Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 122 of 218
Found at i:36730078 original size:101 final size:100
Alignment explanation
Indices: 36729962--36730181 Score: 239
Period size: 101 Copynumber: 2.2 Consensus size: 100
36729952 TCATGGATTG
* * *
36729962 TGTGTAGGCCACTATGTAAAAGTGAAAGTGATGG-TCATGTGTGTAGTACTATGTGCAGGCTACT
1 TGTGCAGGCTACTATGT-AAAG-GAAAGT-ATGGATCACGTGTGTAGTACTATGTGCAGGCTACT
* *
36730026 ACGTGTACCAGAATGAT-A-GGTCGCATGTGTAGTACTA
63 ACGTGTACC-GAATGATAATGGTCACATGTGCAGTACTA
** * * *
36730063 TGTGCAGGCTACTATGCGTACCGGATAGTTTGGATCACGTGTGTAGTACTATGTGTAGGCTACTA
1 TGTGCAGGCTACTAT--GTAAAGGAAAGTATGGATCACGTGTGTAGTACTATGTGCAGGCTACTA
* * * *
36730128 CGTGTATCGAATGGTAATTGTCACATGTGCAGTGCTA
64 CGTGTACCGAATGATAATGGTCACATGTGCAGTACTA
36730165 TGTGCAGGCTACTATGT
1 TGTGCAGGCTACTATGT
36730182 GAACCGAACA
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
100 11 0.11
101 55 0.55
102 32 0.32
103 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (100 bp):
TGTGCAGGCTACTATGTAAAGGAAAGTATGGATCACGTGTGTAGTACTATGTGCAGGCTACTACG
TGTACCGAATGATAATGGTCACATGTGCAGTACTA
Found at i:36737960 original size:64 final size:64
Alignment explanation
Indices: 36737833--36737961 Score: 161
Period size: 64 Copynumber: 2.0 Consensus size: 64
36737823 ACAGCATTCT
* * * * * *
36737833 GATCAGTATTGATCCTGCATGTGTTGCGGATATACCGTAGCTCTTTGTGAGCATCTTGTTATAG
1 GATCAGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCATCCTGATATAG
* * *
36737897 GATCGGTATTGATCCTGCATAG-ATTGTGGACATACCGCAGCTCTTTATGAGCGTCCTGATATAG
1 GATCAGTATTGATCCTGCAT-GTATTGCGGACATACCGCAGCTCTTTATGAGCATCCTGATATAG
36737961 G
1 G
36737962 CTCTTTGAGA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 54 0.98
65 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (64 bp):
GATCAGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCATCCTGATATAG
Found at i:36737973 original size:25 final size:25
Alignment explanation
Indices: 36737936--36737983 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
36737926 ACATACCGCA
36737936 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTGATATAG
*
36737961 GCTCTTTGA-GAGCTTCCTGATAT
1 GCTCTTT-ATGAGCGTCCTGATAT
36737984 GACTCGCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.38
Consensus pattern (25 bp):
GCTCTTTATGAGCGTCCTGATATAG
Found at i:36738923 original size:17 final size:16
Alignment explanation
Indices: 36738895--36738947 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
36738885 TTTGGTTCGC
36738895 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36738911 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
36738928 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36738944 TGTA
1 TGTA
36738948 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36739012 original size:44 final size:45
Alignment explanation
Indices: 36738928--36739018 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
36738918 GGATTAGAGG
* * *
36738928 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
36738973 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
36739017 TG
1 TG
36739019 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:36739204 original size:18 final size:19
Alignment explanation
Indices: 36739183--36739219 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36739173 TTATTATTAA
36739183 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
36739201 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
36739220 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:36739327 original size:59 final size:58
Alignment explanation
Indices: 36739261--36739446 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 58
36739251 CTCAAATCAT
* *
36739261 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * *
36739320 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTATTATATGAAT-T-TTTTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
36739380 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
36739440 AATATAT
1 AATATAT
36739447 AATTTATCAT
Statistics
Matches: 102, Mismatches: 11, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
58 6 0.06
59 39 0.38
60 21 0.21
61 31 0.30
62 5 0.05
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:36739384 original size:120 final size:120
Alignment explanation
Indices: 36739163--36739452 Score: 438
Period size: 120 Copynumber: 2.4 Consensus size: 120
36739153 TTAATCATAT
36739163 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * * *
36739228 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
36739285 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
**
36739349 TAAATATTATTATATGAATTTTTTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
36739405 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
36739453 TCATCATACT
Statistics
Matches: 152, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
119 2 0.01
120 107 0.70
121 2 0.01
122 39 0.26
123 2 0.01
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:36745454 original size:27 final size:27
Alignment explanation
Indices: 36745422--36745484 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
36745412 TGTGCTTACT
36745422 CGAGCTGTGAAAATGGGCCTACTCACA
1 CGAGCTGTGAAAATGGGCCTACTCACA
*
36745449 CGAGCTATGAAAATGGGCCTACTCACA
1 CGAGCTGTGAAAATGGGCCTACTCACA
*
36745476 TGAGCTGTG
1 CGAGCTGTG
36745485 GGTCAAAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.21
Consensus pattern (27 bp):
CGAGCTGTGAAAATGGGCCTACTCACA
Found at i:36748355 original size:27 final size:27
Alignment explanation
Indices: 36748325--36748382 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
36748315 TCTCCTAAGA
* *
36748325 GTATAACAATCATTTTACCCTGTGGGG
1 GTATAACAATCATTTTACCCTATGAGG
** **
36748352 GTATTTCGGTCATTTTACCCTATGAGG
1 GTATAACAATCATTTTACCCTATGAGG
36748379 GTAT
1 GTAT
36748383 TTTAGAGCAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (27 bp):
GTATAACAATCATTTTACCCTATGAGG
Found at i:36753099 original size:47 final size:47
Alignment explanation
Indices: 36753036--36753414 Score: 607
Period size: 47 Copynumber: 8.1 Consensus size: 47
36753026 GAAATGATAG
*
36753036 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
36753083 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
36753130 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36753177 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36753224 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36753271 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36753318 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
36753365 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36753411 TAAG
1 TAAG
36753415 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 37 0.12
47 278 0.88
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36767173 original size:29 final size:29
Alignment explanation
Indices: 36767053--36767173 Score: 161
Period size: 29 Copynumber: 4.2 Consensus size: 29
36767043 TATCGACAAT
*
36767053 CATCAAATATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* *
36767082 CATCAAAAATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* ** *
36767111 CATAGAATATGAAAAGGGATGGTTTCAAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
**
36767140 CATCGAATATGAAAAGGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
36767169 CATCG
1 CATCG
36767174 TTTTGTACAC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTGACGAC
Found at i:36776153 original size:50 final size:50
Alignment explanation
Indices: 36776038--36776286 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
36776028 GATAATAACA
* * ** * *
36776038 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
36776089 TGCTC-ATGCCATGTCCCAGACATAGTCTTATAGGGGACCTCTCATCTCGG
1 TGC-CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
36776139 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
36776189 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* *
36776244 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36776287 TTACCCAAAT
Statistics
Matches: 171, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 94 0.55
51 30 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 40 0.23
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:36776402 original size:13 final size:13
Alignment explanation
Indices: 36776381--36776412 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36776371 GCTTGGATCA
*
36776381 TCATCAAATAAAT
1 TCATAAAATAAAT
36776394 TCATAAAATAAAT
1 TCATAAAATAAAT
36776407 TCATAA
1 TCATAA
36776413 TTACTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:36784999 original size:90 final size:88
Alignment explanation
Indices: 36784860--36785053 Score: 235
Period size: 90 Copynumber: 2.2 Consensus size: 88
36784850 TATCGAATAC
*
36784860 GAAAAGGGATAGCTTCGGCTACAACTATGGAAAGGGATAGTGACGACCATCAAACTACGAAAAGG
1 GAAAAGGGATAGCTTCGGCTACAACTATGAAAAGGGATAGTGACGACCATCAAACTACGAAAAGG
** *
36784925 GATGGCTTTGGCCATTAAACTAT
66 GATAACTTTGGCCATCAAACTAT
* * * * * * *
36784948 GAAAAGGGATGGCTTCGGCTGTCAGATTATGAAAAGGGATGGTGACGACCATTAAATTATGAAAA
1 GAAAAGGGATAGCTTCGGCT-ACA-ACTATGAAAAGGGATAGTGACGACCATCAAACTACGAAAA
** *
36785013 GGGATAACTTTGGCTGTCGAACTAT
64 GGGATAACTTTGGCCATCAAACTAT
*
36785038 GAAAAGGGATAACTTC
1 GAAAAGGGATAGCTTC
36785054 AGTTATCAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
88 19 0.22
89 2 0.02
90 67 0.76
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (88 bp):
GAAAAGGGATAGCTTCGGCTACAACTATGAAAAGGGATAGTGACGACCATCAAACTACGAAAAGG
GATAACTTTGGCCATCAAACTAT
Found at i:36785007 original size:30 final size:30
Alignment explanation
Indices: 36784882--36785017 Score: 105
Period size: 30 Copynumber: 4.5 Consensus size: 30
36784872 CTTCGGCTAC
* *
36784882 AACTATGGAAAGGGATAG-TGACGACCATCA
1 AACTATGAAAAGGGATGGCT-ACGACCATCA
* ** * *
36784912 AACTACGAAAAGGGATGGCTTTGGCCATTA
1 AACTATGAAAAGGGATGGCTACGACCATCA
* * **
36784942 AACTATGAAAAGGGATGGCTTCGGCTGTCA
1 AACTATGAAAAGGGATGGCTACGACCATCA
* * *
36784972 GATTATGAAAAGGGATGG-TGACGACCATTA
1 AACTATGAAAAGGGATGGCT-ACGACCATCA
*
36785002 AATTATGAAAAGGGAT
1 AACTATGAAAAGGGAT
36785018 AACTTTGGCT
Statistics
Matches: 84, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
29 1 0.01
30 82 0.98
31 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (30 bp):
AACTATGAAAAGGGATGGCTACGACCATCA
Found at i:36785078 original size:90 final size:90
Alignment explanation
Indices: 36784894--36785079 Score: 201
Period size: 90 Copynumber: 2.1 Consensus size: 90
36784884 CTATGGAAAG
* ** * *
36784894 GGATAGTGACGACCATCAAACTACGAAAAGGGATGGCTTTGGCCATTAAACTATGAAAAGGGATG
1 GGATGGTGACGACCATCAAACTACGAAAAGGGATAACTTTGGCCATCAAACTATGAAAAGGGATA
* * * * ** *
36784959 GCTTCGGCTGTCAGATTATGAAAAG
66 ACTTCAGCTATCAAATTACAAAAAA
* * * ** *
36784984 GGATGGTGACGACCATTAAATTATGAAAAGGGATAACTTTGGCTGTCGAACTATGAAAAGGGATA
1 GGATGGTGACGACCATCAAACTACGAAAAGGGATAACTTTGGCCATCAAACTATGAAAAGGGATA
*
36785049 ACTTCAGTTATCAAATTACAAAAAA
66 ACTTCAGCTATCAAATTACAAAAAA
36785074 GGATGG
1 GGATGG
36785080 GTTAACCATC
Statistics
Matches: 77, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
90 77 1.00
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (90 bp):
GGATGGTGACGACCATCAAACTACGAAAAGGGATAACTTTGGCCATCAAACTATGAAAAGGGATA
ACTTCAGCTATCAAATTACAAAAAA
Found at i:36788514 original size:79 final size:81
Alignment explanation
Indices: 36788378--36788562 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36788368 TTGAATGATG
* *
36788378 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36788442 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36788457 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36788519 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36788537 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36788563 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36788576 original size:40 final size:40
Alignment explanation
Indices: 36788379--36788562 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36788369 TGAATGATGT
* * * *
36788379 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36788419 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36788459 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36788497 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36788538 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36788563 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36788584 original size:79 final size:79
Alignment explanation
Indices: 36788431--36788595 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36788421 GGACTAAGAT
* * **
36788431 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36788496 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36788510 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36788573 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36788589 CCGAAGG
1 CCGAAGG
36788596 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36796463 original size:79 final size:81
Alignment explanation
Indices: 36796327--36796511 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36796317 TTGAATGATG
* *
36796327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36796391 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36796406 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36796468 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36796486 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36796512 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36796525 original size:40 final size:40
Alignment explanation
Indices: 36796328--36796511 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36796318 TGAATGATGT
* * * *
36796328 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36796368 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36796408 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36796446 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36796487 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36796512 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36796533 original size:79 final size:79
Alignment explanation
Indices: 36796380--36796544 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36796370 GGACTAAGAT
* * **
36796380 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36796445 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36796459 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36796522 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36796538 CCGAAGG
1 CCGAAGG
36796545 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36800359 original size:24 final size:27
Alignment explanation
Indices: 36800301--36800359 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 27
36800291 ACAACTGAAT
36800301 TGGCGAACACTAGCTTGCAAAAAATAC
1 TGGCGAACACTAGCTTGCAAAAAATAC
* *
36800328 TGGCGAACAC-A-CTTGC-AATAATTC
1 TGGCGAACACTAGCTTGCAAAAAATAC
36800352 TGGCGAAC
1 TGGCGAAC
36800360 CCTTTACCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 14 0.47
25 5 0.17
26 1 0.03
27 10 0.33
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (27 bp):
TGGCGAACACTAGCTTGCAAAAAATAC
Found at i:36815930 original size:25 final size:25
Alignment explanation
Indices: 36815902--36815971 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
36815892 TTATCAATTC
36815902 TCAGCTCG-AGCGAGCTTACCAATAT
1 TCAGCTCGCA-CGAGCTTACCAATAT
* * *
36815927 TCAGCTTGCATGAGCTTACCGATAT
1 TCAGCTCGCACGAGCTTACCAATAT
* * *
36815952 TCAGCTTGTACAAGCTTACC
1 TCAGCTCGCACGAGCTTACC
36815972 CTTTACAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (25 bp):
TCAGCTCGCACGAGCTTACCAATAT
Found at i:36817772 original size:37 final size:37
Alignment explanation
Indices: 36817711--36817789 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36817701 TTATTACGAA
* * *
36817711 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
36817748 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
36817785 GTCTT
1 GTCTT
36817790 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:36817995 original size:47 final size:47
Alignment explanation
Indices: 36817908--36818453 Score: 804
Period size: 47 Copynumber: 11.4 Consensus size: 47
36817898 CCTTTCGGGA
* * * * * * * *
36817908 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36817955 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36818002 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36818049 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36818096 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36818143 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36818190 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36818237 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
36818288 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36818339 CTTATCACATATACATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36818388 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36818435 CTTATCACACATATACACT
1 CTTATCACATATATACACT
36818454 CTCTTGGCTG
Statistics
Matches: 462, Mismatches: 29, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
47 327 0.71
49 51 0.11
51 76 0.16
53 4 0.01
55 4 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36822022 original size:53 final size:53
Alignment explanation
Indices: 36821913--36822022 Score: 166
Period size: 53 Copynumber: 2.1 Consensus size: 53
36821903 GACTTGGCTA
* * *
36821913 TGTGACCAAGTTAGAGAGTTACACGAGCATGGACACAGACTGGGACACGACCG
1 TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGACTAGGACACAACCG
* * *
36821966 TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGGCTAGGACATAACTG
1 TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGACTAGGACACAACCG
36822019 TGTG
1 TGTG
36822023 TCTCTATTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.32, C:0.21, G:0.30, T:0.17
Consensus pattern (53 bp):
TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGACTAGGACACAACCG
Found at i:36824668 original size:50 final size:50
Alignment explanation
Indices: 36824501--36824742 Score: 179
Period size: 50 Copynumber: 4.7 Consensus size: 50
36824491 AGGGATGAGA
** * **
36824501 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA---TATGAGAAC
* * * *
36824557 TCCCACGTAAGACCATGTCTGGGACATGGCTTTGGCACCAAGATTTGAG--G
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC--GATATGAGAAC
** *
36824607 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * * * *
36824657 TCCCATATAAGACCATATCTGGGATATGTCATTGG--CGGTACATGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ATATGAGAAC
* *
36824705 ATGCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36824743 TGTTATTATC
Statistics
Matches: 152, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
48 12 0.08
49 34 0.22
50 65 0.43
52 4 0.03
53 1 0.01
55 2 0.01
56 34 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:36833170 original size:46 final size:46
Alignment explanation
Indices: 36833118--36833211 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
36833108 ATAGTGTGGC
*
36833118 GTTCATCATATACCAAGGTTCTTATCA-TCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTC-TTGATAGTGGGTCGAG
36833164 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
36833210 GT
1 GT
36833212 CTTTTCTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 44 0.96
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:36837832 original size:21 final size:21
Alignment explanation
Indices: 36837806--36837898 Score: 104
Period size: 21 Copynumber: 4.5 Consensus size: 21
36837796 CTTGTACAGG
*
36837806 ATTGCACTTTGGTGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
*
36837827 ATTGCAC-TCTGGTGCCTCTAT
1 ATTGCACTTC-GGTGCCTCTGT
* *
36837848 ATTGCTCTTCGATGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
36837869 -TTGCACTTCGGTGCCTC--T
1 ATTGCACTTCGGTGCCTCTGT
36837887 ATCTGCACTTCG
1 AT-TGCACTTCG
36837899 ATGCTTTTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 25 0.41
21 32 0.52
22 2 0.03
ACGTcount: A:0.11, C:0.29, G:0.20, T:0.40
Consensus pattern (21 bp):
ATTGCACTTCGGTGCCTCTGT
Found at i:36837884 original size:41 final size:41
Alignment explanation
Indices: 36837808--36837902 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
36837798 TGTACAGGAT
* * *
36837808 TGCACTTTGGTGCCTCTGTATTGCACTCTGGTGCCTCTATAT
1 TGCACTTCGATGCCTCTGTATTGCACTCTGGTGCCTCTAT-C
*
36837850 TGCTCTTCGATGCCTCTGT-TTGCACT-TCGGTGCCTCTATC
1 TGCACTTCGATGCCTCTGTATTGCACTCT-GGTGCCTCTATC
36837890 TGCACTTCGATGC
1 TGCACTTCGATGC
36837903 TTTTGTTACG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 13 0.28
41 18 0.38
42 16 0.34
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (41 bp):
TGCACTTCGATGCCTCTGTATTGCACTCTGGTGCCTCTATC
Found at i:36870554 original size:7 final size:7
Alignment explanation
Indices: 36870542--36870574 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
36870532 GAGAGATGAT
36870542 GGGATAA
1 GGGATAA
36870549 GGGATAA
1 GGGATAA
36870556 GGGATAA
1 GGGATAA
36870563 GGGATAA
1 GGGATAA
36870570 GGGAT
1 GGGAT
36870575 GATTGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.45, T:0.15
Consensus pattern (7 bp):
GGGATAA
Found at i:36875082 original size:27 final size:27
Alignment explanation
Indices: 36875051--36875443 Score: 470
Period size: 27 Copynumber: 14.6 Consensus size: 27
36875041 ATTCATGGGC
* *
36875051 AAATGACTAAAATACCCTCGATGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* **
36875078 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
36875105 AAATTA-TCAAAATACCCTCAAAGAGTA
1 AAATTACT-AAAATACCCTCGAAGGGTA
* *
36875132 AAATTACCAAAATACCCTCGAAGGGTT
1 AAATTACTAAAATACCCTCGAAGGGTA
*
36875159 AAATTA-TCAAAATACCCTCAAAGGGTA
1 AAATTACT-AAAATACCCTCGAAGGGTA
36875186 AAATTACTAAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
36875213 AAATTACTAAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
36875240 AAATTACCAAAATACCCTCGAAGGGTT
1 AAATTACTAAAATACCCTCGAAGGGTA
* * * *
36875267 AAATCA-TCGAAATACCCTCGAAAGGAA
1 AAATTACT-AAAATACCCTCGAAGGGTA
* *
36875294 AAATTACTGAAATACCCTTGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
** * *
36875321 AAATTACCGAAACA-CCTTGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
*
36875347 AAATTACTACAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
36875374 AAATTACTGAAATACCCTCGAAGGATA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
36875401 AATTTACCAAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
36875428 AAATTATTTAAATACC
1 AAATTACTAAAATACC
36875444 TTTAAAAGTA
Statistics
Matches: 313, Mismatches: 46, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.07
27 289 0.92
28 2 0.01
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.22
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGAAGGGTA
Found at i:36880215 original size:4 final size:4
Alignment explanation
Indices: 36880208--36880248 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
36880198 TGGTGATTAG
**
36880208 TTGT TTGT TTGT TTGT TTGT TTGT AAGT TTGT TTGT TTGT T
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT T
36880249 GGCTTAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.05, C:0.00, G:0.24, T:0.71
Consensus pattern (4 bp):
TTGT
Found at i:36882240 original size:20 final size:20
Alignment explanation
Indices: 36882157--36882242 Score: 111
Period size: 20 Copynumber: 4.3 Consensus size: 20
36882147 ATCAAATGTC
*
36882157 ATTTCCATTTC-GATAACCA
1 ATTTCCATTTCATATAACCA
* *
36882176 ATTTCCATTTCATATATCAA
1 ATTTCCATTTCATATAACCA
* *
36882196 ATTCCCATTTCATATATCCA
1 ATTTCCATTTCATATAACCA
36882216 ATTTCCATTTCATATAACCA
1 ATTTCCATTTCATATAACCA
*
36882236 TTTTCCA
1 ATTTCCA
36882243 CCTAATGAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
19 11 0.19
20 47 0.81
ACGTcount: A:0.31, C:0.26, G:0.01, T:0.42
Consensus pattern (20 bp):
ATTTCCATTTCATATAACCA
Found at i:36885327 original size:22 final size:19
Alignment explanation
Indices: 36885302--36885356 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 19
36885292 AAATCGGCAA
36885302 GGAAAAGAAGACAAAGAAAAT
1 GGAAAAGAAGA-AAAG-AAAT
* *
36885323 GGGAAAACAAGAAAAGTAAT
1 -GGAAAAGAAGAAAAGAAAT
36885343 GGAAAAG-AGAAAAG
1 GGAAAAGAAGAAAAG
36885357 GGAAAATGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 6 0.20
20 3 0.10
21 4 0.13
22 10 0.33
ACGTcount: A:0.64, C:0.04, G:0.27, T:0.05
Consensus pattern (19 bp):
GGAAAAGAAGAAAAGAAAT
Found at i:36891080 original size:17 final size:18
Alignment explanation
Indices: 36891044--36891085 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
36891034 TGTTCGCTAA
* *
36891044 TTTTATATTTTATTTCAT
1 TTTTATATTTTATGTAAT
36891062 TTTTAT-TTTTATGTAAT
1 TTTTATATTTTATGTAAT
*
36891079 TTATATA
1 TTTTATA
36891086 ATATAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTTATATTTTATGTAAT
Found at i:36896289 original size:19 final size:18
Alignment explanation
Indices: 36896244--36896296 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
36896234 TAAAAAACAC
* *
36896244 AAATAAATATAAACTCAAA
1 AAAT-AATAAAAATTCAAA
36896263 AAA-AATAAAAATTCAAA
1 AAATAATAAAAATTCAAA
36896280 AAATATATAAAAATTCA
1 AAATA-ATAAAAATTCA
36896297 TGAAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 15 0.50
18 1 0.03
19 14 0.47
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.23
Consensus pattern (18 bp):
AAATAATAAAAATTCAAA
Found at i:36904449 original size:69 final size:69
Alignment explanation
Indices: 36904320--36904510 Score: 310
Period size: 69 Copynumber: 2.7 Consensus size: 69
36904310 ATTCCCCCGA
36904320 GGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCTA---A--GG-GGTTGCTAAGTGCTGATTCCACCGTATCTT
36904385 AAATGTGAAG
60 AAATGTGAAG
36904395 GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGT
1 GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGT
36904460 GAAG
66 GAAG
**
36904464 GGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATT
1 GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTAAGTGCTGATT
36904511 TCCCGAATTA
Statistics
Matches: 114, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
69 85 0.75
70 2 0.02
72 1 0.01
75 26 0.23
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (69 bp):
GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGT
GAAG
Found at i:36906178 original size:9 final size:9
Alignment explanation
Indices: 36906164--36906193 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
36906154 ATCCGAATGT
36906164 TCCACCTCC
1 TCCACCTCC
36906173 TCCACCTCC
1 TCCACCTCC
*
36906182 TCCACCCCC
1 TCCACCTCC
36906191 TCC
1 TCC
36906194 TATTCCTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.70, G:0.00, T:0.20
Consensus pattern (9 bp):
TCCACCTCC
Found at i:36911946 original size:33 final size:33
Alignment explanation
Indices: 36911899--36912053 Score: 133
Period size: 33 Copynumber: 4.6 Consensus size: 33
36911889 TCTCCCGAGG
36911899 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* * *
36911932 GGTTTCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA--TT-CAT-TG--GT
*
36911973 GAGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 G-GTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* *
36912001 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
36912034 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
36912054 ACCGTATCTT
Statistics
Matches: 100, Mismatches: 7, Indels: 30
0.73 0.05 0.22
Matches are distributed among these distances:
27 21 0.21
28 1 0.01
29 1 0.01
31 3 0.03
32 2 0.02
33 40 0.40
34 2 0.02
35 2 0.02
37 2 0.02
38 2 0.02
39 2 0.02
41 4 0.04
42 18 0.18
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.34
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
Found at i:36912008 original size:27 final size:28
Alignment explanation
Indices: 36911969--36912022 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 28
36911959 CTTAAATGTG
36911969 AAGGGAGTTGCTAAGTGCTGATTCCCCC
1 AAGGGAGTTGCTAAGTGCTGATTCCCCC
36911997 AAGGG-GTTGCTAAGTGCTGATTCCCC
1 AAGGGAGTTGCTAAGTGCTGATTCCCC
36912023 GACTCATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (28 bp):
AAGGGAGTTGCTAAGTGCTGATTCCCCC
Found at i:36912049 original size:102 final size:101
Alignment explanation
Indices: 36911868--36912199 Score: 529
Period size: 102 Copynumber: 3.3 Consensus size: 101
36911858 AGTGAATAAA
* * *
36911868 AAGGGGTTGCTAAGTGCTGATTCTCCCGAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTG
1 AAGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTG
*
36911933 GTTTCTAAGTGCTGATTCCACCGTATCTTAAATGTG
66 GTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
* *
36911969 AAGGGAGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 AAGGG-GTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
36912034 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
65 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
* * * *
36912071 AAGGGGGTTGCTAAGTGTTGATTCCCCCGAGAGGTTGCTAAGTGTTGATTCCCCGAATTATTGGT
1 AA-GGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
**
36912136 GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTG
65 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
36912173 AAAGGGGTTGCTAAGTGCTGATTCCCC
1 -AAGGGGTTGCTAAGTGCTGATTCCCC
36912200 GACTTATTAG
Statistics
Matches: 214, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
101 5 0.02
102 204 0.95
103 5 0.02
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (101 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTG
GTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
Found at i:36914470 original size:17 final size:17
Alignment explanation
Indices: 36914448--36914487 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
36914438 GTGATTCAGC
*
36914448 CGTGTGAGGAACATGAT
1 CGTGTGAGGAACACGAT
* *
36914465 CGTGTGAGGCACACGGT
1 CGTGTGAGGAACACGAT
36914482 CGTGTG
1 CGTGTG
36914488 TCATCTGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.20, C:0.17, G:0.40, T:0.23
Consensus pattern (17 bp):
CGTGTGAGGAACACGAT
Found at i:36918767 original size:51 final size:51
Alignment explanation
Indices: 36918710--36918893 Score: 185
Period size: 51 Copynumber: 3.6 Consensus size: 51
36918700 CCGGTTCACA
* * * *
36918710 TAGTAGCCTACACATAGTACTACACATGTGACGATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACGAATATCATCTGATACACG
* ** * * *
36918761 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCT-ATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CGAATATCATCTGATACACG
* * * * *
36918812 CAGTAGCCTGCACATAGTACTACACATGCGAC--CTATCATTTTGCTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACGAATATCA-TCTGATACACG
*
36918862 TAGTAGCCTGTACATAGTACTACACATGTGAC
1 TAGTAGCCTGCACATAGTACTACACATGTGAC
36918894 CTAGCAACTT
Statistics
Matches: 108, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 37 0.34
51 65 0.60
52 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACGAATATCATCTGATACACG
Found at i:36920475 original size:41 final size:41
Alignment explanation
Indices: 36920429--36920526 Score: 169
Period size: 41 Copynumber: 2.4 Consensus size: 41
36920419 ACCAGAATGT
* *
36920429 AAACAGGGGCACGTATGTGCTATTCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTAC
*
36920470 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTAC
36920511 AAACAGGGGCACGTAT
1 AAACAGGGGCACGTAT
36920527 ATGAAATTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.17
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTAC
Found at i:36920478 original size:20 final size:20
Alignment explanation
Indices: 36920453--36920519 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
36920443 ATGTGCTATT
36920453 CAGGGGTACCAAAGTACAAA
1 CAGGGGTACCAAAGTACAAA
* ** * * *
36920473 CAGGGGCACGTATGTGCAATT
1 CAGGGGTACCAAAGTACAA-A
* *
36920494 CAAGGGTACCGAAGTACAAA
1 CAGGGGTACCAAAGTACAAA
36920514 CAGGGG
1 CAGGGG
36920520 CACGTATATG
Statistics
Matches: 32, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.13
Consensus pattern (20 bp):
CAGGGGTACCAAAGTACAAA
Found at i:36924271 original size:40 final size:41
Alignment explanation
Indices: 36924227--36924340 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 41
36924217 GCGTTTGGAT
*
36924227 AAAAAACGCCGCTAAAAATCAAACATTAGCGGCG-CTTTAG
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTCTTTAG
* * * * * * *
36924267 AAAAAACACCGCTAAAGATCCAGTATTAGCAGTGTTTTTAG
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTCTTTAG
* *
36924308 -GAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGT
36924341 TTTCCAAAAA
Statistics
Matches: 58, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
39 11 0.19
40 42 0.72
41 5 0.09
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (41 bp):
AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTCTTTAG
Found at i:36924674 original size:165 final size:164
Alignment explanation
Indices: 36924402--36924751 Score: 515
Period size: 165 Copynumber: 2.1 Consensus size: 164
36924392 TTTCGGGGCG
*
36924402 TTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAGAAGCG
1 TTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAAAAGCG
* *
36924466 CCTCTAATGCTCTGGTCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCGAGTCTTTAGCG
65 CCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCGAGTCTTTAGCG
* * *
36924531 GCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCTT
130 GCGTTTTTGAAAAAGCGCCGCTAATGCTCAGG-CCT
* * *
36924567 TTAGCGGCATTTTTGAAAAAGCGTCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTGAAAAAGCGC
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGC
* * *
36924632 CGCTAATGCTCAGGTCTTTAGCGGCGTTTTTAGAA-AAGCGCCGCTAGTGCTCGGGTCTTTAGCG
66 CGCTAATGCTCAGGTCTTTAGCGGCATTTTT-GAAGAAGCGCCGCTAATGCTCGAGTCTTTAGCG
* *
36924696 GCGTTTTTTAAAAAGCTCCGCTAATGCTCAGGCCT
130 GCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGCCT
* *
36924731 TTAGTGGCGTTTTCGAAAAAG
1 TTAGCGGCGTTTTTGAAAAAG
36924752 TGCTACAAAA
Statistics
Matches: 166, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
164 20 0.12
165 140 0.84
166 6 0.04
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (164 bp):
TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGC
CGCTAATGCTCAGGTCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCGAGTCTTTAGCGG
CGTTTTTGAAAAAGCGCCGCTAATGCTCAGGCCT
Found at i:36924750 original size:41 final size:41
Alignment explanation
Indices: 36924402--36924751 Score: 497
Period size: 41 Copynumber: 8.5 Consensus size: 41
36924392 TTTCGGGGCG
*
36924402 TTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATGCTCGGGGCT
1 TTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTCGGGTCT
* * *
36924443 TTAGCGGCGTTTTTGAAGAAGCGCCTCTAATGCTCTGGTCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCT
* * *
36924484 TTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCGAGTCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCT
*
36924525 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCTT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTC-T
* *
36924567 TTAGCGGCATTTTTGAAAAAGCGTCGCTAATGCTCGGGTCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCT
*
36924608 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGTCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCT
*
36924649 TTAGCGGCGTTTTT-AGAAAAGCGCCGCTAGTGCTCGGGTCT
1 TTAGCGGCGTTTTTGA-AAAAGCGCCGCTAATGCTCGGGTCT
* * * *
36924690 TTAGCGGCGTTTTTTAAAAAGCTCCGCTAATGCTCAGGCCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCT
* *
36924731 TTAGTGGCGTTTTCGAAAAAG
1 TTAGCGGCGTTTTTGAAAAAG
36924752 TGCTACAAAA
Statistics
Matches: 280, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
40 1 0.00
41 238 0.85
42 41 0.15
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCT
Found at i:36926040 original size:7 final size:7
Alignment explanation
Indices: 36925947--36926103 Score: 75
Period size: 7 Copynumber: 21.7 Consensus size: 7
36925937 TATCATTATA
36925947 GTTTAGG
1 GTTTAGG
*
36925954 GATTATGG
1 GTTTA-GG
36925962 GTTTAGG
1 GTTTAGG
* **
36925969 GATTATT
1 GTTTAGG
**
36925976 GTTTATA
1 GTTTAGG
*
36925983 GTTTACG
1 GTTTAGG
36925990 GTTTAAGG
1 GTTT-AGG
36925998 G-TT-GG
1 GTTTAGG
**
36926003 AGTTTAAA
1 -GTTTAGG
36926011 GTTTAGGG
1 GTTTA-GG
36926019 GTTTAAGG
1 GTTT-AGG
36926027 GTTTAGG
1 GTTTAGG
*
36926034 ATTTAGG
1 GTTTAGG
*
36926041 GGTTAGG
1 GTTTAGG
*
36926048 TGTTTATG
1 -GTTTAGG
*
36926056 TTTTAGG
1 GTTTAGG
*
36926063 ATTTAGG
1 GTTTAGG
36926070 GTTTAGGG
1 GTTTA-GG
* * *
36926078 GATAAAG
1 GTTTAGG
*
36926085 GTTAAGG
1 GTTTAGG
36926092 GTTTAGG
1 GTTTAGG
36926099 GTTTA
1 GTTTA
36926104 AATTAATTAG
Statistics
Matches: 112, Mismatches: 29, Indels: 18
0.70 0.18 0.11
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 79 0.71
8 29 0.26
9 1 0.01
ACGTcount: A:0.22, C:0.01, G:0.35, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:36926581 original size:21 final size:22
Alignment explanation
Indices: 36926556--36926597 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36926546 TGCCTTTTTT
36926556 CCCTAAAT-TTCCCCCTAAAAC
1 CCCTAAATCTTCCCCCTAAAAC
* *
36926577 CCCTAATTCTTTCCCCTAAAA
1 CCCTAAATCTTCCCCCTAAAA
36926598 TTTGTATCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.29
Consensus pattern (22 bp):
CCCTAAATCTTCCCCCTAAAAC
Found at i:36930206 original size:43 final size:43
Alignment explanation
Indices: 36930146--36930236 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
36930136 CTTTGAGTTC
* * * *
36930146 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
36930188 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
36930231 ATTACC
1 ATTACC
36930237 TTGCATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:36930350 original size:13 final size:14
Alignment explanation
Indices: 36930334--36930363 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
36930324 AATTTATTAT
36930334 TTTAAATTC-TAAA
1 TTTAAATTCATAAA
36930347 TTTAAATTCATAAA
1 TTTAAATTCATAAA
36930361 TTT
1 TTT
36930364 TTATATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTAAATTCATAAA
Found at i:36930720 original size:42 final size:44
Alignment explanation
Indices: 36930550--36930729 Score: 142
Period size: 43 Copynumber: 4.2 Consensus size: 44
36930540 AGGCCTATTT
* * *
36930550 TATAGCGGCGTTTGT-ACGAAAAAGCGTCGCTAAATATC-TGTTC
1 TATAGCGGCGTTTGTGA-GAAAGAGCGTCGCTAAAGATCATGGTC
* * * ** **
36930593 TATAGTGGCATTTGTGAGAAA-ATCACCGCTAAA-AGTCATGACC
1 TATAGCGGCGTTTGTGAGAAAGAGCGTCGCTAAAGA-TCATGGTC
* * *
36930636 TATAGCGGCGTTTGTGGGAGA-AGCG-CTGCTAAAGGTCATGGTC
1 TATAGCGGCGTTTGTGAGAAAGAGCGTC-GCTAAAGATCATGGTC
*
36930679 TATAGCGACGTTTGT-AGAAAGA-CGTCGCTAAAGATCATGGTC
1 TATAGCGGCGTTTGTGAGAAAGAGCGTCGCTAAAGATCATGGTC
*
36930721 TTTAGCGGC
1 TATAGCGGC
36930730 ATTTTTTTAT
Statistics
Matches: 108, Mismatches: 22, Indels: 15
0.74 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 39 0.36
43 67 0.62
44 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (44 bp):
TATAGCGGCGTTTGTGAGAAAGAGCGTCGCTAAAGATCATGGTC
Found at i:36930834 original size:22 final size:22
Alignment explanation
Indices: 36930798--36930840 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36930788 TTGCGGCGCT
*
36930798 AAAAAGTGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAGGCCTA
*
36930820 AAAAAGCGCCTCTAAAGGCCT
1 AAAAAGCGCCGCTAAAGGCCT
36930841 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAGGCCTA
Found at i:36933043 original size:18 final size:18
Alignment explanation
Indices: 36933020--36933055 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36933010 ACCATCATAG
36933020 AAAAGTAGATGGATTCTT
1 AAAAGTAGATGGATTCTT
36933038 AAAAGTAGATGGATTCTT
1 AAAAGTAGATGGATTCTT
36933056 TCTTTTGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (18 bp):
AAAAGTAGATGGATTCTT
Found at i:36934045 original size:69 final size:69
Alignment explanation
Indices: 36933866--36934037 Score: 200
Period size: 69 Copynumber: 2.5 Consensus size: 69
36933856 GCTTACAAGT
* * * * *
36933866 GAAGAGCCGCAATCTTCAACACAGTTAACGAGAGCAAAGCTCCCAACTGTTATATGAAGGCTTGT
1 GAAGAGCCGCAACCTTCAACATAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATGAAGGCTCGT
*
36933931 AGGC
66 AGGA
* * * * * ** *
36933935 GAAAAACCACAACCTTCAACTTAGTTAGCAAGAGCAAAGCTCCCAACTGTCATATTTATGCTCGT
1 GAAGAGCCGCAACCTTCAACATAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATGAAGGCTCGT
36934000 AGGA
66 AGGA
* *
36934004 GAAGAGCCGCAACCTCCAACATAGTTAGTGAGAG
1 GAAGAGCCGCAACCTTCAACATAGTTAGCGAGAG
36934038 TGAAGCTCTT
Statistics
Matches: 82, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (69 bp):
GAAGAGCCGCAACCTTCAACATAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATGAAGGCTCGT
AGGA
Found at i:36934213 original size:59 final size:59
Alignment explanation
Indices: 36934116--36934474 Score: 353
Period size: 59 Copynumber: 6.1 Consensus size: 59
36934106 ATTAAAAAAT
* * * *
36934116 CCCAGCTATGCTACCTTTCAAAATTTTCTTAAGTATAAAATAGCTCGCAGAGTAACATC
1 CCCAACTATGTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCGCGGAGTAACATC
* *
36934175 CCCAACTATGTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCCCGGAGTAACATT
1 CCCAACTATGTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCGCGGAGTAACATC
* * ** * * * * *
36934234 ACTAGTTGTGTTATCTTTTAAAAATTCCTTAAGTATAAAATAGCTCGCGAAGTAACATC
1 CCCAACTATGTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCGCGGAGTAACATC
* * *
36934293 CCCAACTATGTTATCTTTCAAAATTTTCTTCAA-TATAAAACAACTCACGGAGTAACATC
1 CCCAACTATGTTATCTTTCAAAATTTTCTT-AAGTATAAAATAGCTCGCGGAGTAACATC
* * * * * * * * * *
36934352 CCTAGCTGTGTTATATTTCAAAATTTTCTTAAGTATGAAACAGCTTGCGAATTCACATC
1 CCCAACTATGTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCGCGGAGTAACATC
* * * * * * * *
36934411 CTCAA-TTTATTATCTATGCAAGATTTTTCTGAAGTATAAAATAGCTCGCGGATTAACATT
1 CCCAACTATGTTATCT-TTCAA-AATTTTCTTAAGTATAAAATAGCTCGCGGAGTAACATC
36934471 CCCA
1 CCCA
36934475 GCTAAAGATT
Statistics
Matches: 240, Mismatches: 56, Indels: 7
0.79 0.18 0.02
Matches are distributed among these distances:
58 9 0.04
59 196 0.82
60 35 0.15
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (59 bp):
CCCAACTATGTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCGCGGAGTAACATC
Found at i:36936156 original size:18 final size:19
Alignment explanation
Indices: 36936116--36936161 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
36936106 TTGTCCAGAT
*
36936116 TTTAAA-TAAATTAATTAA
1 TTTAAACTAAATTAACTAA
*
36936134 CTTAAACTAAA-TAACTAA
1 TTTAAACTAAATTAACTAA
36936152 TTT-AACTAAA
1 TTTAAACTAAA
36936162 AACAAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 7 0.29
18 13 0.54
19 4 0.17
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTAAACTAAATTAACTAA
Found at i:36938178 original size:13 final size:11
Alignment explanation
Indices: 36938144--36938171 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
36938134 AATACAACTT
36938144 TTTTTTTACGA
1 TTTTTTTACGA
36938155 TTTTTTTACGA
1 TTTTTTTACGA
36938166 TTTTTT
1 TTTTTT
36938172 ATAACGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (11 bp):
TTTTTTTACGA
Found at i:36939580 original size:36 final size:39
Alignment explanation
Indices: 36939503--36939580 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 39
36939493 CACCTTGTAA
*
36939503 TAATTTTAGACATATTTAAAAAACACAATTAATTAAGTATT
1 TAATTTTAGACATAATT-AAAAACAC-ATTAATTAAGTATT
*
36939544 TAATTTT-GACATAATT-AAAACAC-TTAATTAATTATT
1 TAATTTTAGACATAATTAAAAACACATTAATTAAGTATT
36939580 T
1 T
36939581 GTCCAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
38 7 0.20
40 8 0.23
41 7 0.20
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (39 bp):
TAATTTTAGACATAATTAAAAACACATTAATTAAGTATT
Found at i:36939629 original size:18 final size:19
Alignment explanation
Indices: 36939589--36939634 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
36939579 TTGTCCAAAT
*
36939589 TTTAAAC-AAATTAATTAA
1 TTTAAACTAAATTAACTAA
*
36939607 ATTAAACTAAA-TAACTAA
1 TTTAAACTAAATTAACTAA
36939625 TTT-AACTAAA
1 TTTAAACTAAA
36939635 AGAAATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 7 0.29
18 14 0.58
19 3 0.12
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTAAACTAAATTAACTAA
Found at i:36939706 original size:20 final size:21
Alignment explanation
Indices: 36939681--36939725 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
36939671 AACTAAAGTA
*
36939681 AGCTAAAAATGAGCT-CATTG
1 AGCTAAAAATGAGCTAAATTG
* *
36939701 AGCTAAGATTGAGCTAAATTG
1 AGCTAAAAATGAGCTAAATTG
36939722 AGCT
1 AGCT
36939726 CAACCAGCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (21 bp):
AGCTAAAAATGAGCTAAATTG
Found at i:36939723 original size:10 final size:11
Alignment explanation
Indices: 36939697--36939725 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
36939687 AAATGAGCTC
36939697 ATTGAGCTAAG
1 ATTGAGCTAAG
36939708 ATTGAGCTAA-
1 ATTGAGCTAAG
36939718 ATTGAGCT
1 ATTGAGCT
36939726 CAACCAGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (11 bp):
ATTGAGCTAAG
Found at i:36946516 original size:19 final size:20
Alignment explanation
Indices: 36946492--36946529 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
36946482 TGAGCTGATT
36946492 GGAGCTGAAA-TGAGCTAAG
1 GGAGCTGAAACTGAGCTAAG
36946511 GGAGCTGAAACTGAGCTAA
1 GGAGCTGAAACTGAGCTAA
36946530 AGTCAGCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.37, C:0.13, G:0.34, T:0.16
Consensus pattern (20 bp):
GGAGCTGAAACTGAGCTAAG
Found at i:36948861 original size:21 final size:21
Alignment explanation
Indices: 36948811--36948853 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
36948801 AAAGTTTTGT
*
36948811 TGAAAAATGTTAATGTTTCGA
1 TGAAAAATTTTAATGTTTCGA
36948832 TGAAAAATTTTAATGTTTCGA
1 TGAAAAATTTTAATGTTTCGA
36948853 T
1 T
36948854 AATTAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (21 bp):
TGAAAAATTTTAATGTTTCGA
Found at i:36952749 original size:37 final size:37
Alignment explanation
Indices: 36952699--36952777 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36952689 TTATTACGAA
* * *
36952699 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36952736 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36952773 GTCTT
1 GTCTT
36952778 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36952974 original size:47 final size:47
Alignment explanation
Indices: 36952896--36953499 Score: 1005
Period size: 47 Copynumber: 12.7 Consensus size: 47
36952886 CCCTTCGGGA
* * * * * *
36952896 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36952943 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36952990 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36953037 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36953084 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36953131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36953180 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36953227 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36953275 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36953324 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36953371 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36953418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36953465 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36953500 AGAATCCTAA
Statistics
Matches: 537, Mismatches: 14, Indels: 12
0.95 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 397 0.74
48 48 0.09
49 91 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36959221 original size:40 final size:40
Alignment explanation
Indices: 36959176--36959411 Score: 201
Period size: 40 Copynumber: 5.9 Consensus size: 40
36959166 CGAATACACG
* * * *
36959176 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
36959216 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
36959256 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
36959296 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * *
36959336 GTAACTC-GCACCAATGC-CTTCGGGTCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
* *
36959377 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
36959412 CATCATTCGA
Statistics
Matches: 156, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
40 141 0.90
41 15 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:36959754 original size:29 final size:29
Alignment explanation
Indices: 36959715--36959793 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
36959705 CTTAATAATC
*
36959715 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
36959745 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
36959774 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36959794 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:36959836 original size:43 final size:43
Alignment explanation
Indices: 36959775--36959896 Score: 244
Period size: 43 Copynumber: 2.8 Consensus size: 43
36959765 TGCATTTCAA
36959775 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36959818 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36959861 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAC
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAC
36959897 GTTACCTTAT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.28, C:0.36, G:0.15, T:0.21
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:36962984 original size:29 final size:29
Alignment explanation
Indices: 36962942--36963015 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
36962932 GTTGTGAGAT
* *
36962942 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36962971 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
36963000 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36963016 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36963423 original size:40 final size:40
Alignment explanation
Indices: 36963328--36963508 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
36963318 GAATGATGTT
* * *
36963328 CGGGCTAAGTCCTGAAG-GC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATC
* * * * * *
36963368 CGGACTAA-TATCCGAAG-GCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGT-CCCGAAGAGCATTCGTGCTAGTGA-TATATC
* *
36963408 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
36963448 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
36963488 CGTGCTAAATCCCGAAGAGCA
1 CGGGCTAAGTCCCGAAGAGCA
36963509 ATCATGCTGG
Statistics
Matches: 115, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 1 0.01
40 95 0.83
41 19 0.17
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
Found at i:36963462 original size:80 final size:80
Alignment explanation
Indices: 36963364--36963521 Score: 203
Period size: 80 Copynumber: 2.0 Consensus size: 80
36963354 TAAGTGACCA
* * *
36963364 TATCCGGACTAATATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGC
1 TATCCGGACTAATATCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGGCTAAATCCCGAAGAGC
*
36963428 ATTCATGCTAGTGATG
65 AATCATGCTAGTGATG
* * * *
36963444 TATCCGGGCTAAGT-TCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGC
1 TATCCGGACTAA-TATCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAATCCCGAAGAGC
*
36963508 AATCATGCTGGTGA
65 AATCATGCTAGTGA
36963522 CGTGTATTCG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 53 0.79
81 14 0.21
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGACTAATATCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAATCCCGAAGAGCA
ATCATGCTAGTGATG
Found at i:36966967 original size:47 final size:47
Alignment explanation
Indices: 36966909--36967398 Score: 781
Period size: 47 Copynumber: 10.5 Consensus size: 47
36966899 AGATTCAGAA
*
36966909 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
36966956 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
36967003 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
36967050 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
36967099 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
36967146 GAAAGTG--TATATGTGATAAGGCCTAATAGCC-ATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
36967190 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
36967237 GAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
36967283 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * *
36967330 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
36967377 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
36967399 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
44 20 0.05
45 23 0.06
46 69 0.17
47 260 0.62
49 46 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:36967293 original size:38 final size:40
Alignment explanation
Indices: 36967116--36967334 Score: 170
Period size: 46 Copynumber: 4.9 Consensus size: 40
36967106 TATATGTGTG
*
36967116 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGT
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G---ATGT
*
36967160 GATAAGGCCTAATAGCC-ATGTGATGAATGTGAAAGTGTATATATGT
1 -ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-----ATGT
*
36967206 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 -ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-----ATGT
36967253 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-----ATGT
*
36967299 GATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAG
1 -ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
36967335 TGTATATATG
Statistics
Matches: 168, Mismatches: 2, Indels: 6
0.95 0.01 0.03
Matches are distributed among these distances:
44 20 0.12
45 16 0.10
46 69 0.41
47 63 0.38
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (40 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGT
Found at i:36967571 original size:37 final size:37
Alignment explanation
Indices: 36967516--36967593 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
36967506 CCGAGCTCTA
* *
36967516 AAGA-CCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36967552 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36967589 AAGAC
1 AAGAC
36967594 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 4 0.11
37 32 0.86
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36969468 original size:14 final size:14
Alignment explanation
Indices: 36969449--36969476 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36969439 TAGAGTAATA
36969449 AAAATAAATAAAAT
1 AAAATAAATAAAAT
36969463 AAAATAAATAAAAT
1 AAAATAAATAAAAT
36969477 TCAAGAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:36971345 original size:20 final size:19
Alignment explanation
Indices: 36971320--36971358 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
36971310 ACAGACTGTA
36971320 TTTTGCAACCTTGATCCCTT
1 TTTTGCAACCTTG-TCCCTT
**
36971340 TTTTGCTCCCTTGTCCCTT
1 TTTTGCAACCTTGTCCCTT
36971359 CAACATGCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.08, C:0.33, G:0.10, T:0.49
Consensus pattern (19 bp):
TTTTGCAACCTTGTCCCTT
Found at i:36978653 original size:22 final size:20
Alignment explanation
Indices: 36978609--36978654 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
36978599 CACATGGTAG
* *
36978609 TGTGTTTGAAAACCGTAGCT
1 TGTGTTGGAAAACCGTAACT
36978629 TGTGTTGGATAAACCGTAACT
1 TGTGTTGGA-AAACCGTAACT
36978650 T-TGTT
1 TGTGTT
36978655 AAATACATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (20 bp):
TGTGTTGGAAAACCGTAACT
Found at i:36983721 original size:19 final size:20
Alignment explanation
Indices: 36983697--36983735 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36983687 CTCACATGAC
*
36983697 AAAGTG-AAAATTGATTTTT
1 AAAGTGAAAAAGTGATTTTT
36983716 AAAGTGAAAAAGTGATTTTT
1 AAAGTGAAAAAGTGATTTTT
36983736 GTGGCCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (20 bp):
AAAGTGAAAAAGTGATTTTT
Found at i:36983839 original size:47 final size:47
Alignment explanation
Indices: 36983781--36983937 Score: 199
Period size: 47 Copynumber: 3.3 Consensus size: 47
36983771 AAGGAGGAAT
* * * *
36983781 AAGTGGTAGTTTATCTGCGAAAGTGGTGGCTTGTCCACAGTATGATA
1 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCACAGTTTTATA
* *
36983828 AAGTGACAGTTTATCTGCAAAAGTGGTGGTTTGTCCACAGTTTTATTA
1 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCACAGTTTTA-TA
* * * * *
36983876 AA-TGGTAGCTTATTTGCAAAAGTGGTGGCTTGTCCACAATTTTATT
1 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCACAGTTTTATA
36983922 AAGTGGCAGTTTATCT
1 AAGTGGCAGTTTATCT
36983938 ACATTACTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
46 3 0.03
47 85 0.92
48 4 0.04
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (47 bp):
AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCACAGTTTTATA
Found at i:36993752 original size:13 final size:14
Alignment explanation
Indices: 36993734--36993763 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
36993724 GTATTAGGAC
36993734 TTTTATATG-GTTA
1 TTTTATATGTGTTA
36993747 TTTTATATGTGTTA
1 TTTTATATGTGTTA
36993761 TTT
1 TTT
36993764 AAGGTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.20, C:0.00, G:0.13, T:0.67
Consensus pattern (14 bp):
TTTTATATGTGTTA
Found at i:37005034 original size:40 final size:38
Alignment explanation
Indices: 37004990--37005279 Score: 255
Period size: 40 Copynumber: 7.7 Consensus size: 38
37004980 GCTCCTCGTT
* *
37004990 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAT-TAGTAACTCGCA
*
37005030 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGA-TTAGTAACTCGCA
*
37005070 CAAATGCCTTCGGGCTTA-CCCGGATTAGT-ACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
37005106 CAAATGCC-TCGGATCTTAG-TCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
37005145 CAAA-GCC-T-GGACTTA-CCCGGATTTAGT--CTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGA-TTAGTAACTCGCA
* *
37005178 CAAATGCCTTCGG-CTTAGCCCGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
37005215 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
37005256 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
37005280 CATCATTCAA
Statistics
Matches: 212, Mismatches: 19, Indels: 39
0.79 0.07 0.14
Matches are distributed among these distances:
33 8 0.04
34 4 0.02
35 14 0.07
36 42 0.20
37 31 0.15
38 12 0.06
39 40 0.19
40 55 0.26
41 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:37005261 original size:110 final size:110
Alignment explanation
Indices: 37005042--37005262 Score: 360
Period size: 110 Copynumber: 2.0 Consensus size: 110
37005032 AATGCCTTCG
*
37005042 GGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTACCCGGATTAGTACTCGCAC
1 GGACTTAACCCGGATTTAGT-ACTCGCACAAATGCCTTCGGGCTTACCCGAATTAGTACTCGCAC
37005107 AAATGCCTCGGATCTTAGTCGGATATGGTCACTTAGCACAAAGCCT
65 AAATGCCTCGGATCTTAGTCGGATATGGTCACTTAGCACAAAGCCT
37005153 GGACTT-ACCCGGATTTAGT-CTCGCACAAATGCCTTC-GGCTTAGCCCGAATTAGTATCTCGCA
1 GGACTTAACCCGGATTTAGTACTCGCACAAATGCCTTCGGGCTTA-CCCGAATTAGTA-CTCGCA
37005215 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAGCCT
64 CAAATGCC-TCGGATCTTAGT-CGGATATGGTCACTTAGCACAAAGCCT
37005263 TCGGGACTTA
Statistics
Matches: 105, Mismatches: 1, Indels: 9
0.91 0.01 0.08
Matches are distributed among these distances:
107 6 0.06
108 28 0.27
109 14 0.13
110 31 0.30
111 26 0.25
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (110 bp):
GGACTTAACCCGGATTTAGTACTCGCACAAATGCCTTCGGGCTTACCCGAATTAGTACTCGCACA
AATGCCTCGGATCTTAGTCGGATATGGTCACTTAGCACAAAGCCT
Found at i:37063846 original size:47 final size:47
Alignment explanation
Indices: 37063777--37064103 Score: 540
Period size: 47 Copynumber: 7.1 Consensus size: 47
37063767 GAAATGATAG
*
37063777 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37063823 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37063870 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-ATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37063916 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37063962 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37064009 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * *
37064056 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37064100 TAAG
1 TAAG
37064104 TCCCGAAGGG
Statistics
Matches: 267, Mismatches: 10, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
44 6 0.02
45 28 0.10
46 79 0.30
47 154 0.58
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:37064027 original size:139 final size:140
Alignment explanation
Indices: 37063777--37064103 Score: 545
Period size: 139 Copynumber: 2.4 Consensus size: 140
37063767 GAAATGATAG
*
37063777 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATG
1 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
37063842 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37063907 A-ATATGTGA
131 ATATATGTGA
37063916 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
37063981 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37064046 ATATATGTGA
131 ATATATGTGA
** * * * * *
37064056 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA-A-ATGTGATAAG
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37064104 TCCCGAAGGG
Statistics
Matches: 178, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
138 10 0.06
139 137 0.77
140 31 0.17
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (140 bp):
TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGA
Found at i:37066186 original size:29 final size:29
Alignment explanation
Indices: 37066151--37066224 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
37066141 GTTGTGAGAT
* *
37066151 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
37066180 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
37066209 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37066225 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:37066670 original size:40 final size:40
Alignment explanation
Indices: 37066535--37066729 Score: 173
Period size: 40 Copynumber: 4.9 Consensus size: 40
37066525 TCGAATGATG
* ** *
37066535 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
37066575 TCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TATA
*
37066615 TCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
*
37066654 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* * * * *
37066694 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
37066730 CGTGTATTCG
Statistics
Matches: 129, Mismatches: 23, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
39 20 0.16
40 103 0.80
41 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
Found at i:37066670 original size:79 final size:80
Alignment explanation
Indices: 37066573--37066729 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 80
37066563 TAAGTGACCA
* * *
37066573 TATCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGAGC
1 TATCCGGACTAAGATCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGGCTAAATCCCGAAGAGC
*
37066636 ATTCATGCTAGTGATG
65 AATCATGCTAGTGATG
* * * * *
37066652 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 TATCCGGACTAAGATCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAATCCCGAAGAGCA
*
37066717 ATCATGCTGGTGA
66 ATCATGCTAGTGA
37066730 CGTGTATTCG
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
79 32 0.48
80 34 0.52
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TATCCGGACTAAGATCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAATCCCGAAGAGCA
ATCATGCTAGTGATG
Found at i:37070185 original size:47 final size:47
Alignment explanation
Indices: 37070120--37070452 Score: 495
Period size: 47 Copynumber: 7.1 Consensus size: 47
37070110 GAAATGATAG
* *
37070120 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37070167 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37070214 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
37070261 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
37070308 TAAGGGCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37070355 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * ** *
37070402 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCGTAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37070449 TAAG
1 TAAG
37070453 TCCCGAAGGG
Statistics
Matches: 260, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 260 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:37077006 original size:25 final size:25
Alignment explanation
Indices: 37076958--37077012 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
37076948 TCAATATAGT
*
37076958 CTATCTATAGTAGTCTCAGTATATA
1 CTATCTATAGTAGTCTCAGGATATA
* *
37076983 CTATCTATAGTAGTTTTAGGATATA
1 CTATCTATAGTAGTCTCAGGATATA
*
37077008 TTATC
1 CTATC
37077013 AAGGACAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (25 bp):
CTATCTATAGTAGTCTCAGGATATA
Found at i:37077373 original size:18 final size:18
Alignment explanation
Indices: 37077343--37077390 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
37077333 TCTTGTTCGT
37077343 TTTCAAAAT-ATTATTC-A
1 TTTC-AAATCATTATTCAA
37077360 TTTACAAATCATTATTCAA
1 TTT-CAAATCATTATTCAA
*
37077379 TTTCAAAACATT
1 TTTCAAATCATT
37077391 TTTTTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.26
18 16 0.59
19 4 0.15
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTCAAATCATTATTCAA
Found at i:37100730 original size:22 final size:20
Alignment explanation
Indices: 37100705--37100784 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 20
37100695 TACAAATTAA
*
37100705 ATCTGTAAGATTACAAAATCAT
1 ATCT-TAAGATTAC-ATATCAT
*
37100727 ATCTTCTAAGATTGCATATCAT
1 ATC-T-TAAGATTACATATCAT
37100749 ATC-TAAGATTACATATCAT
1 ATCTTAAGATTACATATCAT
*
37100768 ATC-TAAGATTGCATATC
1 ATCTTAAGATTACATATC
37100785 TTTGAAGATT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
19 31 0.60
22 12 0.23
23 9 0.17
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCTTAAGATTACATATCAT
Found at i:37100755 original size:19 final size:19
Alignment explanation
Indices: 37100731--37100784 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
37100721 AATCATATCT
37100731 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
37100750 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
37100769 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37100785 TTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37101387 original size:45 final size:45
Alignment explanation
Indices: 37101338--37101455 Score: 164
Period size: 45 Copynumber: 2.6 Consensus size: 45
37101328 TTAGTCTGCC
* * ***
37101338 CCACTGCAATTTCAGGGGGATAAGAGTTGATTTCTTGAGTCTACT
1 CCACTGCAACTTCAGGGAGATAAGACCCGATTTCTTGAGTCTACT
* *
37101383 CCACTGCAACTTCAGGGAGATAAGACCCGCTTTCTTGGGTCTACT
1 CCACTGCAACTTCAGGGAGATAAGACCCGATTTCTTGAGTCTACT
*
37101428 CCACTACAACTTCAGGGAGATAAGACCC
1 CCACTGCAACTTCAGGGAGATAAGACCC
37101456 AATATGATCT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAGATAAGACCCGATTTCTTGAGTCTACT
Found at i:37101666 original size:44 final size:44
Alignment explanation
Indices: 37101568--37101667 Score: 148
Period size: 44 Copynumber: 2.3 Consensus size: 44
37101558 ACTGTAACTT
* * *
37101568 CAGGGAGATAAGATTCACCATCTTCAACCTATTCCACTGCTGAC
1 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
*
37101612 CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACTGTC
1 CAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGAC
37101656 CAGGGAGATAGG
1 CAGGGAGATAGG
37101668 GCTGGGGTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 49 0.96
45 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (44 bp):
CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
Found at i:37101778 original size:43 final size:43
Alignment explanation
Indices: 37101728--37101865 Score: 105
Period size: 44 Copynumber: 3.2 Consensus size: 43
37101718 TATTTTTGAC
37101728 CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
1 CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
* **** * * * * * ** *
37101771 CTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAAC
1 CTGCTTCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCTTCGAT
* * * *
37101816 CTACTCCGCTGCAACCCAGGGAGGCAAGGTTAGTGTCTTCGAT
1 CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
37101859 CTGCTTC
1 CTGCTTC
37101866 ACTTTTGGTG
Statistics
Matches: 61, Mismatches: 32, Indels: 4
0.63 0.33 0.04
Matches are distributed among these distances:
43 21 0.34
44 24 0.39
45 16 0.26
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (43 bp):
CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
Found at i:37101807 original size:88 final size:88
Alignment explanation
Indices: 37101667--37101978 Score: 457
Period size: 88 Copynumber: 3.6 Consensus size: 88
37101657 AGGGAGATAG
* * * * * * *
37101667 GGCTGGGGTCATCGATCTACTTCGCTGTCGGTGCAGGAAGGTAAGATATGCTATTTTTGACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
37101732 TTCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
*
37101755 GGCTGGTGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
37101820 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
37101843 GGTTAGTGTCTTCGATCTGCTTCACTT-TTGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTG
1 GGCTGGTGTCTTCGATCTGCTTC-GTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTG
*
37101907 CTCCGCTACAACCCAGGGAGGCAA
65 CTCCGCTGCAACCCAGGGAGGCAA
* *
37101931 -GTTGGTGTCTTCAATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCT
1 GGCTGGTGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCT
37101979 ATTATCTTCA
Statistics
Matches: 203, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
86 2 0.01
87 41 0.20
88 158 0.78
89 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:37103323 original size:14 final size:15
Alignment explanation
Indices: 37103300--37103332 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
37103290 ATCGACGCTT
37103300 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
37103314 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
37103329 TTCC
1 TTCC
37103333 CAGCTTGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:37108504 original size:3 final size:3
Alignment explanation
Indices: 37108496--37108528 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37108486 ATATAAAAAC
37108496 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37108529 GATACAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37109004 original size:22 final size:20
Alignment explanation
Indices: 37108979--37109058 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 20
37108969 TACAAATTAA
*
37108979 ATCTGTAAGATTACAAAATCAT
1 ATCT-TAAGATTAC-ATATCAT
*
37109001 ATCTTCTAAGATTGCATATCAT
1 ATC-T-TAAGATTACATATCAT
37109023 ATC-TAAGATTACATATCAT
1 ATCTTAAGATTACATATCAT
*
37109042 ATC-TAAGATTGCATATC
1 ATCTTAAGATTACATATC
37109059 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
19 31 0.60
22 12 0.23
23 9 0.17
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCTTAAGATTACATATCAT
Found at i:37109029 original size:19 final size:19
Alignment explanation
Indices: 37109005--37109058 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
37108995 AATCATATCT
37109005 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
37109024 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
37109043 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37109059 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37112304 original size:19 final size:20
Alignment explanation
Indices: 37112259--37112316 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
37112249 AATATCAACA
*
37112259 TCGTAAAAACTATATAAAAAT
1 TCGTAAAAAAT-TATAAAAAT
* **
37112280 TTGTAAAATTTTATAAAAA-
1 TCGTAAAAAATTATAAAAAT
37112299 TCGTAAAAAATTATAAAA
1 TCGTAAAAAATTATAAAA
37112317 TATATACAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 15 0.48
20 8 0.26
21 8 0.26
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
TCGTAAAAAATTATAAAAAT
Found at i:37112327 original size:28 final size:28
Alignment explanation
Indices: 37112270--37112343 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
37112260 CGTAAAAACT
* * *
37112270 ATATAAAAATTTGTAAAATTTTATAAAA
1 ATATAAAAAATTATAAAATTATATAAAA
* *
37112298 ATCGTAAAAAATTATAAAA-TATATACAA
1 AT-ATAAAAAATTATAAAATTATATAAAA
37112326 ATATAAAAAAATTATAAA
1 ATAT-AAAAAATTATAAA
37112344 GTCGTAAGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.63
29 13 0.34
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (28 bp):
ATATAAAAAATTATAAAATTATATAAAA
Found at i:37112629 original size:19 final size:18
Alignment explanation
Indices: 37112605--37112647 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
37112595 AAAAAATTCT
**
37112605 AATTTTTAATAATTTTTA
1 AATTTTTAATAAAATTTA
*
37112623 AATTTTTATTAAAATTTA
1 AATTTTTAATAAAATTTA
37112641 AATTTTT
1 AATTTTT
37112648 TTCTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTTTTAATAAAATTTA
Found at i:37112648 original size:19 final size:19
Alignment explanation
Indices: 37112619--37112671 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
37112609 TTTAATAATT
37112619 TTTAAA-TTTTTATTAAAA
1 TTTAAATTTTTTATTAAAA
37112637 TTTAAATTTTTT-TCTAAAA
1 TTTAAATTTTTTAT-TAAAA
*
37112656 TTTATTATTTTTTATT
1 TTTA-AATTTTTTATT
37112672 TTTCTATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.23
19 14 0.47
20 8 0.27
21 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTAAATTTTTTATTAAAA
Found at i:37112665 original size:26 final size:27
Alignment explanation
Indices: 37112636--37112699 Score: 62
Period size: 26 Copynumber: 2.4 Consensus size: 27
37112626 TTTTATTAAA
37112636 ATTTAAATTTTTTTCTA-AAATTTATT
1 ATTTAAATTTTTTTCTATAAATTTATT
* *
37112662 ATTT--TTTATTTTTCTATAAATTTTTT
1 ATTTAAATT-TTTTTCTATAAATTTATT
*
37112688 TTTCTAAATTTT
1 ATT-TAAATTTT
37112700 AATAAGAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
24 2 0.07
25 8 0.28
26 14 0.48
27 1 0.03
28 2 0.07
29 2 0.07
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (27 bp):
ATTTAAATTTTTTTCTATAAATTTATT
Found at i:37112668 original size:20 final size:19
Alignment explanation
Indices: 37112619--37112659 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
37112609 TTTAATAATT
*
37112619 TTTAAATTTTTAT-TAAAA
1 TTTAAATTTTTTTCTAAAA
37112637 TTTAAATTTTTTTCTAAAA
1 TTTAAATTTTTTTCTAAAA
37112656 TTTA
1 TTTA
37112660 TTATTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAAATTTTTTTCTAAAA
Found at i:37112874 original size:91 final size:92
Alignment explanation
Indices: 37112756--37112931 Score: 230
Period size: 93 Copynumber: 1.9 Consensus size: 92
37112746 TTTTTTATGC
* * ** *
37112756 ATTTTGAAAGTTTAAGTACCCAATTGAGTG-AAAGAAAAA-GTAGGGGCTTAATTGCTTTTTTTG
1 ATTTTGAAAGTTAAAGTACCCAATTGAGTGTAAAAAAAAACAAAGGGGCTTAATTGCTATTTTTG
* * *
37112819 AAGAAGTTTGAGGGCATTTTTTATATAT
66 AAAAAATTTGAGAGC-TTTTTTATATAT
* * *
37112847 ATTTTGAAAGTTAAAGTGCTCAATTGAGTGTAAAAAAAAACAAAGGGGCTTAATTTCTATTTTTG
1 ATTTTGAAAGTTAAAGTACCCAATTGAGTGTAAAAAAAAACAAAGGGGCTTAATTGCTATTTTTG
37112912 AAAAAATTTGAGAGCTTTTT
66 AAAAAATTTGAGAGCTTTTT
37112932 ACTACATTAA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
91 27 0.38
92 13 0.18
93 32 0.44
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.38
Consensus pattern (92 bp):
ATTTTGAAAGTTAAAGTACCCAATTGAGTGTAAAAAAAAACAAAGGGGCTTAATTGCTATTTTTG
AAAAAATTTGAGAGCTTTTTTATATAT
Found at i:37112932 original size:91 final size:90
Alignment explanation
Indices: 37112756--37112932 Score: 221
Period size: 91 Copynumber: 1.9 Consensus size: 90
37112746 TTTTTTATGC
* * ** *
37112756 ATTTTGAAAGTTTAAGTACCCAATTGAGTGAAAGAAAAAGTAGGGGCTTAATTGCTTTTTTTGAA
1 ATTTTGAAAGTTAAAGTACCCAATTGAGTGAAAAAAAAAAAAGGGGCTTAATTGCTATTTTTGAA
* * *
37112821 GAAGTTTGAGGGCATTTTTTATATAT
66 AAAATTTGAGAGCA-TTTTTATATAT
* * *
37112847 ATTTTGAAAGTTAAAGTGCTCAATTGAGTGTAAAAAAAAACAAAGGGGCTTAATTTCTATTTTTG
1 ATTTTGAAAGTTAAAGTACCCAATTGAGTG-AAAAAAAAA-AAAGGGGCTTAATTGCTATTTTTG
37112912 AAAAAATTTGAGAGC-TTTTTA
64 AAAAAATTTGAGAGCATTTTTA
37112933 CTACATTAAG
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
91 33 0.45
92 8 0.11
93 32 0.44
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (90 bp):
ATTTTGAAAGTTAAAGTACCCAATTGAGTGAAAAAAAAAAAAGGGGCTTAATTGCTATTTTTGAA
AAAATTTGAGAGCATTTTTATATAT
Found at i:37119836 original size:96 final size:96
Alignment explanation
Indices: 37119705--37119894 Score: 301
Period size: 96 Copynumber: 2.0 Consensus size: 96
37119695 ATGAAAGGAG
* *
37119705 GAATACGATTAAGCTATCACCTTTTGTGTAGTGTTATTGGTGTAGTTCAAAAGATCATAAGGGTT
1 GAATACGATTAAGCTATCACCTTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTT
37119770 TCCAATG-CGCAATTAAATATCCAAATAGAGA
66 TCCAATGTC-CAATTAAATATCCAAATAGAGA
* * **
37119801 GAATATGATTGAGCTATCATTTTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTT
1 GAATACGATTAAGCTATCACCTTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTT
*
37119866 TCCAATGTCCAATTAAATATCCAACTAGA
66 TCCAATGTCCAATTAAATATCCAAATAGA
37119895 AAAGAAAGTA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 85 0.99
97 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (96 bp):
GAATACGATTAAGCTATCACCTTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTT
TCCAATGTCCAATTAAATATCCAAATAGAGA
Found at i:37121622 original size:17 final size:18
Alignment explanation
Indices: 37121598--37121639 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
37121588 CAACTCTTAT
*
37121598 TATTTTATTATTA-TAAG
1 TATTTTATAATTATTAAG
*
37121615 TTTTTTATAATTATTAAG
1 TATTTTATAATTATTAAG
37121633 TATTTTA
1 TATTTTA
37121640 AGTTATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTTTATAATTATTAAG
Found at i:37121649 original size:18 final size:19
Alignment explanation
Indices: 37121604--37121650 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
37121594 TTATTATTTT
*
37121604 ATTATTATAAGTTTTTTATA
1 ATTATT-TAAGTATTTTATA
37121624 ATTA-TTAAGTATTTTA-A
1 ATTATTTAAGTATTTTATA
*
37121641 GTTATTTAAG
1 ATTATTTAAG
37121651 AGGTTCATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.17
18 15 0.62
19 1 0.04
20 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (19 bp):
ATTATTTAAGTATTTTATA
Found at i:37125731 original size:40 final size:40
Alignment explanation
Indices: 37125593--37125812 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
37125583 TTGAATGATG
* * * *
37125593 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
37125633 TCCGGACTAAGAT-CCGAAGGCATTTGT--GA--TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37125669 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37125708 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37125748 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37125788 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37125813 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
35 14 0.09
36 13 0.08
37 2 0.01
38 1 0.01
39 39 0.24
40 85 0.53
41 6 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37125819 original size:79 final size:77
Alignment explanation
Indices: 37125593--37125831 Score: 272
Period size: 79 Copynumber: 3.1 Consensus size: 77
37125583 TTGAATGATG
* * * *
37125593 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
* *
37125656 TTGTGA-TACTAAT
64 TTGCGAGTACTAAA
* *
37125669 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA-TT
37125733 GTGCGAGTTACTAAA
65 -TGCGAG-TACTAAA
* *
37125748 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
37125812 GAACGAGTAGCTATA
66 G--CGAGTA-CTAAA
37125827 TCCGG
1 TCCGG
37125832 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 13, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
74 1 0.01
75 34 0.24
76 20 0.14
77 6 0.04
78 4 0.03
79 48 0.34
80 27 0.19
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GCGAGTACTAAA
Found at i:37133796 original size:40 final size:40
Alignment explanation
Indices: 37133567--37133789 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
37133557 TTGAATGATG
* * * *
37133567 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
37133607 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTAC--AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37133645 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37133684 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37133724 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37133765 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37133790 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 14
0.87 0.05 0.07
Matches are distributed among these distances:
37 31 0.19
38 4 0.02
39 6 0.04
40 116 0.70
41 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37133807 original size:80 final size:78
Alignment explanation
Indices: 37133571--37133822 Score: 264
Period size: 80 Copynumber: 3.2 Consensus size: 78
37133561 ATGATGTCCG
* * * * *
37133571 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGT
37133634 ACGAGTTAC-AATCC
64 ACGAGTTACTAATCC
* *
37133648 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGT
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGT
*
37133711 GCGAGTTACTAAATCC
64 ACGAGTTACT-AATCC
* * *
37133727 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAA
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTA
37133792 CGAG-TAGCTATATCC
65 CGAGTTA-CTA-ATCC
* * *
37133807 GGTTAAATTCCGAAGG
1 GGCTAAGTCCCGAAGG
37133823 TACGTGATTT
Statistics
Matches: 148, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
76 2 0.01
77 50 0.34
78 8 0.05
79 23 0.16
80 63 0.43
81 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTAC
GAGTTACTAATCC
Done.