size:15
Alignment explanation
Indices: 33367435--33367483 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
33367425 TCTCAACCCT
33367435 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
33367449 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
33367463 TAAATCCATACTCCC
1 TAAATCCATAATCCC
33367478 TAAATC
1 TAAATC
33367484 TTAAAATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 2 0.07
14 11 0.37
15 17 0.57
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:33367701 original size:15 final size:15
Alignment explanation
Indices: 33367681--33367714 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
33367671 CCTAGCACGT
33367681 CTAACCC-CTAAACCC
1 CTAACCCTCT-AACCC
33367696 CTAACCCTCTAACCC
1 CTAACCCTCTAACCC
33367711 CTAA
1 CTAA
33367715 ACCTTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.89
16 2 0.11
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAACCCTCTAACCC
Found at i:33367717 original size:8 final size:7
Alignment explanation
Indices: 33367681--33367714 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
33367671 CCTAGCACGT
33367681 CTAACCC
1 CTAACCC
33367688 CTAAACCC
1 CT-AACCC
33367696 CTAACCC
1 CTAACCC
33367703 TCTAACCC
1 -CTAACCC
33367711 CTAA
1 CTAA
33367715 ACCTTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAACCC
Found at i:33368296 original size:113 final size:113
Alignment explanation
Indices: 33368012--33368384 Score: 541
Period size: 113 Copynumber: 3.3 Consensus size: 113
33368002 AGATAAAATA
* * * * * *
33368012 TTTTTAGCGGCGCTTTCC-AAAAAATGCCGCTAAAGACCTGTGCATTAGCGGCACTTTCATAAAA
1 TTTTTTGCGGCGC-TTCCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCATAAAA
* * * * *
33368076 ACACCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGACTGAGG
65 ACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG
* *
33368125 TTTTTTTGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTAAAA
1 -TTTTTTGCGGCGCTTCCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCATAAAA
*
33368190 ACGCCGCTAAATCCCCGAAAGCTAACAAAACGGCGTCGTTGGGCTTAGG
65 ACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG
* *
33368239 TTTTTTGCGGCGCTTCCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTTTCTTAAAAA
1 TTTTTTGCGGCGCTTCCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCATAAAAA
** *
33368304 CGCCGCTAAATCAACAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG
66 CGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG
*
33368352 TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
1 TTTTTTGCGGCGCTTCCTCAAAAACGCCGCTAA
33368385 TGCTTATTTT
Statistics
Matches: 237, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
113 142 0.60
114 95 0.40
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (113 bp):
TTTTTTGCGGCGCTTCCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCATAAAAA
CGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG
Found at i:33371044 original size:25 final size:22
Alignment explanation
Indices: 33370986--33371051 Score: 69
Period size: 25 Copynumber: 2.8 Consensus size: 22
33370976 GTAACTACTT
33370986 TTTTATATTAAAATATTTTTTTA
1 TTTT-TATTAAAATATTTTTTTA
* *
33371009 TTTTAAATAAAATAGTATTATTTTA
1 TTTTTATTAAAATA-T-TT-TTTTA
33371034 TTTTTATTAAAAATATTT
1 TTTTTATT-AAAATATTT
33371052 AAATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
22 8 0.23
23 5 0.14
24 4 0.11
25 12 0.34
26 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTTATTAAAATATTTTTTTA
Found at i:33371161 original size:26 final size:27
Alignment explanation
Indices: 33371117--33371169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
33371107 CTCGAGACCA
*
33371117 GTCGCGCCTGTCAGATAGGCGCCACTG
1 GTCGCGCCTGACAGATAGGCGCCACTG
*
33371144 GTCGC-CCTGACAGGTAGGCGCCACTG
1 GTCGCGCCTGACAGATAGGCGCCACTG
33371170 CCTCCCCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (27 bp):
GTCGCGCCTGACAGATAGGCGCCACTG
Found at i:33371393 original size:60 final size:59
Alignment explanation
Indices: 33371304--33371421 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 59
33371294 TTGTTTTTTA
*
33371304 TAATTATTTTAAAATAATTTGTTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
1 TAATTATTTTAAAATAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
33371363 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAA-TAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTT
33371422 AGTTTAGTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 14 0.25
60 43 0.75
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (59 bp):
TAATTATTTTAAAATAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
Found at i:33371710 original size:21 final size:21
Alignment explanation
Indices: 33371677--33371717 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
33371667 GGGAACCAAT
*
33371677 AAAATAATATTTAA-AAAAAC
1 AAAAAAATATTTAATAAAAAC
33371697 AAAAAAATATTTTAATAAAAA
1 AAAAAAATA-TTTAATAAAAA
33371718 AAGTGGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAAAATATTTAATAAAAAC
Found at i:33372643 original size:22 final size:22
Alignment explanation
Indices: 33372618--33372665 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
33372608 TTTATTCAGG
*
33372618 AATTTAGTCTTCATATATTTGA
1 AATTTAGTCTTCATACATTTGA
*
33372640 AATTTAGTCTTCGTACATTTGA
1 AATTTAGTCTTCATACATTTGA
33372662 AATT
1 AATT
33372666 ATAGAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.48
Consensus pattern (22 bp):
AATTTAGTCTTCATACATTTGA
Found at i:33378403 original size:60 final size:62
Alignment explanation
Indices: 33378339--33378455 Score: 166
Period size: 61 Copynumber: 1.9 Consensus size: 62
33378329 TACCCTTCAA
* * *
33378339 GAGTTTTACCACAAAGGCATT-TTTTACATCCAATACTCGCCACTAAGG-TTTCCCTGTCTG
1 GAGTTGTACCACAAAGGCATTCTTTAACATCCAATACTCGCCACCAAGGCTTTCCCTGTCTG
* * *
33378399 GAGTTGTACCACAAAGGCATTCTTTAATATTCAATACTTGCCACCAAGGCTTTCCCT
1 GAGTTGTACCACAAAGGCATTCTTTAACATCCAATACTCGCCACCAAGGCTTTCCCT
33378456 TCTAGAATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 20 0.41
61 22 0.45
62 7 0.14
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (62 bp):
GAGTTGTACCACAAAGGCATTCTTTAACATCCAATACTCGCCACCAAGGCTTTCCCTGTCTG
Found at i:33382537 original size:31 final size:32
Alignment explanation
Indices: 33382501--33382565 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
33382491 CTTAGATAAT
33382501 TTTAAAGAG-TTTTATTAGGATCCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATCCAATTACTC
* *
33382532 TTTAAAGAGTTTTTGTTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATCCAATTACTC
33382564 TT
1 TT
33382566 GTAATTTGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 9 0.29
32 22 0.71
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATCCAATTACTC
Found at i:33382916 original size:29 final size:27
Alignment explanation
Indices: 33382867--33382925 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
33382857 AATCTATCCT
*
33382867 TTTTATTTATTTATTTATTATTTAACTAA
1 TTTTATTTATTTAGTTATTATTT--CTAA
*
33382896 TTTTATTTATTCTCGTT-TTATTTCTAA
1 TTTTATTTATT-TAGTTATTATTTCTAA
33382923 TTT
1 TTT
33382926 GTGTTTCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.26
29 17 0.63
30 3 0.11
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.68
Consensus pattern (27 bp):
TTTTATTTATTTAGTTATTATTTCTAA
Found at i:33388713 original size:31 final size:32
Alignment explanation
Indices: 33388677--33388741 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
33388667 CTTAGATAAT
33388677 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
*
33388708 TTTAAAGAGTTTTTATTAGGATTCAGTTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
33388740 TT
1 TT
33388742 GTAATTTGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:33389090 original size:29 final size:27
Alignment explanation
Indices: 33389041--33389099 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
33389031 AATCTATCCT
*
33389041 TTTTATTTATTTATTTATTATTTAACTAA
1 TTTTATTTATTTAGTTATTATTT--CTAA
*
33389070 TTTTATTTATTCTCGTT-TTATTTCTAA
1 TTTTATTTATT-TAGTTATTATTTCTAA
33389097 TTT
1 TTT
33389100 GTGTTTCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.26
29 17 0.63
30 3 0.11
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.68
Consensus pattern (27 bp):
TTTTATTTATTTAGTTATTATTTCTAA
Found at i:33391494 original size:16 final size:18
Alignment explanation
Indices: 33391473--33391507 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
33391463 AGTTGACTAT
33391473 TTAAATTG-TAAA-AAAA
1 TTAAATTGATAAATAAAA
33391489 TTAAATTGATAAATAAAA
1 TTAAATTGATAAATAAAA
33391507 T
1 T
33391508 GCCAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (18 bp):
TTAAATTGATAAATAAAA
Found at i:33393854 original size:22 final size:19
Alignment explanation
Indices: 33393823--33393863 Score: 55
Period size: 22 Copynumber: 2.0 Consensus size: 19
33393813 TTAATCAACA
33393823 TTTTAATAAATCAATAAAATT
1 TTTTAATAAAT-AA-AAAATT
33393844 TTTTAAATAAATAAAAAATT
1 TTTT-AATAAATAAAAAATT
33393864 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 6 0.32
22 7 0.37
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTTAATAAATAAAAAATT
Found at i:33393884 original size:15 final size:16
Alignment explanation
Indices: 33393861--33393897 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
33393851 TAAATAAAAA
33393861 ATTAAAT-AAAATTAC
1 ATTAAATAAAAATTAC
*
33393876 ATTATATAAAAATTAC
1 ATTAAATAAAAATTAC
33393892 ATTAAA
1 ATTAAA
33393898 AAATCACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTAAATAAAAATTAC
Found at i:33394955 original size:7 final size:7
Alignment explanation
Indices: 33394945--33394970 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
33394935 ACTAAACATA
33394945 AATAATT
1 AATAATT
33394952 AATAATT
1 AATAATT
33394959 AATAATT
1 AATAATT
33394966 AATAA
1 AATAA
33394971 CAAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AATAATT
Found at i:33395082 original size:9 final size:10
Alignment explanation
Indices: 33395053--33395089 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
33395043 CCTTTTTTTT
33395053 TTCTTTCTTC
1 TTCTTTCTTC
33395063 TTC-TTCTTC
1 TTCTTTCTTC
33395072 TTCTTTC-TC
1 TTCTTTCTTC
*
33395081 TTTTTTCTT
1 TTCTTTCTT
33395090 TCTCTCTTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (10 bp):
TTCTTTCTTC
Found at i:33395414 original size:12 final size:11
Alignment explanation
Indices: 33395391--33395420 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
33395381 GACAAACGCG
33395391 ACCCGTTTTTT
1 ACCCGTTTTTT
33395402 ACCCGTATTTTT
1 ACCCGT-TTTTT
33395414 ACCCGTT
1 ACCCGTT
33395421 GACCGTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.13, C:0.30, G:0.10, T:0.47
Consensus pattern (11 bp):
ACCCGTTTTTT
Found at i:33403263 original size:23 final size:23
Alignment explanation
Indices: 33403215--33403256 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
33403205 AACTTTTATA
33403215 TAAATTTTATTGTTGATTTTTTT
1 TAAATTTTATTGTTGATTTTTTT
33403238 TAAATTTTATT-TT-ATTTTT
1 TAAATTTTATTGTTGATTTTT
33403257 AGTTTAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 11 0.58
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (23 bp):
TAAATTTTATTGTTGATTTTTTT
Found at i:33408483 original size:38 final size:38
Alignment explanation
Indices: 33408436--33408526 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 38
33408426 GCAAAAGTTG
* * * * *
33408436 AAAACCACAATTCACCCTAACGGTAGTGGGTCAGAACA
1 AAAATCACAATTCACCCCAACAGTAATGGGTCAAAACA
** * *
33408474 AAAATCACAATTCACCCCAGTAGTAATGGGTTAAAACG
1 AAAATCACAATTCACCCCAACAGTAATGGGTCAAAACA
33408512 AAAATCACAATTCAC
1 AAAATCACAATTCAC
33408527 TAGAAGTGAG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (38 bp):
AAAATCACAATTCACCCCAACAGTAATGGGTCAAAACA
Found at i:33415538 original size:24 final size:24
Alignment explanation
Indices: 33415501--33415562 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
33415491 GGAAGCTCAT
*
33415501 AAAGAGC-CTATAACGAGTAGCTCT
1 AAAGAGCACT-TAACGAGTAGCTCC
* *
33415525 GAAGAGCACTTAACGGGTAGCTCC
1 AAAGAGCACTTAACGAGTAGCTCC
33415549 AAAGAGCACTTAAC
1 AAAGAGCACTTAAC
33415563 AGGAAGCACC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 31 0.94
25 2 0.06
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (24 bp):
AAAGAGCACTTAACGAGTAGCTCC
Found at i:33421809 original size:24 final size:25
Alignment explanation
Indices: 33421782--33421829 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
33421772 GGATGCTCCG
*
33421782 AAGAGCTAT-TAACAGGAAGCTCGC
1 AAGAACTATATAACAGGAAGCTCGC
*
33421806 AAGAACTATATAACGGGAAGCTCG
1 AAGAACTATATAACAGGAAGCTCG
33421830 AGAGGGATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.17
Consensus pattern (25 bp):
AAGAACTATATAACAGGAAGCTCGC
Found at i:33423313 original size:3 final size:3
Alignment explanation
Indices: 33423305--33423381 Score: 82
Period size: 3 Copynumber: 25.7 Consensus size: 3
33423295 AAGCGAAAAC
* * * * *
33423305 ATA ATA ATA ATA ACA ATA ATA TTA ATA ATA ATA CTA ATA ATA ATA GTG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** *
33423353 AGG ATA ATA ATA ATA GTA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
33423382 GAAGGTAATG
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33423389 original size:18 final size:17
Alignment explanation
Indices: 33423327--33423390 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 17
33423317 ACAATAATAT
*
33423327 TAATAATAAT-A-CTAA
1 TAATAATAATGAGGTAA
*
33423342 TAATAATAGTGAGG--A
1 TAATAATAATGAGGTAA
33423357 TAATAATAAT-A-GTAA
1 TAATAATAATGAGGTAA
33423372 TAATAATAATGAAGGTAA
1 TAATAATAATG-AGGTAA
33423390 T
1 T
33423391 GTACGAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
13 1 0.03
14 1 0.03
15 30 0.77
16 1 0.03
17 1 0.03
18 5 0.13
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (17 bp):
TAATAATAATGAGGTAA
Found at i:33424046 original size:5 final size:5
Alignment explanation
Indices: 33424036--33424061 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33424026 GATAAACAAA
33424036 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
33424062 GGAAAAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:33424471 original size:18 final size:18
Alignment explanation
Indices: 33424448--33424484 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
33424438 TTTGGGCTTC
33424448 GGTTTGGGTTGTAATTGG
1 GGTTTGGGTTGTAATTGG
*
33424466 GGTTTGGGTTGTATTTGG
1 GGTTTGGGTTGTAATTGG
33424484 G
1 G
33424485 TAGGCTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.00, G:0.46, T:0.46
Consensus pattern (18 bp):
GGTTTGGGTTGTAATTGG
Found at i:33425384 original size:92 final size:91
Alignment explanation
Indices: 33425264--33425445 Score: 294
Period size: 92 Copynumber: 2.0 Consensus size: 91
33425254 AATTTGTATC
* * *
33425264 TTCAACTTGCCTACTGCAACTTCATGGGGATAAGG-TTTTCTATTTTAACCTGCTCTACTACAAC
1 TTCAACTTGCCCACTGCAACTTCATGGGGATAAGGCTTGT-TATTTCAACCTGCTCTACTACAAC
33425328 TTCAGAGAGACAAAGTTTGAAATGATA
65 TTCAGAGAGACAAAGTTTGAAATGATA
* *
33425355 TTCAACTTGCCCCATTGCAACTTCATGGGGATAAGGCTTGTTATTTCAACCTGCTCTACTATAAC
1 TTCAACTTG-CCCACTGCAACTTCATGGGGATAAGGCTTGTTATTTCAACCTGCTCTACTACAAC
33425420 TTCAGAGAGACAAAGTTTGAAATGAT
65 TTCAGAGAGACAAAGTTTGAAATGAT
33425446 CTGCTCTACT
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
91 9 0.11
92 72 0.86
93 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (91 bp):
TTCAACTTGCCCACTGCAACTTCATGGGGATAAGGCTTGTTATTTCAACCTGCTCTACTACAACT
TCAGAGAGACAAAGTTTGAAATGATA
Found at i:33425862 original size:46 final size:46
Alignment explanation
Indices: 33425790--33426124 Score: 496
Period size: 46 Copynumber: 7.3 Consensus size: 46
33425780 GGGTGACAGA
* * *
33425790 ATCTGCAATCTTTGGTCTACTTCGCTGCCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
* * *
33425836 ATCTGCTATCTTTGATCTGCTCCGCTGCCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
* **
33425882 ATCTACTATCTTCGATCTACTTCATTGCCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
*
33425928 ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
33425974 ATCTGCTATCTTCGATCTAC-TCTGCTGCCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-GCTGCCAAATACAGGAAGACAAG
* *
33426020 ATCTG-TAATCTTCGACCTACTTCGCTGCCAAATACAAGAAGACAAG
1 ATCTGCT-ATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
*
33426066 ATCTG-TAATCTTCGATCTACTTTGCTGCCAAATACAGGAAGACAAG
1 ATCTGCT-ATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
*
33426112 ATCTGCTGTCTTC
1 ATCTGCTATCTTC
33426125 AACCAGCTCT
Statistics
Matches: 264, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
45 2 0.01
46 259 0.98
47 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (46 bp):
ATCTGCTATCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAG
Found at i:33426249 original size:88 final size:88
Alignment explanation
Indices: 33426100--33426810 Score: 814
Period size: 88 Copynumber: 8.2 Consensus size: 88
33426090 CTGCCAAATA
* * * * * *
33426100 CAGGAAGACAAGATCTGCTGTCTTCAACCAGCTCTACTATAACCCAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTC
33426165 TTCGATCTGCTTCGCTGTCAAGG
66 TTCGATCTGCTTCGCTGTCAAGG
* * * *
33426188 CAGGAAGGCGAGATCTGTTGTCTTCAACCAGTTCCACTACAACCGAAAGAGGCAAAGTTTGTATC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTC
*
33426253 TTCAATCTGCTTCGCTGTCAAGG
66 TTCGATCTGCTTCGCTGTCAAGG
* * * * *
33426276 CAAGAAGACAAGATCTGTTGTCTTCAACCAGCTGCACTATAACC-AAGAGAGACAAGGTTTGTGT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAA-AGAGGCAAGGTTTGTGT
* *
33426340 CTTCGATCTACTTTGCTGTCAAGG
65 CTTCGATCTGCTTCGCTGTCAAGG
33426364 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCG--AGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTC
33426427 TTCGATCTGCTTCGCTGTCAAGG
66 TTCGATCTGCTTCGCTGTCAAGG
* * * ** * *
33426450 TAGGAAGGCAAGATCTGTGGTCTTCAACCAGCTCCACTGCAACCGATGGAGGCAATGTTT-TGTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTC
* * *
33426514 TTCGATCTGCTTCGCTATTAACG
66 TTCGATCTGCTTCGCTGTCAAGG
* * * ** *
33426537 CAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGGAGGTAAGGCTTTGT-T
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGG-TTTGTGT
* * *
33426600 -TTCGATCTGCTTTGCTGTTAACG
65 CTTCGATCTGCTTCGCTGTCAAGG
* * * *
33426623 CAGGAAGACAAGATCTGAT-TCTTTAACCAGCTCCACTGCAACC-AATAGAGGCAAGGCTTTGT-
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAA-AGAGGCAAGG-TTTGTG
* *
33426685 T-TTCGATCTGCTTCGCTGTTAACG
64 TCTTCGATCTGCTTCGCTGTCAAGG
* * ** * ** * * **
33426709 CAGGAAGGCAAGATCTGCTATCTTTGACCTGCTCCACTACAACCGATGGAGGAAAGGCTCATGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTC
*
33426774 TTCGATCTGCTTCGCTGTCAATG
66 TTCGATCTGCTTCGCTGTCAAGG
33426797 CAGGAAGGCAAGAT
1 CAGGAAGGCAAGAT
33426811 GTGTAATCTT
Statistics
Matches: 546, Mismatches: 66, Indels: 22
0.86 0.10 0.03
Matches are distributed among these distances:
85 1 0.00
86 232 0.42
87 75 0.14
88 238 0.44
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (88 bp):
CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTC
TTCGATCTGCTTCGCTGTCAAGG
Found at i:33426303 original size:176 final size:176
Alignment explanation
Indices: 33426100--33426810 Score: 841
Period size: 174 Copynumber: 4.1 Consensus size: 176
33426090 CTGCCAAATA
* * * *
33426100 CAGGAAGACAAGATCTGCTGTCTTCAACCAGCTCTACTATAACCCAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCAAGAGAGGCAAGGTTTGTGTC
* * * *
33426165 TTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCGAGATCTGTTGTCTTCAACCAGTTCCACTACAA
66 TTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTACAA
* * *
33426230 CCGAAAGAGGCAAAGTTTGTATCTTCAATCTGCTTCGCTGTCAAGG
131 CCGATAGAGGCAAAGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
* * * *
33426276 CAAGAAGACAAGATCTGTTGTCTTCAACCAGCTGCACTATAACCAAGAGAGACAAGGTTTGTGTC
1 CAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCAAGAGAGGCAAGGTTTGTGTC
* * * *
33426341 TTCGATCTACTTTGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA
66 TTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTACAA
*
33426406 CCG--AGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
131 CCGATAGAGGCAAAGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
* * * * * *
33426450 TAGGAAGGCAAGATCTGTGGTCTTCAACCAGCTCCACTGCAACCGATG-GAGGCAATGTTT-TGT
1 CAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC-AAGAGAGGCAAGGTTTGTGT
* * * * *
33426513 TTTCGATCTGCTTCGCTATTAACGCAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCA
65 CTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTACA
* * * * * *
33426577 ACCGATGGAGGTAAGGCTTTGT-T-TTCGATCTGCTTTGCTGTTAACG
130 ACCGATAGAGGCAAAG-TTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
* * * *
33426623 CAGGAAGACAAGATCTGAT-TCTTTAACCAGCTCCACTGCAACCAATAGAGGCAAGGCTTTGT-T
1 CAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCAAGAGAGGCAAGG-TTTGTGT
* * ** *
33426686 -TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTGACCTGCTCCACTACA
65 CTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTACA
* * ** *
33426750 ACCGATGGAGG-AAAGGCTCATGTCTTCGATCTGCTTCGCTGTCAATG
130 ACCGATAGAGGCAAA-GTTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
*
33426797 CAGGAAGGCAAGAT
1 CAGGAAGACAAGAT
33426811 GTGTAATCTT
Statistics
Matches: 467, Mismatches: 57, Indels: 24
0.85 0.10 0.04
Matches are distributed among these distances:
171 1 0.00
172 99 0.21
173 109 0.23
174 128 0.27
175 7 0.01
176 123 0.26
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (176 bp):
CAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCAAGAGAGGCAAGGTTTGTGTC
TTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTACAA
CCGATAGAGGCAAAGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
Found at i:33426455 original size:86 final size:86
Alignment explanation
Indices: 33426100--33426810 Score: 797
Period size: 86 Copynumber: 8.2 Consensus size: 86
33426090 CTGCCAAATA
* * * *
33426100 CAGGAAGACAAGATCTGCTGTCTTCAACCAGCTCTACTATAACCCAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA-CC-GAGAGGCAAGGTTTGTGTC
33426165 TTCGATCTGCTTCGCTGTCAAGG
64 TTCGATCTGCTTCGCTGTCAAGG
* * * *
33426188 CAGGAAGGCGAGATCTGTTGTCTTCAACCAGTTCCACTACAACCGAAAGAGGCAAAGTTTGTATC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCG--AGAGGCAAGGTTTGTGTC
*
33426253 TTCAATCTGCTTCGCTGTCAAGG
64 TTCGATCTGCTTCGCTGTCAAGG
* * * * *
33426276 CAAGAAGACAAGATCTGTTGTCTTCAACCAGCTGCACTATAACCAAGAGAGACAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC--GAGAGGCAAGGTTTGTGTC
* *
33426341 TTCGATCTACTTTGCTGTCAAGG
64 TTCGATCTGCTTCGCTGTCAAGG
33426364 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGGCAAGGTTTGTGTCTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGGCAAGGTTTGTGTCTT
33426429 CGATCTGCTTCGCTGTCAAGG
66 CGATCTGCTTCGCTGTCAAGG
* * * * *
33426450 TAGGAAGGCAAGATCTGTGGTCTTCAACCAGCTCCACTGCAACCGATGGAGGCAATGTTT-TGTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGA--GAGGCAAGGTTTGTGTC
* * *
33426514 TTCGATCTGCTTCGCTATTAACG
64 TTCGATCTGCTTCGCTGTCAAGG
* * * *
33426537 CAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGGAGGTAAGGCTTTGT-T
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGA--GAGGCAAGG-TTTGTGT
* * *
33426600 -TTCGATCTGCTTTGCTGTTAACG
63 CTTCGATCTGCTTCGCTGTCAAGG
* * * * *
33426623 CAGGAAGACAAGATCTGAT-TCTTTAACCAGCTCCACTGCAACCAATAGAGGCAAGGCTTTGT-T
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC--GAGAGGCAAGG-TTTGTGT
* *
33426686 -TTCGATCTGCTTCGCTGTTAACG
63 CTTCGATCTGCTTCGCTGTCAAGG
* * ** * * * **
33426709 CAGGAAGGCAAGATCTGCTATCTTTGACCTGCTCCACTACAACCGATGGAGGAAAGGCTCATGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGA--GAGGCAAGGTTTGTGTC
*
33426774 TTCGATCTGCTTCGCTGTCAATG
64 TTCGATCTGCTTCGCTGTCAAGG
33426797 CAGGAAGGCAAGAT
1 CAGGAAGGCAAGAT
33426811 GTGTAATCTT
Statistics
Matches: 547, Mismatches: 61, Indels: 30
0.86 0.10 0.05
Matches are distributed among these distances:
85 1 0.00
86 235 0.43
87 75 0.14
88 235 0.43
90 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (86 bp):
CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGGCAAGGTTTGTGTCTT
CGATCTGCTTCGCTGTCAAGG
Found at i:33426503 original size:44 final size:43
Alignment explanation
Indices: 33426369--33426504 Score: 118
Period size: 44 Copynumber: 3.1 Consensus size: 43
33426359 CAAGGCAGGA
*
33426369 AGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGA--G
1 AGGCAAGATCTG-TGTCTTCAACCAGCTCCACTGCAACCGATGG
* * * * * * * *
33426411 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA--GGTAGG
1 AGGCAAGATCTGTGTCTTCAACCAGCTCCACTG-CAACCGAT-GG
33426454 AAGGCAAGATCTGTGGTCTTCAACCAGCTCCACTGCAACCGATGG
1 -AGGCAAGATCTGT-GTCTTCAACCAGCTCCACTGCAACCGATGG
33426499 AGGCAA
1 AGGCAA
33426505 TGTTTTGTTT
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
40 1 0.01
41 15 0.22
42 13 0.19
43 1 0.01
44 20 0.29
45 17 0.25
46 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.24
Consensus pattern (43 bp):
AGGCAAGATCTGTGTCTTCAACCAGCTCCACTGCAACCGATGG
Found at i:33427827 original size:102 final size:104
Alignment explanation
Indices: 33427590--33427909 Score: 500
Period size: 102 Copynumber: 3.0 Consensus size: 104
33427580 AAAATGCTTC
* * * *
33427590 AAAAAGATTATCAAAATGGACAAGATGAAATTTTATTGAGAACAATGCTCAAAATGAATAAATCA
1 AAAAAGATTATCACAATGGAAAAGATGAAATTTTATTGAGAACAAGGCTC-AAA-GAATAAATTA
* *
33427655 ATCAAGATAGCAAATCTTGCTAAGATACGAACTGAATAAGATG
64 ATCAAGATAGCAAATTTTGCTAAGATAAG-A-TGAATAAGATG
*
33427698 AAAAAGATTATCACAATGGAAAAGATGAAGTTTTATTGAGAACAAGGCTC-AA-AATAAATTAAT
1 AAAAAGATTATCACAATGGAAAAGATGAAATTTTATTGAGAACAAGGCTCAAAGAATAAATTAAT
33427761 CAAGATAGCAAATTTTGCTAAGATAAGATGAATAAGATG
66 CAAGATAGCAAATTTTGCTAAGATAAGATGAATAAGATG
*
33427800 AAAAAGATTATCACAATGGATAAGATGAAATTTTATTGAGAACAAGGCTCAAAATGAATAAATTA
1 AAAAAGATTATCACAATGGAAAAGATGAAATTTTATTGAGAACAAGGCTC-AAA-GAATAAATTA
33427865 ATCAAGATAGCAAATTTTGCTAAGATAAGATGAATAAGATG
64 ATCAAGATAGCAAATTTTGCTAAGATAAGATGAATAAGATG
33427906 AAAA
1 AAAA
33427910 TAGGTGCCCC
Statistics
Matches: 199, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
102 59 0.30
103 1 0.01
104 37 0.19
106 56 0.28
108 46 0.23
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.25
Consensus pattern (104 bp):
AAAAAGATTATCACAATGGAAAAGATGAAATTTTATTGAGAACAAGGCTCAAAGAATAAATTAAT
CAAGATAGCAAATTTTGCTAAGATAAGATGAATAAGATG
Found at i:33428191 original size:5 final size:5
Alignment explanation
Indices: 33428181--33428269 Score: 85
Period size: 5 Copynumber: 17.4 Consensus size: 5
33428171 CTCCTTTTTC
*
33428181 TTCTT TTCTT TTCTT TTCTTTT TTCTT TTCTT TT-TT CTCTT TTCTTTT
1 TTCTT TTCTT TTCTT TTC--TT TTCTT TTCTT TTCTT TTCTT TTC--TT
* *
33428229 TTCTT TTTTT TTCTT TT-TT TTCTT TT-TT CTTTTT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT -TTCTT TTCTT TT
33428270 TGTTTGTTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
4 9 0.13
5 50 0.70
6 2 0.03
7 10 0.14
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTCTT
Found at i:33428206 original size:7 final size:7
Alignment explanation
Indices: 33428175--33428270 Score: 101
Period size: 7 Copynumber: 13.6 Consensus size: 7
33428165 TGGCCTCTCC
33428175 TTTTTCT
1 TTTTTCT
33428182 TCTTTTCT
1 T-TTTTCT
33428190 TTTCTT-T
1 TTT-TTCT
33428197 TCTTTT-T
1 T-TTTTCT
33428204 TCTTTTCT
1 T-TTTTCT
33428212 TTTTTCT
1 TTTTTCT
*
33428219 CTTTTCT
1 TTTTTCT
33428226 TTTTTCT
1 TTTTTCT
33428233 TTTTT-T
1 TTTTTCT
*
33428239 TTCTT-T
1 TTTTTCT
33428245 TTTTTCT
1 TTTTTCT
33428252 TTTTTCTT
1 TTTTTC-T
33428260 TTTTTCT
1 TTTTTCT
33428267 TTTT
1 TTTT
33428271 GTTTGTTTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
6 10 0.13
7 49 0.62
8 20 0.25
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:33428270 original size:31 final size:34
Alignment explanation
Indices: 33428175--33428282 Score: 91
Period size: 33 Copynumber: 3.1 Consensus size: 34
33428165 TGGCCTCTCC
*
33428175 TTTTTCTTCTTTTCTT-TTCTTTTCTTTTTTCTTTTCT
1 TTTTTCTT-TTTTCTTCTTTTTTTCTTTTTTC--TT-T
*
33428212 TTTTTCTCTTTTCTT-TTTTCTTT-TTTTTTCTTT
1 TTTTTCTTTTTTCTTCTTTT-TTTCTTTTTTCTTT
*
33428245 TTTTTCTTTTTTCTT-TTTTTCTT-TTTGTTTGTTT
1 TTTTTCTTTTTTCTTCTTTTT-TTCTTT-TTTCTTT
33428279 TTTT
1 TTTT
33428283 ATTTGAACAT
Statistics
Matches: 64, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
32 1 0.02
33 24 0.38
34 12 0.19
36 17 0.27
37 10 0.16
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (34 bp):
TTTTTCTTTTTTCTTCTTTTTTTCTTTTTTCTTT
Found at i:33428279 original size:10 final size:10
Alignment explanation
Indices: 33428184--33428281 Score: 85
Period size: 10 Copynumber: 9.4 Consensus size: 10
33428174 CTTTTTCTTC
*
33428184 TTTTCTTTTC
1 TTTTCTTTTT
33428194 TTTTCTTTTTT
1 TTTTC-TTTTT
33428205 CTTTTCTTTTT
1 -TTTTCTTTTT
*
33428216 TCTCTT-TTCTT
1 T-T-TTCTTTTT
33428227 TTTTCTTTTT
1 TTTTCTTTTT
33428237 TTTTC-TTTT
1 TTTTCTTTTT
33428246 TTTTCTTTTT
1 TTTTCTTTTT
33428256 TCTTT-TTTTCT
1 T-TTTCTTTT-T
*
33428267 TTTTGTTTGTT
1 TTTTCTTT-TT
33428278 TTTT
1 TTTT
33428282 TATTTGAACA
Statistics
Matches: 75, Mismatches: 3, Indels: 19
0.77 0.03 0.20
Matches are distributed among these distances:
9 11 0.15
10 28 0.37
11 28 0.37
12 8 0.11
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:33428279 original size:15 final size:14
Alignment explanation
Indices: 33428174--33428280 Score: 88
Period size: 15 Copynumber: 7.0 Consensus size: 14
33428164 TTGGCCTCTC
* *
33428174 CTTTTTCTTCTTTT
1 CTTTTTTTTTTTTT
33428188 CTTTTCTTTTCTTTTTT
1 C-TTT-TTTT-TTTTTT
* *
33428205 CTTTTCTTTTTTCT
1 CTTTTTTTTTTTTT
33428219 CTTTTCTTTTTTCTTT
1 CTTTT-TTTTTT-TTT
*
33428235 TTTTTTCTTTTTTTT
1 CTTTTT-TTTTTTTT
33428250 CTTTTTTCTTTTTTT
1 CTTTTTT-TTTTTTT
33428265 CTTTTTGTTTGTTTTT
1 CTTTTT-TTT-TTTTT
33428281 TTATTTGAAC
Statistics
Matches: 76, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
14 12 0.16
15 35 0.46
16 23 0.30
17 6 0.08
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (14 bp):
CTTTTTTTTTTTTT
Found at i:33428282 original size:26 final size:25
Alignment explanation
Indices: 33428175--33428269 Score: 131
Period size: 26 Copynumber: 3.7 Consensus size: 25
33428165 TGGCCTCTCC
*
33428175 TTTTTCTTCTTTTCTTTTCTTTTCT
1 TTTTTCTTTTTTTCTTTTCTTTTCT
33428200 TTTTTCTTTTCTTT-TTTCTCTTTTCT
1 TTTTTCTTTT-TTTCTTT-TCTTTTCT
33428226 TTTTTCTTTTTTTTTCTTTT-TTTTCT
1 TTTTTC--TTTTTTTCTTTTCTTTTCT
33428252 TTTTTCTTTTTTTCTTTT
1 TTTTTCTTTTTTTCTTTT
33428270 TGTTTGTTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 11
0.84 0.01 0.14
Matches are distributed among these distances:
24 12 0.19
25 12 0.19
26 29 0.45
27 4 0.06
28 7 0.11
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (25 bp):
TTTTTCTTTTTTTCTTTTCTTTTCT
Found at i:33428297 original size:1 final size:1
Alignment explanation
Indices: 33428184--33428282 Score: 63
Period size: 1 Copynumber: 99.0 Consensus size: 1
33428174 CTTTTTCTTC
* * * * * * * * * *
33428184 TTTTCTTTTCTTTTCTTTTTTCTTTTCTTTTTTCTCTTTTCTTTTTTCTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
33428249 TCTTTTTTCTTTTTTTCTTTTTGTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33428283 ATTTGAACAT
Statistics
Matches: 68, Mismatches: 30, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (1 bp):
T
Found at i:33428402 original size:18 final size:18
Alignment explanation
Indices: 33428379--33428415 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
33428369 ATAAAGCCTC
33428379 GGTTTGGGTTGTAATTGG
1 GGTTTGGGTTGTAATTGG
*
33428397 GGTTTGGGTTGTATTTGG
1 GGTTTGGGTTGTAATTGG
33428415 G
1 G
33428416 TAGGCTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.00, G:0.46, T:0.46
Consensus pattern (18 bp):
GGTTTGGGTTGTAATTGG
Found at i:33431309 original size:12 final size:12
Alignment explanation
Indices: 33431292--33431316 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33431282 TTTCTATTCT
33431292 TTGTGGAAAACA
1 TTGTGGAAAACA
33431304 TTGTGGAAAACA
1 TTGTGGAAAACA
33431316 T
1 T
33431317 GAGACATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (12 bp):
TTGTGGAAAACA
Found at i:33431716 original size:18 final size:18
Alignment explanation
Indices: 33431681--33431716 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33431671 TATGTTTTAC
*
33431681 TTATATATTATATTATTT
1 TTATATATTATATAATTT
*
33431699 TTATATATTATGTAATTT
1 TTATATATTATATAATTT
33431717 ATTTCACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTATATATTATATAATTT
Found at i:33432316 original size:26 final size:28
Alignment explanation
Indices: 33432270--33432321 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
33432260 TTATATTAGT
33432270 ATTTTATATATTTTTATAATTAAATTTA
1 ATTTTATATATTTTTATAATTAAATTTA
* *
33432298 ATTTTA-ATTTTTTTA-AATTGAATT
1 ATTTTATATATTTTTATAATTAAATT
33432322 CGGTCAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 8 0.36
28 6 0.27
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (28 bp):
ATTTTATATATTTTTATAATTAAATTTA
Found at i:33432528 original size:62 final size:62
Alignment explanation
Indices: 33432431--33432554 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
33432421 AACACACATG
33432431 TTTTCCTCTATTGTTGGAATACAATTCATTCTTTATTGGGAAAGGAAATTCTAATTAATTTT
1 TTTTCCTCTATTGTTGGAATACAATTCATTCTTTATTGGGAAAGGAAATTCTAATTAATTTT
* *
33432493 TTTTCCTCTATTGTTGGAATATAGTTCATTCTTTATTGGGAAAGGAAATTCTAATTAATTTT
1 TTTTCCTCTATTGTTGGAATACAATTCATTCTTTATTGGGAAAGGAAATTCTAATTAATTTT
33432555 GGACATTATT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (62 bp):
TTTTCCTCTATTGTTGGAATACAATTCATTCTTTATTGGGAAAGGAAATTCTAATTAATTTT
Found at i:33434909 original size:27 final size:27
Alignment explanation
Indices: 33434874--33434937 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
33434864 GTCTTTAACA
*
33434874 TTTAT-TTTATAATTAA-TTATT-ATT
1 TTTATATTTATAATAAAGTTATTAATT
33434898 TAATTATATTTA-AATAAAGTTATTAATT
1 T--TTATATTTATAATAAAGTTATTAATT
33434926 TTT-TATTTATAA
1 TTTATATTTATAA
33434938 GTCGTCCACT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
24 1 0.03
25 6 0.18
26 13 0.39
27 9 0.27
28 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTATATTTATAATAAAGTTATTAATT
Found at i:33436481 original size:21 final size:22
Alignment explanation
Indices: 33436452--33436497 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
33436442 AAATTTAATT
33436452 TTTATA-TTTTTAATTTTAAGAA
1 TTTATATTTTTTAATTTTAA-AA
*
33436474 TTTA-ATTTTTTATTTTTAAAA
1 TTTATATTTTTTAATTTTAAAA
33436495 TTT
1 TTT
33436498 TAAAATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTATATTTTTTAATTTTAAAA
Found at i:33436490 original size:29 final size:29
Alignment explanation
Indices: 33436442--33436524 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
33436432 GAGAGATTGG
*
33436442 AAATTTAATTTTTATATTTT-TAATTTTA
1 AAATTTAATTTTTATATTTTAAAATTTTA
33436470 AGAATTTAATTTTT-TATTTTTAAAATTTTA
1 A-AATTTAATTTTTATA-TTTTAAAATTTTA
* * *
33436500 AAATTT-ATGTTAAAATTTTAAAATT
1 AAATTTAATTTTTATATTTTAAAATT
33436525 ATTTTATTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
28 17 0.36
29 22 0.47
30 8 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
AAATTTAATTTTTATATTTTAAAATTTTA
Found at i:33444188 original size:18 final size:18
Alignment explanation
Indices: 33444165--33444201 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
33444155 ATCCAATAAC
33444165 TCATTCTTGATATAATTT
1 TCATTCTTGATATAATTT
33444183 TCATTCTTGATATAATTT
1 TCATTCTTGATATAATTT
33444201 T
1 T
33444202 GAAATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57
Consensus pattern (18 bp):
TCATTCTTGATATAATTT
Found at i:33447938 original size:22 final size:22
Alignment explanation
Indices: 33447912--33447965 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
33447902 AACAAGAAAC
* **
33447912 AAAAGACAGAAGAACGAAGAAG
1 AAAAGAAAGAAGAAAAAAGAAG
33447934 AAAAGAAAGAAGAAAAAAGAAG
1 AAAAGAAAGAAGAAAAAAGAAG
33447956 AAAAGCAAAG
1 AAAAG-AAAG
33447966 TGCCAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.70, C:0.06, G:0.24, T:0.00
Consensus pattern (22 bp):
AAAAGAAAGAAGAAAAAAGAAG
Found at i:33447945 original size:15 final size:14
Alignment explanation
Indices: 33447921--33447954 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
33447911 CAAAAGACAG
*
33447921 AAGAACGAAGAAGAA
1 AAGAAAGAAGAA-AA
33447936 AAGAAAGAAGAAAA
1 AAGAAAGAAGAAAA
33447950 AAGAA
1 AAGAA
33447955 GAAAAGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (14 bp):
AAGAAAGAAGAAAA
Found at i:33456563 original size:13 final size:13
Alignment explanation
Indices: 33456545--33456571 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33456535 AGGGTTTTGA
33456545 AGAGAGAAACGTG
1 AGAGAGAAACGTG
33456558 AGAGAGAAACGTG
1 AGAGAGAAACGTG
33456571 A
1 A
33456572 AGAATGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.37, T:0.07
Consensus pattern (13 bp):
AGAGAGAAACGTG
Found at i:33463951 original size:38 final size:38
Alignment explanation
Indices: 33463912--33464015 Score: 95
Period size: 29 Copynumber: 2.9 Consensus size: 38
33463902 ATTTATTTTA
33463912 AAAATTAAAATTAAAATTAAAAAAGTATTTTAAAA-TT
1 AAAATTAAAATTAAAATTAAAAAAGTATTTTAAAATTT
33463949 -AAA--AAAATT---A--AAAAAAGTATTTTAAAAATTTT
1 AAAATTAAAATTAAAATTAAAAAAGTATTTT-AAAA-TTT
33463981 AAAATTAAAA--AAAATTAAAAAATAGTATTTTAAAA
1 AAAATTAAAATTAAAATT-AAAAA-AGTATTTTAAAA
33464016 GTATTTTAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 24
0.69 0.00 0.31
Matches are distributed among these distances:
29 13 0.24
30 4 0.07
31 1 0.02
32 2 0.04
33 3 0.06
34 6 0.11
35 4 0.07
36 4 0.07
39 9 0.17
40 8 0.15
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (38 bp):
AAAATTAAAATTAAAATTAAAAAAGTATTTTAAAATTT
Found at i:33463970 original size:29 final size:30
Alignment explanation
Indices: 33463905--33463993 Score: 112
Period size: 29 Copynumber: 3.0 Consensus size: 30
33463895 ACCAAAAATT
33463905 TATTTTAAAAATTAAAATTAAAATT-AAAAAAG
1 TATTTTAAAAATT-AAA--AAAATTAAAAAAAG
33463937 TATTTT-AAAATTAAAAAAATTAAAAAAAG
1 TATTTTAAAAATTAAAAAAATTAAAAAAAG
**
33463966 TATTTTAAAAATT-TTAAAATTAAAAAAA
1 TATTTTAAAAATTAAAAAAATTAAAAAAA
33463994 ATTAAAAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
28 6 0.11
29 26 0.49
30 9 0.17
31 6 0.11
32 6 0.11
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (30 bp):
TATTTTAAAAATTAAAAAAATTAAAAAAAG
Found at i:33463992 original size:39 final size:39
Alignment explanation
Indices: 33463932--33464042 Score: 165
Period size: 40 Copynumber: 2.8 Consensus size: 39
33463922 TTAAAATTAA
33463932 AAAAGTATTTTAAAATTAAAAAAATTAAAAAAAGTATTTT
1 AAAAG-ATTTTAAAATTAAAAAAATTAAAAAAAGTATTTT
33463972 AAAA-ATTTTAAAATTAAAAAAAATTAAAAAATAGTATTTT
1 AAAAGATTTTAAAATT-AAAAAAATTAAAAAA-AGTATTTT
33464012 AAAAGTATTTTAAAA-TAAAAAAA-TAAAAAAA
1 AAAAG-ATTTTAAAATTAAAAAAATTAAAAAAA
33464043 TAAAAAACTT
Statistics
Matches: 67, Mismatches: 0, Indels: 10
0.87 0.00 0.13
Matches are distributed among these distances:
38 12 0.18
39 22 0.33
40 23 0.34
41 1 0.01
42 9 0.13
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (39 bp):
AAAAGATTTTAAAATTAAAAAAATTAAAAAAAGTATTTT
Found at i:33464039 original size:7 final size:8
Alignment explanation
Indices: 33464023--33464049 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
33464013 AAAGTATTTT
33464023 AAAATAAA
1 AAAATAAA
33464031 AAAATAAA
1 AAAATAAA
33464039 AAAATAAA
1 AAAATAAA
33464047 AAA
1 AAA
33464050 CTTTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:33471101 original size:22 final size:22
Alignment explanation
Indices: 33471075--33471124 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
33471065 ACCGAAATTT
*
33471075 CATGAATTTGAGTTTAAAAGGG
1 CATGAATTTGAGTTAAAAAGGG
*
33471097 CATGAATTTGAGTTAAAAATGG
1 CATGAATTTGAGTTAAAAAGGG
33471119 CATGAA
1 CATGAA
33471125 AAAGTCTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (22 bp):
CATGAATTTGAGTTAAAAAGGG
Found at i:33477482 original size:10 final size:10
Alignment explanation
Indices: 33477459--33477506 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
33477449 GAATCTATTG
* *
33477459 AAAATAAATA
1 AAAATTAATT
33477469 AAAATTAATT
1 AAAATTAATT
*
33477479 AAAATTTATTAT
1 AAAA-TTAAT-T
33477491 AAAATTAATT
1 AAAATTAATT
33477501 AAAATT
1 AAAATT
33477507 CAACATGTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 19 0.59
11 8 0.25
12 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:33486332 original size:18 final size:19
Alignment explanation
Indices: 33486306--33486342 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
33486296 AATTTTGGAA
33486306 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
33486324 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
33486343 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:33495299 original size:32 final size:32
Alignment explanation
Indices: 33495263--33495323 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
33495253 CGTTTTTGCA
* *
33495263 CACAAACGCTGCTAAAGAACATGATCTTTTAT
1 CACAAACGCCGCTAAAGAACATGACCTTTTAT
*
33495295 CACAAATGCCGCTAAAGAACATGACCTTT
1 CACAAACGCCGCTAAAGAACATGACCTTT
33495324 AGCAACACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.25
Consensus pattern (32 bp):
CACAAACGCCGCTAAAGAACATGACCTTTTAT
Found at i:33495396 original size:43 final size:43
Alignment explanation
Indices: 33495288--33495438 Score: 187
Period size: 43 Copynumber: 3.5 Consensus size: 43
33495278 AGAACATGAT
* * **
33495288 CTTTTATCACAAATGCCGCTAAAGAACATGACCTTTAGCAACA
1 CTTTTATCACAAACGCCGCTAAAGAACATGATCTTTAGCGGCA
* ** *
33495331 CTTTT-TCACAAACGTCGCTAAAGGTCATGTTCTTTAGCGGCA
1 CTTTTATCACAAACGCCGCTAAAGAACATGATCTTTAGCGGCA
* * * *
33495373 CTTTTAACACAAATGCCGCTAAAGAACATAATCTTTAGCGGCG
1 CTTTTATCACAAACGCCGCTAAAGAACATGATCTTTAGCGGCA
33495416 CTTTTATCACAAACGCCGCTAAA
1 CTTTTATCACAAACGCCGCTAAA
33495439 AGTACCGTTC
Statistics
Matches: 89, Mismatches: 18, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 34 0.38
43 55 0.62
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
CTTTTATCACAAACGCCGCTAAAGAACATGATCTTTAGCGGCA
Found at i:33495451 original size:43 final size:43
Alignment explanation
Indices: 33495331--33495458 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 43
33495321 TTTAGCAACA
* * * *
33495331 CTTTT-TCACAAACGTCGCTAAAGGT-CATGTTCTTTAGCGGCA
1 CTTTTATCACAAACGCCGCTAAAAGTAC-CGTTCTTTAGCGGCG
* * * *
33495373 CTTTTAACACAAATGCCGCT-AAAG-AACATAATCTTTAGCGGCG
1 CTTTTATCACAAACGCCGCTAAAAGTACCGT--TCTTTAGCGGCG
*
33495416 CTTTTATCACAAACGCCGCTAAAAGTACCGTTCTTTGGCGGCG
1 CTTTTATCACAAACGCCGCTAAAAGTACCGTTCTTTAGCGGCG
33495459 TTTATGAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 8 0.12
43 51 0.76
44 4 0.06
45 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTTTATCACAAACGCCGCTAAAAGTACCGTTCTTTAGCGGCG
Found at i:33495474 original size:85 final size:85
Alignment explanation
Indices: 33495288--33495457 Score: 225
Period size: 85 Copynumber: 2.0 Consensus size: 85
33495278 AGAACATGAT
* * *
33495288 CTTTTATCACAAATGCCGCTAAAGAACATGACCTTTAGCAACACTTTTTCACAAACGTCGCTAAA
1 CTTTTAACACAAATGCCGCTAAAGAACATAACCTTTAGCAACACTTTTTCACAAACGCCGCTAAA
* *
33495353 GGTCATGTTCTTTAGCGGCA
66 AGTCACGTTCTTTAGCGGCA
* ** *
33495373 CTTTTAACACAAATGCCGCTAAAGAACATAATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
1 CTTTTAACACAAATGCCGCTAAAGAACATAACCTTTAGCAACACTTTT-TCACAAACGCCGCTAA
*
33495438 AAGT-ACCGTTCTTTGGCGGC
65 AAGTCA-CGTTCTTTAGCGGC
33495458 GTTTATGAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
85 43 0.59
86 30 0.41
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (85 bp):
CTTTTAACACAAATGCCGCTAAAGAACATAACCTTTAGCAACACTTTTTCACAAACGCCGCTAAA
AGTCACGTTCTTTAGCGGCA
Found at i:33495526 original size:16 final size:16
Alignment explanation
Indices: 33495507--33495540 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33495497 AAATATTAAA
*
33495507 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
33495523 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
33495539 TA
1 TA
33495541 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:33496816 original size:22 final size:22
Alignment explanation
Indices: 33496786--33496828 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
33496776 ACACCAAAAC
*
33496786 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
*
33496808 AGGCCTTTAGCGGTGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
33496829 AGCGCCGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:33497122 original size:86 final size:86
Alignment explanation
Indices: 33497010--33497409 Score: 319
Period size: 86 Copynumber: 4.6 Consensus size: 86
33497000 TTAGTGGAAG
* * * * * * * * **
33497010 CGCCGCTAA-AGACCCTGATCTTTAGCGGCG-TTTGTGCTAGAAGCGCCGCTATAGATCAGGGTC
1 CGCCGC-AATAGACCCTGATCTATAGCGGCGCTTTG-ACCACAAACGCCACTAAAGAACAGAATC
* * *
33497073 TTTAGCGGCGTTTTTTTCTAAAA
64 TTTAGCGGCGCTTTCTCCTAAAA
* **
33497096 CGCCGCAATAGACCTTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTAATCTT
1 CGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACAGAATCTT
33497161 TAGCGGCGCTTTCTCCTAAAA
66 TAGCGGCGCTTTCTCCTAAAA
* * * **
33497182 CGGCACAATAGACCCTGATCTATAGCGGCGCTTCGACCACAAAACGCCACTAAAGAACCTAATCT
1 CGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCAC-AAACGCCACTAAAGAACAGAATCT
* *
33497247 TTAGCGGCGC-TTCGACCACAAAA
65 TTAGCGGCGCTTTC-TCC-TAAAA
* * * * ** * * *
33497270 CGCCACTAA-AGAACCTAATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACCATG-ATC
1 CGCCGC-AATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACA-GAATC
* *
33497333 TTTAGTGGCGCTTTTTCC-ACAAA
64 TTTAGCGGCGCTTTCTCCTA-AAA
* * * * *
33497356 CGCCGTTAA-AGACCCTTATCTTTAGCGGCGCTTTGACCAAAAATGCCACTAAAG
1 CGCCG-CAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAG
33497410 GCCAACACCT
Statistics
Matches: 259, Mismatches: 45, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
85 3 0.01
86 149 0.58
87 70 0.27
88 35 0.14
89 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (86 bp):
CGCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACAGAATCTT
TAGCGGCGCTTTCTCCTAAAA
Found at i:33497212 original size:43 final size:43
Alignment explanation
Indices: 33497075--33497389 Score: 180
Period size: 43 Copynumber: 7.3 Consensus size: 43
33497065 TCAGGGTCTT
* * * * *
33497075 TAGCGGCGTTTTTTTCTAAAACGCCGCAATAGACCTTGATCTA
1 TAGCGGCGCTTTCTCCTAAAACGCCACAATAGACCCTGATCTA
** * * *
33497118 TAGCGGCGCTTTGACC-ACAAACGCCACTAA-AGAACCTAATCTT
1 TAGCGGCGCTTTCTCCTA-AAACGCCAC-AATAGACCCTGATCTA
*
33497161 TAGCGGCGCTTTCTCCTAAAACGGCACAATAGACCCTGATCTA
1 TAGCGGCGCTTTCTCCTAAAACGCCACAATAGACCCTGATCTA
* * * * *
33497204 TAGCGGCGC-TTCGACCACAAAACGCCACTAA-AGAACCTAATCTT
1 TAGCGGCGCTTTC-TCC-TAAAACGCCAC-AATAGACCCTGATCTA
* * * * *
33497248 TAGCGGCGC-TTCGACCACAAAACGCCACTAA-AGAACCTAATCTT
1 TAGCGGCGCTTTC-TCC-TAAAACGCCAC-AATAGACCCTGATCTA
* * * * *
33497292 TAGCGGCGCTTTCCCCAAAAACGCCGCTAA-AGACCATGATCTT
1 TAGCGGCGCTTTCTCCTAAAACGCCAC-AATAGACCCTGATCTA
* * ** * *
33497335 TAGTGGCGCTTTTTCC-ACAAACGCCGTTAA-AGACCCTTATCTT
1 TAGCGGCGCTTTCTCCTA-AAACGCC-ACAATAGACCCTGATCTA
33497378 TAGCGGCGCTTT
1 TAGCGGCGCTTT
33497390 GACCAAAAAT
Statistics
Matches: 227, Mismatches: 35, Indels: 20
0.80 0.12 0.07
Matches are distributed among these distances:
42 7 0.03
43 138 0.61
44 77 0.34
45 5 0.02
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (43 bp):
TAGCGGCGCTTTCTCCTAAAACGCCACAATAGACCCTGATCTA
Found at i:33497409 original size:43 final size:43
Alignment explanation
Indices: 33497113--33497409 Score: 328
Period size: 43 Copynumber: 6.9 Consensus size: 43
33497103 ATAGACCTTG
* *
33497113 ATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGAACCTA
** * * * *
33497156 ATCTTTAGCGGCGCTTTCTCCTAAAACGGCAC-AATAGACCCTG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAA-AGAACCTA
* *
33497199 ATCTATAGCGGCGCTTCGACCACAAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCA-AAAACGCCACTAAAGAACCTA
*
33497243 ATCTTTAGCGGCGCTTCGACCACAAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCA-AAAACGCCACTAAAGAACCTA
** * *
33497287 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAG-ACCATG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGAACC-TA
* ** * ** * *
33497330 ATCTTTAGTGGCGCTTTTTCCACAAACGCCGTTAAAGACCCTT
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGAACCTA
*
33497373 ATCTTTAGCGGCGCTTTGACCAAAAATGCCACTAAAG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
33497410 GCCAACACCT
Statistics
Matches: 213, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
42 5 0.02
43 127 0.60
44 79 0.37
45 2 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGAACCTA
Found at i:33497422 original size:43 final size:42
Alignment explanation
Indices: 33497113--33497451 Score: 266
Period size: 43 Copynumber: 7.9 Consensus size: 42
33497103 ATAGACCTTG
* * *
33497113 ATCTATAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG-ACCAA
** * * **
33497156 ATCTTTAGCGGCGCTTTCTCCTAAAACGGCAC-AATAGACCCTG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAA-AGA-CCAA
* * *
33497199 ATCTATAGCGGCGCTTCGACCACAAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCA-AAAACGCCACTAAAG-ACCAA
* *
33497243 ATCTTTAGCGGCGCTTCGACCACAAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCA-AAAACGCCACTAAAG-ACCAA
** * *
33497287 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACCATG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCA-A
* ** * ** **
33497330 ATCTTTAGTGGCGCTTTTTCCACAAACGCCGTTAAAGACCCTT
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGA-CCAA
* *
33497373 ATCTTTAGCGGCGCTTTGACCAAAAATGCCACTAAAGGCCAA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCAA
* * * ****
33497415 CACCTTTAGTGGCGTTTTTTTTAAAAACGCCACTAAA
1 -ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAA
33497452 TTTGGCAGAT
Statistics
Matches: 242, Mismatches: 46, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
42 8 0.03
43 153 0.63
44 78 0.32
45 3 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (42 bp):
ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCAA
Found at i:33497434 original size:86 final size:85
Alignment explanation
Indices: 33497071--33497409 Score: 335
Period size: 86 Copynumber: 3.9 Consensus size: 85
33497061 TAGATCAGGG
* *
33497071 TCTTTAGCGGCGTTTTTTTCTAAAACGCCGCAATAGA-CCTTGATCTATAGCGGCGCTTTGACCA
1 TCTTTAGCGGCG-CTTTTTCCAAAACGCCGCAATAGACCCTT-ATCTATAGCGGCGCTTTGACCA
* *
33497135 CAAACGCCACTAAAGAACCTAA
64 AAAACGCCACTAAAGAACCAAA
* * * * *
33497157 TCTTTAGCGGCGCTTTCTCCTAAAACGGCACAATAGACCCTGATCTATAGCGGCGCTTCGACCAC
1 TCTTTAGCGGCGCTTTTTCC-AAAACGCCGCAATAGACCCTTATCTATAGCGGCGCTTTGACCA-
*
33497222 AAAACGCCACTAAAGAACCTAA
64 AAAACGCCACTAAAGAACCAAA
*** * * * * **
33497244 TCTTTAGCGGCGCTTCGACCACAAAACGCCACTAA-AGAACCTAATCTTTAGCGGCGCTTTCCCC
1 TCTTTAGCGGCGCTT-TTTC-CAAAACGCCGC-AATAGACCCTTATCTATAGCGGCGCTTTGACC
* *
33497308 AAAAACGCCGCTAAAG-ACCATGA
63 AAAAACGCCACTAAAGAACCA-AA
* * *
33497331 TCTTTAGTGGCGCTTTTTCCACAAACGCCGTTAA-AGACCCTTATCTTTAGCGGCGCTTTGACCA
1 TCTTTAGCGGCGCTTTTTCCA-AAACGCCG-CAATAGACCCTTATCTATAGCGGCGCTTTGACCA
*
33497395 AAAATGCCACTAAAG
64 AAAACGCCACTAAAG
33497410 GCCAACACCT
Statistics
Matches: 211, Mismatches: 33, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
85 7 0.03
86 99 0.47
87 68 0.32
88 34 0.16
89 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (85 bp):
TCTTTAGCGGCGCTTTTTCCAAAACGCCGCAATAGACCCTTATCTATAGCGGCGCTTTGACCAAA
AACGCCACTAAAGAACCAAA
Found at i:33497779 original size:21 final size:21
Alignment explanation
Indices: 33497753--33497845 Score: 114
Period size: 21 Copynumber: 4.4 Consensus size: 21
33497743 TTTTGACCTG
*
33497753 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGCAGC
33497774 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
33497795 CTCTGCTTCCCTCGCTGCAAC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
33497816 CTGTACTTCTCTAGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
33497837 CTCTACTTC
1 CTCTGCTTC
33497846 TCTTACTGCC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.08, C:0.44, G:0.16, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:33497914 original size:66 final size:66
Alignment explanation
Indices: 33497842--33497981 Score: 185
Period size: 66 Copynumber: 2.1 Consensus size: 66
33497832 GCCGCCTCTA
* *
33497842 CTTCTCTTACTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCT
1 CTTCTCTCACTGCCACATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTTGAACCT
33497905 CAG
64 CAG
* * * * *
33497908 CTTCTCTCGCTGCTACATCTGCTTTTAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
1 CTTCTCTCACTGCCACATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTCA
33497973 G
66 G
33497974 CTTCTCTC
1 CTTCTCTC
33497982 GATGTTGCCT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
65 1 0.02
66 60 0.92
67 4 0.06
ACGTcount: A:0.14, C:0.28, G:0.16, T:0.41
Consensus pattern (66 bp):
CTTCTCTCACTGCCACATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTCA
G
Found at i:33497982 original size:66 final size:66
Alignment explanation
Indices: 33497857--33497982 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
33497847 CTTACTGCCG
33497857 CATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
1 CATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
33497922 A
66 A
* * *
33497923 CATCTGCTTTTAGTTG-TAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCG
1 CATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCG
33497983 ATGTTGCCTC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 1 0.02
66 50 0.91
67 4 0.07
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.41
Consensus pattern (66 bp):
CATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
A
Found at i:33497998 original size:66 final size:66
Alignment explanation
Indices: 33497857--33498005 Score: 185
Period size: 66 Copynumber: 2.3 Consensus size: 66
33497847 CTTACTGCCG
* * *
33497857 CATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGC
1 CATCCGCTTTAAGTTG-TAGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGC
33497921 TA
65 TA
* * * *
33497923 CATCTGCTTTTAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATGT
1 CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATGC
*
33497987 TG
65 TA
*
33497989 CCTCCGCTTTAAGTTGT
1 CATCCGCTTTAAGTTGT
33498006 GTAATTTGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
65 1 0.01
66 67 0.93
67 4 0.06
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.42
Consensus pattern (66 bp):
CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGCT
A
Found at i:33498689 original size:74 final size:74
Alignment explanation
Indices: 33498601--33498749 Score: 280
Period size: 74 Copynumber: 2.0 Consensus size: 74
33498591 CTGCCAATAT
* *
33498601 TAAAAAATTGAAAATACCTCTGCATGAGCTACACACGTAAAACTTTTCGACCCAGCTGTGTGAGT
1 TAAAAAATTAAAAATACCTCTGCATGAGCTACACACGCAAAACTTTTCGACCCAGCTGTGTGAGT
33498666 GAATTTTTG
66 GAATTTTTG
33498675 TAAAAAATTAAAAATACCTCTGCATGAGCTACACACGCAAAACTTTTCGACCCAGCTGTGTGAGT
1 TAAAAAATTAAAAATACCTCTGCATGAGCTACACACGCAAAACTTTTCGACCCAGCTGTGTGAGT
33498740 GAATTTTTG
66 GAATTTTTG
33498749 T
1 T
33498750 TGCTGCCTAC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (74 bp):
TAAAAAATTAAAAATACCTCTGCATGAGCTACACACGCAAAACTTTTCGACCCAGCTGTGTGAGT
GAATTTTTG
Found at i:33503602 original size:9 final size:9
Alignment explanation
Indices: 33503588--33503699 Score: 105
Period size: 9 Copynumber: 13.3 Consensus size: 9
33503578 TAAGGGATAT
33503588 TTATGTAAG
1 TTATGTAAG
33503597 TTATGT-A-
1 TTATGTAAG
* *
33503604 TTAAGTAAA
1 TTATGTAAG
33503613 TTATGTAAG
1 TTATGTAAG
33503622 TTATGT-A-
1 TTATGTAAG
*
33503629 TTATCTAAG
1 TTATGTAAG
33503638 TTATGTAAG
1 TTATGTAAG
33503647 TTATGT-A-
1 TTATGTAAG
* *
33503654 TTAAGTAGG
1 TTATGTAAG
*
33503663 TTATGTAAT
1 TTATGTAAG
*
33503672 TTATGT--C
1 TTATGTAAG
33503679 TTATGTAAG
1 TTATGTAAG
33503688 TTATGTAAG
1 TTATGTAAG
33503697 TTA
1 TTA
33503700 CTATTTAGGT
Statistics
Matches: 83, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
7 21 0.25
8 5 0.06
9 57 0.69
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:33503616 original size:25 final size:25
Alignment explanation
Indices: 33503588--33503699 Score: 161
Period size: 25 Copynumber: 4.5 Consensus size: 25
33503578 TAAGGGATAT
*
33503588 TTATGTAAGTTATGTATTAAGTAAA
1 TTATGTAAGTTATGTATTAAGTAAG
**
33503613 TTATGTAAGTTATGTATTATCTAAG
1 TTATGTAAGTTATGTATTAAGTAAG
*
33503638 TTATGTAAGTTATGTATTAAGTAGG
1 TTATGTAAGTTATGTATTAAGTAAG
* * *
33503663 TTATGTAATTTATGTCTTATGTAAG
1 TTATGTAAGTTATGTATTAAGTAAG
33503688 TTATGTAAGTTA
1 TTATGTAAGTTA
33503700 CTATTTAGGT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTAAGTAAG
Found at i:33503631 original size:16 final size:16
Alignment explanation
Indices: 33503612--33503694 Score: 80
Period size: 16 Copynumber: 5.1 Consensus size: 16
33503602 TATTAAGTAA
33503612 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
33503628 ATTATCTAAGTTATGT
1 ATTATGTAAGTTATGT
*
33503644 AAGTTATGT-A-TTAAGT
1 -A-TTATGTAAGTTATGT
*
33503660 AGGTTATGTAATTTATGT
1 A--TTATGTAAGTTATGT
*
33503678 CTTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
33503694 A
1 A
33503695 AGTTACTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
15 1 0.02
16 41 0.75
17 3 0.05
18 10 0.18
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.48
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:33503643 original size:50 final size:50
Alignment explanation
Indices: 33503588--33503699 Score: 179
Period size: 50 Copynumber: 2.2 Consensus size: 50
33503578 TAAGGGATAT
33503588 TTATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTATTATCTAAG
1 TTATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTATTATCTAAG
** * * *
33503638 TTATGTAAGTTATGTATTAAGTAGGTTATGTAATTTATGTCTTATGTAAG
1 TTATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTATTATCTAAG
33503688 TTATGTAAGTTA
1 TTATGTAAGTTA
33503700 CTATTTAGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (50 bp):
TTATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTATTATCTAAG
Found at i:33503728 original size:34 final size:34
Alignment explanation
Indices: 33503688--33503752 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
33503678 CTTATGTAAG
33503688 TTATGTAAGTTACTATTTAGGTTATTATGTATTA
1 TTATGTAAGTTACTATTTAGGTTATTATGTATTA
33503722 TTATGTAAGTTACTATTTAGGTTATTATGTA
1 TTATGTAAGTTACTATTTAGGTTATTATGTA
33503753 AGTCATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.52
Consensus pattern (34 bp):
TTATGTAAGTTACTATTTAGGTTATTATGTATTA
Found at i:33503760 original size:12 final size:12
Alignment explanation
Indices: 33503588--33503781 Score: 87
Period size: 12 Copynumber: 15.9 Consensus size: 12
33503578 TAAGGGATAT
33503588 TTATGTAAGTTA
1 TTATGTAAGTTA
*
33503600 TGTAT-TAAGTAAA
1 T-TATGTAAGT-TA
33503613 TTATGTAAGTTA
1 TTATGTAAGTTA
** *
33503625 TGTAT-TATCTAA
1 T-TATGTAAGTTA
33503637 GTTATGTAAGTTA
1 -TTATGTAAGTTA
33503650 TGTAT-TAAG-TA
1 T-TATGTAAGTTA
*
33503661 GGTTATGTAATTTA
1 --TTATGTAAGTTA
* * *
33503675 TGTCT-TATGTAA
1 T-TATGTAAGTTA
33503687 GTTATGTAAGTTA
1 -TTATGTAAGTTA
* * *
33503700 CTATTTAGGTTA
1 TTATGTAAGTTA
33503712 TTATGT-A-TTA
1 TTATGTAAGTTA
33503722 TTATGTAAGTTA
1 TTATGTAAGTTA
* * *
33503734 CTATTTAGGTTA
1 TTATGTAAGTTA
*
33503746 TTATGTAAGTCA
1 TTATGTAAGTTA
* * *
33503758 TTATATATGTTGG
1 TTATGTAAGTT-A
33503771 TTATGTAAGTT
1 TTATGTAAGTT
33503782 GTGATATGAT
Statistics
Matches: 130, Mismatches: 35, Indels: 33
0.66 0.18 0.17
Matches are distributed among these distances:
10 9 0.07
11 3 0.02
12 74 0.57
13 42 0.32
14 2 0.02
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.49
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:33503983 original size:29 final size:29
Alignment explanation
Indices: 33503950--33504024 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
33503940 ACGTAGGCTA
33503950 TGTATTATGCAAGTTATTTATGTAAGTGG
1 TGTATTATGCAAGTTATTTATGTAAGTGG
33503979 TGTATTATGCAAGTTATTTATGTAAGTGG
1 TGTATTATGCAAGTTATTTATGTAAGTGG
*
33504008 TGTATTATGTAAGTTAT
1 TGTATTATGCAAGTTAT
33504025 GTACGCTATG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (29 bp):
TGTATTATGCAAGTTATTTATGTAAGTGG
Found at i:33504027 original size:16 final size:16
Alignment explanation
Indices: 33503916--33504027 Score: 74
Period size: 16 Copynumber: 7.2 Consensus size: 16
33503906 ACGTAAGTGG
33503916 TGTATTATGTAAGTTA
1 TGTATTATGTAAGTTA
* * * *
33503932 AGTAAGTTACGTAGGCTA
1 TGT-A-TTATGTAAGTTA
*
33503950 TGTATTATGCAAGTTA
1 TGTATTATGTAAGTTA
**
33503966 --T-TTATGTAAGTGG
1 TGTATTATGTAAGTTA
*
33503979 TGTATTATGCAAGTTA
1 TGTATTATGTAAGTTA
**
33503995 --T-TTATGTAAGTGG
1 TGTATTATGTAAGTTA
33504008 TGTATTATGTAAGTTA
1 TGTATTATGTAAGTTA
33504024 TGTA
1 TGTA
33504028 CGCTATGTAT
Statistics
Matches: 68, Mismatches: 20, Indels: 16
0.65 0.19 0.15
Matches are distributed among these distances:
13 18 0.26
14 2 0.03
15 2 0.03
16 33 0.49
17 2 0.03
18 11 0.16
ACGTcount: A:0.29, C:0.04, G:0.23, T:0.44
Consensus pattern (16 bp):
TGTATTATGTAAGTTA
Found at i:33504813 original size:19 final size:18
Alignment explanation
Indices: 33504789--33504827 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
33504779 ATGTTATTCG
33504789 AATTTTAAATATATATATA
1 AATTTTAAATATATAT-TA
33504808 AATTTTAAATATATATTA
1 AATTTTAAATATATATTA
33504826 AA
1 AA
33504828 AAATTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AATTTTAAATATATATTA
Found at i:33505487 original size:28 final size:29
Alignment explanation
Indices: 33505441--33505501 Score: 106
Period size: 28 Copynumber: 2.1 Consensus size: 29
33505431 GCAAATAAAT
33505441 CCTCACCGACAAAAAATTAAAAATTGAAA
1 CCTCACCGACAAAAAATTAAAAATTGAAA
*
33505470 CCTCACCGA-AAAACATTAAAAATTGAAA
1 CCTCACCGACAAAAAATTAAAAATTGAAA
33505498 CCTC
1 CCTC
33505502 TGTGAATAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.51, C:0.25, G:0.07, T:0.18
Consensus pattern (29 bp):
CCTCACCGACAAAAAATTAAAAATTGAAA
Found at i:33506336 original size:47 final size:49
Alignment explanation
Indices: 33506256--33506348 Score: 147
Period size: 47 Copynumber: 1.9 Consensus size: 49
33506246 TTTTGCTAAG
33506256 TAATATTTATAATATATAGTAGTAAAATTATAAATTTTAGTGTTTTAAC
1 TAATATTTATAATATATAGTAGTAAAATTATAAATTTTAGTGTTTTAAC
*
33506305 TAATATTTATAA-AT-T-TTAGATAAAATTATAAATTTTAGTGTTTT
1 TAATATTTATAATATATAGTAG-TAAAATTATAAATTTTAGTGTTTT
33506349 TATTTTTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
46 3 0.07
47 25 0.60
48 2 0.05
49 12 0.29
ACGTcount: A:0.42, C:0.01, G:0.08, T:0.49
Consensus pattern (49 bp):
TAATATTTATAATATATAGTAGTAAAATTATAAATTTTAGTGTTTTAAC
Found at i:33506913 original size:19 final size:19
Alignment explanation
Indices: 33506869--33506915 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
33506859 TTAGAAAAAT
* *
33506869 TTTTA-TTTCATTTTTTTA
1 TTTTATTTTTATTTTTGTA
**
33506887 TTCCATTTTTATTTTTGTA
1 TTTTATTTTTATTTTTGTA
33506906 TTTTATTTTT
1 TTTTATTTTT
33506916 TCTTATAATT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTATTTTTATTTTTGTA
Found at i:33507289 original size:23 final size:23
Alignment explanation
Indices: 33507255--33507308 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
33507245 ACCCTTGAAA
* * *
33507255 CCCTAAA-TCCCTAGCTCTTAAC
1 CCCTAAACCCCCTAACTCCTAAC
33507277 CCCTAAACCCCCTAACTCCTAAC
1 CCCTAAACCCCCTAACTCCTAAC
33507300 CCCTAAACC
1 CCCTAAACC
33507309 TTAAACCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.30, C:0.48, G:0.02, T:0.20
Consensus pattern (23 bp):
CCCTAAACCCCCTAACTCCTAAC
Found at i:33507589 original size:29 final size:29
Alignment explanation
Indices: 33507556--33507631 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 29
33507546 ACCCATGAAA
*
33507556 CCCTAAA-CTATAAATCCT-TAGCTCTTAAC
1 CCCTAAACCT-TAAATCCTCTAGC-CCTAAC
*
33507585 CCCTAAACCCCTAAA-CCTCTAGCCCTAAC
1 CCCTAAA-CCTTAAATCCTCTAGCCCTAAC
33507614 CCCTAAACCTTAAATCCT
1 CCCTAAACCTTAAATCCT
33507632 AACCCGACCT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 6 0.15
29 25 0.62
30 8 0.20
31 1 0.03
ACGTcount: A:0.33, C:0.39, G:0.03, T:0.25
Consensus pattern (29 bp):
CCCTAAACCTTAAATCCTCTAGCCCTAAC
Found at i:33507632 original size:21 final size:21
Alignment explanation
Indices: 33507590--33507662 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
33507580 TTAACCCCTA
**
33507590 AACCCCTAAACCTCT-AGCCCT
1 AACCCCTAAACCT-TAAATCCT
33507611 AACCCCTAAACCTTAAATCCT
1 AACCCCTAAACCTTAAATCCT
*
33507632 AA-CCC--GACCTTAAATCCCT
1 AACCCCTAAACCTTAAAT-CCT
*
33507651 AATCCCTAAACC
1 AACCCCTAAACC
33507663 CCAACCCAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
18 9 0.21
19 5 0.12
20 7 0.16
21 19 0.44
22 3 0.07
ACGTcount: A:0.34, C:0.42, G:0.03, T:0.21
Consensus pattern (21 bp):
AACCCCTAAACCTTAAATCCT
Found at i:33507781 original size:15 final size:16
Alignment explanation
Indices: 33507755--33507788 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
33507745 ATATACCTCT
33507755 AACCCTTAAATCCATA
1 AACCCTTAAATCCATA
33507771 AACCC-TAAATCCATA
1 AACCCTTAAATCCATA
33507786 AAC
1 AAC
33507789 ACCATATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (16 bp):
AACCCTTAAATCCATA
Found at i:33508147 original size:41 final size:42
Alignment explanation
Indices: 33508076--33508270 Score: 161
Period size: 41 Copynumber: 4.8 Consensus size: 42
33508066 TAAAAAAAAT
* * * * **
33508076 ATTAGCGGCG-TTTTTGAAAAAGCGCCGCTAAAGATCTTAGC
1 ATTAGCGGCGCTTCTTCAAAAAGCGCAGCTAAAGACCAGAGC
* *
33508117 ATTAGCGGCGCTTCTTCAAAAA-TGCAGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTCTTCAAAAAGCGCAGCTAAAGACCAGAGC
* *
33508158 ATTACCGGCGCTTCTTCAAAAA-CGTC-GCTAAAGGA-TAGAGC
1 ATTAGCGGCGCTTCTTCAAAAAGCG-CAGCTAAA-GACCAGAGC
* * ** * *
33508199 ATTAGCGGCG-TTTTTGAGTAAGCGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTCTTCAAAAAGCGCAGCTAAAGACCAGAGC
* *
33508240 ATTAGCGGCGCTTCTT-AAAAAACGCCGCTAA
1 ATTAGCGGCGCTTCTTCAAAAAGCGCAGCTAA
33508271 GGGCCCCAAA
Statistics
Matches: 124, Mismatches: 23, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
40 9 0.07
41 100 0.81
42 15 0.12
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (42 bp):
ATTAGCGGCGCTTCTTCAAAAAGCGCAGCTAAAGACCAGAGC
Found at i:33508378 original size:39 final size:40
Alignment explanation
Indices: 33508312--33508463 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
33508302 TGGCTTAGGC
*
33508312 TTTTT-GCGGCGATTTTCAG-AAAACGCCGCTAATGCT-AA
1 TTTTTAGCGGCG-TTTTCTGTAAAACGCCGCTAATGCTCAA
* *
33508350 TTTTTAGCGGCGTTTTCTGTAAAGCGCCGCTAATGCTCTA
1 TTTTTAGCGGCGTTTTCTGTAAAACGCCGCTAATGCTCAA
** * * *
33508390 CCTTTAGCGGCGTTTT-TATAAAATTGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTCTGTAAAA-CGCCGCTAATGCTCAA
* * * * *
33508430 TTTATAGTGGCGTTTTTTGTCCAAACACCGCTAA
1 TTTTTAGCGGCGTTTTCTGT-AAAACGCCGCTAA
33508464 AAATACCACT
Statistics
Matches: 91, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
38 11 0.12
39 27 0.30
40 41 0.45
41 9 0.10
42 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCTGTAAAACGCCGCTAATGCTCAA
Found at i:33510552 original size:19 final size:20
Alignment explanation
Indices: 33510528--33510565 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33510518 ATAGTAAGAA
33510528 GTTAAATA-TCACTTTTTAT
1 GTTAAATATTCACTTTTTAT
*
33510547 GTTAAATATTTACTTTTTA
1 GTTAAATATTCACTTTTTA
33510566 AATAAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (20 bp):
GTTAAATATTCACTTTTTAT
Found at i:33512173 original size:14 final size:14
Alignment explanation
Indices: 33512154--33512289 Score: 53
Period size: 15 Copynumber: 9.4 Consensus size: 14
33512144 ATCTAAACTT
33512154 TAAACCCTTAACCC
1 TAAACCCTTAACCC
*
33512168 TAAACCCCTAACCTC
1 TAAACCCTTAACC-C
*
33512183 TAAA-ACTTGAACCC
1 TAAACCCTT-AACCC
* *
33512197 -CAACCCTTAAACCG
1 TAAACCCTT-AACCC
* * *
33512211 TAAACCATAAACCA
1 TAAACCCTTAACCC
* * *
33512225 TAAATCATAAACCC
1 TAAACCCTTAACCC
*
33512239 TAAA-CCTATAATCCT
1 TAAACCCT-TAA-CCC
* *
33512254 TAAACCCATAATCCA
1 TAAACCCTTAA-CCC
* *
33512269 TAAACCCATAATCCA
1 TAAACCCTTAA-CCC
33512284 TAAACC
1 TAAACC
33512290 TTGAAATAGT
Statistics
Matches: 97, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
13 4 0.04
14 44 0.45
15 47 0.48
16 2 0.02
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.21
Consensus pattern (14 bp):
TAAACCCTTAACCC
Found at i:33512180 original size:21 final size:20
Alignment explanation
Indices: 33512156--33512216 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 20
33512146 CTAAACTTTA
33512156 AACCCTTAACCCTAAACCCC
1 AACCCTTAACCCTAAACCCC
* * * *
33512176 TAACCTCTAAAACTTGAACCCC
1 -AACC-CTTAACCCTAAACCCC
*
33512198 AACCCTTAAACCGTAAACC
1 AACCCTT-AACCCTAAACC
33512217 ATAAACCATA
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
20 2 0.07
21 16 0.53
22 12 0.40
ACGTcount: A:0.38, C:0.41, G:0.03, T:0.18
Consensus pattern (20 bp):
AACCCTTAACCCTAAACCCC
Found at i:33512216 original size:7 final size:7
Alignment explanation
Indices: 33512204--33512289 Score: 82
Period size: 7 Copynumber: 11.9 Consensus size: 7
33512194 CCCCAACCCT
*
33512204 TAAACCG
1 TAAACCA
33512211 TAAACCA
1 TAAACCA
33512218 TAAACCA
1 TAAACCA
*
33512225 TAAATCA
1 TAAACCA
*
33512232 TAAACCC
1 TAAACCA
33512239 TAAACCTA
1 TAAACC-A
* *
33512247 TAATCCT
1 TAAACCA
33512254 TAAACCCA
1 TAAA-CCA
*
33512262 TAATCCA
1 TAAACCA
33512269 TAAACCCA
1 TAAA-CCA
*
33512277 TAATCCA
1 TAAACCA
33512284 TAAACC
1 TAAACC
33512290 TTGAAATAGT
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
7 47 0.75
8 16 0.25
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:33512257 original size:15 final size:15
Alignment explanation
Indices: 33512211--33512289 Score: 90
Period size: 15 Copynumber: 5.4 Consensus size: 15
33512201 CCTTAAACCG
*
33512211 TAAA-CCATAAACCA
1 TAAACCCATAATCCA
* * *
33512225 TAAA-TCATAAACCC
1 TAAACCCATAATCCA
* *
33512239 TAAACCTATAATCCT
1 TAAACCCATAATCCA
33512254 TAAACCCATAATCCA
1 TAAACCCATAATCCA
33512269 TAAACCCATAATCCA
1 TAAACCCATAATCCA
33512284 TAAACC
1 TAAACC
33512290 TTGAAATAGT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 16 0.29
15 40 0.71
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:33512273 original size:30 final size:30
Alignment explanation
Indices: 33512198--33512289 Score: 98
Period size: 30 Copynumber: 3.1 Consensus size: 30
33512188 CTTGAACCCC
* * *
33512198 AACCCTTAAACCGTAAA-CCATAAACCATA
1 AACCCATAAACCATAAACCCATAATCCATA
* * * *
33512227 AA-TCATAAACCCTAAACCTATAATCCTTA
1 AACCCATAAACCATAAACCCATAATCCATA
*
33512256 AACCCATAATCCATAAACCCATAATCCATA
1 AACCCATAAACCATAAACCCATAATCCATA
33512286 AACC
1 AACC
33512290 TTGAAATAGT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
28 11 0.22
29 13 0.26
30 26 0.52
ACGTcount: A:0.47, C:0.32, G:0.01, T:0.21
Consensus pattern (30 bp):
AACCCATAAACCATAAACCCATAATCCATA
Found at i:33512505 original size:22 final size:22
Alignment explanation
Indices: 33512462--33512544 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 22
33512452 CCCTAATTCG
* **
33512462 ACCCTTAAATCCCTAAATCCTAA
1 ACCCTTAACT-CCTAACCCCTAA
*
33512485 ATCCC-TAACTCTTAACCCCTAA
1 A-CCCTTAACTCCTAACCCCTAA
*
33512507 ACCCTTAACTCCTAACCCTTAA
1 ACCCTTAACTCCTAACCCCTAA
* *
33512529 A-CCTTAAATCCCAACC
1 ACCCTTAACTCCTAACC
33512545 ATTAAACCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
21 16 0.32
22 26 0.52
23 5 0.10
24 3 0.06
ACGTcount: A:0.35, C:0.40, G:0.00, T:0.25
Consensus pattern (22 bp):
ACCCTTAACTCCTAACCCCTAA
Found at i:33512515 original size:15 final size:14
Alignment explanation
Indices: 33512487--33512528 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
33512477 AATCCTAAAT
*
33512487 CCCTAACTCTTAAC
1 CCCTAACCCTTAAC
33512501 CCCTAAACCCTTAAC
1 CCCT-AACCCTTAAC
*
33512516 TCCTAACCCTTAA
1 CCCTAACCCTTAA
33512529 ACCTTAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.31, C:0.43, G:0.00, T:0.26
Consensus pattern (14 bp):
CCCTAACCCTTAAC
Found at i:33512549 original size:21 final size:21
Alignment explanation
Indices: 33512504--33512560 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
33512494 TCTTAACCCC
* * *
33512504 TAAACCCTTAACTCCTAACCCT
1 TAAA-CCTTAAATCCCAACCAT
33512526 TAAACCTTAAATCCCAACCAT
1 TAAACCTTAAATCCCAACCAT
*
33512547 TAAACCAT-AATCCC
1 TAAACCTTAAATCCC
33512561 TAATCCATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.19
21 21 0.68
22 4 0.13
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAACCTTAAATCCCAACCAT
Found at i:33512973 original size:41 final size:41
Alignment explanation
Indices: 33512928--33513042 Score: 158
Period size: 41 Copynumber: 2.8 Consensus size: 41
33512918 TAAAATATTT
*
33512928 TTAGCGGCGCTTTTTCAAAAATACCGCTAAAGCACCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACACCGCTAAAGCACCGAGCA
* * * *
33512969 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCCCCTAGCA
1 TTAGCGGCGCTTTTTCAAAAACACCGCTAAAGCACCGAGCA
* *
33513010 TTAGCGACGCTTTCTCAAAAAACACCGCTAAAG
1 TTAGCGGCGCTTTTTC-AAAAACACCGCTAAAG
33513043 AACGAAAAGA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
41 50 0.78
42 14 0.22
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACACCGCTAAAGCACCGAGCA
Found at i:33516871 original size:27 final size:27
Alignment explanation
Indices: 33516840--33517016 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
33516830 ATTGAGTCCT
* * * *
33516840 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
33516867 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
33516894 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
33516922 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
33516949 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
33516976 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
33517003 GCACACTTAGTGCT
1 GCACACTTAGTGCT
33517017 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:33516978 original size:82 final size:81
Alignment explanation
Indices: 33516860--33517015 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33516850 TGCTATATAA
* *
33516860 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33516925 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33516942 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33517006 CACTTAGTGC
65 CACTTAGTGC
33517016 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33517399 original size:86 final size:86
Alignment explanation
Indices: 33517254--33517427 Score: 348
Period size: 86 Copynumber: 2.0 Consensus size: 86
33517244 AATGACTTAC
33517254 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
1 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
33517319 TAGTTCCCTTTTGCTCTTGAG
66 TAGTTCCCTTTTGCTCTTGAG
33517340 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
1 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
33517405 TAGTTCCCTTTTGCTCTTGAG
66 TAGTTCCCTTTTGCTCTTGAG
33517426 CT
1 CT
33517428 CAATCTAGTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.41
Consensus pattern (86 bp):
CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
TAGTTCCCTTTTGCTCTTGAG
Found at i:33523654 original size:27 final size:27
Alignment explanation
Indices: 33523624--33523801 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33523614 ATATTGAGTC
* * * *
33523624 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
33523651 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33523678 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
33523706 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33523733 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
33523760 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33523787 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33523802 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33523763 original size:82 final size:81
Alignment explanation
Indices: 33523645--33523800 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33523635 TGCTATATAA
* *
33523645 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33523710 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33523727 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33523791 CACTTAGTGC
65 CACTTAGTGC
33523801 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33524184 original size:86 final size:86
Alignment explanation
Indices: 33524039--33524212 Score: 348
Period size: 86 Copynumber: 2.0 Consensus size: 86
33524029 AATGACTTAC
33524039 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
1 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
33524104 TAGTTCCCTTTTGCTCTTGAG
66 TAGTTCCCTTTTGCTCTTGAG
33524125 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
1 CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
33524190 TAGTTCCCTTTTGCTCTTGAG
66 TAGTTCCCTTTTGCTCTTGAG
33524211 CT
1 CT
33524213 CAATCTAGTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.41
Consensus pattern (86 bp):
CTTGTGTTGGGTAAGACGGTTCCAACTCGGCTACTCAGTGATCTTTTCTTTGCCTTTATCGGATC
TAGTTCCCTTTTGCTCTTGAG
Found at i:33526321 original size:27 final size:27
Alignment explanation
Indices: 33526283--33526531 Score: 284
Period size: 27 Copynumber: 9.2 Consensus size: 27
33526273 ATTCGGGGGC
33526283 AAATGACTGAAATACCCTCGATGGGTA
1 AAATGACTGAAATACCCTCGATGGGTA
* * *
33526310 AAATGACTGAAATACCTTCGATCGATA
1 AAATGACTGAAATACCCTCGATGGGTA
* * *
33526337 AAATTACCGAAATACCCTCTATGGGTA
1 AAATGACTGAAATACCCTCGATGGGTA
* * *
33526364 AAATTACTGAAATAACCTTGATGGGTA
1 AAATGACTGAAATACCCTCGATGGGTA
* *
33526391 AAATGACTGAAATACCTTCGATGGATA
1 AAATGACTGAAATACCCTCGATGGGTA
** ** * *
33526418 AAAAAACCAAAATACCATTGATGGGTA
1 AAATGACTGAAATACCCTCGATGGGTA
* ** *
33526445 AAATAACCCAAATACCCTCGATAGGTA
1 AAATGACTGAAATACCCTCGATGGGTA
33526472 AAATGA-TCGAAATACCCTCGATGGGTA
1 AAATGACT-GAAATACCCTCGATGGGTA
*
33526499 AAATGACTGAAATACCCTCTATGGGTA
1 AAATGACTGAAATACCCTCGATGGGTA
33526526 AAATGA
1 AAATGA
33526532 TTGTTATACC
Statistics
Matches: 185, Mismatches: 35, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
27 184 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGATGGGTA
Found at i:33526542 original size:81 final size:81
Alignment explanation
Indices: 33526283--33526529 Score: 318
Period size: 81 Copynumber: 3.0 Consensus size: 81
33526273 ATTCGGGGGC
* * *
33526283 AAATGACTGAAATACCCTCGATGGGTAAAATGACTGAAATACCTTCGATCGATAAAATTACCGAA
1 AAATAACTGAAATACCCTCGATGGGTAAAATGACTGAAATACCTTCGATGGATAAAATAACCGAA
33526348 ATACCCTCTATGGGTA
66 ATACCCTCTATGGGTA
* * * * *
33526364 AAATTACTGAAATAACCTTGATGGGTAAAATGACTGAAATACCTTCGATGGATAAAAAAACCAAA
1 AAATAACTGAAATACCCTCGATGGGTAAAATGACTGAAATACCTTCGATGGATAAAATAACCGAA
*
33526429 ATACCAT-TGATGGGTA
66 ATACCCTCT-ATGGGTA
** * * * * *
33526445 AAATAACCCAAATACCCTCGATAGGTAAAATGA-TCGAAATACCCTCGATGGGTAAAATGACTGA
1 AAATAACTGAAATACCCTCGATGGGTAAAATGACT-GAAATACCTTCGATGGATAAAATAACCGA
33526509 AATACCCTCTATGGGTA
65 AATACCCTCTATGGGTA
33526526 AAAT
1 AAAT
33526530 GATTGTTATA
Statistics
Matches: 142, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.01
81 139 0.98
82 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (81 bp):
AAATAACTGAAATACCCTCGATGGGTAAAATGACTGAAATACCTTCGATGGATAAAATAACCGAA
ATACCCTCTATGGGTA
Done.