Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 121 of 218
Found at i:36353485 original size:27 final size:27
Alignment explanation
Indices: 36353453--36353902 Score: 241
Period size: 27 Copynumber: 17.3 Consensus size: 27
36353443 AATTGTGGGC
* *
36353453 AAATGACTGAAATACCCTCGATGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
*
36353480 AAATGA-TCGAATTACCCCCGAAGGGTA
1 AAATGACT-GAATTACCCTCGAAGGGTA
*
36353507 AAATGACTGAATTACCCTTGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
** * * *
36353534 AAATGACCAAATTACCCCCAAAAGGT-
1 AAATGACTGAATTACCCTCGAAGGGTA
* * *
36353560 -CAT---T-TATTACCC-CTAAAGGGTA
1 AAATGACTGAATTACCCTC-GAAGGGTA
* * *
36353582 AAATGACCGAATTA-CCTCTGAAGAGAA
1 AAATGACTGAATTACCCTC-GAAGGGTA
36353609 AAATGACTGAATTACCCTCGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
*
36353636 AAATGACTGAATTACCCCCGAAGGGT-
1 AAATGACTGAATTACCCTCGAAGGGTA
* *
36353662 -CAT---TGAATTACCCCCGAAGGGT-
1 AAATGACTGAATTACCCTCGAAGGGTA
* * * *
36353684 -CAT---T-TATTAGCCTTGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
* * * *
36353706 AAAT-AATCGAATTACCCCCAAAGGGTG
1 AAATGACT-GAATTACCCTCGAAGGGTA
*
36353733 AAATGACCGAATTA-CCTCCGAAGGGTA
1 AAATGACTGAATTACCCT-CGAAGGGTA
* **
36353760 AAATAACT-AAGTTACCCTTAAAGGGTA
1 AAATGACTGAA-TTACCCTCGAAGGGTA
* * * *
36353787 ATATGACCGAATTACCCTCAAAAGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
*
36353814 AAATGA-TCGAATTACCCTCGAAAGGTA
1 AAATGACT-GAATTACCCTCGAAGGGTA
* ** * * *
36353841 AAATAACCAAAATACCTTC-AAAGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
* * * *
36353867 AAATTACCGAAATACCC-CCATAGGGTA
1 AAATGACTGAATTACCCTCGA-AGGGTA
36353894 AAATGACTG
1 AAATGACTG
36353903 TTATACCCCT
Statistics
Matches: 332, Mismatches: 65, Indels: 52
0.74 0.14 0.12
Matches are distributed among these distances:
20 1 0.00
21 26 0.08
22 23 0.07
23 4 0.01
25 6 0.02
26 29 0.09
27 232 0.70
28 11 0.03
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.22
Consensus pattern (27 bp):
AAATGACTGAATTACCCTCGAAGGGTA
Found at i:36353516 original size:54 final size:54
Alignment explanation
Indices: 36353453--36353844 Score: 277
Period size: 54 Copynumber: 7.6 Consensus size: 54
36353443 AATTGTGGGC
* * *
36353453 AAATGACTGAAATACCCTCGATGGGTAAAATGATCGAATTACCCCCGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
* * * *
36353507 AAATGACTGAATTACCCTTGAAGGGTAAAATGACCAAATTACCCCCAAAAGGT-
1 AAATGACTGAATTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
* * * * * * *
36353560 -CAT---T-TATTACCC-CTAAAGGGTAAAATGACCGAATTACCTCTGAAGAGAA
1 AAATGACTGAATTACCCTC-GAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
*
36353609 AAATGACTGAATTACCCTCGAAGGGTAAAATGACTGAATTACCCCCGAAGGGT-
1 AAATGACTGAATTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
* * * ** * **
36353662 -CAT---TGAATTACCCCCGAAGGGT--CAT----TTATTAGCCTTGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
* * * * *
36353706 AAAT-AATCGAATTACCCCCAAAGGGTGAAATGACCGAATTACCTCCGAAGGGTA
1 AAATGACT-GAATTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
* ** * * * *
36353760 AAATAACT-AAGTTACCCTTAAAGGGTAATATGACCGAATTACCCTCAAAAGGTA
1 AAATGACTGAA-TTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
*
36353814 AAATGA-TCGAATTACCCTCGAAAGGTAAAAT
1 AAATGACT-GAATTACCCTCGAAGGGTAAAAT
36353845 AACCAAAATA
Statistics
Matches: 258, Mismatches: 57, Indels: 46
0.71 0.16 0.13
Matches are distributed among these distances:
43 13 0.05
45 2 0.01
47 3 0.01
48 50 0.19
49 19 0.07
50 4 0.02
52 4 0.02
53 4 0.02
54 154 0.60
55 5 0.02
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (54 bp):
AAATGACTGAATTACCCTCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTA
Found at i:36353641 original size:102 final size:103
Alignment explanation
Indices: 36353475--36353675 Score: 296
Period size: 102 Copynumber: 2.0 Consensus size: 103
36353465 TACCCTCGAT
* * * *
36353475 GGGTAAAATGATCGAATTACCCCCGAAGGGTAAAATGACTGAATTACCCTTGAAGGGTAAAATGA
1 GGGTAAAATGACCGAATTACCCCCGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
*
36353540 CCAAATTACCCCCAAAAGGTCATT-TATTACCCCTAAA
66 CCAAATTACCCCCAAAAGGTCATTGAATTACCCCTAAA
* *
36353577 GGGTAAAATGACCGAATTACCTCTGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAATTACCCCCGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
** * *
36353642 CTGAATTACCCCCGAAGGGTCATTGAATTACCCC
66 CCAAATTACCCCCAAAAGGTCATTGAATTACCCC
36353676 CGAAGGGTCA
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 79 0.91
103 8 0.09
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (103 bp):
GGGTAAAATGACCGAATTACCCCCGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
CCAAATTACCCCCAAAAGGTCATTGAATTACCCCTAAA
Found at i:36353692 original size:21 final size:22
Alignment explanation
Indices: 36353643--36353687 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
36353633 GTAAAATGAC
36353643 TGAATTACCCCCGAAGGGTCAT
1 TGAATTACCCCCGAAGGGTCAT
36353665 TGAATTACCCCCGAAGGGTCAT
1 TGAATTACCCCCGAAGGGTCAT
36353687 T
1 T
36353688 TATTAGCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (22 bp):
TGAATTACCCCCGAAGGGTCAT
Found at i:36353802 original size:81 final size:80
Alignment explanation
Indices: 36353565--36353900 Score: 275
Period size: 81 Copynumber: 4.3 Consensus size: 80
36353555 AAGGTCATTT
* * * * * **
36353565 ATTACCCCTAAAGGGTAAAATGACCGAATTACCTCTGAAGAGAAAAATGACTGAATTACCCTCGA
1 ATTACCCCCAAAGGGTAAAATGACCGAATTACCTCCGAAGGGTAAAATAACT-AATTACCCTTAA
*
36353630 AGGGTAAAATGACTGA
65 AGGGTAAAATGACCGA
* * * * * * * *
36353646 ATTACCCCCGAAGGGT--CAT---TGAATTACCCCCGAAGGGT--CAT---TTATTAGCCTTGAA
1 ATTACCCCCAAAGGGTAAAATGACCGAATTACCTCCGAAGGGTAAAATAACTAATTACCCTTAAA
* *
36353701 GGGTAAAATAATCGA
66 GGGTAAAATGACCGA
*
36353716 ATTACCCCCAAAGGGTGAAATGACCGAATTACCTCCGAAGGGTAAAATAACTAAGTTACCCTTAA
1 ATTACCCCCAAAGGGTAAAATGACCGAATTACCTCCGAAGGGTAAAATAACTAA-TTACCCTTAA
*
36353781 AGGGTAATATGACCGA
65 AGGGTAAAATGACCGA
* * * * * *
36353797 ATTACCCTCAAAAGGTAAAATGATCGAATTACC-CTCGAAAGGTAAAATAACCAAAATA-CCTTC
1 ATTACCCCCAAAGGGTAAAATGACCGAATTACCTC-CGAAGGGTAAAATAA-CTAATTACCCTT-
*
36353860 AAA-GGTAAAATTACCGA
63 AAAGGGTAAAATGACCGA
* *
36353877 AATACCCCCATAGGGTAAAATGAC
1 ATTACCCCCAAAGGGTAAAATGAC
36353901 TGTTATACCC
Statistics
Matches: 201, Mismatches: 40, Indels: 29
0.74 0.15 0.11
Matches are distributed among these distances:
70 37 0.18
71 1 0.00
72 2 0.01
74 2 0.01
75 17 0.08
76 14 0.07
77 2 0.01
79 2 0.01
80 38 0.19
81 83 0.41
82 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.22
Consensus pattern (80 bp):
ATTACCCCCAAAGGGTAAAATGACCGAATTACCTCCGAAGGGTAAAATAACTAATTACCCTTAAA
GGGTAAAATGACCGA
Found at i:36354083 original size:26 final size:26
Alignment explanation
Indices: 36354054--36354104 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
36354044 GCAAGTATAT
* *
36354054 TGTTACTGGCAGCTTTGCTGCGATAC
1 TGTTACTAGCAGCTTTGCTACGATAC
36354080 TGTTACTAGCAGCTTTGCTACGATA
1 TGTTACTAGCAGCTTTGCTACGATA
36354105 TTGGTGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (26 bp):
TGTTACTAGCAGCTTTGCTACGATAC
Found at i:36354247 original size:28 final size:28
Alignment explanation
Indices: 36354207--36354323 Score: 180
Period size: 28 Copynumber: 4.2 Consensus size: 28
36354197 ATTGCGCTAT
*
36354207 ACTGTTATTGTATTGGGCTAATGCCCAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
36354235 ACTGTTATTGTATTGGGCTAAGGCCCAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
** *
36354263 ACTGTTATTGTATTAAGCTAAGGCCTAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
* *
36354291 ACTGTTACTGTATCGGGCTAAGGCCCAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
36354319 ACTGT
1 ACTGT
36354324 GATGTTACTA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 80 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (28 bp):
ACTGTTATTGTATTGGGCTAAGGCCCAC
Found at i:36361641 original size:12 final size:12
Alignment explanation
Indices: 36361624--36361648 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36361614 GCCAAGGTAG
36361624 ATGTTATTGAGA
1 ATGTTATTGAGA
36361636 ATGTTATTGAGA
1 ATGTTATTGAGA
36361648 A
1 A
36361649 ACTCCCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (12 bp):
ATGTTATTGAGA
Found at i:36367606 original size:27 final size:27
Alignment explanation
Indices: 36367386--36367606 Score: 241
Period size: 27 Copynumber: 8.2 Consensus size: 27
36367376 GGGTATAACA
** *
36367386 GTCATTTTATGCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
36367413 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
36367440 GTCATTTTAACCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
36367467 GTCATTCTACCCTAT-GGAGGTATTTCG
1 GTCATTTTACCCTATAGG-GGTATTTCG
* *
36367494 GTCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCG
36367521 GTCATTTTACCCTAT-GAGGGTA-TTCAG
1 GTCATTTTACCCTATAG-GGGTATTTC-G
* * * * *
36367548 GTCATTTTATCTTATAAGGGCATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
36367575 ATCATTCTACTCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
36367602 GTCAT
1 GTCAT
36367607 AATAGTGTAA
Statistics
Matches: 162, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 6 0.04
27 152 0.94
28 4 0.02
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:36368234 original size:12 final size:12
Alignment explanation
Indices: 36368217--36368259 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
36368207 ATCCCAATAT
36368217 TCTCTCCTCAAA
1 TCTCTCCTCAAA
*
36368229 TCTCTCC-AAATA
1 TCTCTCCTCAA-A
*
36368241 TCCCTCCTCAAA
1 TCTCTCCTCAAA
36368253 TCTCTCC
1 TCTCTCC
36368260 ATGACCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.84
13 2 0.08
ACGTcount: A:0.23, C:0.44, G:0.00, T:0.33
Consensus pattern (12 bp):
TCTCTCCTCAAA
Found at i:36368791 original size:21 final size:22
Alignment explanation
Indices: 36368767--36368811 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
36368757 TATTTAACCC
*
36368767 AAAATAAATTGGATTAT-AATT
1 AAAATAAATTAGATTATGAATT
* *
36368788 AAAATTAATTATATTATGAATT
1 AAAATAAATTAGATTATGAATT
36368810 AA
1 AA
36368812 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAATAAATTAGATTATGAATT
Found at i:36372183 original size:19 final size:19
Alignment explanation
Indices: 36372145--36372183 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36372135 GTATCTTGAC
* *
36372145 AAAAGTGGTAAATCATTAT
1 AAAAGTAGTAAATCACTAT
*
36372164 AAAAGTAGTAAATTACTAT
1 AAAAGTAGTAAATCACTAT
36372183 A
1 A
36372184 TTTATTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (19 bp):
AAAAGTAGTAAATCACTAT
Found at i:36373488 original size:18 final size:18
Alignment explanation
Indices: 36373467--36373504 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36373457 ATTCGGGTAA
36373467 AACCGAAAAAATTCGGTT
1 AACCGAAAAAATTCGGTT
**
36373485 AACCGACCAAATTCGGTT
1 AACCGAAAAAATTCGGTT
36373503 AA
1 AA
36373505 TCGGTCGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (18 bp):
AACCGAAAAAATTCGGTT
Found at i:36373830 original size:9 final size:9
Alignment explanation
Indices: 36373816--36373882 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
36373806 GTAGTGATTC
*
36373816 AATTTGGTT
1 AATTCGGTT
*
36373825 AATTTGGTT
1 AATTCGGTT
*
36373834 AATTCGGGT
1 AATTCGGTT
*
36373843 AATTCAGTT
1 AATTCGGTT
*
36373852 AATTCGGGT
1 AATTCGGTT
36373861 AATTCGGTT
1 AATTCGGTT
36373870 AATTCGGTT
1 AATTCGGTT
36373879 AATT
1 AATT
36373883 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:36379968 original size:19 final size:19
Alignment explanation
Indices: 36379944--36379980 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36379934 CTACAACTCT
36379944 CAATATTTCGTCCTATTCC
1 CAATATTTCGTCCTATTCC
*
36379963 CAATATTTCTTCCTATTC
1 CAATATTTCGTCCTATTC
36379981 TCCATATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.30, G:0.03, T:0.46
Consensus pattern (19 bp):
CAATATTTCGTCCTATTCC
Found at i:36379987 original size:19 final size:19
Alignment explanation
Indices: 36379941--36379987 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
36379931 ACACTACAAC
*
36379941 TCTCAATATTTCGTCCTAT
1 TCTCCATATTTCGTCCTAT
*
36379960 TC-CCAATATTTCTTCCTAT
1 TCTCC-ATATTTCGTCCTAT
36379979 TCTCCATAT
1 TCTCCATAT
36379988 CCATCTGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 1 0.04
19 21 0.88
20 2 0.08
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.47
Consensus pattern (19 bp):
TCTCCATATTTCGTCCTAT
Found at i:36383676 original size:25 final size:25
Alignment explanation
Indices: 36383648--36383707 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
36383638 TCACAACTCG
36383648 TGTGAGCATACTTTTTCGTAGTTCA
1 TGTGAGCATACTTTTTCGTAGTTCA
36383673 TGTGAGCATACTTTTTCGTAGTTCA
1 TGTGAGCATACTTTTTCGTAGTTCA
36383698 TGTGAGCATA
1 TGTGAGCATA
36383708 TATGTACAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (25 bp):
TGTGAGCATACTTTTTCGTAGTTCA
Found at i:36384367 original size:20 final size:20
Alignment explanation
Indices: 36384342--36384379 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36384332 TATAGAACGT
36384342 AAATGC-AATGGAAAGTAATG
1 AAATGCAAAT-GAAAGTAATG
36384362 AAATGCAAATGAAAGTAA
1 AAATGCAAATGAAAGTAA
36384380 AAAAAATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.55, C:0.05, G:0.21, T:0.18
Consensus pattern (20 bp):
AAATGCAAATGAAAGTAATG
Found at i:36402136 original size:39 final size:39
Alignment explanation
Indices: 36402082--36402163 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
36402072 TCTATTACAA
*
36402082 GAGTTAGAAAAATTAATTGGCCAAAGGTTGTCACTGCAT
1 GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
36402121 GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
1 GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
36402160 GAGT
1 GAGT
36402164 GTGTGTCAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.27
Consensus pattern (39 bp):
GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
Found at i:36404293 original size:33 final size:34
Alignment explanation
Indices: 36404256--36404362 Score: 95
Period size: 33 Copynumber: 3.3 Consensus size: 34
36404246 AAGAAAACCA
36404256 AGTATG-TTCATAAGAACTTAGCGAGTTCCAAGG
1 AGTATGATTCATAAGAACTTAGCGAGTTCCAAGG
* ** **
36404289 AGTATGATTC--AACAA--TAG-G-GTCTATAACCA
1 AGTATGATTCATAAGAACTTAGCGAGT-TCCAA-GG
36404319 AGTATG-TTCATAAGAACTTAGCGAGTTCCAAGG
1 AGTATGATTCATAAGAACTTAGCGAGTTCCAAGG
36404352 AGTATGATTCA
1 AGTATGATTCA
36404363 ACAATAGGGT
Statistics
Matches: 54, Mismatches: 10, Indels: 19
0.65 0.12 0.23
Matches are distributed among these distances:
28 2 0.04
29 7 0.13
30 9 0.17
31 4 0.07
32 4 0.07
33 15 0.28
34 11 0.20
35 2 0.04
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (34 bp):
AGTATGATTCATAAGAACTTAGCGAGTTCCAAGG
Found at i:36404329 original size:63 final size:63
Alignment explanation
Indices: 36404251--36404378 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
36404241 AGAAGAAGAA
36404251 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
1 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
36404314 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
1 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
36404377 AA
1 AA
36404379 ACTCTAAATT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (63 bp):
AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
Found at i:36405666 original size:5 final size:5
Alignment explanation
Indices: 36405656--36405682 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
36405646 TGAGCATTCG
36405656 ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA AT
36405683 AAAAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:36413843 original size:29 final size:29
Alignment explanation
Indices: 36413811--36413869 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
36413801 TAATTTTTAA
* *
36413811 ATGTAGTGTTTTTTAAAAATAAAAAATAT
1 ATGTAGAGTATTTTAAAAATAAAAAATAT
*
36413840 ATGTGGAGTATTTTAAAAATAAAAAATAT
1 ATGTAGAGTATTTTAAAAATAAAAAATAT
36413869 A
1 A
36413870 GTTTATATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (29 bp):
ATGTAGAGTATTTTAAAAATAAAAAATAT
Found at i:36413887 original size:9 final size:9
Alignment explanation
Indices: 36413875--36413911 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36413865 ATATAGTTTA
36413875 TATTCGAAT
1 TATTCGAAT
36413884 TATTCGAAT
1 TATTCGAAT
*
36413893 TATTCGAGT
1 TATTCGAAT
*
36413902 TATTTGAAT
1 TATTCGAAT
36413911 T
1 T
36413912 TGAAAATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:36419995 original size:50 final size:50
Alignment explanation
Indices: 36419883--36420129 Score: 223
Period size: 50 Copynumber: 4.8 Consensus size: 50
36419873 ATTTGGGTCA
* *
36419883 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTAAGATTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-TATG
* * * *
36419939 CGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
* ** * *
36419989 AGAGGTCCCCCGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
* * * *
36420039 AGA-ACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAGG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ATATG
* * *
36420088 AAACATCCCATGTAAAACCATGTCTGGGACATGG-ATTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
36420130 TGTTATTATC
Statistics
Matches: 161, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.01
49 37 0.23
50 81 0.50
51 2 0.01
55 1 0.01
56 38 0.24
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
Found at i:36423403 original size:17 final size:17
Alignment explanation
Indices: 36423383--36423419 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
36423373 TTATTCATCA
*
36423383 CATTTAGGTTAATTTTG
1 CATTTAGGATAATTTTG
*
36423400 CATTTAGGATCATTTTG
1 CATTTAGGATAATTTTG
36423417 CAT
1 CAT
36423420 GTAGTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (17 bp):
CATTTAGGATAATTTTG
Found at i:36431936 original size:47 final size:49
Alignment explanation
Indices: 36431828--36431969 Score: 164
Period size: 47 Copynumber: 2.9 Consensus size: 49
36431818 TCGTCCATCC
*
36431828 GAAACACCATTTGTGGCCAAGCCACCACTGATTTGTAGATAAACTGCCACT
1 GAAACA-CA-TTGTGGACAAGCCACCACTGATTTGTAGATAAACTGCCACT
* * * *
36431879 AATAACACATTGTGGACAAGCCACTAC--ATATT-TAGATATACTGCCATT
1 GA-AACACATTGTGGACAAGCCACCACTGAT-TTGTAGATAAACTGCCACT
* *
36431927 GAAACACATTGTGGACAAGACACCACGGATTTGTAGATAAACT
1 GAAACACATTGTGGACAAGCCACCACTGATTTGTAGATAAACT
36431970 ATAACATACT
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
47 22 0.29
48 19 0.25
49 13 0.17
50 16 0.21
51 3 0.04
52 4 0.05
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (49 bp):
GAAACACATTGTGGACAAGCCACCACTGATTTGTAGATAAACTGCCACT
Found at i:36439532 original size:75 final size:74
Alignment explanation
Indices: 36439356--36439582 Score: 242
Period size: 75 Copynumber: 3.0 Consensus size: 74
36439346 ACAGTTTTGG
* ** * **
36439356 GCCCAGCGCTAGTCAGATAAACCAACAAATGTAATGACGTACCCAA-CACTAGTTAGATAAACTG
1 GCCCAGCGCTAGTCGGATAAACTGACAAGTGTAATGGTGTA-CCAAGCACTAGTTAGATAAACT-
*
36439420 AAAAAAGTT-T
64 AAGAAAGTTGT
* * *
36439430 CGCCCAGCTCTAGTCGGATAAACTGACAAGTGTAATGGTGTTCCTAGCACTAGTTAGATAAACTA
1 -GCCCAGCGCTAGTCGGATAAACTGACAAGTGTAATGGTGTACCAAGCACTAGTTAGATAAACTA
36439495 ACGAAAGTTGT
65 A-GAAAGTTGT
* * * * * *
36439506 GCCCAGCGCTAGTCGGATAAATTGACAAGTATAATGGTATGCCAAGTACTAGTCAGATAAACTGA
1 GCCCAGCGCTAGTCGGATAAACTGACAAGTGTAATGGTGTACCAAGCACTAGTTAGATAAACT-A
*
36439571 TGAAAGTTGT
65 AGAAAGTTGT
36439581 GC
1 GC
36439583 TTAGTGCTAA
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
74 5 0.04
75 122 0.95
76 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (74 bp):
GCCCAGCGCTAGTCGGATAAACTGACAAGTGTAATGGTGTACCAAGCACTAGTTAGATAAACTAA
GAAAGTTGT
Found at i:36439599 original size:75 final size:75
Alignment explanation
Indices: 36439398--36439639 Score: 206
Period size: 75 Copynumber: 3.2 Consensus size: 75
36439388 AATGACGTAC
* * * *
36439398 CCAA-CACTAGTTAGATAAACTGAA-AAAAGTT-TCGCCCAGCTCTAGTCGGATAAACTGACAAG
1 CCAAGCACTAGTCAGATAAACT-AACGAAAGTTGT-GCCCAGCGCTAATCGGATAAACTGACAAG
* * *
36439460 TGTAATGGTGTT
64 TATAATGGTATG
* * * *
36439472 CCTAGCACTAGTTAGATAAACTAACGAAAGTTGTGCCCAGCGCTAGTCGGATAAATTGACAAGTA
1 CCAAGCACTAGTCAGATAAACTAACGAAAGTTGTGCCCAGCGCTAATCGGATAAACTGACAAGTA
36439537 TAATGGTATG
66 TAATGGTATG
* * * ** * * ***
36439547 CCAAGTACTAGTCAGATAAACTGATGAAAGTTGTGCTTAGTGCTAAAT-GGATAAACCGATGGGT
1 CCAAGCACTAGTCAGATAAACTAACGAAAGTTGTGCCCAGCGCT-AATCGGATAAACTGACAAGT
*
36439611 ATAATGGTGTG
65 ATAATGGTATG
*
36439622 TCC-AGCACTAGTAAGATA
1 -CCAAGCACTAGTCAGATA
36439640 TATAACACCC
Statistics
Matches: 139, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
74 5 0.04
75 129 0.93
76 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (75 bp):
CCAAGCACTAGTCAGATAAACTAACGAAAGTTGTGCCCAGCGCTAATCGGATAAACTGACAAGTA
TAATGGTATG
Found at i:36441237 original size:50 final size:49
Alignment explanation
Indices: 36441176--36441282 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 49
36441166 ACATGGTAGT
* *
36441176 TCTCATATCGGTGC-CCATGCCATGCCCCAGACATGGTCTTACGGAGGACC
1 TCTCATATCGGTGCAACA-G-CATGCCCCAGACATGGTCTTACAGAGGACC
* * *
36441226 TCTCATCTCGGTGCGAACAGCATGTCCCAGACATGGTCTTACATAGGACC
1 TCTCATATCGGTGC-AACAGCATGCCCCAGACATGGTCTTACAGAGGACC
36441276 TCTCATA
1 TCTCATA
36441283 ACCTCAATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
50 46 0.94
51 1 0.02
52 2 0.04
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (49 bp):
TCTCATATCGGTGCAACAGCATGCCCCAGACATGGTCTTACAGAGGACC
Found at i:36448872 original size:50 final size:47
Alignment explanation
Indices: 36448744--36448873 Score: 129
Period size: 49 Copynumber: 2.6 Consensus size: 47
36448734 GATAACAACA
*
36448744 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTAC
1 TGCCAATGCCATG-CCCAGACATGGTCTTACATGGGATGTTTCCTG-AC
* * *
36448793 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCACATCG-G
1 TGCCAATGCCAT-GCCCAGACATGGTCTTACATGGGATGTT-TC-C-T-GAC
*
36448843 TGCCCATGCCATGCCCTAGACATGGTCTTAC
1 TGCCAATGCCATGCCC-AGACATGGTCTTAC
36448874 GGGGGGCCTC
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
48 3 0.04
49 38 0.56
50 25 0.37
51 1 0.01
52 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (47 bp):
TGCCAATGCCATGCCCAGACATGGTCTTACATGGGATGTTTCCTGAC
Found at i:36448937 original size:50 final size:50
Alignment explanation
Indices: 36448744--36448936 Score: 174
Period size: 50 Copynumber: 3.9 Consensus size: 50
36448734 GATAACAACA
* ** * * **
36448744 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTC-CTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCACTTTGG
* * ** * *
36448793 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCACATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCACTTTGG
* ** * *
36448843 TGCCCATGCCATG-CCCTAGACATGGTCTTACGGGGGGCCTCTCATTTTGG
1 TGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGACCTCTCACTTTGG
* * *
36448893 TGCCAACGCCATGTCCCAAACATGGTCTTACACGGGACCTCTCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCA
36448937 TAACCTCAAT
Statistics
Matches: 113, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
49 40 0.35
50 70 0.62
51 3 0.03
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCACTTTGG
Found at i:36458502 original size:27 final size:27
Alignment explanation
Indices: 36458471--36458615 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
36458461 CCCCAAAATA
* *
36458471 GGTAAAATAACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
36458498 GGTAAAATGACCGAATTACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
36458525 GATAGAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
36458552 GGTAAAATGATCGAAATA-CCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
36458578 GGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
36458605 GGTAAAATGAC
1 GGTAAAATGAC
36458616 TGTTATACCC
Statistics
Matches: 102, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
26 24 0.24
27 78 0.76
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:36458601 original size:53 final size:54
Alignment explanation
Indices: 36458468--36458615 Score: 210
Period size: 53 Copynumber: 2.8 Consensus size: 54
36458458 AGACCCCAAA
* *
36458468 ATAGG-TAAAATAACCAAAATACCCCTATAGGGTAAAATGACCGAATTACCCCC
1 ATAGGATAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCC
* * *
36458521 ATAGGATAGAATGACCAAAATACCCCTATAGGGTAAAATGATCGAAATA-CCCT
1 ATAGGATAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCC
* **
36458574 ATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
1 ATAGGATAAAATGACCAAAATACCCCTATAGGGTAAAATGAC
36458616 TGTTATACCC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 45 0.54
54 39 0.46
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (54 bp):
ATAGGATAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCC
Found at i:36458639 original size:27 final size:27
Alignment explanation
Indices: 36458486--36458648 Score: 118
Period size: 27 Copynumber: 6.1 Consensus size: 27
36458476 AATAACCAAA
* * *
36458486 ATACCCCTATAGGGTAAAATGACCG-A
1 ATACCCCTATAGGATAAAATGACTGTT
* * ****
36458512 ATTACCCCCATAGGATAGAATGACCAAA
1 A-TACCCCTATAGGATAAAATGACTGTT
* **
36458540 ATACCCCTATAGGGTAAAATGA-TCGAA
1 ATACCCCTATAGGATAAAATGACT-GTT
* **
36458567 ATA-CCCTATAGGGTAAAATGACTGAA
1 ATACCCCTATAGGATAAAATGACTGTT
*
36458593 ATACCCCTATAGGGTAAAATGACTGTT
1 ATACCCCTATAGGATAAAATGACTGTT
*
36458620 ATACCCCTA-AGAGATGAAATGACTGTT
1 ATACCCCTATAG-GATAAAATGACTGTT
36458647 AT
1 AT
36458649 GGCCTTATGT
Statistics
Matches: 118, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
26 27 0.23
27 89 0.75
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
ATACCCCTATAGGATAAAATGACTGTT
Found at i:36461408 original size:75 final size:74
Alignment explanation
Indices: 36461300--36461581 Score: 237
Period size: 75 Copynumber: 3.8 Consensus size: 74
36461290 ACGCTAGTCA
* * * * *
36461300 GATAAACCGACAAATATAATGATGTTCCCAGCACTAGCCAGATAAACAAACGAAAGTTGTGCCCA
1 GATAAATCGACAAGTATAATGGTGTGCCCAGCACTAG-CAGATAAACAAACGAAAGTTGCGCCCA
*
36461365 GTGCTAATTG
65 GTGCTAATCG
* * * **
36461375 GATAAATCGACAAGTATAATGGTATGCCTAGCACTAGTATTG-TAAACTGACGAAAGTTGCGCCC
1 GATAAATCGACAAGTATAATGGTGTGCCCAGCACTAGCA--GATAAACAAACGAAAGTTGCGCCC
*
36461439 AGTGCTAGTCG
64 AGTGCTAATCG
* * * ** *
36461450 AATAAATGGACGAGTATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGTTGCGCCC-
1 GATAAATCGACAAGTATAATGGTGTGCCCAGCACTAG-CAGATAAACAAACGAAAGTTGCGCCCA
* *
36461514 GACGCTAGTCG
65 G-TGCTAATCG
** * * * **
36461525 GATAAA-CTGATGAGTATAATGGTGTGCCCCGTACTAGTCAGATTAACTGACGAAAGT
1 GATAAATC-GACAAGTATAATGGTGTGCCCAGCACTAG-CAGATAAACAAACGAAAGT
36461582 ATTTGCCTGC
Statistics
Matches: 174, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
74 3 0.02
75 169 0.97
76 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (74 bp):
GATAAATCGACAAGTATAATGGTGTGCCCAGCACTAGCAGATAAACAAACGAAAGTTGCGCCCAG
TGCTAATCG
Found at i:36461573 original size:40 final size:39
Alignment explanation
Indices: 36461461--36461574 Score: 107
Period size: 35 Copynumber: 3.0 Consensus size: 39
36461451 ATAAATGGAC
*
36461461 GAGTATAATGGTGTGCCCAGCACTAGTCAGATAAACTGAT
1 GAGTATAATGGTGTGCCCCG-ACTAGTCAGATAAACTGAT
*
36461501 --G-A-AA--GT-TGCGCCCGACGCTAGTCGGATAAACTGAT
1 GAGTATAATGGTGTGC-CCCGA--CTAGTCAGATAAACTGAT
*
36461536 GAGTATAATGGTGTGCCCCGTACTAGTCAGATTAACTGA
1 GAGTATAATGGTGTGCCCCG-ACTAGTCAGATAAACTGA
36461575 CGAAAGTATT
Statistics
Matches: 59, Mismatches: 4, Indels: 22
0.69 0.05 0.26
Matches are distributed among these distances:
33 4 0.07
34 5 0.08
35 17 0.29
36 2 0.03
37 2 0.03
38 2 0.03
39 2 0.03
40 15 0.25
41 6 0.10
42 4 0.07
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
GAGTATAATGGTGTGCCCCGACTAGTCAGATAAACTGAT
Found at i:36463566 original size:15 final size:15
Alignment explanation
Indices: 36463546--36463575 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36463536 GGATTGTTGG
36463546 TGCCAATCCTACACC
1 TGCCAATCCTACACC
*
36463561 TGCCAATCCTGCACC
1 TGCCAATCCTACACC
36463576 AATTGGTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.10, T:0.20
Consensus pattern (15 bp):
TGCCAATCCTACACC
Found at i:36473422 original size:50 final size:51
Alignment explanation
Indices: 36473326--36473423 Score: 128
Period size: 50 Copynumber: 1.9 Consensus size: 51
36473316 GCTTGCTGCC
** * *
36473326 TTTAATTGTCGTACTTTGAACCCTTTTTAGAGTAGCAAATACATCCAGCTT
1 TTTAATTGTCGTACACTGAACCCTTTTGAGAGCAGCAAATACATCCAGCTT
*
36473377 TTTAATTGTCGTACACTGAA-CCTTTTG-GAAGCAGCACATACATCCAG
1 TTTAATTGTCGTACACTGAACCCTTTTGAG-AGCAGCAAATACATCCAG
36473424 TCTACAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.02
50 22 0.54
51 18 0.44
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (51 bp):
TTTAATTGTCGTACACTGAACCCTTTTGAGAGCAGCAAATACATCCAGCTT
Found at i:36473554 original size:26 final size:25
Alignment explanation
Indices: 36473480--36473563 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 25
36473470 CAACTGGACA
*
36473480 CAATTAATTTG-TCTAAACAATAGAC
1 CAATTAATTTGTTCTAAACTA-AGAC
* *
36473505 ACAATTAATGTGTAT-GAAA-TAAGAC
1 -CAATTAATTTGT-TCTAAACTAAGAC
36473530 CAATTTAATTTGTTCTAAACTAAGAGC
1 CAA-TTAATTTGTTCTAAACTAAGA-C
*
36473557 AAATTAA
1 CAATTAA
36473564 ATCACATATT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
24 4 0.09
25 15 0.33
26 20 0.43
27 6 0.13
28 1 0.02
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (25 bp):
CAATTAATTTGTTCTAAACTAAGAC
Found at i:36479070 original size:17 final size:17
Alignment explanation
Indices: 36479044--36479088 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
36479034 TGAAAGATCT
36479044 CCGA-CGAGCTTCCAAA
1 CCGATCGAGCTTCCAAA
36479060 CCGATCGAGCTTCCAAA
1 CCGATCGAGCTTCCAAA
* *
36479077 TCGATCAAGCTT
1 CCGATCGAGCTT
36479089 TCAATAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (17 bp):
CCGATCGAGCTTCCAAA
Found at i:36481667 original size:24 final size:24
Alignment explanation
Indices: 36481633--36481678 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
36481623 AGATGAAATG
36481633 ATTTTGCTTTATTTAATTTAACCT
1 ATTTTGCTTTATTTAATTTAACCT
*
36481657 ATTTTGTTTTATTTAATTTAAC
1 ATTTTGCTTTATTTAATTTAAC
36481679 ATTAATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (24 bp):
ATTTTGCTTTATTTAATTTAACCT
Found at i:36491053 original size:43 final size:42
Alignment explanation
Indices: 36490982--36491401 Score: 464
Period size: 43 Copynumber: 9.7 Consensus size: 42
36490972 GCGTCGCTAA
* * * *
36490982 CTTTAGCGGCGTTTTCTCCCACAAACGCCACTAAAGA-CAACAAC
1 CTTTAGCGGCGCTTT-T-CCACAAACGCCGCTATAGATCAA-GAC
*
36491026 CTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAAGAT
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGATCAAGAC
* *
36491069 CTTTAGCGGCGCTTTTTACACAAACGCCGCTATAGCTCAAGAC
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGATCAAGAC
* * * * * *
36491112 CTTTAGCGGCAGTTTTTACATAAATGCCGCTGTAGATTAAGAC
1 CTTTAGCGGC-GCTTTTCCACAAACGCCGCTATAGATCAAGAC
* *
36491155 CTTTAGCGGCGCTTTTCTCACAAACACCACTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTATAGATCAAGAC
** * *
36491198 CTTTAGCGGCGCTTTTCCAACAAATACCACTATAGCTCAAGAC
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAAGAC
* * *
36491241 CTTTAGCGGCACTTTTATCACAAACGCCGCTATAGATCAAGAT
1 CTTTAGCGGCGCTTTT-CCACAAACGCCGCTATAGATCAAGAC
* ** *
36491284 CTTTAGCGACGCTTTTCCAACAAACGAGGCTATAGCTCAAGAC
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAAGAC
* *
36491327 CTTTAGCGACACTTTTCTCACAAACGCCGCTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTATAGATCAAGAC
*
36491370 CTTTAGCGGCACTTTTCACACAAACGCCGCTA
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTA
36491402 GTAACATATC
Statistics
Matches: 324, Mismatches: 44, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
42 7 0.02
43 296 0.91
44 18 0.06
45 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCACAAACGCCGCTATAGATCAAGAC
Found at i:36491474 original size:30 final size:32
Alignment explanation
Indices: 36491440--36491501 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
36491430 ATAATATTTA
36491440 TTTCTATGATAAATATT-A-TTT-AAATTAAAT
1 TTTCTATGA-AAATATTAACTTTAAAATTAAAT
*
36491470 TTTCTATGAAAATTTTAACTTTAAAATTAAAT
1 TTTCTATGAAAATATTAACTTTAAAATTAAAT
36491502 ATAAAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 10 0.36
31 3 0.11
32 9 0.32
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (32 bp):
TTTCTATGAAAATATTAACTTTAAAATTAAAT
Found at i:36491535 original size:35 final size:34
Alignment explanation
Indices: 36491483--36491548 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
36491473 CTATGAAAAT
*
36491483 TTTAACTTTAAAATTAAATATAA-AAATTAATGAA
1 TTTAAATTTAAAATTAAA-ATAATAAATTAATGAA
*
36491517 TTTAAATTTAGAATTTAAAATAATAAATTAAT
1 TTTAAATTTA-AAATTAAAATAATAAATTAAT
36491549 AACACAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (34 bp):
TTTAAATTTAAAATTAAAATAATAAATTAATGAA
Found at i:36491701 original size:43 final size:43
Alignment explanation
Indices: 36491635--36491718 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
36491625 ACATATGCAA
* * *
36491635 GGTAATAAAACATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
* *
36491678 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATC
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATC
36491719 AAAGATATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:36497393 original size:15 final size:15
Alignment explanation
Indices: 36497373--36497401 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36497363 TAAATCTAAC
36497373 CCCTAAATCCATAAA
1 CCCTAAATCCATAAA
36497388 CCCTAAATCCATAA
1 CCCTAAATCCATAA
36497402 CTGATCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCCATAAA
Found at i:36497675 original size:13 final size:13
Alignment explanation
Indices: 36497648--36497685 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
36497638 TATCGTATCT
*
36497648 TTTACAATT-ATA
1 TTTAAAATTAATA
*
36497660 TTTGAAATTAATA
1 TTTAAAATTAATA
36497673 TTTAAAATTAATA
1 TTTAAAATTAATA
36497686 CTCTAATTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (13 bp):
TTTAAAATTAATA
Found at i:36498331 original size:39 final size:38
Alignment explanation
Indices: 36498283--36498433 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 38
36498273 GGGCTTAGGC
36498283 TTTTT-GCGGCGCTTTTTAGAAAACGCCGCTAATGCT-TA
1 TTTTTAGCGGCG-TTTTTA-AAAACGCCGCTAATGCTCTA
*
36498321 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCTA
1 TTTTTAGCGGCGTTTT-TAAAAA-CGCCGCTAATGCTCTA
** * *
36498361 CCTTTAGCGGCGTTTTTATAAGAGCGCCGCTAATGCTCAA
1 TTTTTAGCGGCGTTTTTA-AA-AACGCCGCTAATGCTCTA
* *
36498401 TTTTTAGTGGCGTTTTTATCCAAACGCCGCTAA
1 TTTTTAGCGGCGTTTTTA--AAAACGCCGCTAA
36498434 AAACCTGTTT
Statistics
Matches: 94, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
38 13 0.14
39 21 0.22
40 58 0.62
41 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (38 bp):
TTTTTAGCGGCGTTTTTAAAAACGCCGCTAATGCTCTA
Found at i:36500908 original size:27 final size:27
Alignment explanation
Indices: 36500827--36500916 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
36500817 TTTGACATAT
* *
36500827 ACTGGTGAACCCTAGCTCACCAAACCA
1 ACTGGCGAACCCCAGCTCACCAAACCA
* * *
36500854 ACAGGTGAACCCCCAGCTCACCAGACCA
1 ACTGGCGAA-CCCCAGCTCACCAAACCA
*
36500882 ACTGGCGAACCCCAGCTCGCCAAACCA
1 ACTGGCGAACCCCAGCTCACCAAACCA
36500909 ACTGGCGA
1 ACTGGCGA
36500917 GCACCAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 32 0.58
28 23 0.42
ACGTcount: A:0.31, C:0.40, G:0.19, T:0.10
Consensus pattern (27 bp):
ACTGGCGAACCCCAGCTCACCAAACCA
Found at i:36505662 original size:770 final size:760
Alignment explanation
Indices: 36503773--36506511 Score: 2512
Period size: 750 Copynumber: 3.6 Consensus size: 760
36503763 TGTAAATGGA
* * ** * *
36503773 AACTCCCTCAAGTTCGCCTAGAAAACTTGCCCTTGGAAGACTAAC-GAACACCTGTGGTACACTT
1 AACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAACAG-ACACC-ATGCTACACTT
* * ** * * * * *
36503837 TATTGACCAATATACTGTCTCCAAATGAACTAGT-TTCAATCATGCTCTTATCTAT-GTTTCTAT
64 TATTGACCAATATAATGTCCCCAAACAAACTAGTGAT-AGTCACGCCCTTATCTATGGTTTCTAC
* * * * * * * *
36503900 TGGAA-TCCTCCACTCACAAGCTAGTTCACTCAAAATATACTAGTGCGTGGAACTAGATTCAATA
128 TAGAATTCC-CAACTGACTAGCTAGTTCGCTGAAAACATACTAGTGCGTGGAACTAGATTCAATG
* *** * * * * *
36503964 AAGGAAAATAATGGAATAGTTTGTAGAGTGAAGGTAGTTGTGATCACATC-GATTAAGCCCTAAT
192 AAGGAAAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCAG-TCAAGCCTTGAT
* * * * * **
36504028 CTTGTGGTTCCCTTACAATATAAACTCGTGCGAGGCCTCCTAACTCATCTTTCCTAGCAAC-TGT
255 CTTGTGGTTCCCTTACAACATAGACT-ATGCAAGGCCTCCTGACTCATC-TTGGTAGCAACATG-
* * * ** ** * * ** * * *
36504092 TTGAGATAAAATTTGTTGTGCAACTTGCCTTGTATCACAGCCTTTTCCTTTACCTTGTGCACGAG
317 -TGAGATAAAGTTCGCTGCCCAACTTG-CTTGTATCATTGCCTCTTCATCGACCTCGTCCATGAG
* ** * * * *
36504157 AACCAGCTTGCACTT-AG-AGGGGGTCACATTTTGCACATGTGA-----TT-TCTCT-T--G---
380 CACCAGCTCACACTTGGGTA-GGGGTCACATTCTGCACTTGAGATTTTCTTGTCTCTCTAGGCAA
* * *
36504208 TC---TAT--T-TGGGCAATCTTTCCTCGTCTAGAAACACATCAGGAAAGTCCCTCGCAATACGT
444 TCTTTTATCATATGGGAAATCTTTTCTCGTCTAGAAACACATCAGGAAAGT-CCTCACAATACGT
* * * *
36504267 ATCTTGCGAACCCTTACAGCCTTGTCCTCCGAACCCATCATAAATACGAGATAGGCTTCTTAGCC
508 ATCTCGCGAACCCCTATAGCCTTGTCCT-CGAACCCATCAAAAATACGAGATAGGCTT-TTAGCC
* * * ** * *** *
36504332 CTAACCCAACATCTTTAT-TGCTTTCAATATTGAGACCACAATAGACATAAATTGAGCTCACTCA
571 CTTACCCAACATCTTT-TCTGCTTTCATTGTCAAAATGGCATTAGACATAAATTGAGCTCACTCA
* * * *
36504396 CCTACCACTACAATTTCCTTACCTTCACTGTTTCGTAAAATGACTCTTTTTTAGTTCCAAGTCAA
635 CCTACCACTACAATTTCCTTGCCTTCACTATTTCGTAAAGTGACTC-TTTTTAGTTCGAAGTCAA
* * * *
36504461 TATTGGCTTTATGCTCAGCCAACTAATCCCATTCCC-AAGCTTACATCGAACACATAGAACGAA
699 TATTGGCTTTATGCTCAGCCAACCAAT-CCA-TCCCAAAGATTACATCGAACACATAGAATGAC
* * * *
36504524 AACT-GATCATGTTCGAGTCA-AAAACTTGCCCTTGGATCACTAACAGACA-C-T--TACGCTTT
1 AACTCCATCAAGTTCGCGT-AGAAAACTTGCCCTTGGATCACTAACAGACACCATGCTACACTTT
* *
36504583 ATTGACCAATATAATGTCCCTAAACGAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTACTA
65 ATTGACCAATATAATGTCCCCAAACAAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTACTA
* ** * * * * *
36504648 GAATTCCCAACTCACGCGCTAGTTCGCTGAAAACATACGAGTGTGTGGAAAC-ATATTAAATCAA
130 GAATTCCCAACTGACTAGCTAGTTCGCTGAAAACATACTAGTGCGTGG-AACTAGATTCAATGAA
* *
36504712 GGAAAAAGAATGAATAGTTCACAA-AGAT-AAGGTACTTGTGATAACATCAGTCAAACCTTGATC
194 GG-AAAACAATGAATAGTTCA-AAGAG-TGAAGGTACTTGTGATAACATCAGTCAAGCCTTGATC
* * *
36504775 TTGTGGTTCCCGTACAACATAGACTCATGCGAGGCCTTCTGA-TACATCTTGGGTAGCAACAGTG
256 TTGTGGTTCCCTTACAACATAGACT-ATGCAAGGCCTCCTGACT-CATCTT-GGTAGCAACA-TG
* * * * * *
36504839 TAAAATATAGTACGCTGCCCAACTTGCCTTGTATTATTGCGTCTTCATCGACCTCGTCCATGAGC
317 TGAGATAAAGTTCGCTGCCCAACTTG-CTTGTATCATTGCCTCTTCATCGACCTCGTCCATGAGC
36504904 ACCAGCTCACACTTGGGTAGGGGTCACATTCTGCACTTGAGATTTTTCTTGTCTCTCTAGGCAAT
381 ACCAGCTCACACTTGGGTAGGGGTCACATTCTGCACTTGAGA-TTTTCTTGTCTCTCTAGGCAAT
* * * *
36504969 CTTTTATCATATGGGAAATCTTTTCTCGTCTAGAAGCACATCAGGAAAGTCCTTCAAAAAATGTA
445 CTTTTATCATATGGGAAATCTTTTCTCGTCTAGAAACACATCAGGAAAGTCC-TCACAATACGTA
* * * *
36505034 TCTCGTGAACCCCTATAGCTTTGTCCTACGAACCCATAAAAAATGCGAGATAGGCTTTGTAGCCC
509 TCTCGCGAACCCCTATAGCCTTGTCCT-CGAACCCATCAAAAATACGAGATAGGCTTT-TAGCCC
* * *
36505099 TTACCCAACATCTTTTCTGCTATCATTGTCAAAATGGCATTAGACATAAATTAAGGTCACTCACC
572 TTACCCAACATCTTTTCTGCTTTCATTGTCAAAATGGCATTAGACATAAATTGAGCTCACTCACC
* ** * * * * *
36505164 TACCACTATAATTTCCCGGCCTTCACTATTTCGTAAAGTGACTCTTTTCAATTTGAAATCAATCT
637 TACCACTACAATTTCCTTGCCTTCACTATTTCGTAAAGTGACTCTTTTTAGTTCGAAGTCAATAT
* * * *
36505229 TGGCTATATGCTTAGCCAACCAATCCATCCCAAAGATTATATCGAACACATAGAATGGC
702 TGGCTTTATGCTCAGCCAACCAATCCATCCCAAAGATTACATCGAACACATAGAATGAC
* * * *
36505288 AACTCCATCAAGTTCGCGTAGATAACTTGCCCTTGGATCACTAACAAAAACCTATGCTATACTTT
1 AACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAACAGACACC-ATGCTACACTTT
* * *
36505353 ATTGACCAATATACTATCCCCAAACAAACTAGTGACT-GTCACACCCTTATCTATGGTTTCTACT
65 ATTGACCAATATAATGTCCCCAAACAAACTAGTGA-TAGTCACGCCCTTATCTATGGTTTCTACT
* * * *
36505417 AGAATTCCAAACTGACTAGCTAGTTCGCTCAAAACATACTACTGCGTGGAACTAGATTCAATGTA
129 AGAATTCCCAACTGACTAGCTAGTTCGCTGAAAACATACTAGTGCGTGGAACTAGATTCAATGAA
* ** * * * *
36505482 GGAAAATAATAGAATAGTTCGTAGAGTGAAGGTAGTTGTGATCACATCTGTCAAGCCCTGATCTT
194 GGAAAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCAGTCAAGCCTTGATCTT
* * * *
36505547 ATGGTTCCCTTACAACACAGACTAGTGCAAGGTCTCCTGACTCATCTTGGCTAGCAACGATTTGA
258 GTGGTTCCCTTACAACATAGACTA-TGCAAGGCCTCCTGACTCATCTTGG-TAGCAAC-ATGTGA
* * * * *
36505612 GATAAAGTTTGTTTCCCAACTTGCATTGTATCGTTGCCTTCTTC-TCGACCTTGTCCATGAGCAC
320 GATAAAGTTCGCTGCCCAACTTGC-TTGTATCATTGCC-TCTTCATCGACCTCGTCCATGAGCAC
* ** * * *
36505676 CAGGTCACA-TCCGG-AGGGGGTTACATTTTGCACAT-ATGA-----TT-TCTCT-T-----ATC
383 CAGCTCACACTTGGGTA-GGGGTCACATTCTGCACTTGA-GATTTTCTTGTCTCTCTAGGCAATC
* * * * *
36505726 ---TAGC---TGGGCAATCTTTTCTCGTCTCA-AAACACATCAGGAATGTCACTCACAGTACATA
446 TTTTATCATATGGGAAATCTTTTCTCGTCT-AGAAACACATCAGGAAAGTC-CTCACAATACGTA
* * * * * ** **
36505784 TCTCGCGAACCCCTATAGCCTTATTCTCTGAACCCATCAGAAATATGAGGTAGGCTTCACAATCC
509 TCTCGCGAACCCCTATAGCCTTGTCCTC-GAACCCATCAAAAATACGAGATAGGCTT-TTAGCCC
* * *
36505849 TTACCCAACATCTTTTCTACTTTCATTGTCAATATGGCATTAGACATAAATTGAGCTCGCTCACC
572 TTACCCAACATCTTTTCTGCTTTCATTGTCAAAATGGCATTAGACATAAATTGAGCTCACTCACC
* * * *
36505914 TACCACTACAATATCCTTGCATTCATTATTTCGCAAAGTGACTCTTTTTAGTTCGAAGTCAATAT
637 TACCACTACAATTTCCTTGCCTTCACTATTTCGTAAAGTGACTCTTTTTAGTTCGAAGTCAATAT
*
36505979 TGGCTTTATGCTCAGCCAACCAATCCATCCCAAAGATTACATCAAACACATAGAATGAC
702 TGGCTTTATGCTCAGCCAACCAATCCATCCCAAAGATTACATCGAACACATAGAATGAC
* * **
36506038 AACTCCGTCAAGTTCGCATAGAAAACTTGCCCTTGGATCACTAATGGACACCGATGCTACACTTT
1 AACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAACAGACACC-ATGCTACACTTT
* * * *
36506103 ATTGA-CAATTATATTGTCCACAAATGAAA-TAGTGATAGTCACGCCTTTATCTATGGTTTCTAC
65 ATTGACCAA-TATAATGTCCCCAAA-CAAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTAC
* *
36506166 TAGAATTCCCAACTGACTGGCTAGTTCGCTGAAAACATACTAGTGCGTCGAACTAGATTCAATGA
128 TAGAATTCCCAACTGACTAGCTAGTTCGCTGAAAACATACTAGTGCGTGGAACTAGATTCAATGA
* * * *
36506231 AGGAAAACAATGGAATAGTTCAAAGAGTGAAGTTATTTGTGATAACATCGGCCAAGCCTTGATCT
193 AGGAAAACAAT-GAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCAGTCAAGCCTTGATCT
* * *
36506296 TGTGGTTCCCTTACAACATAGACTCTTGCGAA-GCCTCCTAACTCATCCTCGGTAGCAACAATGT
257 TGTGGTTCCCTTACAACATAGACT-ATGC-AAGGCCTCCTGACTCAT-CTTGGTAGCAAC-ATGT
* * * ** * * * * * *
36506360 GAGATAAAGTTCACTGACTAACTTGTCTTAAATCACTGCCTCTTCTTTGACCTCGTCTACGAGTA
318 GAGATAAAGTTCGCTGCCCAACTTG-CTTGTATCATTGCCTCTTCATCGACCTCGTCCATGAGCA
* * * * * *
36506425 CTATCTCGCACTTGGGTAAGGGTCACATTCTGCACTTGTGATTTCTCTTGTCTATCTAGGCAATC
382 CCAGCTCACACTTGGGTAGGGGTCACATTCTGCACTTGAGATTT-TCTTGTCTCTCTAGGCAATC
36506490 TTTTATCATATGGGAAATCTTT
446 TTTTATCATATGGGAAATCTTT
36506512 CTGGGCAATC
Statistics
Matches: 1602, Mismatches: 293, Indels: 167
0.78 0.14 0.08
Matches are distributed among these distances:
745 54 0.03
746 196 0.12
747 38 0.02
748 3 0.00
749 11 0.01
750 603 0.38
751 38 0.02
752 1 0.00
753 5 0.00
754 5 0.00
755 1 0.00
756 3 0.00
757 3 0.00
758 4 0.00
759 1 0.00
760 2 0.00
761 1 0.00
762 5 0.00
763 9 0.01
764 33 0.02
765 78 0.05
766 187 0.12
767 3 0.00
768 3 0.00
769 37 0.02
770 270 0.17
771 8 0.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (760 bp):
AACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAACAGACACCATGCTACACTTTA
TTGACCAATATAATGTCCCCAAACAAACTAGTGATAGTCACGCCCTTATCTATGGTTTCTACTAG
AATTCCCAACTGACTAGCTAGTTCGCTGAAAACATACTAGTGCGTGGAACTAGATTCAATGAAGG
AAAACAATGAATAGTTCAAAGAGTGAAGGTACTTGTGATAACATCAGTCAAGCCTTGATCTTGTG
GTTCCCTTACAACATAGACTATGCAAGGCCTCCTGACTCATCTTGGTAGCAACATGTGAGATAAA
GTTCGCTGCCCAACTTGCTTGTATCATTGCCTCTTCATCGACCTCGTCCATGAGCACCAGCTCAC
ACTTGGGTAGGGGTCACATTCTGCACTTGAGATTTTCTTGTCTCTCTAGGCAATCTTTTATCATA
TGGGAAATCTTTTCTCGTCTAGAAACACATCAGGAAAGTCCTCACAATACGTATCTCGCGAACCC
CTATAGCCTTGTCCTCGAACCCATCAAAAATACGAGATAGGCTTTTAGCCCTTACCCAACATCTT
TTCTGCTTTCATTGTCAAAATGGCATTAGACATAAATTGAGCTCACTCACCTACCACTACAATTT
CCTTGCCTTCACTATTTCGTAAAGTGACTCTTTTTAGTTCGAAGTCAATATTGGCTTTATGCTCA
GCCAACCAATCCATCCCAAAGATTACATCGAACACATAGAATGAC
Found at i:36511427 original size:15 final size:15
Alignment explanation
Indices: 36511409--36511442 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36511399 AATAAGTTAA
*
36511409 CATATATAAATATAT
1 CATATATAAACATAT
*
36511424 CATATATATACATAT
1 CATATATAAACATAT
36511439 CATA
1 CATA
36511443 AATGTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (15 bp):
CATATATAAACATAT
Found at i:36529375 original size:19 final size:19
Alignment explanation
Indices: 36529337--36529376 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36529327 TTTATTATTA
**
36529337 ATATATTTATAATTGTAAT
1 ATATATTTATAATTAAAAT
*
36529356 ATATATTTGTAATTAAAAT
1 ATATATTTATAATTAAAAT
36529375 AT
1 AT
36529377 TAATATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATATTTATAATTAAAAT
Found at i:36529584 original size:9 final size:8
Alignment explanation
Indices: 36529552--36529586 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
36529542 ATATTCGATA
36529552 TTAATATT
1 TTAATATT
36529560 TTAATATT
1 TTAATATT
36529568 TTAATATT
1 TTAATATT
36529576 TTAAATATT
1 TT-AATATT
36529585 TT
1 TT
36529587 TAAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TTAATATT
Found at i:36531938 original size:28 final size:28
Alignment explanation
Indices: 36531906--36532062 Score: 127
Period size: 28 Copynumber: 5.6 Consensus size: 28
36531896 GATAGTCCCC
* *
36531906 ACGGACATCCACATTTAAGATTGTCTTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
* ** * *
36531934 GCGGACTTCTGCGTTTTAGATCGTCTTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
* *
36531962 ACAGACTTCCACATTTAAGATCGTCCTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
** * * *
36531990 ACAAATTTCTACATTTAAGATCATCTTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
* * * *
36532018 GCGGGCTTCCACATTTTAGATCGT-TCTA
1 ACGGACTTCCACATTTAAGATCGTCT-TG
*
36532046 ACGGGCTTCCACATTTA
1 ACGGACTTCCACATTTA
36532063 CAATAATGCC
Statistics
Matches: 98, Mismatches: 30, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
27 1 0.01
28 97 0.99
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (28 bp):
ACGGACTTCCACATTTAAGATCGTCTTG
Found at i:36533328 original size:12 final size:12
Alignment explanation
Indices: 36533311--36533335 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36533301 GACGGTTTAG
36533311 GCAAGAAAATAA
1 GCAAGAAAATAA
36533323 GCAAGAAAATAA
1 GCAAGAAAATAA
36533335 G
1 G
36533336 GAGAAACAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (12 bp):
GCAAGAAAATAA
Found at i:36534954 original size:25 final size:25
Alignment explanation
Indices: 36534926--36534983 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
36534916 ACCTTAGCAC
36534926 GCTCTCTGATTATTAACACATCAGT
1 GCTCTCTGATTATTAACACATCAGT
* *
36534951 GCTCTCTGATTATTAGCACATCTGT
1 GCTCTCTGATTATTAACACATCAGT
*
36534976 TCTCTCTG
1 GCTCTCTG
36534984 TATAGTACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (25 bp):
GCTCTCTGATTATTAACACATCAGT
Found at i:36537724 original size:41 final size:41
Alignment explanation
Indices: 36537670--36537783 Score: 158
Period size: 41 Copynumber: 2.8 Consensus size: 41
36537660 TTAATTAAAA
*
36537670 CAGATTCAACGGCACATAGCCTGCTAGACTTATAGAC-TGATT
1 CAGA-TCACCGGCACATAGCCTGCTAGACTTATA-ACTTGATT
**
36537712 CAGATCACCGGCACATAGCCTGCTAGGTTTATAACTTGATT
1 CAGATCACCGGCACATAGCCTGCTAGACTTATAACTTGATT
* *
36537753 CAGACCACCGGCACGTAGCCTGCTAGACTTA
1 CAGATCACCGGCACATAGCCTGCTAGACTTA
36537784 AAGTCTGAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
40 2 0.03
41 58 0.91
42 4 0.06
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (41 bp):
CAGATCACCGGCACATAGCCTGCTAGACTTATAACTTGATT
Found at i:36546205 original size:41 final size:41
Alignment explanation
Indices: 36546151--36546264 Score: 165
Period size: 41 Copynumber: 2.8 Consensus size: 41
36546141 TTAATTAAAA
* *
36546151 CAGATTCAACGGCACATAGCCTGCTAGACTTATAGCCTGATT
1 CAGA-TCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
* **
36546193 CAGATCACCGGCACATAGCTTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
*
36546234 CAGATCACCGGCACGTAGCCTGCTAGACTTA
1 CAGATCACCGGCACATAGCCTGCTAGACTTA
36546265 AAGTATGAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
41 59 0.94
42 4 0.06
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (41 bp):
CAGATCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
Found at i:36546935 original size:2 final size:2
Alignment explanation
Indices: 36546928--36546978 Score: 52
Period size: 2 Copynumber: 26.0 Consensus size: 2
36546918 CAATAACTTT
* * *
36546928 TA TA TA TA TA TG TA TA TA TA T- TA TA GCA T- TA TA TA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
36546969 TA TA TA TA TA
1 TA TA TA TA TA
36546979 CATGCTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:36546978 original size:12 final size:12
Alignment explanation
Indices: 36546929--36546981 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
36546919 AATAACTTTT
**
36546929 ATATATATATGT
1 ATATATATATAC
36546941 ATATATATTATAGC
1 ATATATA-TATA-C
36546955 ATTATATATATAC
1 A-TATATATATAC
36546968 ATATATATATAC
1 ATATATATATAC
36546980 AT
1 AT
36546982 GCTTATTCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
12 20 0.56
13 5 0.14
14 5 0.14
15 6 0.17
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (12 bp):
ATATATATATAC
Found at i:36551664 original size:23 final size:22
Alignment explanation
Indices: 36551613--36551664 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
36551603 CCTCGTCTTT
*
36551613 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
36551635 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
36551658 TTCTTTT
1 TTCTTTT
36551665 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:36556447 original size:22 final size:22
Alignment explanation
Indices: 36556405--36556447 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
36556395 AACTTAGTCC
* *
36556405 TTTTTCAATTCTAAGCTTAAAG
1 TTTTTCAATTCTAAACCTAAAG
36556427 TTTTTCAATT-TAACACCTAAA
1 TTTTTCAATTCTAA-ACCTAAA
36556448 ACTTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.44
Consensus pattern (22 bp):
TTTTTCAATTCTAAACCTAAAG
Found at i:36570748 original size:16 final size:16
Alignment explanation
Indices: 36570729--36570765 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
36570719 ACACACATGG
*
36570729 CAAAGTACACAAAACA
1 CAAAATACACAAAACA
*
36570745 CAAAATACACAAAATA
1 CAAAATACACAAAACA
36570761 CAAAA
1 CAAAA
36570766 CACAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.68, C:0.22, G:0.03, T:0.08
Consensus pattern (16 bp):
CAAAATACACAAAACA
Found at i:36573792 original size:14 final size:14
Alignment explanation
Indices: 36573773--36573803 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
36573763 GATGTGGATG
36573773 AAATAAGGTGTCTC
1 AAATAAGGTGTCTC
36573787 AAATAAGGTGTCTC
1 AAATAAGGTGTCTC
36573801 AAA
1 AAA
36573804 GAGAATCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (14 bp):
AAATAAGGTGTCTC
Found at i:36578008 original size:26 final size:26
Alignment explanation
Indices: 36577978--36578029 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
36577968 CACCACTGAA
*
36577978 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
36578004 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
36578030 CTTTTTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:36578159 original size:104 final size:102
Alignment explanation
Indices: 36577946--36578211 Score: 397
Period size: 104 Copynumber: 2.6 Consensus size: 102
36577936 TAACCGTTAT
* *
36577946 CGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 CGGTGGAT-ACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
**
36578011 ATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
65 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* *
36578049 CGGTGGATATCGCACTTAGCATCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTCAGGGG
1 CGGTGGATA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
36578114 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
64 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * **
36578153 TGGTGGATCACGCCCATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAT-ACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
36578212 TTTATATACA
Statistics
Matches: 147, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
103 55 0.37
104 91 0.62
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (102 bp):
CGGTGGATACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:36578574 original size:30 final size:30
Alignment explanation
Indices: 36578547--36578604 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36578537 CCACCCAACT
36578547 TTTTGAAAAATTACAATTTTGCCCCCAAAG
1 TTTTGAAAAATTACAATTTTGCCCCCAAAG
* * * *
36578577 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
36578605 GCTCAGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAG
Found at i:36581286 original size:3 final size:3
Alignment explanation
Indices: 36581278--36581309 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
36581268 GATCACCATT
36581278 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
36581310 TTTCTAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:36587324 original size:3 final size:3
Alignment explanation
Indices: 36587316--36587341 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36587306 TATCACCATT
36587316 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
36587342 TTTCTAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:36587681 original size:43 final size:42
Alignment explanation
Indices: 36587633--36587760 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 42
36587623 AACTTGTACA
36587633 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-CACATATCG
*
36587676 ATGCC-ACTGTCCCAGATAG-GGTCTTACACT-TAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACA-TGT-AACACATA-TCG
* *
36587719 ATGCCAACGTCCCAGACATGGTCTTACACGATAACACATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAACACATATC
36587761 AGAAATCCTA
Statistics
Matches: 71, Mismatches: 4, Indels: 20
0.75 0.04 0.21
Matches are distributed among these distances:
42 3 0.04
43 60 0.85
44 8 0.11
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAACACATATCG
Found at i:36589619 original size:47 final size:47
Alignment explanation
Indices: 36589563--36589657 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
36589553 TGGTAATTTG
* * * *
36589563 AGCCCATCACGTTCTTGAGCTTGAGTTGGGCCTTTGTGACTTGTATC
1 AGCCCATCACGTTCTTGAGCTTAAATTGGGCCTTTGTAACTCGTATC
36589610 AGCCCATCACGTTCTTGAGCTTAAATTGGGCCTTTGTAACTCGTATC
1 AGCCCATCACGTTCTTGAGCTTAAATTGGGCCTTTGTAACTCGTATC
36589657 A
1 A
36589658 ATATCTTTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (47 bp):
AGCCCATCACGTTCTTGAGCTTAAATTGGGCCTTTGTAACTCGTATC
Found at i:36607645 original size:30 final size:30
Alignment explanation
Indices: 36607609--36607673 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
36607599 TATGATTGAT
36607609 AAATATGCACCAACTTGAAGGAGGGTGTTG
1 AAATATGCACCAACTTGAAGGAGGGTGTTG
36607639 AAATATGCACCAACTTGAAGGAGGGTGTTG
1 AAATATGCACCAACTTGAAGGAGGGTGTTG
36607669 AAATA
1 AAATA
36607674 CATGAAGCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (30 bp):
AAATATGCACCAACTTGAAGGAGGGTGTTG
Found at i:36614098 original size:48 final size:48
Alignment explanation
Indices: 36614046--36614151 Score: 149
Period size: 48 Copynumber: 2.2 Consensus size: 48
36614036 TATTGGCAAT
* *
36614046 TATGTGGTGGTTTACCCATGATGTGCTATATAACCGTTTATTGGTATC
1 TATGTGGTGGTTTACCCATGATGTGCTATATAACCGTTCATCGGTATC
* * * * *
36614094 TATGTGGTGGTTTATCCGTGATGTGCTATGTGATCGTTCATCGGTATC
1 TATGTGGTGGTTTACCCATGATGTGCTATATAACCGTTCATCGGTATC
36614142 TATGTGGTGG
1 TATGTGGTGG
36614152 CTTGTCCACA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.17, C:0.13, G:0.28, T:0.42
Consensus pattern (48 bp):
TATGTGGTGGTTTACCCATGATGTGCTATATAACCGTTCATCGGTATC
Found at i:36626173 original size:101 final size:102
Alignment explanation
Indices: 36626056--36626239 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 102
36626046 AAAGTGATGG
36626056 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGAT-A-CGTAACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG-AATGATAATCGTAACATGTGTAGT
*
36626119 ACTATGTGCAGGCTACTATGCATACTGGATAGTTTCGA
65 ACTATGTGCAAGCTACTATGCATACTGGATAGTTTCGA
* * * * * *
36626157 TCACGTGTGTAGTACTATGTGCGGGCTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATCGTAACATGTGTAGTA
36626222 CTATGTGCAAGCTACTAT
66 CTATGTGCAAGCTACTAT
36626240 ATGAACCGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.53
102 31 0.42
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATCGTAACATGTGTAGTA
CTATGTGCAAGCTACTATGCATACTGGATAGTTTCGA
Found at i:36626217 original size:51 final size:50
Alignment explanation
Indices: 36626052--36626238 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 50
36626042 AGTGAAAGTG
* * * *
36626052 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCG-GATGGT
* * * *
36626103 A-CGTAACATGTGTAGTACTATGTGCAGGCTACTA--TGCATACTGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAT-C-GGATGGT
* * * *
36626152 TTCGATCACGTGTGTAGTACTATGTGCGGGCTACTACGTGTATCGGATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGT
*
36626203 AATGGTCACATGTGTAGTACTATGTGCAAGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
36626239 TATGAACCGA
Statistics
Matches: 108, Mismatches: 21, Indels: 14
0.76 0.15 0.10
Matches are distributed among these distances:
48 3 0.03
49 4 0.04
50 31 0.29
51 64 0.59
52 2 0.02
53 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGT
Found at i:36626295 original size:45 final size:45
Alignment explanation
Indices: 36626244--36626338 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
36626234 TACTATATGA
* *
36626244 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
36626289 ACCGAACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
36626334 ACCGA
1 ACCGA
36626339 TGATCTGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:36633028 original size:39 final size:40
Alignment explanation
Indices: 36632927--36633150 Score: 255
Period size: 39 Copynumber: 5.7 Consensus size: 40
36632917 TTGAATGATG
* *
36632927 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36632966 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36633007 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36633046 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36633085 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36633124 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36633151 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36633164 original size:40 final size:40
Alignment explanation
Indices: 36632928--36633150 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
36632918 TGAATGATGT
* * * *
36632928 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36632968 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
36633008 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-A
36633047 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36633085 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36633126 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36633151 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 74 0.46
40 78 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36633172 original size:79 final size:79
Alignment explanation
Indices: 36632980--36633183 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
36632970 GGACTAAGAT
** * * * *
36632980 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
36633044 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** *
36633058 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
36633122 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * * *
36633138 CCGAAGGCGTTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
36633184 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
78 37 0.34
79 48 0.44
80 24 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:36634378 original size:311 final size:311
Alignment explanation
Indices: 36633815--36634436 Score: 1244
Period size: 311 Copynumber: 2.0 Consensus size: 311
36633805 GTTAATCACT
36633815 ATCATAAATTGTGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAA
1 ATCATAAATTGTGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAA
36633880 GTTTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGT
66 GTTTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGT
36633945 AGGAATAGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAA
131 AGGAATAGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAA
36634010 AGTAACGAAACAATCATACGGACAGTATGTTAAGCGATATTCAGGTTCTTGTGAGACAGGTCCAG
196 AGTAACGAAACAATCATACGGACAGTATGTTAAGCGATATTCAGGTTCTTGTGAGACAGGTCCAG
36634075 AACGGTTTCTGGATTTCCTGTTCCGACTTTGGAAATTCATTTTAAATTAAC
261 AACGGTTTCTGGATTTCCTGTTCCGACTTTGGAAATTCATTTTAAATTAAC
36634126 ATCATAAATTGTGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAA
1 ATCATAAATTGTGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAA
36634191 GTTTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGT
66 GTTTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGT
36634256 AGGAATAGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAA
131 AGGAATAGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAA
36634321 AGTAACGAAACAATCATACGGACAGTATGTTAAGCGATATTCAGGTTCTTGTGAGACAGGTCCAG
196 AGTAACGAAACAATCATACGGACAGTATGTTAAGCGATATTCAGGTTCTTGTGAGACAGGTCCAG
36634386 AACGGTTTCTGGATTTCCTGTTCCGACTTTGGAAATTCATTTTAAATTAAC
261 AACGGTTTCTGGATTTCCTGTTCCGACTTTGGAAATTCATTTTAAATTAAC
36634437 CAGAGACAAT
Statistics
Matches: 311, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
311 311 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (311 bp):
ATCATAAATTGTGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAA
GTTTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGT
AGGAATAGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAA
AGTAACGAAACAATCATACGGACAGTATGTTAAGCGATATTCAGGTTCTTGTGAGACAGGTCCAG
AACGGTTTCTGGATTTCCTGTTCCGACTTTGGAAATTCATTTTAAATTAAC
Found at i:36635610 original size:88 final size:88
Alignment explanation
Indices: 36635461--36635639 Score: 322
Period size: 88 Copynumber: 2.0 Consensus size: 88
36635451 GTTAACAGTA
* *
36635461 ATACTAGAATGATTTTAATGTTACAAACAATGAGTGGCATCTAGAAATGCATCATTTCTACCTAA
1 ATACTAGAACGATTCTAATGTTACAAACAATGAGTGGCATCTAGAAATGCATCATTTCTACCTAA
36635526 GTTACAAGAAATCATGATTCGAC
66 GTTACAAGAAATCATGATTCGAC
*
36635549 ATACTAGAACGATTCTAATGTTACAAACAATGAGTGGCATCTAGAAATGCATCATTTCTACCTCA
1 ATACTAGAACGATTCTAATGTTACAAACAATGAGTGGCATCTAGAAATGCATCATTTCTACCTAA
*
36635614 GTTACAGGAAATCATGATTCGAC
66 GTTACAAGAAATCATGATTCGAC
36635637 ATA
1 ATA
36635640 ACCTTTTCGG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (88 bp):
ATACTAGAACGATTCTAATGTTACAAACAATGAGTGGCATCTAGAAATGCATCATTTCTACCTAA
GTTACAAGAAATCATGATTCGAC
Found at i:36644980 original size:50 final size:50
Alignment explanation
Indices: 36644861--36644985 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 50
36644851 TTATTGAGGT
* * * *
36644861 TATGAGAGGTCCCATGTAAGATCATGTTTGGGACATGGCGTTGGCACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
* * * ** *
36644911 GATGGGAGGCCCCCCGTAAGACCTTGTCTGGGACATGGCATGGGCACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
**
36644961 TATGAGAATTCCCATGTAAGACCAT
1 TATGAGAGGTCCCATGTAAGACCAT
36644986 ATCTAGGATA
Statistics
Matches: 57, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:36645284 original size:20 final size:20
Alignment explanation
Indices: 36645259--36645297 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36645249 TGAGTTATTT
36645259 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
36645279 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
36645298 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:36646836 original size:23 final size:23
Alignment explanation
Indices: 36646806--36646849 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
36646796 CTTCCACCTG
36646806 AAGTTAG-AGAGGCTCAAGAAAAT
1 AAGTTAGAAG-GGCTCAAGAAAAT
*
36646829 AAGTTAGAAGGGCTTAAGAAA
1 AAGTTAGAAGGGCTCAAGAAA
36646850 CAACAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.48, C:0.07, G:0.27, T:0.18
Consensus pattern (23 bp):
AAGTTAGAAGGGCTCAAGAAAAT
Found at i:36652285 original size:99 final size:101
Alignment explanation
Indices: 36652134--36652373 Score: 277
Period size: 99 Copynumber: 2.3 Consensus size: 101
36652124 TTTTCTGTAC
* * ** * * *
36652134 TGCCAAAGCCATATCCCAGATATGGTCTTACATAGGAGTTCTCATATCGGTGCCCATGCCATGTC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCATATAGGTGCCAACGCCATGTC
** *
36652199 CCAGACATGGTCTTATGGGGGACCTCTCAT-CTC-GG
65 CCAGACATGGTCTTACAGGGGACCTCTCATACTCAGA
* *
36652234 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATCTAGGTGCCAACGCCATGTCC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATATAGGTGCCAACGCCATGTCC
*
36652299 CAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
66 CAGACATGGTCTTACAGGGGACCTCTCAT-A-CTC-A-GA
* * *
36652339 TGCCAATGTCATGTCTCAGACATGGTCTTACATGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGG
36652374 GATCTCTTTA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 52 0.44
100 30 0.25
102 3 0.03
105 33 0.28
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (101 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATATAGGTGCCAACGCCATGTCC
CAGACATGGTCTTACAGGGGACCTCTCATACTCAGA
Found at i:36652344 original size:56 final size:51
Alignment explanation
Indices: 36652134--36652380 Score: 268
Period size: 50 Copynumber: 4.8 Consensus size: 51
36652124 TTTTCTGTAC
* * * * ** *
36652134 TGCCAAAGCCATATCCCAGATATGGTCTTACATAGGAGTTCTCATATC-GG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGG
* * ***
36652184 TGCCCATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTC-GG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGG
36652234 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCATCT-AGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGG
*
36652283 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CTC-A-GG
* * * *
36652339 TGCCAATGTCATGTCTCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36652381 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 48 0.29
50 78 0.46
53 2 0.01
55 1 0.01
56 39 0.23
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGG
Found at i:36655825 original size:18 final size:18
Alignment explanation
Indices: 36655794--36655844 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
36655784 AACCAAAAGA
*
36655794 GAGTAGAAGCAGCAGTAG
1 GAGTAGAAGTAGCAGTAG
* *
36655812 GAGTAGGAGTAGCAATAG
1 GAGTAGAAGTAGCAGTAG
* *
36655830 TAGTAGCAGTAGCAG
1 GAGTAGAAGTAGCAG
36655845 CGGTAGTAGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.37, C:0.10, G:0.37, T:0.16
Consensus pattern (18 bp):
GAGTAGAAGTAGCAGTAG
Found at i:36655840 original size:6 final size:6
Alignment explanation
Indices: 36655804--36656018 Score: 136
Period size: 6 Copynumber: 36.8 Consensus size: 6
36655794 GAGTAGAAGC
* * * * * * *
36655804 AGCAGT AGGAGT AGGAGT AGCAAT AGTAGT AGCAGT AGCAGC GGTAGT
1 AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT
* * * * * * * * *
36655852 AGCAAT AGTAGT AACCGT AGTAGT AGCAAT AGCAGT AGTAGT CGTAGT
1 AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT
** * * *
36655900 AGCAGT AATAGT CGTAGT AGCAGT AGCA-- A-CAGT AGCAGT AGCCGT
1 AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT
* * * * * *
36655945 AGTAGC AGTAGT AGCAGT AGCA-- A-CAGT AGCAGT AGCCGT AGTAGC
1 AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT AGCAGT
*
36655990 AGCAGT AGCAGT AGCAGT AGTAGT AGCAG
1 AGCAGT AGCAGT AGCAGT AGCAGT AGCAG
36656019 CAGTAGTAGT
Statistics
Matches: 155, Mismatches: 48, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
3 4 0.03
4 2 0.01
5 2 0.01
6 147 0.95
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (6 bp):
AGCAGT
Found at i:36655888 original size:15 final size:15
Alignment explanation
Indices: 36655870--36656029 Score: 122
Period size: 15 Copynumber: 10.3 Consensus size: 15
36655860 TAGTAACCGT
*
36655870 AGTAGTAGCAATAGC
1 AGTAGTAGCAGTAGC
36655885 AGTAGTAGTCGTAGTAGC
1 AGTAGTAG-C--AGTAGC
*
36655903 AGTAATAGTCGTAGTAGC
1 AGTAGTAG-C--AGTAGC
* *
36655921 AGTAGCAACAGTAGC
1 AGTAGTAGCAGTAGC
** *
36655936 AGTAGCCGTAGTAGC
1 AGTAGTAGCAGTAGC
36655951 AGTAGTAGCAGTAGC
1 AGTAGTAGCAGTAGC
**
36655966 AACAGTAGCAGTAGC
1 AGTAGTAGCAGTAGC
* * *
36655981 CGTAGTAGCAGCAGT
1 AGTAGTAGCAGTAGC
* *
36655996 AGCAGTAGCAGTAGT
1 AGTAGTAGCAGTAGC
* *
36656011 AGTAGCAGCAGTAGT
1 AGTAGTAGCAGTAGC
36656026 AGTA
1 AGTA
36656030 CGAAGCCTGG
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
15 90 0.76
16 1 0.01
17 1 0.01
18 27 0.23
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (15 bp):
AGTAGTAGCAGTAGC
Found at i:36655890 original size:39 final size:39
Alignment explanation
Indices: 36655813--36656029 Score: 170
Period size: 39 Copynumber: 5.6 Consensus size: 39
36655803 CAGCAGTAGG
* ** * *
36655813 AGTAGGAGTAGCAATAGTAGTAGCAGTAGCAGCGGTAGTAGC
1 AGTAGCAGTAGCCGTAGTAGTAGCAGTAGCA---GTAGCAAC
* * * * *
36655855 AATAGTAGTAACCGTAGTAGTAGCAATAGCAGTAG---T
1 AGTAGCAGTAGCCGTAGTAGTAGCAGTAGCAGTAGCAAC
* * * * * *
36655891 AGTCGTAGTAGCAGTAATAGTCGTAGTAGCAGTAGCAAC
1 AGTAGCAGTAGCCGTAGTAGTAGCAGTAGCAGTAGCAAC
* *
36655930 AGTAGCAGTAGCCGTAGTAGCAGTAGTAGCAGTAGCAAC
1 AGTAGCAGTAGCCGTAGTAGTAGCAGTAGCAGTAGCAAC
* **
36655969 AGTAGCAGTAGCCGTAGTAGCAGCAGTAGCAGTAGCAGT
1 AGTAGCAGTAGCCGTAGTAGTAGCAGTAGCAGTAGCAAC
* * *
36656008 AGTAGTAGCAGCAGTAGTAGTA
1 AGTAGCAGTAGCCGTAGTAGTA
36656030 CGAAGCCTGG
Statistics
Matches: 143, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
36 27 0.19
39 91 0.64
42 25 0.17
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (39 bp):
AGTAGCAGTAGCCGTAGTAGTAGCAGTAGCAGTAGCAAC
Found at i:36658158 original size:39 final size:39
Alignment explanation
Indices: 36658094--36658206 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
36658084 TGCAAATCAG
* *
36658094 GGGTACCGAAGTACTACA-GGACACGTATGTGCATTCAA
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAA
*
36658132 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAG
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAA
*
36658171 GGGTACCGAAGTACAATAGGGGCACGTATGTGCATT
1 GGGTACCGAAGTACAACAGGGGCACGTATGTGCATT
36658207 TAGGTATAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
38 17 0.24
39 53 0.76
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.20
Consensus pattern (39 bp):
GGGTACCGAAGTACAACAGGGGCACGTATGTGCATTCAA
Found at i:36658173 original size:20 final size:20
Alignment explanation
Indices: 36658148--36658206 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
36658138 CGAAGTACAA
36658148 CAGGGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
* * * *
36658168 CAGGGGTACCG-AAGTACAAT
1 CAGGGGCA-CGTATGTGCATT
36658188 -AGGGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
36658207 TAGGTATAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
18 2 0.07
19 12 0.41
20 13 0.45
21 2 0.07
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCATT
Found at i:36662323 original size:42 final size:42
Alignment explanation
Indices: 36662162--36662386 Score: 150
Period size: 43 Copynumber: 5.3 Consensus size: 42
36662152 AAAAGTGAAA
* * * *
36662162 CAATCATACTGACACATA-AGTGTATCATCGGATGAACCGACAG
1 CAAT-ATACTGGCACACACAGTGCATCATCGGATAAACCGA-AG
* * * * *
36662205 -AATTATACTGGAAGATA-AGTGCATCATTGGGTAAAACCGAAG
1 CAA-TATACTGGCACACACAGTGCATCATCGGAT-AAACCGAAG
* * * * * *
36662247 CAACTATACTGACAGACAAAGTGCATTATGGGATAAATCGAAG
1 CAA-TATACTGGCACACACAGTGCATCATCGGATAAACCGAAG
* *
36662290 CAATATACTGGCACACACAGAGCATCATCGGATAAACCAAAGG
1 CAATATACTGGCACACACAGTGCATCATCGGATAAACCGAA-G
* * * * * *
36662333 AAATATACTAGCACATACAGTGCATCATTGGGTAAACCAAAGG
1 CAATATACTGGCACACACAGTGCATCATCGGATAAACCGAA-G
*
36662376 AAATATACTGG
1 CAATATACTGG
36662387 GACATTGGAA
Statistics
Matches: 147, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
42 56 0.38
43 79 0.54
44 12 0.08
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (42 bp):
CAATATACTGGCACACACAGTGCATCATCGGATAAACCGAAG
Found at i:36667859 original size:27 final size:27
Alignment explanation
Indices: 36667821--36668082 Score: 303
Period size: 27 Copynumber: 9.7 Consensus size: 27
36667811 ATTCATGGGC
36667821 AAATGA-TCGAAATACCCTCGAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
* * *
36667848 AAATGACTGAAATCCCCTCGAAAGATA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
36667875 AAATGACTGAAATACCCTCAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
36667902 AAATGA-TCGAAATACCCTCGAAGGATA
1 AAATGACT-GAAATACCCTCGAAGGGTA
*
36667929 AAATAACTGAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* **
36667956 AAATGATTGAAATACCCTTAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* ** * ** *
36667983 AAATAACCAAAAAACCCTAAAAAGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
36668010 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* * * *
36668037 AAATGATTGAAATACCCCCCAAAGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
36668064 AAATGACTGAAATACCCTC
1 AAATGACTGAAATACCCTC
36668083 ATCTGTTATA
Statistics
Matches: 197, Mismatches: 35, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 194 0.98
28 2 0.01
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.18
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGAAGGGTA
Found at i:36667958 original size:81 final size:80
Alignment explanation
Indices: 36667821--36668082 Score: 339
Period size: 81 Copynumber: 3.2 Consensus size: 80
36667811 ATTCATGGGC
* * * *
36667821 AAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATCCCCTCGAAAGATAAAATGACTGAA
1 AAATGATCGAAATACCCTCGAA-GGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGATTGAA
36667886 ATACCCTCAAAGGGTA
65 ATACCCTCAAAGGGTA
*
36667902 AAATGATCGAAATACCCTCGAAGGATAAAATAACTGAAATACCCTCGAAGGGTAAAATGATTGAA
1 AAATGATCGAAATACCCTCGAAGG-TAAAATGACTGAAATACCCTCGAAGGGTAAAATGATTGAA
*
36667967 ATACCCTTAAAGGGTA
65 ATACCCTCAAAGGGTA
* * * * ** *
36667983 AAATAACCAAAAAACCCTAAAAAGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGATTGAA
1 AAATGATCGAAATACCCT-CGAAGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGATTGAA
*
36668048 ATACCCCCCAAA-GGTA
65 ATA-CCCTCAAAGGGTA
36668064 AAATGA-CTGAAATACCCTC
1 AAATGATC-GAAATACCCTC
36668083 ATCTGTTATA
Statistics
Matches: 157, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.02
81 144 0.92
82 10 0.06
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.18
Consensus pattern (80 bp):
AAATGATCGAAATACCCTCGAAGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGATTGAAA
TACCCTCAAAGGGTA
Found at i:36668519 original size:28 final size:28
Alignment explanation
Indices: 36668479--36668541 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
36668469 TATTACACTA
36668479 TTACTGCTTAGGGCTAAGGCCTAGACTG
1 TTACTGCTTAGGGCTAAGGCCTAGACTG
*
36668507 TTACTGCTTAGGGCTCAGGCCTAGACTG
1 TTACTGCTTAGGGCTAAGGCCTAGACTG
36668535 TTACTGC
1 TTACTGC
36668542 ATGTCGTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.24, G:0.27, T:0.30
Consensus pattern (28 bp):
TTACTGCTTAGGGCTAAGGCCTAGACTG
Found at i:36671418 original size:28 final size:27
Alignment explanation
Indices: 36671378--36671431 Score: 99
Period size: 28 Copynumber: 2.0 Consensus size: 27
36671368 AAGGATATAA
36671378 GACACCCTATAGGTTAGTCTTTAGGGAT
1 GACACCCTATAGGTTAGTCTTT-GGGAT
36671406 GACACCCTATAGGTTAGTCTTTGGGA
1 GACACCCTATAGGTTAGTCTTTGGGA
36671432 AAGCCTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (27 bp):
GACACCCTATAGGTTAGTCTTTGGGAT
Found at i:36673220 original size:19 final size:17
Alignment explanation
Indices: 36673196--36673236 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
36673186 CATGGGGTAT
36673196 AAATTAAGAATAAAAAACA
1 AAATTAA-AATAAAAAA-A
*
36673215 AAATTAAAATAATAAAA
1 AAATTAAAATAAAAAAA
36673232 AAATT
1 AAATT
36673237 TGGAAGGACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 8 0.38
19 7 0.33
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATTAAAATAAAAAAA
Found at i:36674742 original size:44 final size:45
Alignment explanation
Indices: 36674694--36674805 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 45
36674684 GATTCATCGT
* *
36674694 TTTAATCCGCTCCACTGCAACTTCAAGGAGATATGATTTG-TAGC
1 TTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTAGC
** * * * *
36674738 TTTAATCTATTCCATTGCAACTTTAGGGAGATAAGATTTGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTAGC
* * *
36674783 TTTAGTCTGCTTCACTACAACTT
1 TTTAATCTGCTCCACTGCAACTT
36674806 TAGGGATAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
44 33 0.62
45 20 0.38
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (45 bp):
TTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTAGC
Found at i:36674886 original size:51 final size:51
Alignment explanation
Indices: 36674831--36674930 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
36674821 TGCTTCCAGC
*
36674831 TTTAATATGTTCCACTGCAATGCCAGGGAAATAAGATTCGCTGCCTTCAAT
1 TTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAAT
* * * *
36674882 TTTAATCTGTTCCACTGCAACGCCAGGGAAGTAAGATTCGTTGTCTTCA
1 TTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCA
36674931 GTTTGCTTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (51 bp):
TTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAAT
Found at i:36675161 original size:43 final size:43
Alignment explanation
Indices: 36675100--36675185 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
36675090 TCACCAGGGA
*
36675100 AAAAAGATTAACGGCCTTCAGCTTTAATCTGTTCCACTGCAAC
1 AAAAAGATTAACGGCCTTCAGCTTTAATCTATTCCACTGCAAC
* *
36675143 AAAAAGATTTACTGCCTTCAGCTTTAATCTATTCCACTGCAAC
1 AAAAAGATTAACGGCCTTCAGCTTTAATCTATTCCACTGCAAC
36675186 GCTAAGGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.30
Consensus pattern (43 bp):
AAAAAGATTAACGGCCTTCAGCTTTAATCTATTCCACTGCAAC
Found at i:36675230 original size:51 final size:51
Alignment explanation
Indices: 36675154--36675804 Score: 582
Period size: 51 Copynumber: 13.0 Consensus size: 51
36675144 AAAAGATTTA
* * *
36675154 CTGCCTTCAGCTTTAATCTATTCCACTGCAACGCTAAGGAAATAAGGTTTG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* * * * * *
36675205 CTGCCTTCAACTTTAATCTGTTCCACTACAATGCCAGGGAAATAAGATTCA
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* * * *** * *
36675256 TTGCCTTCAACTTTAATCTGTTCCACTACAACGCCCGGGAAAAAAGATTCA
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* *
36675307 CTGCCTTCAGCTTTAATCTG-----CTGCAACGCCAGGGAAATAAGATTCG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* * * ** * *
36675353 CCGCCTTCAACTTTAATCTGTTCCACTACAATACTAAGGAAATAAAATTTG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* * * *
36675404 CTGCCTTTAGCTTTACTCTGTTCCACTGCAACG-TCAGGGAAATAAGATTCA
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCT-AAGGAAATAAGATTCG
* ** * *
36675455 CTACCTTCAGCTTTAATCTGTTCCACTGCAACAGCCGA-GAAAAAAGATTCA
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAAC-GCTAAGGAAATAAGATTCG
* * * *
36675506 CTGCCTT-ATGCTTTGATC---T--ACTACAACGC-CAGGCAAATAAGTTTCG
1 CTGCCTTCA-GCTTTAATCTGTTCCACTGCAACGCTAAGG-AAATAAGATTCG
* *
36675552 TTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTTG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* * * * *
36675603 CTACCTTCAGCTTTAATTTGTTCCACTGTAATGC-CAGAGAAATAAGATT-G
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAG-GAAATAAGATTCG
* * * * * *
36675653 CTACCTTCAGCTTTAATCTATTCCACTGCAAC-ATCAGGGCAATAAGATTTG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCT-AAGGAAATAAGATTCG
* * * *
36675704 CTGCCTTCAGCTTCAATCTGTTCCACTGCAACGCCAGGGAAATGAGATTCG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
* * *
36675755 TTGCCTTCAGCTTTAATCTGCTCCACTGCAACGCTCGAGGAAA-AAGATTC
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCT-AAGGAAATAAGATTC
36675805 ACTATTTTGA
Statistics
Matches: 488, Mismatches: 88, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
44 1 0.00
45 3 0.01
46 70 0.14
47 1 0.00
48 1 0.00
49 1 0.00
50 43 0.09
51 359 0.74
52 9 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (51 bp):
CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCG
Found at i:36675375 original size:148 final size:148
Alignment explanation
Indices: 36675091--36675776 Score: 596
Period size: 148 Copynumber: 4.6 Consensus size: 148
36675081 TCTACTGTAT
* ** *
36675091 CACCAGGGAAAAAAGATTAACGGCCTTCAGCTTTAATCTGTTCCACTGCAA---C----AAA-AA
1 CACCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAA
* * * * *
36675148 GATTTACTGCCTTCAGCTTTAATCTATTCCACTGCAACGCTA-AGGAAATAAGGTTTGCTGCCTT
66 GATTCACTGCCTTCAGCTTTAATC---T--GCTGCAACGCCAGA-GAAATAAGATTCGCTGCCTT
36675212 CAACTTTAATCTGTTCCACTACAA
125 CAACTTTAATCTGTTCCACTACAA
** ** * * * *
36675236 TGCCAGGGAAATAAGATTCATTGCCTTCAACTTTAATCTGTTCCACTACAACGCCCGGGAAAAAA
1 CACCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAA
* *
36675301 GATTCACTGCCTTCAGCTTTAATCTGCTGCAACGCCAGGGAAATAAGATTCGCCGCCTTCAACTT
66 GATTCACTGCCTTCAGCTTTAATCTGCTGCAACGCCAGAGAAATAAGATTCGCTGCCTTCAACTT
36675366 TAATCTGTTCCACTACAA
131 TAATCTGTTCCACTACAA
* * * * * * * *
36675384 TACTAAGGAAATAAAATTTGCTGCCTTTAGCTTTACTCTGTTCCACTGCAACGTCAGGGAAATAA
1 CACCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAA
* * *
36675449 GATTCACTACCTTCAGCTTTAATCTGTTCCACTGCAACAGCC-GAGAAAAAAGATTCACTGCCTT
66 GATTCACTGCCTTCAGCTTTAATCTG-----CTGCAAC-GCCAGAGAAATAAGATTCGCTGCCTT
* *
36675513 -ATGCTTTGATC---T--ACTACAA
125 CA-ACTTTAATCTGTTCCACTACAA
* * * * * *
36675532 CGCCAGGCAAATAAGTTTCGTTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAA
1 CACCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAA
** * * * * *
36675597 GATTTGCTACCTTCAGCTTTAATTTGTTCCACTGTAATGCCAGAGAAATAAGATT-GCTACCTTC
66 GATTCACTGCCTTCAGCTTTAATCTG-----CTGCAACGCCAGAGAAATAAGATTCGCTGCCTTC
* * *
36675661 AGCTTTAATCTATTCCACTGCAA
126 AACTTTAATCTGTTCCACTACAA
* * * * *
36675684 CATCAGGGCAATAAGATTTGCTGCCTTCAGCTTCAATCTGTTCCACTGCAACGCCAGGGAAATGA
1 CACCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAA
**
36675749 GATTCGTTGCCTTCAGCTTTAATCTGCT
66 GATTCACTGCCTTCAGCTTTAATCTGCT
36675777 CCACTGCAAC
Statistics
Matches: 443, Mismatches: 75, Indels: 44
0.79 0.13 0.08
Matches are distributed among these distances:
145 43 0.10
147 19 0.04
148 232 0.52
150 3 0.01
152 86 0.19
153 57 0.13
154 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (148 bp):
CACCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAA
GATTCACTGCCTTCAGCTTTAATCTGCTGCAACGCCAGAGAAATAAGATTCGCTGCCTTCAACTT
TAATCTGTTCCACTACAA
Found at i:36675426 original size:199 final size:197
Alignment explanation
Indices: 36675022--36675803 Score: 825
Period size: 199 Copynumber: 3.9 Consensus size: 197
36675012 CATAATTTGT
* * * *
36675022 AGCTTTAATCTGTTCCACTGCAACAG-CAGGGAAATAAGATTCGCTGCCTTTAGCTTTAATC---
1 AGCTTTAATCTGTTCCACTGCAA-TGCCAGGGAAATAAGATTC-ATACCTTCAGCTTTAATCTGT
* * * * * * * *
36675083 T--ACTGTATCACCAGGGAAAAAAGATTAACGGCCTTCAGCTTTAATCTG-TTCCACTG-CA-AC
64 TCCACTGCAACGCC-GGGAAAAAAGATTCACTGCCTTCAGCTTTAATCTGCTGCAAC-GCCAGGC
** * *
36675143 AAA-AAGATTTACTGCCTTCAGCTTTAATCTATTCCACTGCAACGCTAAGGAAATAAGGTTTGCT
127 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTTGCT
36675207 GCCTTC
192 GCCTTC
* * * *
36675213 AACTTTAATCTGTTCCACTACAATGCCAGGGAAATAAGATTCATTGCCTTCAACTTTAATCTGTT
1 AGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCA-TACCTTCAGCTTTAATCTGTT
* *
36675278 CCACTACAACGCCCGGGAAAAAAGATTCACTGCCTTCAGCTTTAATCTGCTGCAACGCCAGGGAA
65 CCACTGCAACG-CCGGGAAAAAAGATTCACTGCCTTCAGCTTTAATCTGCTGCAACGCCAGGCAA
* * * ** *
36675343 ATAAGATTCGCCGCCTTCAACTTTAATCTGTTCCACTACAATACTAAGGAAATAAAATTTGCTGC
129 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTTGCTGC
*
36675408 CTTT
194 CTTC
* * *
36675412 AGCTTTACTCTGTTCCACTGCAACGTCAGGGAAATAAGATTCACTACCTTCAGCTTTAATCTGTT
1 AGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCA-TACCTTCAGCTTTAATCTGTT
* * * *
36675477 CCACTGCAACAGCCGAGAAAAAAGATTCACTGCCTT-ATGCTTTGATCTACTACAACGCCAGGCA
65 CCACTGCAAC-GCCGGGAAAAAAGATTCACTGCCTTCA-GCTTTAATCTGCTGCAACGCCAGGCA
* * *
36675541 AATAAGTTTCGTTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTTGCTA
128 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTTGCTG
36675606 CCTTC
193 CCTTC
* * * *
36675611 AGCTTTAATTTGTTCCACTGTAATGCCAGAGAAATAAGATTGC-TACCTTCAGCTTTAATCTATT
1 AGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATT-CATACCTTCAGCTTTAATCTGTT
* * * * ** *
36675675 CCACTGCAACATCAGGGCAATAAGATTTGCTGCCTTCAGCTTCAATCTGTTCCACTGCAACGCCA
65 CCACTGCAAC-GCCGGGAAAAAAGATTCACTGCCTTCAGCTTTAATCTG-----CTGCAACGCCA
* * * * *
36675740 GGGAAATGAGATTCGTTGCCTTCAGCTTTAATCTGCTCCACTGCAACGCTCGAGGAAA-AAGATT
124 GGCAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCT-AAGGAAATAAGATT
36675804 CACTATTTTG
Statistics
Matches: 495, Mismatches: 74, Indels: 32
0.82 0.12 0.05
Matches are distributed among these distances:
190 1 0.00
191 52 0.11
194 1 0.00
196 39 0.08
197 8 0.02
198 61 0.12
199 263 0.53
200 2 0.00
203 62 0.13
204 6 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (197 bp):
AGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCATACCTTCAGCTTTAATCTGTTC
CACTGCAACGCCGGGAAAAAAGATTCACTGCCTTCAGCTTTAATCTGCTGCAACGCCAGGCAAAT
AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTTGCTGCCT
TC
Found at i:36675680 original size:101 final size:103
Alignment explanation
Indices: 36675529--36675803 Score: 344
Period size: 101 Copynumber: 2.7 Consensus size: 103
36675519 TGATCTACTA
* * *
36675529 CAACGCCAG-GCAAATAAGTTTCGTTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCT-AAGGA
1 CAACGCCAGAG-AAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCTCAAGGA
* *
36675592 AATAAGATTTGCTACCTTCAGCTTTAATTTGTTCCACTG
65 AATAAGATTTGCTACCTTCAGCTTCAATCTGTTCCACTG
* * * * * *
36675631 TAATGCCAGAGAAATAAGATT-GCTACCTTCAGCTTTAATCTATTCCACTGCAAC-ATCAGGGCA
1 CAACGCCAGAGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCTCAAGGAA
*
36675694 ATAAGATTTGCTGCCTTCAGCTTCAATCTGTTCCACTG
66 ATAAGATTTGCTACCTTCAGCTTCAATCTGTTCCACTG
* * * * * *
36675732 CAACGCCAGGGAAATGAGATTCGTTGCCTTCAGCTTTAATCTGCTCCACTGCAACGCTCGAGGAA
1 CAACGCCAGAGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCTCAAGGAA
36675797 A-AAGATT
66 ATAAGATT
36675804 CACTATTTTG
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
100 1 0.01
101 86 0.59
102 51 0.35
103 7 0.05
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (103 bp):
CAACGCCAGAGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCTCAAGGAA
ATAAGATTTGCTACCTTCAGCTTCAATCTGTTCCACTG
Found at i:36675831 original size:152 final size:150
Alignment explanation
Indices: 36675239--36675841 Score: 450
Period size: 148 Copynumber: 4.0 Consensus size: 150
36675229 ACTACAATGC
*** * * * *
36675239 CAGGG-AAATAAGATTCATTGCCTTCAACTTTAATCTGTTCCACTACAACGCCCGGGAAAAAAGA
1 CAGGGCAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGA
* * * *** **
36675303 TTCACTGCCTTCAGCTTTAATCTG-----CTGCAACGCC-AGGGAAATAAGATTCGCCGCCTTCA
66 TTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCGA-GGAAA-AAGATTC-ACTATTTTG
** * *
36675362 ACTTTAATCTGTTCCACTACAATA-
128 AC-TTAATC-CATCCACTGCAACAT
* * * * *
36675386 CTAAGG-AAATAAAATTTGCTGCCTTTAGCTTTACTCTGTTCCACTGCAACGTCAGGGAAATAAG
1 C-AGGGCAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAG
* * * *
36675450 ATTCACTACCTTCAGCTTTAATCTGTTCCACTGCAACAGCCGAGAAAAAAGATTCACTGCCTTAT
65 ATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAAC-GCCGAGGAAAAAGATTCACT--ATTTT
* * * **
36675515 G-CTT--T-GATCTACTACAACGC
127 GACTTAATCCATCCACTGCAACAT
* * *
36675535 CA-GGCAAATAAG-TTTCGTTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAG
1 CAGGGCAAATAAGATTT-GCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAG
* * * * * ** *
36675598 ATTTGCTACCTTCAGCTTTAATTTGTTCCACTGTAATGCC-AGAGAAATAAGATT-GCTACCTTC
65 ATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCGAG-GAAA-AAGATTCACTATTTTG
*
36675661 AGCTTTAATCTATTCCACTGCAACAT
128 A-C-TTAATCCA-TCCACTGCAACAT
* *
36675687 CAGGGC-AATAAGATTTGCTGCCTTCAGCTTCAATCTGTTCCACTGCAACGCCAGGGAAATGAGA
1 CAGGGCAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGA
* * *
36675751 TTCGTTGCCTTCAGCTTTAATCTGCTCCACTGCAACGCTCGAGGAAAAAGATTCACTATTTTGAC
66 TTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGC-CGAGGAAAAAGATTCACTATTTTGAC
* *
36675816 TTCAATCCATCCCACTGTAACTT
130 TT-AATCCAT-CCACTGCAACAT
36675839 CAG
1 CAG
36675842 TGGTACAGGA
Statistics
Matches: 360, Mismatches: 67, Indels: 53
0.75 0.14 0.11
Matches are distributed among these distances:
145 1 0.00
146 2 0.01
147 15 0.04
148 172 0.48
149 1 0.00
150 2 0.01
151 4 0.01
152 119 0.33
153 32 0.09
154 11 0.03
155 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (150 bp):
CAGGGCAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGA
TTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCGAGGAAAAAGATTCACTATTTTGACT
TAATCCATCCACTGCAACAT
Found at i:36677013 original size:46 final size:47
Alignment explanation
Indices: 36676920--36677037 Score: 166
Period size: 46 Copynumber: 2.5 Consensus size: 47
36676910 CCTCATTTTA
*
36676920 CGGGTTTTCACCTTGGCCTCTCCTTTCTTTAGGACTCAAGACGCCCTTTG
1 CGGGTTTTCACCTTGG--TCT-CTTTCTTTAGGACTCAAGACACCCTTTG
*
36676970 CGGGTTTTCACCTTGGTCT-TTTTTTTAGGACTCAAGACACCCTTTG
1 CGGGTTTTCACCTTGGTCTCTTTCTTTAGGACTCAAGACACCCTTTG
**
36677016 CAAGTTTTCACCTTGGTCTCTT
1 CGGGTTTTCACCTTGGTCTCTT
36677038 CTCCTTCTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
46 42 0.67
47 2 0.03
48 3 0.05
50 16 0.25
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.40
Consensus pattern (47 bp):
CGGGTTTTCACCTTGGTCTCTTTCTTTAGGACTCAAGACACCCTTTG
Found at i:36679497 original size:15 final size:15
Alignment explanation
Indices: 36679473--36679507 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
36679463 CTCAAGGCGC
*
36679473 TCTTTTTTTTCCTTT
1 TCTTTCTTTTCCTTT
*
36679488 TCTTTCTTTTTCTTT
1 TCTTTCTTTTCCTTT
36679503 TCTTT
1 TCTTT
36679508 TTCATAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TCTTTCTTTTCCTTT
Found at i:36682064 original size:19 final size:19
Alignment explanation
Indices: 36682022--36682064 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
36682012 TGGTGACCTT
* *
36682022 TAATGCATATGATGTAATG
1 TAATGCAAATGATGAAATG
36682041 TAATGCAAATGCATGAAATG
1 TAATGCAAATG-ATGAAATG
36682061 -AATG
1 TAATG
36682065 TAAAAAGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (19 bp):
TAATGCAAATGATGAAATG
Found at i:36684493 original size:3 final size:3
Alignment explanation
Indices: 36684473--36684539 Score: 59
Period size: 3 Copynumber: 22.7 Consensus size: 3
36684463 ATAACCAAAT
* * *
36684473 ATA AGA ATA AT- ATCA ATA ATA ATA AGA GTA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
*
36684519 ATA A-A ATA ATA TTA A-A ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
36684540 TAATTTAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
2 6 0.12
3 40 0.78
4 5 0.10
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:36684497 original size:21 final size:21
Alignment explanation
Indices: 36684473--36684539 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 21
36684463 ATAACCAAAT
*
36684473 ATAAGAATAATATCAATAATA
1 ATAAGAATAATATAAATAATA
36684494 ATAAGAGTAATAATAATAAATAATA
1 AT-A-AG-AATAAT-ATAAATAATA
*
36684519 ATAA-AATAATATTAA-AATA
1 ATAAGAATAATATAAATAATA
36684538 AT
1 AT
36684540 TAATTTAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 6 0.15
20 4 0.10
21 8 0.20
22 1 0.03
23 3 0.08
24 7 0.17
25 11 0.28
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (21 bp):
ATAAGAATAATATAAATAATA
Found at i:36684517 original size:10 final size:11
Alignment explanation
Indices: 36684487--36684539 Score: 61
Period size: 11 Copynumber: 4.5 Consensus size: 11
36684477 GAATAATATC
36684487 AATAATAATAA
1 AATAATAATAA
*
36684498 GAGTAATAATAATA
1 -AATAATAAT-A-A
36684512 AATAATAATAA
1 AATAATAATAA
*
36684523 AATAATATTAA
1 AATAATAATAA
36684534 AATAAT
1 AATAAT
36684540 TAATTTAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 17 0.47
12 9 0.25
13 9 0.25
14 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (11 bp):
AATAATAATAA
Found at i:36697767 original size:27 final size:27
Alignment explanation
Indices: 36697694--36697753 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
36697684 CAAAAGATTA
*
36697694 AATCATAACATCATTCATAGAAAAATC
1 AATCAAAACATCATTCATAGAAAAATC
36697721 AATCAAAACATCATTCATAGAAAAATC
1 AATCAAAACATCATTCATAGAAAAATC
36697748 AATCAA
1 AATCAA
36697754 TCTCATACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.23
Consensus pattern (27 bp):
AATCAAAACATCATTCATAGAAAAATC
Found at i:36701498 original size:8 final size:9
Alignment explanation
Indices: 36701480--36701514 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
36701470 AAACTCTGTA
36701480 AATATTTTT
1 AATATTTTT
36701489 AATA-TTTT
1 AATATTTTT
36701497 AATATTTTT
1 AATATTTTT
36701506 ACATATTTT
1 A-ATATTTT
36701515 ACGGCTCGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 9 0.38
10 7 0.29
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:36701502 original size:17 final size:18
Alignment explanation
Indices: 36701480--36701515 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
36701470 AAACTCTGTA
36701480 AATATTTTTA-ATATTTT
1 AATATTTTTACATATTTT
36701497 AATATTTTTACATATTTT
1 AATATTTTTACATATTTT
36701515 A
1 A
36701516 CGGCTCGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
AATATTTTTACATATTTT
Found at i:36705627 original size:18 final size:17
Alignment explanation
Indices: 36705597--36705630 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36705587 TTTTTTATTC
36705597 TTTTCTCTCTTTCAATT
1 TTTTCTCTCTTTCAATT
*
36705614 TTTTCCTCTTTTTCAAT
1 TTTT-CTCTCTTTCAAT
36705631 ATCTTTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTCTCTCTTTCAATT
Found at i:36720398 original size:15 final size:15
Alignment explanation
Indices: 36720378--36720408 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36720368 AAGCTTGGTA
36720378 CGAAATTAATTAATT
1 CGAAATTAATTAATT
*
36720393 CGAAATTAATTTATT
1 CGAAATTAATTAATT
36720408 C
1 C
36720409 CACTACATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (15 bp):
CGAAATTAATTAATT
Found at i:36723694 original size:17 final size:17
Alignment explanation
Indices: 36723672--36723704 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36723662 GTTAGTGCAC
*
36723672 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
36723689 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
36723705 AATGTTACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:36730058 original size:50 final size:49
Alignment explanation
Indices: 36730001--36730189 Score: 198
Period size: 51 Copynumber: 3.8 Consensus size: 49
36729991 GATGGTCATG
*
36730001 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATGATAGGTCACA
* * * * * *
36730051 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTTTGGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT-GATAGG-TCACA
* * * *
36730102 TGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGGTAATTGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGAT-A-GGTCACA
* * * *
36730153 TGTGCAGTGCTATGTGCAGGCTACTATGTGAACCGAA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
36730190 CATCATTGAT
Statistics
Matches: 113, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 3 0.03
50 38 0.34
51 71 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAGGTCACA
Done.