Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 123 of 218
Found at i:37136020 original size:32 final size:32
Alignment explanation
Indices: 37135984--37136054 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
37135974 ACTTAATTAG
37135984 AATCAATTAGATCTGGAAACTAAACATCCCCA
1 AATCAATTAGATCTGGAAACTAAACATCCCCA
37136016 AATCAATTAGATCTGGAAACTAAACATCCCCA
1 AATCAATTAGATCTGGAAACTAAACATCCCCA
37136048 AATCAAT
1 AATCAAT
37136055 AAAGAACAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.23
Consensus pattern (32 bp):
AATCAATTAGATCTGGAAACTAAACATCCCCA
Found at i:37137581 original size:44 final size:44
Alignment explanation
Indices: 37137313--37137806 Score: 199
Period size: 44 Copynumber: 11.3 Consensus size: 44
37137303 ACTCTACTGG
* * * * * *
37137313 AACTTCAGAGAGGTAAGATCTATTACTTTAAACTGTTCCACTAC
1 AACTTCAGGGAGATAAGATCTATTACTTCAATCCGCTCCACTAC
* * ** * *
37137357 AACTTCAGAGAGATAGGAT-TATCGGCTTCAATCTGCTCCACTGC
1 AACTTCAGGGAGATAAGATCTAT-TACTTCAATCCGCTCCACTAC
* *** * *
37137401 AACCTT-AGGGAGATAAGATTTGCCATCTTCGATCTG-TCCCACTAC
1 AA-CTTCAGGGAGATAAGATCTATTA-CTTCAATCCGCT-CCACTAC
* * * * * * *
37137446 AACTTCAGGGGGATAAGCT-TGCTTACTT-AGTCTGCTCTACTGC
1 AACTTCAGGGAGATAAGATCT-ATTACTTCAATCCGCTCCACTAC
* * * * * ** *
37137489 AACCTCAGGGAGATAAGACCTA--A-TGCGATCCACTCTGCTGC
1 AACTTCAGGGAGATAAGATCTATTACTTCAATCCGCTCCACTAC
* * *
37137530 AACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCTACTAC
1 AACTTCAGGGAGATAAGATCTATTACTTCAATCCGCTCCACTAC
* ** * *
37137574 AACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCTCCACTGC
1 AACTTCAGGGAGATAAGATCTAT-TACTTCAATCCGCTCCACTAC
* * *** * **
37137618 AACCTCAGGGAGATAAGATTTGCCATCTTCGATTTG-TCCCACTAC
1 AACTTCAGGGAGATAAGATCTATTA-CTTCAATCCGCT-CCACTAC
* * * * * * * *
37137663 AACTTCAGGGGGATAAGACCTGCTTGC-TCAGTCTGCTCCGCTGC
1 AACTTCAGGGAGATAAGATCT-ATTACTTCAATCCGCTCCACTAC
* * * * * *
37137707 AACCTCAGGGAGATAAGACCTA--A-TGT-GATCCACTCTACTGC
1 AACTTCAGGGAGATAAGATCTATTACT-TCAATCCGCTCCACTAC
* *
37137748 AACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCACTAC
1 AACTTCAGGGAGATAAGATCTATTACTTCAATCCGCTCCACTAC
*
37137792 AACTTTAGGGAGATA
1 AACTTCAGGGAGATA
37137807 GGATTTGTGG
Statistics
Matches: 331, Mismatches: 94, Indels: 50
0.70 0.20 0.11
Matches are distributed among these distances:
40 1 0.00
41 58 0.18
42 1 0.00
43 33 0.10
44 171 0.52
45 67 0.20
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATCTATTACTTCAATCCGCTCCACTAC
Found at i:37137804 original size:218 final size:218
Alignment explanation
Indices: 37137195--37137828 Score: 1038
Period size: 217 Copynumber: 2.9 Consensus size: 218
37137185 GACTCGTATC
*
37137195 ATAAGATTTGCCATCTTCGATCTGTCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAGT
1 ATAAGATTTGCCATCTTCGATCTGTCCCACTACAACTTCAGGGGGATAAGACCTGCTTACTCAGT
* * * *
37137260 CTGCTTCGCTACAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGGAACTTCAGAGAG
66 CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAGAG
* * * * *
37137325 GTAAGATCTATTACTTTAAACTGTTCCACTACAACTTCAGAGAGATAGGATTATCGGCTTCAATC
131 ATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATC
*
37137390 TGCTCCACTGCAACCTTAGGGAG
196 TGCTCCACTGCAACCTCAGGGAG
* *
37137413 ATAAGATTTGCCATCTTCGATCTGTCCCACTACAACTTCAGGGGGATAAG-CTTGCTTACTTAGT
1 ATAAGATTTGCCATCTTCGATCTGTCCCACTACAACTTCAGGGGGATAAGACCTGCTTACTCAGT
** *
37137477 CTGCTCTACTGCAACCTCAGGGAGATAAGACCTAATGCGATCCACTCTGCTGCAACTTCAGAGAG
66 CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAGAG
*
37137542 ATAAGATCTATTACTTTAATCCGCTCTACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATC
131 ATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATC
37137607 TGCTCCACTGCAACCTCAGGGAG
196 TGCTCCACTGCAACCTCAGGGAG
* *
37137630 ATAAGATTTGCCATCTTCGATTTGTCCCACTACAACTTCAGGGGGATAAGACCTGCTTGCTCAGT
1 ATAAGATTTGCCATCTTCGATCTGTCCCACTACAACTTCAGGGGGATAAGACCTGCTTACTCAGT
*
37137695 CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTAATGTGATCCACTCTACTGCAACTTCAGAGAG
66 CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAGAG
* * *
37137760 ATAAGATCTATTACTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATT-TGTGGCTTAAAT
131 ATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAT-CGGCTTCAAT
37137824 CTGCT
195 CTGCT
37137829 TCCTTACACT
Statistics
Matches: 385, Mismatches: 29, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
217 201 0.52
218 184 0.48
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (218 bp):
ATAAGATTTGCCATCTTCGATCTGTCCCACTACAACTTCAGGGGGATAAGACCTGCTTACTCAGT
CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAGAG
ATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATC
TGCTCCACTGCAACCTCAGGGAG
Found at i:37137949 original size:129 final size:129
Alignment explanation
Indices: 37137797--37138047 Score: 421
Period size: 129 Copynumber: 1.9 Consensus size: 129
37137787 ACTACAACTT
* * *
37137797 TAGGGAGATAGGATTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACATCTTC
1 TAGGGAGATAGGACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACATCCTC
* *
37137862 GATCTGCTCCACTACTGCTTAGGGATACAAGATCTGTAATTTCCTAACCTATTCCACGGCTAAC
66 GATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACGGCTAAC
* *
37137926 TAGGGATATAGGACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCATCCTC
1 TAGGGAGATAGGACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACATCCTC
* *
37137991 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCAC
66 GATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCAC
37138048 TGCTGGTCAT
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 113 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (129 bp):
TAGGGAGATAGGACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACATCCTC
GATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACGGCTAAC
Found at i:37138098 original size:44 final size:44
Alignment explanation
Indices: 37138035--37138159 Score: 196
Period size: 44 Copynumber: 2.8 Consensus size: 44
37138025 TGTAATTTCC
* **
37138035 CAACCTATTCCACTGCTGGTCATGGAGCTAGGTTTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTGCAATCTT
* *
37138079 CAACCTATTCCACTGCTGGTTAGGGACCTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTGCAATCTT
*
37138123 CTACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTG
1 CAACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTG
37138160 TGATTTCACC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 73 1.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.30
Consensus pattern (44 bp):
CAACCTATTCCACTGCTGGTCAGGGAGCTAGGACTTGCAATCTT
Found at i:37141578 original size:13 final size:12
Alignment explanation
Indices: 37141548--37141603 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
37141538 AATGTGAAAC
*
37141548 AAAAAGAAATTG
1 AAAAAGAAGTTG
37141560 AAAAAGAAGTTG
1 AAAAAGAAGTTG
*
37141572 AAGAAAGAAG-AG
1 AA-AAAGAAGTTG
*
37141584 AAAATG-AGTTAG
1 AAAAAGAAGTT-G
37141596 AAAAAGAA
1 AAAAAGAA
37141604 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 22 0.63
13 8 0.23
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.12
Consensus pattern (12 bp):
AAAAAGAAGTTG
Found at i:37144218 original size:16 final size:16
Alignment explanation
Indices: 37144185--37144236 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
37144175 AGCCTCTCCA
* *
37144185 TTTTTAATTTTTC-AT
1 TTTTTCATTTTTCTTT
37144200 TTTTTC-TTTTTCATTT
1 TTTTTCATTTTTC-TTT
37144216 TTTTTCATTTTTCTTT
1 TTTTTCATTTTTCTTT
37144232 TTTTT
1 TTTTT
37144237 GACTCAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 6 0.19
15 5 0.16
16 15 0.47
17 6 0.19
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCATTTTTCTTT
Found at i:37144232 original size:14 final size:15
Alignment explanation
Indices: 37144185--37144234 Score: 59
Period size: 14 Copynumber: 3.3 Consensus size: 15
37144175 AGCCTCTCCA
*
37144185 TTTTTAATTTTTCAT
1 TTTTTCATTTTTCAT
37144200 TTTTTC-TTTTTCATTT
1 TTTTTCATTTTTCA--T
37144216 TTTTTCATTTTTC-T
1 TTTTTCATTTTTCAT
37144230 TTTTT
1 TTTTT
37144235 TTGACTCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 13 0.42
15 5 0.16
16 7 0.23
17 6 0.19
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTCATTTTTCAT
Found at i:37145132 original size:12 final size:13
Alignment explanation
Indices: 37145115--37145143 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37145105 ATTTTCCTTC
37145115 TTTTCT-TTTTTT
1 TTTTCTCTTTTTT
37145127 TTTTCTCTTTTTT
1 TTTTCTCTTTTTT
37145140 TTTT
1 TTTT
37145144 GTGAATTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTCTCTTTTTT
Found at i:37150098 original size:21 final size:20
Alignment explanation
Indices: 37150074--37150143 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 20
37150064 TATTTTTTTA
*
37150074 AAAATAATGTATGATAAATTT
1 AAAATAATGTATAAT-AATTT
*
37150095 AAAA-CATGTCAATAATAATTT
1 AAAATAATGT--ATAATAATTT
*
37150116 AAAATAATAGTATATTACATTTT
1 AAAATAAT-GTATAATA-A-TTT
37150139 AAAAT
1 AAAAT
37150144 TATATTAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
20 4 0.10
21 18 0.46
22 7 0.18
23 10 0.26
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (20 bp):
AAAATAATGTATAATAATTT
Found at i:37150162 original size:23 final size:22
Alignment explanation
Indices: 37150105--37150164 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
37150095 AAAACATGTC
37150105 AATAATAATTTAAAATAATAGT
1 AATAATAATTTAAAATAATAGT
* * *
37150127 -ATATTACATTTTAAAATTATATT
1 AATAATA-A-TTTAAAATAATAGT
37150150 AATAATAAGTTTAAA
1 AATAATAA-TTTAAA
37150165 GGTAATGTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
21 5 0.17
22 1 0.03
23 19 0.63
24 5 0.17
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (22 bp):
AATAATAATTTAAAATAATAGT
Found at i:37152871 original size:6 final size:6
Alignment explanation
Indices: 37152855--37152915 Score: 50
Period size: 6 Copynumber: 9.5 Consensus size: 6
37152845 GGAATTCAAA
* * *
37152855 AAAAAT AAAAAAT AAAAAT AAAACACT ACAAAT AGAAAT AAAAAGG AAAAAT
1 AAAAAT -AAAAAT AAAAAT AAAA-A-T AAAAAT AAAAAT AAAAA-T AAAAAT
*
37152907 AAAGAT AAA
1 AAAAAT AAA
37152916 CTAAATTGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
6 28 0.62
7 13 0.29
8 4 0.09
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:37152887 original size:14 final size:13
Alignment explanation
Indices: 37152855--37152915 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
37152845 GGAATTCAAA
37152855 AAAAATAAAAAAT
1 AAAAATAAAAAAT
*
37152868 AAAAATAAAACACT
1 AAAAATAAAA-AAT
* *
37152882 ACAAAT-AGAAAT
1 AAAAATAAAAAAT
**
37152894 AAAAAGGAAAAAT
1 AAAAATAAAAAAT
*
37152907 AAAGATAAA
1 AAAAATAAA
37152916 CTAAATTGGT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
12 6 0.17
13 23 0.64
14 7 0.19
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.13
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:37175506 original size:17 final size:17
Alignment explanation
Indices: 37175484--37175519 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37175474 TTCGAAGTTG
* *
37175484 AATAAATGACTAAAATA
1 AATAAATAAATAAAATA
37175501 AATAAATAAATAAAATA
1 AATAAATAAATAAAATA
37175518 AA
1 AA
37175520 AATTGAGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (17 bp):
AATAAATAAATAAAATA
Found at i:37180038 original size:51 final size:51
Alignment explanation
Indices: 37179983--37180108 Score: 225
Period size: 51 Copynumber: 2.5 Consensus size: 51
37179973 CGATCATGTT
* *
37179983 TGTAGTACTGTGTGCAGGCTACTACGTGTATCAGATGAAAATGGTCACGCG
1 TGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAATGGTCACACG
*
37180034 TGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAATGGTCACATG
1 TGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAATGGTCACACG
37180085 TGTAGTACTATGTGCAGGCTACTA
1 TGTAGTACTATGTGCAGGCTACTA
37180109 TGTGAACCTG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (51 bp):
TGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAATGGTCACACG
Found at i:37182376 original size:295 final size:295
Alignment explanation
Indices: 37181840--37182435 Score: 1138
Period size: 295 Copynumber: 2.0 Consensus size: 295
37181830 CATTTCTGAT
*
37181840 TGTTATTAATATTGATTTTGGCATAAAATGGATTCTTCAATATTGGATTGATTTAACGGATATAT
1 TGTTACTAATATTGATTTTGGCATAAAATGGATTCTTCAATATTGGATTGATTTAACGGATATAT
37181905 TAAGCATATGAATGAGTATGTATTGGGCCTCGTATTCCCTAATTAGCGACTCGTAGATAATAATT
66 TAAGCATATGAATGAGTATGTATTGGGCCTCGTATTCCCTAATTAGCGACTCGTAGATAATAATT
*
37181970 TGAAAGTTTTTAATTTGGATAAAATTGTATAACTCAGTTTACTATGTCTATAAGTGTATTTATTC
131 TGAAAGTTTTTAATTTGGATAAAATTATATAACTCAGTTTACTATGTCTATAAGTGTATTTATTC
37182035 TGGTAATGCCTCGTACCCTATTCCAACGTTGAATACGGGTAAAAGGTGTTACAATGTGACATCAC
196 TGGTAATGCCTCGTACCCTATTCCAACGTTGAATACGGGTAAAAGGTGTTACAATGTGACATCAC
*
37182100 CAGATTTGGCCCTAATGTTTAGGCCGGGTTTGGGG
261 CAGATTCGGCCCTAATGTTTAGGCCGGGTTTGGGG
*
37182135 TGTTACTAATATTGATTTTGGCATAAAGTGGATTCTTCAATATTGGATTGATTTAACGGATATAT
1 TGTTACTAATATTGATTTTGGCATAAAATGGATTCTTCAATATTGGATTGATTTAACGGATATAT
37182200 TAAGCATATGAATGAGTATGTATTGGGCCTCGTATTCCCTAATTAGCGACTCGTAGATAATAATT
66 TAAGCATATGAATGAGTATGTATTGGGCCTCGTATTCCCTAATTAGCGACTCGTAGATAATAATT
*
37182265 TGAAAGTTTTTAATTTGGATAAAATTATATAACTCGGTTTACTATGTCTATAAGTGTATTTATTC
131 TGAAAGTTTTTAATTTGGATAAAATTATATAACTCAGTTTACTATGTCTATAAGTGTATTTATTC
37182330 TGGTAATGCCTCGTACCCTATTCCAACGTTGAATACGGGTAAAAGGTGTTACAATGTGACATCAC
196 TGGTAATGCCTCGTACCCTATTCCAACGTTGAATACGGGTAAAAGGTGTTACAATGTGACATCAC
*
37182395 CAGATTCGGCCCTAATGTTTAGGCTGGGTTTGGGG
261 CAGATTCGGCCCTAATGTTTAGGCCGGGTTTGGGG
37182430 TGTTAC
1 TGTTAC
37182436 ATTCAATTCA
Statistics
Matches: 295, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
295 295 1.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.37
Consensus pattern (295 bp):
TGTTACTAATATTGATTTTGGCATAAAATGGATTCTTCAATATTGGATTGATTTAACGGATATAT
TAAGCATATGAATGAGTATGTATTGGGCCTCGTATTCCCTAATTAGCGACTCGTAGATAATAATT
TGAAAGTTTTTAATTTGGATAAAATTATATAACTCAGTTTACTATGTCTATAAGTGTATTTATTC
TGGTAATGCCTCGTACCCTATTCCAACGTTGAATACGGGTAAAAGGTGTTACAATGTGACATCAC
CAGATTCGGCCCTAATGTTTAGGCCGGGTTTGGGG
Found at i:37191027 original size:26 final size:27
Alignment explanation
Indices: 37190957--37191073 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 27
37190947 TTTGGGGAGA
* * *
37190957 GTAAAATGACCGAAATATCCTCGA-AAG
1 GTAAAATGACCGAAATA-CCCCCATAGG
* * *
37190984 GTAAAATAATCGAAATACCCCCGTAGG
1 GTAAAATGACCGAAATACCCCCATAGG
*
37191011 GTAGAAT-ACCGAAATACCCCCATAGG
1 GTAAAATGACCGAAATACCCCCATAGG
** *
37191037 GTAAAATGACCCTAATACCCCTATAGG
1 GTAAAATGACCGAAATACCCCCATAGG
37191064 GTAAAATGAC
1 GTAAAATGAC
37191074 TGTAATGTCC
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 26 0.35
27 49 0.65
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (27 bp):
GTAAAATGACCGAAATACCCCCATAGG
Found at i:37191071 original size:27 final size:27
Alignment explanation
Indices: 37190957--37191103 Score: 111
Period size: 27 Copynumber: 5.5 Consensus size: 27
37190947 TTTGGGGAGA
* * * *
37190957 GTAAAATGACCGAAATATCCTCGA-AAG
1 GTAAAATGACCGTAATA-CCCCCATAGG
* * * *
37190984 GTAAAATAATCGAAATACCCCCGTAGG
1 GTAAAATGACCGTAATACCCCCATAGG
* *
37191011 GTAGAAT-ACCGAAATACCCCCATAGG
1 GTAAAATGACCGTAATACCCCCATAGG
* *
37191037 GTAAAATGACCCTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCCATAGG
* ** **
37191064 GTAAAATGACTGTAAT-GTCCTGTAGG
1 GTAAAATGACCGTAATACCCCCATAGG
37191090 GTAAAATGACCGTA
1 GTAAAATGACCGTA
37191104 TGGCTAAAAT
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
26 46 0.46
27 53 0.54
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCCATAGG
Found at i:37191096 original size:26 final size:27
Alignment explanation
Indices: 37190997--37191100 Score: 95
Period size: 26 Copynumber: 3.9 Consensus size: 27
37190987 AAATAATCGA
** * **
37190997 AATACCCCCGTAGGGTAGAAT-ACCGA
1 AATACCCCTATAGGGTAAAATGACCCT
*
37191023 AATACCCCCATAGGGTAAAATGACCCT
1 AATACCCCTATAGGGTAAAATGACCCT
**
37191050 AATACCCCTATAGGGTAAAATGACTGT
1 AATACCCCTATAGGGTAAAATGACCCT
** *
37191077 AAT-GTCCTGTAGGGTAAAATGACC
1 AATACCCCTATAGGGTAAAATGACC
37191101 GTATGGCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
26 36 0.55
27 30 0.45
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCCT
Found at i:37191297 original size:133 final size:133
Alignment explanation
Indices: 37191102--37191351 Score: 317
Period size: 133 Copynumber: 1.9 Consensus size: 133
37191092 AAAATGACCG
* * * * *
37191102 TATGGCTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACAGTAATGCCCCTGTAGGGTAAAG
1 TATGGCTAAAATAAACGTAATGCCCCTGTAGGGTAAAATAACAGTAATGCCCCTATAAGGTAAAA
* *
37191167 TGAC-TGTAACACCCCTATAGGGTAAAATAACTGTAATGTCCT-GTAGGGTAAAATGACCGTAAT
66 TGACAT-TAACACCCCTATAGGGTAAAATAACCGTAATGCCCTGGT-GGGTAAAATGACCGTAAT
37191230 GCCCT
129 GCCCT
* * * *
37191235 TATGGGTAAAATAAACGTAATGCCCTTGTAGTGTAAAATGATC-GTAATGCCCCTATAAGGTAAA
1 TATGGCTAAAATAAACGTAATGCCCCTGTAGGGTAAAAT-AACAGTAATGCCCCTATAAGGTAAA
** * *
37191299 ATGACATTAATGCCCTTATAGGGTAAAATGACCGTAATGCCCTGGTGGGTAAA
65 ATGACATTAACACCCCTATAGGGTAAAATAACCGTAATGCCCTGGTGGGTAAA
37191352 TTACTATTTT
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
133 94 0.95
134 5 0.05
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (133 bp):
TATGGCTAAAATAAACGTAATGCCCCTGTAGGGTAAAATAACAGTAATGCCCCTATAAGGTAAAA
TGACATTAACACCCCTATAGGGTAAAATAACCGTAATGCCCTGGTGGGTAAAATGACCGTAATGC
CCT
Found at i:37191325 original size:54 final size:54
Alignment explanation
Indices: 37191108--37191340 Score: 292
Period size: 54 Copynumber: 4.4 Consensus size: 54
37191098 ACCGTATGGC
* * *
37191108 TAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACAGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTATAGGGTAAAATAACAGTAATGCCCTTGTAGGG
* * ** * *
37191162 TAAAGTGACTGTAACACCCCTATAGGGTAAAATAACTGTAATGTCC-TGTAGGG
1 TAAAATGACCGTAATGCCCCTATAGGGTAAAATAACAGTAATGCCCTTGTAGGG
* *
37191215 TAAAATGACCGTAATGCCCTTAT-GGGTAAAATAA-ACGTAATGCCCTTGTAGTG
1 TAAAATGACCGTAATGCCCCTATAGGGTAAAATAACA-GTAATGCCCTTGTAGGG
* * * * *
37191268 TAAAATGATCGTAATGCCCCTATAAGGTAAAATGACATTAATGCCCTTATAGGG
1 TAAAATGACCGTAATGCCCCTATAGGGTAAAATAACAGTAATGCCCTTGTAGGG
37191322 TAAAATGACCGTAATGCCC
1 TAAAATGACCGTAATGCCC
37191341 TGGTGGGTAA
Statistics
Matches: 151, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
52 19 0.13
53 52 0.34
54 79 0.52
55 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (54 bp):
TAAAATGACCGTAATGCCCCTATAGGGTAAAATAACAGTAATGCCCTTGTAGGG
Found at i:37191341 original size:27 final size:27
Alignment explanation
Indices: 37191108--37191340 Score: 236
Period size: 27 Copynumber: 8.7 Consensus size: 27
37191098 ACCGTATGGC
* *
37191108 TAAAATGATCGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTATAGGG
* * *
37191135 TAAAATAACAGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTATAGGG
* * **
37191162 TAAAGTGACTGTAACACCCCTATAGGG
1 TAAAATGACCGTAATGCCCCTATAGGG
* * * *
37191189 TAAAATAACTGTAATG-TCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTATAGGG
*
37191215 TAAAATGACCGTAATGCCCTTAT-GGG
1 TAAAATGACCGTAATGCCCCTATAGGG
* * * * *
37191241 TAAAATAAACGTAATGCCCTTGTAGTG
1 TAAAATGACCGTAATGCCCCTATAGGG
* *
37191268 TAAAATGATCGTAATGCCCCTATAAGG
1 TAAAATGACCGTAATGCCCCTATAGGG
** *
37191295 TAAAATGACATTAATGCCCTTATAGGG
1 TAAAATGACCGTAATGCCCCTATAGGG
37191322 TAAAATGACCGTAATGCCC
1 TAAAATGACCGTAATGCCC
37191341 TGGTGGGTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 45 0.27
27 122 0.73
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TAAAATGACCGTAATGCCCCTATAGGG
Found at i:37191368 original size:80 final size:80
Alignment explanation
Indices: 37191108--37191351 Score: 212
Period size: 80 Copynumber: 3.0 Consensus size: 80
37191098 ACCGTATGGC
* * * * * *
37191108 TAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACAGTAATGCCCCTGTA-GGGTAAAGT-GAC
1 TAAAATGATAGTAATGCCCCTATAAGGTAAAATGACAGTAATG-CCCT-TATGGGTAAAATAAAC
** *
37191171 TGTAACACCCCT-ATAGGG
64 -GTAA-TGCCCTGGTAGGG
* * * * *
37191189 TAAAATAACT-GTAATG-TCCTGTAGGGTAAAATGACCGTAATGCCCTTATGGGTAAAATAAACG
1 TAAAATGA-TAGTAATGCCCCTATAAGGTAAAATGACAGTAATGCCCTTATGGGTAAAATAAACG
* *
37191252 TAATGCCCTTGTAGTG
65 TAATGCCCTGGTAGGG
* * * *
37191268 TAAAATGATCGTAATGCCCCTATAAGGTAAAATGACATTAATGCCCTTATAGGGTAAAATGACCG
1 TAAAATGATAGTAATGCCCCTATAAGGTAAAATGACAGTAATGCCCTTAT-GGGTAAAATAAACG
37191333 TAATGCCCTGGT-GGG
65 TAATGCCCTGGTAGGG
37191348 TAAA
1 TAAA
37191352 TTACTATTTT
Statistics
Matches: 136, Mismatches: 20, Indels: 15
0.80 0.12 0.09
Matches are distributed among these distances:
78 7 0.05
79 33 0.24
80 59 0.43
81 36 0.26
82 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (80 bp):
TAAAATGATAGTAATGCCCCTATAAGGTAAAATGACAGTAATGCCCTTATGGGTAAAATAAACGT
AATGCCCTGGTAGGG
Found at i:37191457 original size:24 final size:24
Alignment explanation
Indices: 37191400--37191459 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
37191390 GCTATGGTTA
*
37191400 AATGACTGACTTATCTGTGTTTGG
1 AATGACTGATTTATCTGTGTTTGG
* *
37191424 TATGACTGATTTGTCTGTGATTT-G
1 AATGACTGATTTATCTGTG-TTTGG
37191448 AATGACTGATTT
1 AATGACTGATTT
37191460 TGAGCATGGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 28 0.90
25 3 0.10
ACGTcount: A:0.22, C:0.10, G:0.23, T:0.45
Consensus pattern (24 bp):
AATGACTGATTTATCTGTGTTTGG
Found at i:37191671 original size:32 final size:32
Alignment explanation
Indices: 37191632--37191834 Score: 171
Period size: 32 Copynumber: 6.3 Consensus size: 32
37191622 TGCTATACTT
**
37191632 CTGATGGCTTTGTATCGATCATAGTACTGTTA
1 CTGATGGCTTTGTGCCGATCATAGTACTGTTA
* ** *
37191664 CTAATGGCTTTGTGTTGATCATAGTACTATTA
1 CTGATGGCTTTGTGCCGATCATAGTACTGTTA
* *
37191696 CTGATGGCTTTGTGCCTATCATATTTCACTGTTA
1 CTGATGGCTTTGTGCCGATCATA-GT-ACTGTTA
* * **
37191730 CTGATGGCTGTGTGCCGGTCAT-GTTACCATTA
1 CTGATGGCTTTGTGCCGATCATAG-TACTGTTA
* *
37191762 CTGATGGCTATGTGCCGATCATA-TCACTGCTA
1 CTGATGGCTTTGTGCCGATCATAGT-ACTGTTA
* * *
37191794 CTAATGGCTTTGTG-CGAATCACATTACTG-TA
1 CTGATGGCTTTGTGCCG-ATCATAGTACTGTTA
*
37191825 CTTATGGCTT
1 CTGATGGCTT
37191835 GTAGCCATTC
Statistics
Matches: 139, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
31 14 0.10
32 97 0.70
33 3 0.02
34 25 0.18
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (32 bp):
CTGATGGCTTTGTGCCGATCATAGTACTGTTA
Found at i:37191764 original size:66 final size:64
Alignment explanation
Indices: 37191632--37191808 Score: 205
Period size: 66 Copynumber: 2.7 Consensus size: 64
37191622 TGCTATACTT
** ** *
37191632 CTGATGGCTTTGTATCGATCATAGT-ACTGTTACTAATGGCTTTGTGTTGATCATAGTACTATTA
1 CTGATGGCTTTGTGCCGATCATA-TCACTGTTACTAATGGCTTTGTGCCGATCATAGTACCATTA
* * * *
37191696 CTGATGGCTTTGTGCCTATCATATTTCACTGTTACTGATGGCTGTGTGCCGGTCAT-GTTACCAT
1 CTGATGGCTTTGTGCCGATCATA--TCACTGTTACTAATGGCTTTGTGCCGATCATAG-TACCAT
37191760 TA
63 TA
* *
37191762 CTGATGGCTATGTGCCGATCATATCACTGCTACTAATGGCTTTGTGC
1 CTGATGGCTTTGTGCCGATCATATCACTGTTACTAATGGCTTTGTGC
37191809 GAATCACATT
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
64 41 0.43
65 2 0.02
66 52 0.55
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (64 bp):
CTGATGGCTTTGTGCCGATCATATCACTGTTACTAATGGCTTTGTGCCGATCATAGTACCATTA
Found at i:37197517 original size:13 final size:13
Alignment explanation
Indices: 37197499--37197523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37197489 GTCCAATTTC
37197499 AAAAAATAAAAAT
1 AAAAAATAAAAAT
37197512 AAAAAATAAAAA
1 AAAAAATAAAAA
37197524 AGAGAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:37201738 original size:128 final size:129
Alignment explanation
Indices: 37201510--37202528 Score: 1507
Period size: 128 Copynumber: 7.9 Consensus size: 129
37201500 TCGCTGAAAT
* * * * *
37201510 CACAAGTCCTATATCCCTGACCAGCAGTGAAATAGGTTGAAAATTACAGATCTTCTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
37201575 CAGAAGCGGAGCAGATC-AAAAATGGCAAATCTTATCTTCAAGAATAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* * *
37201638 CACAAGTCCTATATCCCTGACCAGCAGCGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * * *
37201703 CAGTAGCAGAGCAGATCGAAAG-CGACAAATCTTATCTTCAAGAGTAAGAAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* *
37201766 CACAAGTCCTATGTCCCTGGCCAGCAGTGCAATAGGTTGGAAATTACAGATCTTGTCTCCCGAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * *
37201831 AAGTAACGGAGCAGATCG-AAGACGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* * *
37201894 CATAAGTCCTATGTCCCTGGTCAGTAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
*
37201959 CAGTAGCGGAGCAGATCGAAAG-TGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* **
37202022 CACAAGTCCTATGTCCCTGGCCAGCAGTGCAATAGGTTGGAAATTACAGATCTTGTCTCCCGGAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* *
37202087 AAGTAACGGAG-ACGATC-AAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCA-GATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
*
37202150 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * * *
37202215 CAATAGCGAAGCAGATC-AAAGATGGTGAATCTTATCTTCAAGTGTAAGGGTAAGAAGATTTAAG
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAA-GG-AAGCAGATTTAAG
37202279 C
129 C
* *
37202280 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACTGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * * *
37202345 CAGTAGCGGAGCAGATCG-AAGACGGCTAATCGTATCTTCAAGAGTAAGGAAGAAAATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* *
37202408 CACAAGTCCTATGTCCCTGGTCAGTAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
** *
37202473 CAGTAGCGGAGCATCTCG-AAGATGGTGAATCTTATCTTCAAGAGTAAGGAAGCAGA
66 CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGA
37202529 AATGGCTCAT
Statistics
Matches: 812, Mismatches: 70, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
127 8 0.01
128 677 0.83
129 11 0.01
130 116 0.14
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (129 bp):
CACAAGTCCTATGTCCCTGGCCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
CAGTAGCGGAGCAGATCGAAAGATGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
Found at i:37207544 original size:9 final size:9
Alignment explanation
Indices: 37207532--37207565 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
37207522 TCACGAATTT
37207532 TTTTTTGAA
1 TTTTTTGAA
37207541 TTTTTTTGAA
1 -TTTTTTGAA
37207551 TTTTTTGAA
1 TTTTTTGAA
37207560 TTTTTT
1 TTTTTT
37207566 TACAATACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:37207546 original size:10 final size:10
Alignment explanation
Indices: 37207531--37207566 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
37207521 TTCACGAATT
37207531 TTTTTTTGAA
1 TTTTTTTGAA
37207541 TTTTTTTGAA
1 TTTTTTTGAA
37207551 -TTTTTTGAA
1 TTTTTTTGAA
37207560 TTTTTTT
1 TTTTTTT
37207567 ACAATACCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:37207889 original size:30 final size:30
Alignment explanation
Indices: 37207853--37207913 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
37207843 ATAGGAATAC
37207853 TTAGGTTTGGAAAACATTGTGAATGAATGG
1 TTAGGTTTGGAAAACATTGTGAATGAATGG
37207883 TTAGGTTTGGAAAACATTGTGAATGAATGG
1 TTAGGTTTGGAAAACATTGTGAATGAATGG
37207913 T
1 T
37207914 GAAATGGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.34
Consensus pattern (30 bp):
TTAGGTTTGGAAAACATTGTGAATGAATGG
Found at i:37220015 original size:14 final size:14
Alignment explanation
Indices: 37219996--37220025 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37219986 GAGACATGAA
37219996 AACAAAAACCTCAC
1 AACAAAAACCTCAC
37220010 AACAAAAACCTCAC
1 AACAAAAACCTCAC
37220024 AA
1 AA
37220026 ATCTCTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.33, G:0.00, T:0.07
Consensus pattern (14 bp):
AACAAAAACCTCAC
Found at i:37220397 original size:16 final size:17
Alignment explanation
Indices: 37220356--37220405 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 17
37220346 TGAAGCACAT
37220356 ACTTTTTTTTAATAATTC
1 ACTTTTTTTT-ATAATTC
*
37220374 A-TGATTTTTT-TAATTC
1 ACT-TTTTTTTATAATTC
*
37220390 ACTTTTTTTTAAAATT
1 ACTTTTTTTTATAATT
37220406 TCGTATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
16 13 0.50
17 6 0.23
18 7 0.27
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (17 bp):
ACTTTTTTTTATAATTC
Found at i:37222419 original size:12 final size:12
Alignment explanation
Indices: 37222398--37222427 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37222388 TCAGGCAGTT
*
37222398 ACACGGCCTAGC
1 ACACGACCTAGC
37222410 ACACGACCTAGC
1 ACACGACCTAGC
37222422 ACACGA
1 ACACGA
37222428 GAGTATGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (12 bp):
ACACGACCTAGC
Found at i:37224373 original size:22 final size:23
Alignment explanation
Indices: 37224348--37224396 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
37224338 GTTTGGGGTG
* *
37224348 TTACAG-TGTAATATCCTGAAAA
1 TTACAGTTGTAATACCCTAAAAA
*
37224370 TTACTGTTGTAATACCCTAAAAA
1 TTACAGTTGTAATACCCTAAAAA
37224393 TTAC
1 TTAC
37224397 TACAGTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (23 bp):
TTACAGTTGTAATACCCTAAAAA
Found at i:37224380 original size:23 final size:23
Alignment explanation
Indices: 37224354--37224397 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37224344 GGTGTTACAG
* *
37224354 TGTAATATCCTGAAAATTACTGT
1 TGTAATACCCTAAAAATTACTGT
37224377 TGTAATACCCTAAAAATTACT
1 TGTAATACCCTAAAAATTACT
37224398 ACAGTAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (23 bp):
TGTAATACCCTAAAAATTACTGT
Found at i:37224404 original size:23 final size:23
Alignment explanation
Indices: 37224355--37224404 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
37224345 GTGTTACAGT
* * ***
37224355 GTAATATCCTGAAAATTACTGTT
1 GTAATACCCTAAAAATTACTACA
37224378 GTAATACCCTAAAAATTACTACA
1 GTAATACCCTAAAAATTACTACA
37224401 GTAA
1 GTAA
37224405 GAAAGTAGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (23 bp):
GTAATACCCTAAAAATTACTACA
Found at i:37227095 original size:42 final size:42
Alignment explanation
Indices: 37227021--37227123 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 42
37227011 AAGTCAAGTA
* * *
37227021 GTTACACGGCCTGGCACACAGGCGTGTAAAGCCATTTTGA-GT
1 GTTACACGGCCTGACACACAGGCATGTAAAGCCA-TTTCACGT
* ** *
37227063 GTTACACGGCCTGACATATGGGCATGTGAAGCCATTTCACGT
1 GTTACACGGCCTGACACACAGGCATGTAAAGCCATTTCACGT
*
37227105 GTTACACGGCCTGGCACAC
1 GTTACACGGCCTGACACAC
37227124 GGAGTTTGAC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 4 0.08
42 46 0.92
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (42 bp):
GTTACACGGCCTGACACACAGGCATGTAAAGCCATTTCACGT
Found at i:37227988 original size:28 final size:29
Alignment explanation
Indices: 37227927--37227988 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
37227917 AATAAAATAG
* *
37227927 ATGTCTGATTTTATTATTAAGTGTTTAAT
1 ATGTCTGATTTTAATATCAAGTGTTTAAT
* * *
37227956 TTGTCTTATTTTAATA-CAAGTTTTTAAT
1 ATGTCTGATTTTAATATCAAGTGTTTAAT
37227984 ATGTC
1 ATGTC
37227989 ATAACCTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.27, C:0.06, G:0.11, T:0.55
Consensus pattern (29 bp):
ATGTCTGATTTTAATATCAAGTGTTTAAT
Found at i:37227998 original size:28 final size:28
Alignment explanation
Indices: 37227967--37228044 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
37227957 TGTCTTATTT
*
37227967 TAATACAAGTTTTTAATATGTCATA-ACC
1 TAATACATGTTTTTAATATGTCATAGA-C
* * *
37227995 TAATACATGTTATTAATTTGTCCTAGAC
1 TAATACATGTTTTTAATATGTCATAGAC
* *
37228023 TAAAACATGTTTTTATTATGTC
1 TAATACATGTTTTTAATATGTC
37228045 CTAGCTGCTG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (28 bp):
TAATACATGTTTTTAATATGTCATAGAC
Found at i:37228202 original size:14 final size:14
Alignment explanation
Indices: 37228183--37228214 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
37228173 AGGTCATTTA
37228183 GCCCAACCAAACTG
1 GCCCAACCAAACTG
37228197 GCCCAACCAAACTG
1 GCCCAACCAAACTG
37228211 GCCC
1 GCCC
37228215 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:37233319 original size:14 final size:14
Alignment explanation
Indices: 37233300--37233331 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
37233290 AGGTCATTTA
37233300 GCCCAACCAAACTG
1 GCCCAACCAAACTG
37233314 GCCCAACCAAACTG
1 GCCCAACCAAACTG
37233328 GCCC
1 GCCC
37233332 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:37235540 original size:47 final size:47
Alignment explanation
Indices: 37235462--37235841 Score: 598
Period size: 47 Copynumber: 8.1 Consensus size: 47
37235452 CCCTTCGGGA
* * * * * * *
37235462 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
37235509 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235556 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235603 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235650 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37235697 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37235744 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235791 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235838 CTTA
1 CTTA
37235842 CTATCATTTC
Statistics
Matches: 313, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 313 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37239063 original size:25 final size:25
Alignment explanation
Indices: 37239026--37239077 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
37239016 AAGGAATTCA
37239026 CACACACACAGTGCCTCTAATT-ATT
1 CACACACACAGTG-CTCTAATTCATT
* * *
37239051 CACATACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTAATTCATT
37239076 CA
1 CA
37239078 TTAATACACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (25 bp):
CACACACACAGTGCTCTAATTCATT
Found at i:37239404 original size:80 final size:79
Alignment explanation
Indices: 37239237--37239432 Score: 209
Period size: 80 Copynumber: 2.5 Consensus size: 79
37239227 GCCCGAATAC
* * * * * *
37239237 ACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCATGAATGCTCTTCGGGACTTAGC-CCGATATATAACTAGCACCAATGCTCTTCG
37239302 GAACTTAGCCCGGAT
65 GAACTTAGCCCGGAT
* * *
37239317 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGATTTAGTAACTCGCACCAATGC-CTTCG
1 ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGATATA-TAACTAGCACCAATGCTCTTCG
* *
37239381 GATCTTAGTCCGGAT
65 GAACTTAGCCCGGAT
* * *
37239396 ATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCG
1 A-CGTCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCG
37239433 GACATCATTC
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
79 42 0.43
80 51 0.52
81 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGATATATAACTAGCACCAATGCTCTTCGG
AACTTAGCCCGGAT
Found at i:37239434 original size:40 final size:40
Alignment explanation
Indices: 37239253--37239434 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
37239243 CCAGCATGAT
* * *
37239253 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACCAA
* * **
37239293 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACCAA
* * *
37239333 TGCTCTTCGGGACTTAGCCC-GATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACCAA
* *
37239373 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACCAA
*
37239413 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
37239435 CATCATTCGA
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 15 0.13
40 92 0.79
41 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACCAA
Found at i:37239776 original size:29 final size:29
Alignment explanation
Indices: 37239744--37239817 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
37239734 AATCAACACA
* *
37239744 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACC
*
37239773 CGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAACC
37239802 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
37239818 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.07
29 38 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACC
Found at i:37239860 original size:43 final size:43
Alignment explanation
Indices: 37239799--37239944 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
37239789 TGCATTTCAA
37239799 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
37239842 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
37239885 GCCCGCACACTTAGTGCCAAGCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
37239928 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
37239945 TGAAAACCAA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.27, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:37242032 original size:47 final size:47
Alignment explanation
Indices: 37241954--37242333 Score: 589
Period size: 47 Copynumber: 8.1 Consensus size: 47
37241944 CCCTTCAGGA
* * * * * * *
37241954 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
37242001 CCCGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37242048 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37242095 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37242142 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37242189 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37242236 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37242283 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37242330 CTTA
1 CTTA
37242334 CTATCATTTC
Statistics
Matches: 311, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 311 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37251000 original size:28 final size:28
Alignment explanation
Indices: 37250969--37251046 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
37250959 TGTCTTATTT
*
37250969 TAATACAAGTTTTTAATATGTCATA-ACC
1 TAATACATGTTTTTAATATGTCATAGA-C
* * *
37250997 TAATACATGTTATTAATTTGTCCTAGAC
1 TAATACATGTTTTTAATATGTCATAGAC
* *
37251025 TAAAACATGTTTTTATTATGTC
1 TAATACATGTTTTTAATATGTC
37251047 CTAGCTACTG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (28 bp):
TAATACATGTTTTTAATATGTCATAGAC
Found at i:37254526 original size:13 final size:13
Alignment explanation
Indices: 37254508--37254542 Score: 63
Period size: 12 Copynumber: 2.8 Consensus size: 13
37254498 AAGTATATTT
37254508 GTAAAAAAAATTC
1 GTAAAAAAAATTC
37254521 GT-AAAAAAATTC
1 GTAAAAAAAATTC
37254533 GTAAAAAAAA
1 GTAAAAAAAA
37254543 GGTTGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (13 bp):
GTAAAAAAAATTC
Found at i:37265902 original size:28 final size:28
Alignment explanation
Indices: 37265870--37266028 Score: 248
Period size: 28 Copynumber: 5.7 Consensus size: 28
37265860 TACAGTGTGA
*
37265870 GCCTTAGCCCAATACAGCAACAATATGG
1 GCCTTAGCCCAATACAGTAACAATATGG
* *
37265898 GCCTTAGCCCAATACAGCAACAATGTGG
1 GCCTTAGCCCAATACAGTAACAATATGG
*
37265926 GCCTTAGCCCAATACAATAACAATATGG
1 GCCTTAGCCCAATACAGTAACAATATGG
* *
37265954 GCCTTAGCCCAAAACAGTAACAATGTGG
1 GCCTTAGCCCAATACAGTAACAATATGG
37265982 GCCTTAGCCCAATACAGTAACAATATGG
1 GCCTTAGCCCAATACAGTAACAATATGG
37266010 GCCTTAGCCCTAA-ACAGTA
1 GCCTTAGCCC-AATACAGTA
37266029 TCAGTACCAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
28 119 0.98
29 2 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.19
Consensus pattern (28 bp):
GCCTTAGCCCAATACAGTAACAATATGG
Found at i:37266167 original size:26 final size:26
Alignment explanation
Indices: 37266136--37266242 Score: 142
Period size: 26 Copynumber: 4.1 Consensus size: 26
37266126 AACACACCAA
* *
37266136 TATCGCAGCAAAGCTACCAGTAATAC
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
37266162 AATCGCAACAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
37266188 TATCACAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
37266214 TATTGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
37266240 TAT
1 TAT
37266243 ACTTCCTCCA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:37266406 original size:27 final size:27
Alignment explanation
Indices: 37266376--37267095 Score: 132
Period size: 27 Copynumber: 26.7 Consensus size: 27
37266366 TTTCTTCTCC
* *
37266376 TAGGGGTATAATAGTCATTTTACCATA
1 TAGGGGTATATTAGTCATTTTACCCTA
* *
37266403 TAGGGGTATTTTGGTCATTTTACCCTA
1 TAGGGGTATATTAGTCATTTTACCCTA
* *
37266430 TCGTGGTA-ATTCAGTCATTTTACCCTA
1 TAGGGGTATATT-AGTCATTTTACCCTA
* * *
37266457 TGGGGGTAT-TTCGATCATTTCACCCT-
1 TAGGGGTATATTAG-TCATTTTACCCTA
* * * *
37266483 TCGGGGGTAT-TTCGATCATTTCA-CCTT
1 T-AGGGGTATATTAG-TCATTTTACCCTA
* *
37266510 TCGGGGTAT-TTCGGTCATTTTACCCTA
1 TAGGGGTATATT-AGTCATTTTACCCTA
*
37266537 T-GAGGGTA-ATTCAGTCATCTTACCCTA
1 TAG-GGGTATATT-AGTCATTTTACCCTA
* * *
37266564 T-GGGG-ATATT--TCGGTTATTTCTCCTT
1 TAGGGGTATATTAGTC-ATT-TTAC-CCTA
* * * *
37266590 TCAGGAGTAT-TTCAGTTATTTCACCCTT
1 T-AGGGGTATATT-AGTCATTTTACCCTA
* * *
37266618 TGGGGGTAT-TTCGGTCATTTTACTC-A
1 TAGGGGTATATT-AGTCATTTTACCCTA
* * * *
37266644 TCGATGGTATTTTGGTCATTTTACCCT-
1 TAG-GGGTATATTAGTCATTTTACCCTA
* * * * *
37266671 TTGAGGGCAT-TTCGATCATTTTACTCTG
1 TAG-GGGTATATTAG-TCATTTTACCCTA
* *
37266699 TAGAGGTAT-TTCAGTCATTTTACCCTG
1 TAGGGGTATATT-AGTCATTTTACCCTA
* * * *
37266726 TAGGGGTA-CTTCGATCATTTTACTCTTC
1 TAGGGGTATATTAG-TCATTTTAC-CCTA
*
37266754 TA-GGGTAT-TTCAATCATTTTACCCT-
1 TAGGGGTATATT-AGTCATTTTACCCTA
* *
37266779 TCAGGGGTAT-TTCGGTCATTTTA-CCTT
1 T-AGGGGTATATT-AGTCATTTTACCCTA
* *
37266806 TTGAGGGTAT-TTCGGTCATTTTACCC-A
1 TAG-GGGTATATT-AGTCATTTTACCCTA
* * *
37266833 TTGAGGATATTTTAGTCATTTTACCCT-
1 TAG-GGGTATATTAGTCATTTTACCCTA
* * * * * *
37266860 TCGAGGGCATCTCAATTATTTTACCCT-
1 TAG-GGGTATATTAGTCATTTTACCCTA
* * *
37266887 TCGAGGGTAT-TTTGATAATTTTACCCT-
1 TAG-GGGTATATTAG-TCATTTTACCCTA
* * *
37266914 TTGAGGGTAT-TTCGATCATTTTACCCTT
1 TAG-GGGTATATTAG-TCATTTTACCCTA
** *
37266942 TAAAGGTAT-TTCAGTCATTTTA-CCAA
1 TAGGGGTATATT-AGTCATTTTACCCTA
* * * * *
37266968 TTGAGGATATTTTGGTCATTTTA-CCTT
1 TAG-GGGTATATTAGTCATTTTACCCTA
* * *
37266995 TCGAGGGCAT-TTCGATCATTTTACCCT-
1 TAG-GGGTATATTAG-TCATTTTACCCTA
* * * *
37267022 TCGAGGGTATTTTGGT-ATTTTACCCTG
1 TAG-GGGTATATTAGTCATTTTACCCTA
* *
37267049 TAGGGGTATTTTGGTCATTTTA-CCTA
1 TAGGGGTATATTAGTCATTTTACCCTA
37267075 TCAGGGGTAT-TTCAGTCATTT
1 T-AGGGGTATATT-AGTCATTT
37267096 GCCCACAAAT
Statistics
Matches: 547, Mismatches: 97, Indels: 98
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.00
24 1 0.00
25 5 0.01
26 82 0.15
27 417 0.76
28 33 0.06
29 4 0.01
30 2 0.00
31 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (27 bp):
TAGGGGTATATTAGTCATTTTACCCTA
Found at i:37266450 original size:54 final size:52
Alignment explanation
Indices: 37266388--37267095 Score: 489
Period size: 54 Copynumber: 13.2 Consensus size: 52
37266378 GGGGTATAAT
* * * *
37266388 AGTCATTTTACCATATAGGGGTATTTTGGTCATTTTACCCTATCGTGGTAATTC
1 AGTCATTTTACCCT-TAGGGGTATTTCGGTCATTTTACCCT-TCGGGGTATTTC
* * *
37266442 AGTCATTTTACCCTATGGGGGTATTTCGATCATTTCACCCTTCGGGGGTATTTC
1 AGTCATTTTACCCT-TAGGGGTATTTCGGTCATTTTACCCTTC-GGGGTATTTC
* * * *
37266496 -GATCATTTCACCTTTCGGGGTATTTCGGTCATTTTACCCTAT-GAGGGTAATTC
1 AG-TCATTTTACCCTTAGGGGTATTTCGGTCATTTTACCCT-TCG-GGGTATTTC
* * * *
37266549 AGTCATCTTACCC-TATGGGGATATTTCGGTTATTTCT-CCTTTCAGGAGTATTTC
1 AGTCATTTTACCCTTA-GGGG-TATTTCGGTCATTT-TACCCTTC-GGGGTATTTC
* * * * * * *
37266603 AGTTATTTCACCCTTTGGGGGTATTTCGGTCATTTTACTCATCGATGGTATTTT
1 AGTCATTTTACCC-TTAGGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTC
* * * * * * *
37266657 GGTCATTTTACCCTTTGAGGGCATTTCGATCATTTTACTCTGTAGAGGTATTTC
1 AGTCATTTTACCCTTAG-GGGTATTTCGGTCATTTTACCCT-TCGGGGTATTTC
* * * *
37266711 AGTCATTTTACCCTGTAGGGGTACTTCGATCATTTTACTCTTCTAGGGTATTTC
1 AGTCATTTTACCCT-TAGGGGTATTTCGGTCATTTTACCCTTC-GGGGTATTTC
* * *
37266765 AATCATTTTACCCTTCAGGGGTATTTCGGTCATTTTACCTTTTGAGGGTATTTC
1 AGTCATTTTACCCTT-AGGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTC
* * ** * *
37266819 GGTCATTTTACCCATT-GAGGATATTTTAGTCATTTTACCCTTCGAGGGCATCTC
1 AGTCATTTTACCC-TTAG-GGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTC
* * * * * * *
37266873 AATTATTTTACCCTTCGAGGGTATTTTGATAATTTTACCCTTTGAGGGTATTTC
1 AGTCATTTTACCCTTAG-GGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTC
** * * * *
37266927 -GATCATTTTACCCTTTAAAGGTATTTCAGTCATTTTACCAATT-GAGGATATTTT
1 AG-TCATTTTACCC-TTAGGGGTATTTCGGTCATTTTACC-CTTCG-GGGTATTTC
* * * * * *
37266981 GGTCATTTTACCTTTCGAGGGCATTTCGATCATTTTACCCTTCGAGGGTATTTT
1 AGTCATTTTACCCTTAG-GGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTC
* *
37267035 GGT-ATTTTACCCTGTAGGGGTATTTTGGTCATTTTA-CCTATCAGGGGTATTTC
1 AGTCATTTTACCCT-TAGGGGTATTTCGGTCATTTTACCCT-TC-GGGGTATTTC
37267088 AGTCATTT
1 AGTCATTT
37267096 GCCCACAAAT
Statistics
Matches: 518, Mismatches: 103, Indels: 66
0.75 0.15 0.10
Matches are distributed among these distances:
52 5 0.01
53 98 0.19
54 397 0.77
55 17 0.03
56 1 0.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (52 bp):
AGTCATTTTACCCTTAGGGGTATTTCGGTCATTTTACCCTTCGGGGTATTTC
Found at i:37266464 original size:81 final size:79
Alignment explanation
Indices: 37266388--37267095 Score: 490
Period size: 81 Copynumber: 8.8 Consensus size: 79
37266378 GGGGTATAAT
* * *
37266388 AGTCATTTTACCATATAGGGGTATTTTGGTCATTTTACCCTATCGTGGTAATTCAGTCATTTTAC
1 AGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCT-TCGGGGTATTTCAGTCATTTTAC
37266453 CCTATGGGGGTATTTC
65 CCT-TGGGGGTATTTC
* * * * * * *
37266469 -GATCATTTCACCCT-TCGGGGGTATTTCGATCATTTCACCTTTCGGGGTATTTCGGTCATTTTA
1 AG-TCATTTTACCCTAT-AGGGGTATTTTGGTCATTTTACCCTTCGGGGTATTTCAGTCATTTTA
* *
37266532 CCCTATGAGGGTAATTC
64 CCCT-TGGGGGTATTTC
* * * * * * *
37266549 AGTCATCTTACCCTAT-GGGGATATTTCGGTTATTTCT-CCTTTCAGGAGTATTTCAGTTATTTC
1 AGTCATTTTACCCTATAGGGG-TATTTTGGTCATTT-TACCCTTC-GGGGTATTTCAGTCATTTT
37266612 ACCCTTTGGGGGTATTTC
63 ACCC-TTGGGGGTATTTC
* * * * * *
37266630 GGTCATTTTACTC-ATCGATGGTATTTTGGTCATTTTACCCTTTGAGGGCATTTC-GATCATTTT
1 AGTCATTTTACCCTATAG-GGGTATTTTGGTCATTTTACCCTTCG-GGGTATTTCAG-TCATTTT
* * *
37266693 ACTCTGTAGAGGTATTTC
63 ACCCT-TGGGGGTATTTC
* * * * * * *
37266711 AGTCATTTTACCCTGTAGGGGTACTTCGATCATTTTACTCTTCTAGGGTATTTCAATCATTTTAC
1 AGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTTC-GGGGTATTTCAGTCATTTTAC
*
37266776 CCTTCAGGGGTATTTC
65 CCTT-GGGGGTATTTC
* * * * * *
37266792 GGTCATTTTA-CCTTTTGAGGGTATTTCGGTCATTTTACCCATT-GAGGATATTTTAGTCATTTT
1 AGTCATTTTACCCTATAG-GGGTATTTTGGTCATTTTACCC-TTCG-GGGTATTTCAGTCATTTT
* * *
37266855 ACCCTTCGAGGGCATCTC
63 ACCCTT-GGGGGTATTTC
* * * * * *
37266873 AATTATTTTACCCT-TCGAGGGTATTTTGATAATTTTACCCTTTGAGGGTATTTC-GATCATTTT
1 AGTCATTTTACCCTATAG-GGGTATTTTGGTCATTTTACCCTTCG-GGGTATTTCAG-TCATTTT
***
37266936 ACCCTTTAAAGGTATTTC
63 ACCC-TTGGGGGTATTTC
* * * * *
37266954 AGTCATTTTA-CCAATTGAGGATATTTTGGTCATTTTACCTTTCGAGGGCATTTC-GATCATTTT
1 AGTCATTTTACCCTATAG-GGGTATTTTGGTCATTTTACCCTTCG-GGGTATTTCAG-TCATTTT
* *
37267017 ACCCTTCGAGGGTATTTT
63 ACCCTT-GGGGGTATTTC
* *
37267035 GGT-ATTTTACCCTGTAGGGGTATTTTGGTCATTTTA-CCTATCAGGGGTATTTCAGTCATTT
1 AGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCT-TC-GGGGTATTTCAGTCATTT
37267096 GCCCACAAAT
Statistics
Matches: 496, Mismatches: 100, Indels: 63
0.75 0.15 0.10
Matches are distributed among these distances:
79 6 0.01
80 123 0.25
81 355 0.72
82 12 0.02
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (79 bp):
AGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTTCGGGGTATTTCAGTCATTTTACC
CTTGGGGGTATTTC
Found at i:37285332 original size:39 final size:40
Alignment explanation
Indices: 37285231--37285415 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
37285221 TTGAATGATG
* * * *
37285231 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
37285270 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
37285311 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
37285350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
37285389 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37285416 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 79 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:37285369 original size:79 final size:81
Alignment explanation
Indices: 37285231--37285415 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37285221 TTGAATGATG
* *
37285231 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37285295 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37285310 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37285372 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
37285390 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37285416 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:37285437 original size:79 final size:79
Alignment explanation
Indices: 37285284--37285448 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
37285274 GGACTAAGAT
* ** *
37285284 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
37285349 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37285363 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
37285426 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37285442 CCGAAGG
1 CCGAAGG
37285449 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:37289638 original size:20 final size:20
Alignment explanation
Indices: 37289615--37289663 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
37289605 GGGTTAAGAT
37289615 TGAGCTGAATTGAGCACAAA
1 TGAGCTGAATTGAGCACAAA
* * * * *
37289635 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCACAAA
37289655 TGAGCTGAA
1 TGAGCTGAA
37289664 CTAAGTTAAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (20 bp):
TGAGCTGAATTGAGCACAAA
Found at i:37290573 original size:33 final size:33
Alignment explanation
Indices: 37290527--37290598 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
37290517 TTTAGGAGGC
*
37290527 TTACCTTTAGGAGCAGGAAAATAAAGTTCGGTT
1 TTACCTTTAGGAGCAGGAAAACAAAGTTCGGTT
* * *
37290560 TTACCTTTTGGAGCAGGGAAGCAAAGTTCGGTT
1 TTACCTTTAGGAGCAGGAAAACAAAGTTCGGTT
37290593 TTACCT
1 TTACCT
37290599 GGCTCGATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (33 bp):
TTACCTTTAGGAGCAGGAAAACAAAGTTCGGTT
Found at i:37291557 original size:18 final size:17
Alignment explanation
Indices: 37291504--37291549 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
37291494 TTTCTCACTC
*
37291504 TCATTTTCTTTTTCGATT
1 TCATGTTCTTTTTCG-TT
37291522 TCATGTTCTTTTTC-TT
1 TCATGTTCTTTTTCGTT
37291538 TCAT-TTCTTTTT
1 TCATGTTCTTTTT
37291550 TTCGTTTCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
18 13 0.48
ACGTcount: A:0.09, C:0.17, G:0.04, T:0.70
Consensus pattern (17 bp):
TCATGTTCTTTTTCGTT
Found at i:37295636 original size:21 final size:21
Alignment explanation
Indices: 37295612--37295657 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37295602 CTCGCTTTCC
37295612 TTTTCGCCTTTTTCA-TTTTGA
1 TTTTCGCCTTTTTCACTTTT-A
**
37295633 TTTTCTTCTTTTTCACTTTTA
1 TTTTCGCCTTTTTCACTTTTA
37295654 TTTT
1 TTTT
37295658 TCTCTTCTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.09, C:0.17, G:0.04, T:0.70
Consensus pattern (21 bp):
TTTTCGCCTTTTTCACTTTTA
Found at i:37316774 original size:28 final size:28
Alignment explanation
Indices: 37316717--37316778 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
37316707 GGACAAAACA
* * *
37316717 AAGACATGATTTTAATGTGTAATATACT
1 AAGACATGATTTAAATATGTAACATACT
* *
37316745 AAGACATGATTTAAATATGTACCATGCT
1 AAGACATGATTTAAATATGTAACATACT
37316773 AAGACA
1 AAGACA
37316779 AAATAATGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (28 bp):
AAGACATGATTTAAATATGTAACATACT
Found at i:37322478 original size:50 final size:50
Alignment explanation
Indices: 37322397--37322531 Score: 180
Period size: 50 Copynumber: 2.7 Consensus size: 50
37322387 GGGAATAAGA
* **
37322397 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * *
37322447 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * *
37322497 TCCCATGTAAGACCATATCTAGGATATGGCATTGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG
37322532 TAGTACAGGA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
Found at i:37322808 original size:20 final size:20
Alignment explanation
Indices: 37322783--37322831 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
37322773 TGAGTTATTT
37322783 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
37322803 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
37322823 AAG-AAGCAA
1 AAGTAAGCAA
37322832 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:37324079 original size:28 final size:28
Alignment explanation
Indices: 37324022--37324083 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
37324012 GGAAAAAACA
* * *
37324022 AAGACATGATTTTAATGTGTAATATACT
1 AAGACATGATTTAAATATGTAACATACT
* *
37324050 AAGACATGATTTAAATATGTAGCATGCT
1 AAGACATGATTTAAATATGTAACATACT
37324078 AAGACA
1 AAGACA
37324084 AAATAATGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (28 bp):
AAGACATGATTTAAATATGTAACATACT
Found at i:37335465 original size:20 final size:20
Alignment explanation
Indices: 37335440--37335494 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
37335430 CGTAAATTTA
37335440 ATCAAGCTAAAGTTGAACTC
1 ATCAAGCTAAAGTTGAACTC
* *
37335460 ATCAAGCT-GATTTGAACTC
1 ATCAAGCTAAAGTTGAACTC
** *
37335479 ATGGAGCTAAGGTTGA
1 ATCAAGCTAAAGTTGA
37335495 GTTGAGTTTG
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (20 bp):
ATCAAGCTAAAGTTGAACTC
Found at i:37336667 original size:46 final size:46
Alignment explanation
Indices: 37336614--37336707 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
37336604 CAAAGAAAAG
*
37336614 ACCTCGACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAAGAACCTTGGTATATGATGA
37336660 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
37336706 AC
1 AC
37336708 GCCACACTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
Found at i:37339553 original size:18 final size:17
Alignment explanation
Indices: 37339532--37339566 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37339522 CCTCAATCTC
*
37339532 TTTTTCAATTTTCTTTTT
1 TTTTTCAA-ATTCTTTTT
37339550 TTTTTCAAATTCTTTTT
1 TTTTTCAAATTCTTTTT
37339567 CACTCTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCAAATTCTTTTT
Found at i:37342132 original size:46 final size:46
Alignment explanation
Indices: 37342080--37342167 Score: 144
Period size: 46 Copynumber: 1.9 Consensus size: 46
37342070 AAAGACTTTG
37342080 ACCCACTATCAA-GAATGATAGGA-ACCTTGGTATATGATGAACCTCA
1 ACCCACTATCAATG-ATGATAGGACA-CTTGGTATATGATGAACCTCA
37342126 ACCCACTATCAATGATGATAGGACACTTGGTATATGATGAAC
1 ACCCACTATCAATGATGATAGGACACTTGGTATATGATGAAC
37342168 GCCACACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
46 38 0.95
47 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (46 bp):
ACCCACTATCAATGATGATAGGACACTTGGTATATGATGAACCTCA
Found at i:37344986 original size:27 final size:27
Alignment explanation
Indices: 37344956--37345014 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
37344946 CTTTCTCACA
*
37344956 TTTTTTTCAATCTCA-ATCTCGTTTTTC
1 TTTTTCTCAATCTCACATCT-GTTTTTC
* *
37344983 TTTTTCTCACTCTCACTATCTTTTTTTC
1 TTTTTCTCAATCTCAC-ATCTGTTTTTC
37345011 TTTT
1 TTTT
37345015 CTCGAGTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 13 0.48
28 10 0.37
29 4 0.15
ACGTcount: A:0.12, C:0.24, G:0.02, T:0.63
Consensus pattern (27 bp):
TTTTTCTCAATCTCACATCTGTTTTTC
Found at i:37345962 original size:14 final size:14
Alignment explanation
Indices: 37345945--37345971 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37345935 TTTTTTTGGT
37345945 TTTTTTTTCACAAA
1 TTTTTTTTCACAAA
37345959 TTTTTTTTCACAA
1 TTTTTTTTCACAA
37345972 CTTGATATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTTTTTCACAAA
Found at i:37346039 original size:12 final size:11
Alignment explanation
Indices: 37346007--37346038 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
37345997 GAATGGAAAT
37346007 AAATTTTTTTC
1 AAATTTTTTTC
37346018 AAATTTTTTTC
1 AAATTTTTTTC
37346029 AAATTTTTTT
1 AAATTTTTTT
37346039 TGAAGAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (11 bp):
AAATTTTTTTC
Found at i:37346409 original size:46 final size:46
Alignment explanation
Indices: 37346356--37346449 Score: 172
Period size: 46 Copynumber: 2.0 Consensus size: 46
37346346 CAAAGAAAAG
37346356 ACCTCGACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAGGAACCTTGGTATATGATGA
37346402 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37346448 AC
1 AC
37346450 GCCACACTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 46 0.98
47 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
Found at i:37359457 original size:2 final size:2
Alignment explanation
Indices: 37359452--37359510 Score: 91
Period size: 2 Copynumber: 29.5 Consensus size: 2
37359442 ATTATAAATA
* *
37359452 TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG TG TG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
37359494 CG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG T
37359511 ATGTTAAAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.05, G:0.49, T:0.46
Consensus pattern (2 bp):
TG
Found at i:37360733 original size:4 final size:4
Alignment explanation
Indices: 37360724--37360751 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
37360714 AAGTTTTATT
37360724 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
37360752 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:37380042 original size:40 final size:40
Alignment explanation
Indices: 37379993--37380075 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
37379983 TTGAAATATT
37379993 GGAACACTATTTCCATTTACTGAAAGTATGTGATTATTGA
1 GGAACACTATTTCCATTTACTGAAAGTATGTGATTATTGA
*
37380033 GGAACACTATTTCCATTTATTGAAAGTATGTGATTATTGA
1 GGAACACTATTTCCATTTACTGAAAGTATGTGATTATTGA
37380073 GGA
1 GGA
37380076 CATGCTGAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (40 bp):
GGAACACTATTTCCATTTACTGAAAGTATGTGATTATTGA
Found at i:37381788 original size:20 final size:21
Alignment explanation
Indices: 37381757--37381801 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 21
37381747 TTGGAAGCCA
37381757 TCTTTCGGTTAAAGAATGGTT
1 TCTTTCGGTTAAAGAATGGTT
37381778 TCTTT-GGTTAAAGAATGGTT
1 TCTTTCGGTTAAAGAATGGTT
37381798 TCTT
1 TCTT
37381802 CTCATCCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.47
Consensus pattern (21 bp):
TCTTTCGGTTAAAGAATGGTT
Found at i:37386416 original size:27 final size:26
Alignment explanation
Indices: 37386398--37386460 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
37386388 TATAATAGTT
*
37386398 ATTTTACCCTATGGGGGTATTCGATC
1 ATTTTACCCTATGGGGGTATTAGATC
* * *
37386424 ATTTTACCCTATGAGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTA-TTAGATC
37386451 ATTTTACCCT
1 ATTTTACCCT
37386461 TCGAGATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 18 0.53
27 16 0.47
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (26 bp):
ATTTTACCCTATGGGGGTATTAGATC
Found at i:37386471 original size:27 final size:27
Alignment explanation
Indices: 37386398--37386643 Score: 236
Period size: 27 Copynumber: 9.1 Consensus size: 27
37386388 TATAATAGTT
*
37386398 ATTTTACCCTAT-GGGGGTA-TTCGATC
1 ATTTTACCCT-TCGAGGGTATTTCGATC
*
37386424 ATTTTACCCTAT-GAGGGTATTTCGGTC
1 ATTTTACCCT-TCGAGGGTATTTCGATC
** *
37386451 ATTTTACCCTTCGAGATTATTTTTG-TC
1 ATTTTACCCTTCGAGGGTA-TTTCGATC
**
37386478 ATTTTACCAATCGAGGGTATTTCGATC
1 ATTTTACCCTTCGAGGGTATTTCGATC
* * *
37386505 ATTTTATCCATCGAGGGTATTTCAATC
1 ATTTTACCCTTCGAGGGTATTTCGATC
*
37386532 ATTTTACCCTTC-AGGGGTATTTCGGTC
1 ATTTTACCCTTCGA-GGGTATTTCGATC
* *
37386559 ATTTTACCCTTCGAGGATATTTTGATC
1 ATTTTACCCTTCGAGGGTATTTCGATC
** *
37386586 ATTTTATGCTTC-AGGGGTATTT-TAGTC
1 ATTTTACCCTTCGA-GGGTATTTCGA-TC
*
37386613 ATTTTACCCTTCGAGGGTATTTCAATC
1 ATTTTACCCTTCGAGGGTATTTCGATC
37386640 ATTT
1 ATTT
37386644 GCCCACGAAT
Statistics
Matches: 183, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
26 26 0.14
27 150 0.82
28 7 0.04
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATC
Found at i:37386642 original size:81 final size:81
Alignment explanation
Indices: 37386417--37386643 Score: 262
Period size: 81 Copynumber: 2.8 Consensus size: 81
37386407 TATGGGGGTA
* * ** **
37386417 TTCGATCATTTTACCCTAT-GAGGGTATTTCGGTCATTTTACCCTTCGAGATTATTTTTGTCATT
1 TTCGATCATTTTATCC-ATCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATT
*
37386481 TTACCAATCGAGGGTAT
65 TTACCAATCGAGGATAT
* *
37386498 TTCGATCATTTTATCCATCGAGGGTATTTCAATCATTTTACCCTTC-AGGGGTATTTCGGTCATT
1 TTCGATCATTTTATCCATCGAGGGTATTTCAGTCATTTTACCCTTCGA-GGGTATTTCAGTCATT
**
37386562 TTACCCTTCGAGGATAT
65 TTACCAATCGAGGATAT
* * * * *
37386579 TTTGATCATTTTATGCTTC-AGGGGTATTTTAGTCATTTTACCCTTCGAGGGTATTTCAATCATT
1 TTCGATCATTTTATCCATCGA-GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATT
37386643 T
65 T
37386644 GCCCACGAAT
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
80 4 0.03
81 120 0.96
82 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.44
Consensus pattern (81 bp):
TTCGATCATTTTATCCATCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTT
TACCAATCGAGGATAT
Found at i:37387261 original size:34 final size:35
Alignment explanation
Indices: 37387222--37387294 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
37387212 GAAGAGGGAG
* * * *
37387222 AGAAAGGTAGTATTCGGCCA-AGAGACAAGAAGAA
1 AGAAAGGCAATATTCGGCCACAAAGAAAAGAAGAA
*
37387256 AGAAAGGCAATATTCGGCCACAAAGAAAAGAGGAA
1 AGAAAGGCAATATTCGGCCACAAAGAAAAGAAGAA
37387291 AGAA
1 AGAA
37387295 CCAAAGGCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.51, C:0.12, G:0.27, T:0.10
Consensus pattern (35 bp):
AGAAAGGCAATATTCGGCCACAAAGAAAAGAAGAA
Found at i:37389346 original size:20 final size:20
Alignment explanation
Indices: 37389321--37389375 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
37389311 TGTGGTTCAA
*
37389321 CTCATTCGAGCTCAAGTTAC
1 CTCATTCGAGCTCAAGTCAC
* *
37389341 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAC
*
37389361 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
37389376 TTTAACTCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAC
Found at i:37392350 original size:5 final size:5
Alignment explanation
Indices: 37392340--37392366 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37392330 TACTTATTTA
37392340 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
37392367 TTGAAAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:37400039 original size:20 final size:20
Alignment explanation
Indices: 37400016--37400069 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
37400006 AGTTTTTCCC
*
37400016 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
37400036 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
37400056 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
37400070 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:37400051 original size:30 final size:30
Alignment explanation
Indices: 37400016--37400089 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
37400006 AGTTTTTCCC
37400016 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
37400046 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
37400076 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
37400090 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:37400079 original size:20 final size:20
Alignment explanation
Indices: 37400016--37400080 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
37400006 AGTTTTTCCC
* * * *
37400016 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
37400036 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
37400055 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
37400076 AGCTC
1 AGCTC
37400081 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:37405544 original size:24 final size:24
Alignment explanation
Indices: 37405517--37405563 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
37405507 AACCTACAGC
37405517 TAAGAATCAATAAAAATTGCTGAG
1 TAAGAATCAATAAAAATTGCTGAG
37405541 TAAGAATCAATAAAAATTGCTGA
1 TAAGAATCAATAAAAATTGCTGA
37405564 CACCCGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.26
Consensus pattern (24 bp):
TAAGAATCAATAAAAATTGCTGAG
Found at i:37420913 original size:25 final size:25
Alignment explanation
Indices: 37420854--37420956 Score: 118
Period size: 25 Copynumber: 4.1 Consensus size: 25
37420844 GTACATCTAT
* ** *
37420854 GCTCATACGAGCTATGAATTAGTAT
1 GCTCATACGAGCTATAAATCGGTAA
*
37420879 GCT-GTCACGAGCTATAAATCGGTAA
1 GCTCAT-ACGAGCTATAAATCGGTAA
*
37420904 GCTCATACGAGCTGTAAATCGGTAA
1 GCTCATACGAGCTATAAATCGGTAA
* *
37420929 GCTTATACGAGCTGTAAATCGGTAA
1 GCTCATACGAGCTATAAATCGGTAA
37420954 GCT
1 GCT
37420957 TGTATGAGTT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.01
25 66 0.97
26 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTATAAATCGGTAA
Found at i:37420974 original size:25 final size:25
Alignment explanation
Indices: 37420885--37420957 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
37420875 GTATGCTGTC
* *
37420885 ACGAGCTATAAATCGGTAAGCTCAT
1 ACGAGCTGTAAATCGGTAAGCTTAT
37420910 ACGAGCTGTAAATCGGTAAGCTTAT
1 ACGAGCTGTAAATCGGTAAGCTTAT
37420935 ACGAGCTGTAAATCGGTAAGCTT
1 ACGAGCTGTAAATCGGTAAGCTT
37420958 GTATGAGTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (25 bp):
ACGAGCTGTAAATCGGTAAGCTTAT
Found at i:37436577 original size:47 final size:47
Alignment explanation
Indices: 37436499--37436784 Score: 437
Period size: 47 Copynumber: 6.1 Consensus size: 47
37436489 CCCTACGGGA
* * * * * * *
37436499 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
37436546 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37436593 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37436640 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37436687 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37436734 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37436781 CTTA
1 CTTA
37436785 CTATCATTTC
Statistics
Matches: 221, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 221 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37445684 original size:6 final size:6
Alignment explanation
Indices: 37445675--37445764 Score: 65
Period size: 6 Copynumber: 14.7 Consensus size: 6
37445665 TCTTTTTTCG
* * * **
37445675 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
** * *
37445726 CGATTT CTTTTT CTTTTT CGTTTT CTTTTT -GTTTT CTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
37445765 CAATTTCTTT
Statistics
Matches: 62, Mismatches: 19, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
5 4 0.06
6 46 0.74
7 9 0.15
8 3 0.05
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (6 bp):
CTTTTT
Found at i:37445706 original size:14 final size:14
Alignment explanation
Indices: 37445657--37445713 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
37445647 TCAAGCTCTC
37445657 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
37445670 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
37445684 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
37445698 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
37445712 TT
1 TT
37445714 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:37446868 original size:30 final size:30
Alignment explanation
Indices: 37446805--37446868 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
37446795 TTAAACTTGA
*
37446805 TTTTTTTTGCTCACCTTTTTTTTCTTTTCT
1 TTTTTTTTGCTCACCTTTTTTTTCCTTTCT
*
37446835 TTTTTTTTGCTCGA-TTTTTTTTTCACTTT-T
1 TTTTTTTTGCTC-ACCTTTTTTTTC-CTTTCT
37446865 TTTT
1 TTTT
37446869 GAATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.75
Consensus pattern (30 bp):
TTTTTTTTGCTCACCTTTTTTTTCCTTTCT
Found at i:37446877 original size:13 final size:13
Alignment explanation
Indices: 37446835--37446907 Score: 55
Period size: 13 Copynumber: 5.6 Consensus size: 13
37446825 TTTCTTTTCT
37446835 TTTTTTTTGCTCG-A
1 TTTTTTTT--TCGAA
37446849 TTTTTTTTTC--A
1 TTTTTTTTTCGAA
*
37446860 CTTTTTTTT-GAA
1 TTTTTTTTTCGAA
* *
37446872 TTTTTTTCAATCAAA
1 TTTTTTT--TTCGAA
37446887 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
37446900 TTTTTTTT
1 TTTTTTTT
37446908 GATTTTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
11 9 0.19
12 9 0.19
13 12 0.25
14 9 0.19
15 9 0.19
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.70
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:37451999 original size:33 final size:34
Alignment explanation
Indices: 37451948--37452022 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
37451938 AGATTTAAAC
37451948 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
37451982 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
37452015 AATTTAAT
1 AAATTAAT
37452023 AAACTAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:37453752 original size:18 final size:18
Alignment explanation
Indices: 37453729--37453767 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37453719 CTCTTTTTGC
*
37453729 TCTTTTTC-ATTCTCTTTT
1 TCTTTTTCGATT-TATTTT
37453747 TCTTTTTCGATTTATTTT
1 TCTTTTTCGATTTATTTT
37453765 TCT
1 TCT
37453768 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.72
Consensus pattern (18 bp):
TCTTTTTCGATTTATTTT
Found at i:37459795 original size:14 final size:14
Alignment explanation
Indices: 37459776--37459802 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37459766 TGCATCTCCC
37459776 CATGCATGAATCTA
1 CATGCATGAATCTA
37459790 CATGCATGAATCT
1 CATGCATGAATCT
37459803 GCCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:37464508 original size:10 final size:9
Alignment explanation
Indices: 37464485--37464541 Score: 51
Period size: 10 Copynumber: 5.9 Consensus size: 9
37464475 AGCTAATAAC
*
37464485 GAGCTCAAT
1 GAGCTGAAT
37464494 GAGCTGAATT
1 GAGCTGAA-T
*
37464504 GAGCTCGGAT
1 GAGCT-GAAT
*
37464514 GAGCTGACTT
1 GAGCTGA-AT
37464524 GAGCTCGAAT
1 GAGCT-GAAT
37464534 GAGCTGAA
1 GAGCTGAA
37464542 CCACATGAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 11 0.28
10 24 0.62
11 4 0.10
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.23
Consensus pattern (9 bp):
GAGCTGAAT
Found at i:37464515 original size:20 final size:20
Alignment explanation
Indices: 37464485--37464541 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
37464475 AGCTAATAAC
37464485 GAGCTC-AATGAGCTGAATT
1 GAGCTCGAATGAGCTGAATT
* *
37464504 GAGCTCGGATGAGCTGACTT
1 GAGCTCGAATGAGCTGAATT
37464524 GAGCTCGAATGAGCTGAA
1 GAGCTCGAATGAGCTGAA
37464542 CCACATGAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 6 0.18
20 27 0.82
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.23
Consensus pattern (20 bp):
GAGCTCGAATGAGCTGAATT
Found at i:37467642 original size:23 final size:23
Alignment explanation
Indices: 37467613--37467722 Score: 184
Period size: 23 Copynumber: 4.8 Consensus size: 23
37467603 ATGGTTTGGG
*
37467613 TTTGGTACGAAATGGTAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
37467636 TTTGGTACGAAATGGAAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
*
37467659 CTTGGTACGAAATGGAAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
*
37467682 TTTGGTACGAAATGGAAATGTAT
1 TTTGGTACGAAATGGAAATGTAA
*
37467705 TTTGGTTCGAAATGGAAA
1 TTTGGTACGAAATGGAAA
37467723 GGGTTCAAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 82 1.00
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (23 bp):
TTTGGTACGAAATGGAAATGTAA
Found at i:37468839 original size:29 final size:31
Alignment explanation
Indices: 37468777--37468841 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 31
37468767 AGCAAAAATT
*
37468777 AATTGAGCTGAATTTGTAAGTATTTGAGCTA
1 AATTGAGCTGAATTTGTAACTATTTGAGCTA
37468808 AATTGAGCTG-ATTTG-AACTCA-TTGAGCTA
1 AATTGAGCTGAATTTGTAACT-ATTTGAGCTA
37468837 AATTG
1 AATTG
37468842 GAAGTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 16 0.50
30 6 0.19
31 10 0.31
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (31 bp):
AATTGAGCTGAATTTGTAACTATTTGAGCTA
Found at i:37476292 original size:14 final size:15
Alignment explanation
Indices: 37476257--37476314 Score: 89
Period size: 15 Copynumber: 3.7 Consensus size: 15
37476247 AACTAGCTTC
*
37476257 TTTTTTTATCACGAAAA
1 TTTTTTTTTCACG--AA
37476274 TTTTTTTTTCACGAA
1 TTTTTTTTTCACGAA
37476289 TTTTTTTTTCACGAA
1 TTTTTTTTTCACGAA
37476304 TTTTTTTTTCA
1 TTTTTTTTTCA
37476315 ACTTGATATC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
15 28 0.70
17 12 0.30
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.60
Consensus pattern (15 bp):
TTTTTTTTTCACGAA
Found at i:37476388 original size:11 final size:12
Alignment explanation
Indices: 37476352--37476385 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
37476342 ATGGAAACCA
37476352 AATTTTTTTTTG
1 AATTTTTTTTTG
37476364 AATTTTTTTTTG
1 AATTTTTTTTTG
37476376 AATTTTTTTT
1 AATTTTTTTT
37476386 GAAGAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:37478045 original size:56 final size:50
Alignment explanation
Indices: 37477930--37478073 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 50
37477920 TCTCACATCG
* * *
37477930 ATGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCA
* * *
37477980 GTGCTAATGCCATGTCCCATACATGGTCTTACGTGGGACCTCTCATAACCTCAATA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT---CTC---A
*
37478036 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGA
37478074 TCTCATTCCC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
50 41 0.53
53 3 0.04
56 34 0.44
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCA
Found at i:37484469 original size:22 final size:22
Alignment explanation
Indices: 37484441--37484500 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
37484431 TATTTAGGAA
37484441 TTGGTACGAAATGGTATAGAAG
1 TTGGTACGAAATGGTATAGAAG
* * *
37484463 TTGGTACGAAATGGTATGGTAT
1 TTGGTACGAAATGGTATAGAAG
*
37484485 TTGGTACGAATTGGTA
1 TTGGTACGAAATGGTA
37484501 ATGGTTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.33
Consensus pattern (22 bp):
TTGGTACGAAATGGTATAGAAG
Found at i:37493572 original size:15 final size:15
Alignment explanation
Indices: 37493535--37493585 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
37493525 TTGAGCGAGA
* *
37493535 AAAAGAAAAATAGAG
1 AAAAGAAAAAGAGTG
*
37493550 -AAACAAAAAGAGTG
1 AAAAGAAAAAGAGTG
*
37493564 AAAAGAAAAAGAATG
1 AAAAGAAAAAGAGTG
37493579 AAAAGAA
1 AAAAGAA
37493586 TGATGAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.06
Consensus pattern (15 bp):
AAAAGAAAAAGAGTG
Found at i:37500630 original size:19 final size:20
Alignment explanation
Indices: 37500606--37500653 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
37500596 GAAAAAAAAA
37500606 TTTTAATTA-AA-TTCTTTTT
1 TTTTAATTACAATTTC-TTTT
*
37500625 TTTTAAGTACGAATTTCTTTT
1 TTTTAATTAC-AATTTCTTTT
37500646 TTTTAATT
1 TTTTAATT
37500654 TCATATAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 8 0.33
21 13 0.54
22 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTTAATTACAATTTCTTTT
Found at i:37505944 original size:13 final size:14
Alignment explanation
Indices: 37505926--37505954 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37505916 AAAATTGCTT
37505926 AAAAATCAAG-AAA
1 AAAAATCAAGTAAA
37505939 AAAAATCAAGTAAA
1 AAAAATCAAGTAAA
37505953 AA
1 AA
37505955 GCCACTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.76, C:0.07, G:0.07, T:0.10
Consensus pattern (14 bp):
AAAAATCAAGTAAA
Found at i:37508301 original size:20 final size:20
Alignment explanation
Indices: 37508276--37508346 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
37508266 TAACGAGCTT
37508276 AATGAGTTGAATTGAGCTCG
1 AATGAGTTGAATTGAGCTCG
* *
37508296 AATGAGCTGACTTGAGCTCG
1 AATGAGTTGAATTGAGCTCG
*
37508316 AATGAGCTT-ACTTGAGCTC-
1 AATGAG-TTGAATTGAGCTCG
37508335 AAGTGAGTTGAA
1 AA-TGAGTTGAA
37508347 CCACATGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.09
20 39 0.89
21 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (20 bp):
AATGAGTTGAATTGAGCTCG
Found at i:37508779 original size:20 final size:20
Alignment explanation
Indices: 37508719--37508780 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
37508709 TAATAATTAG
* * *
37508719 AACATATTTAATAGACTTAA
1 AACATATTTAACACACATAA
* **
37508739 GACATATTAATAACATGCATAA
1 AACATATT--TAACACACATAA
37508761 AACATATTTAACACACATAA
1 AACATATTTAACACACATAA
37508781 TTAAATTTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 17 0.53
22 15 0.47
ACGTcount: A:0.52, C:0.15, G:0.05, T:0.29
Consensus pattern (20 bp):
AACATATTTAACACACATAA
Found at i:37511356 original size:10 final size:10
Alignment explanation
Indices: 37511341--37511375 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
37511331 TCAGCTCCCG
37511341 AGCTCGATTC
1 AGCTCGATTC
37511351 AGCTCGATTC
1 AGCTCGATTC
*
37511361 AGCTCGAATC
1 AGCTCGATTC
37511371 AGCTC
1 AGCTC
37511376 ACTTGAGCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (10 bp):
AGCTCGATTC
Found at i:37511384 original size:20 final size:20
Alignment explanation
Indices: 37511340--37511385 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
37511330 TTCAGCTCCC
*
37511340 GAGCTCGATTCAGCTCGATT
1 GAGCTCGAATCAGCTCGATT
*
37511360 CAGCTCGAATCAGCTC-ACTT
1 GAGCTCGAATCAGCTCGA-TT
37511380 GAGCTC
1 GAGCTC
37511386 ATTTAAGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (20 bp):
GAGCTCGAATCAGCTCGATT
Found at i:37514025 original size:28 final size:29
Alignment explanation
Indices: 37513984--37514045 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
37513974 AGACTTATCT
*
37513984 TTTA-TTCTTGCTG-TTCAATTTCT-TTTC
1 TTTATTTCTTACTGTTTC-ATTTCTATTTC
*
37514011 TTTATTTCTTACTGTTTCATTTTTATTTC
1 TTTATTTCTTACTGTTTCATTTCTATTTC
37514040 TTTATT
1 TTTATT
37514046 CCTACTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.13
28 13 0.43
29 13 0.43
ACGTcount: A:0.13, C:0.15, G:0.05, T:0.68
Consensus pattern (29 bp):
TTTATTTCTTACTGTTTCATTTCTATTTC
Found at i:37520194 original size:21 final size:21
Alignment explanation
Indices: 37520168--37520230 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
37520158 TTGGTATTTG
37520168 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37520189 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
37520210 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
37520231 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37525079 original size:21 final size:21
Alignment explanation
Indices: 37525053--37525115 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
37525043 TTGGTATTTG
37525053 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37525074 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
37525095 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
37525116 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37533340 original size:24 final size:26
Alignment explanation
Indices: 37533304--37533364 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
37533294 TTCAAAACCT
* * *
37533304 TAGCGAATCTCCATCCTCA-TTCACC
1 TAGCCAATTTCCATCATCATTTCACC
*
37533329 TAGCC-ATTTCCATCATCATTTCACT
1 TAGCCAATTTCCATCATCATTTCACC
37533354 TAGCCAATTTC
1 TAGCCAATTTC
37533365 AGCCCTTCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 11 0.37
25 14 0.47
26 5 0.17
ACGTcount: A:0.25, C:0.34, G:0.07, T:0.34
Consensus pattern (26 bp):
TAGCCAATTTCCATCATCATTTCACC
Found at i:37538102 original size:23 final size:22
Alignment explanation
Indices: 37538051--37538102 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
37538041 CCTCGTCTTT
*
37538051 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
37538073 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
37538096 TTCTTTT
1 TTCTTTT
37538103 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:37543386 original size:32 final size:32
Alignment explanation
Indices: 37543312--37543390 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 32
37543302 AACAGCAGCA
* * * *
37543312 AAAACACATTAAGTAGCAGCATTAAATTCGTC
1 AAAACACATTAAATAACAGCATTAAATACGAC
* * * *
37543344 CAGACGCATTAAATAACAGCATTAACTACGAC
1 AAAACACATTAAATAACAGCATTAAATACGAC
37543376 AAAACACATTAAATA
1 AAAACACATTAAATA
37543391 GACTTAAGAC
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.48, C:0.20, G:0.10, T:0.22
Consensus pattern (32 bp):
AAAACACATTAAATAACAGCATTAAATACGAC
Done.