Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 13 of 218
Found at i:4829671 original size:454 final size:454
Alignment explanation
Indices: 4829016--4842169 Score: 26272
Period size: 454 Copynumber: 29.0 Consensus size: 454
4829006 ATCAAGCCTA
4829016 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4829081 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4829146 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4829211 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4829276 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4829341 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4829406 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4829470 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4829535 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4829600 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4829665 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4829730 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4829795 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4829860 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4829924 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4829989 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4830054 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4830119 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4830184 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4830249 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4830314 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4830378 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4830443 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4830508 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4830573 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4830638 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4830703 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4830768 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4830832 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4830897 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4830962 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4831027 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4831092 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4831157 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4831222 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4831286 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
*
4831351 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGCG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4831416 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4831481 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4831546 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4831611 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4831676 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4831740 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4831805 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4831870 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4831935 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4832000 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4832065 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4832130 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4832194 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4832259 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4832324 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4832389 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4832454 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4832519 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4832584 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4832648 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4832713 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4832778 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4832843 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4832908 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4832973 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4833038 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4833102 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4833167 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4833232 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4833297 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4833362 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4833427 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4833492 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4833556 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4833621 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4833686 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4833751 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4833816 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4833881 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4833946 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4834010 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4834075 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4834140 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4834205 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4834270 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4834335 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4834400 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4834464 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4834529 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4834594 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4834659 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4834724 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4834789 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4834854 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4834918 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4834983 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4835048 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4835113 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4835178 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4835243 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4835308 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4835372 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4835437 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4835502 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4835567 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4835632 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4835697 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4835762 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4835826 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4835891 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4835956 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4836021 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4836086 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4836151 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4836216 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4836280 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4836345 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4836410 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4836475 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4836540 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4836605 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4836670 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4836734 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4836799 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4836864 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4836929 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4836994 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4837059 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4837124 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4837188 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4837253 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4837318 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4837383 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4837448 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4837513 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4837578 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4837642 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4837707 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4837772 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4837837 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4837902 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4837967 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4838032 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4838096 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4838161 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4838226 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4838291 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4838356 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4838421 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4838486 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4838550 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4838615 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4838680 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4838745 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4838810 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4838875 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4838940 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4839004 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
*
4839069 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGCG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4839134 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4839199 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4839264 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4839329 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4839394 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4839458 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4839523 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4839588 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4839653 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4839718 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4839783 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4839848 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4839912 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4839977 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4840042 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4840107 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4840172 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4840237 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4840302 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4840366 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4840431 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4840496 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4840561 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4840626 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4840691 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4840756 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4840820 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
*
4840885 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGCG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4840950 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4841015 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4841080 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4841145 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4841210 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4841274 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
*
4841339 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGCG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4841404 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4841469 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4841534 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4841599 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4841664 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
4841728 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
1 CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
4841793 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
66 AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
4841858 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
131 ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
4841923 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
196 TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
4841988 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
261 ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
4842053 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
326 ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
4842118 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAA
391 TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAA
4842170 GAAATAAAAT
Statistics
Matches: 12694, Mismatches: 6, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
454 12694 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (454 bp):
CAGTGATGCTCACTTATTCTACAACATAATGGAATAACTTCCATGCTTCCAAATGATATCTTACT
AGTTGAATTATTTTTAGTTTTCTCAAACTCAATGATTAAAAATGATGCATATAAAAGGTCCAGTG
ACCACAGCTCAAAATAAGAGAGCTGCAAGATTGCTACAATCAACTATTAACCATTAAAGAAAATG
TAAGCAATTGAAGCCGTCAATCAAAACAATCGAAACTAAGAACATTATTCAATGGACTATCCTCG
ATTCCAAACATATTGGATGAAGGCATTTTTCAATTGTTTCTTCATAATCATATATCAATTATGCA
ACAATAGAAGCAAATTAATAGTACCAAACACGTTCGGTCATTGTTAAATGATTCAGTATTCTAAT
TTCAAGAAACAGATAATTGCAAGAGCTGAAAAGCTTTAAACAAGCAAAATAATGGAATAACTTC
Found at i:4842851 original size:2 final size:2
Alignment explanation
Indices: 4842844--4842899 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
4842834 GTAAACTCGT
*
4842844 GA GA GA GA GA GA GA GA GA GA GA GG GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
4842886 GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA
4842900 AACGGACCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:4845046 original size:13 final size:13
Alignment explanation
Indices: 4844994--4845046 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
4844984 AGTTCTTCAT
4844994 TACTTTTGAAAAG
1 TACTTTTGAAAAG
*
4845007 TA-TTGTGGAAAAG
1 TACTT-TTGAAAAG
* *
4845020 TGCTTTTGAGAAG
1 TACTTTTGAAAAG
*
4845033 TACTTTTTAAAAG
1 TACTTTTGAAAAG
4845046 T
1 T
4845047 TTAGTTTAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
12 2 0.06
13 27 0.87
14 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.40
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:4845543 original size:13 final size:13
Alignment explanation
Indices: 4845533--4845557 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4845523 TTTCAAAAGT
4845533 ACTTTTGAAAAAC
1 ACTTTTGAAAAAC
4845546 ACTTTTGAAAAA
1 ACTTTTGAAAAA
4845558 TTAAAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTGAAAAAC
Found at i:4855678 original size:16 final size:17
Alignment explanation
Indices: 4855659--4855701 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
4855649 TAAAATTATT
4855659 AAATATTAAAA-TAAAA
1 AAATATTAAAATTAAAA
4855675 AAATA-TAAATATTAAAA
1 AAATATTAAA-ATTAAAA
4855692 AAA-ATTAAAA
1 AAATATTAAAA
4855702 ATAATATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 4 0.17
16 8 0.33
17 12 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATATTAAAATTAAAA
Found at i:4855708 original size:22 final size:22
Alignment explanation
Indices: 4855658--4855705 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
4855648 ATAAAATTAT
*
4855658 TAAATATTAAAATAAAAAAATA
1 TAAATATTAAAATAAAAAAAAA
4855680 TAAATATTAAAA-AAAATTAAAAA
1 TAAATATTAAAATAAAA--AAAAA
4855703 TAA
1 TAA
4855706 TATGGACAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 12 0.52
23 7 0.30
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAATATTAAAATAAAAAAAAA
Found at i:4866794 original size:17 final size:17
Alignment explanation
Indices: 4866772--4866808 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
4866762 AAAAATATAT
4866772 AAATATATAATAAT-TAG
1 AAATATAT-ATAATCTAG
4866789 AAATATATATAATCTAG
1 AAATATATATAATCTAG
4866806 AAA
1 AAA
4866809 AAACATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (17 bp):
AAATATATATAATCTAG
Found at i:4874226 original size:22 final size:22
Alignment explanation
Indices: 4874183--4874226 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
4874173 TTTATGTGAT
*
4874183 ATAAATTACAAAATATATAAAA
1 ATAAATTACAAAATATACAAAA
4874205 ATAAATT-CAAAATATTACAAAA
1 ATAAATTACAAAATA-TACAAAA
4874227 GTATAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (22 bp):
ATAAATTACAAAATATACAAAA
Found at i:4879351 original size:18 final size:18
Alignment explanation
Indices: 4879326--4879375 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
4879316 TCACCTAAAT
* *
4879326 CCAACCCAATCCAAGTAT
1 CCAACCCAATCCAACTAC
* *
4879344 CTAACCCAACCCAACTAC
1 CCAACCCAATCCAACTAC
4879362 CCAACCCAATCCAA
1 CCAACCCAATCCAA
4879376 TCATAAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.40, C:0.46, G:0.02, T:0.12
Consensus pattern (18 bp):
CCAACCCAATCCAACTAC
Found at i:4879530 original size:9 final size:9
Alignment explanation
Indices: 4879516--4879591 Score: 64
Period size: 9 Copynumber: 8.4 Consensus size: 9
4879506 GTAGTGATTC
4879516 AATTCGGTT
1 AATTCGGTT
*
4879525 AATTCGGAT
1 AATTCGGTT
* *
4879534 AATTTGATT
1 AATTCGGTT
* *
4879543 AATTTGGGT
1 AATTCGGTT
*
4879552 AATTCAGTT
1 AATTCGGTT
4879561 AATTCGAG-T
1 AATTCG-GTT
**
4879570 AATTTAGTT
1 AATTCGGTT
4879579 AATTCGGTT
1 AATTCGGTT
4879588 AATT
1 AATT
4879592 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
8 1 0.02
9 49 0.96
10 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.18, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:4879544 original size:18 final size:18
Alignment explanation
Indices: 4879522--4879592 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
4879512 ATTCAATTCG
4879522 GTTAATTCGGATAATTT-
1 GTTAATTCGGATAATTTA
* * *
4879539 GATTAATTTGGGTAATTCA
1 G-TTAATTCGGATAATTTA
4879558 GTTAATTC-GAGTAATTTA
1 GTTAATTCGGA-TAATTTA
*
4879576 GTTAATTCGGTTAATTT
1 GTTAATTCGGATAATTT
4879593 TTAACCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
17 2 0.05
18 39 0.91
19 2 0.05
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.46
Consensus pattern (18 bp):
GTTAATTCGGATAATTTA
Found at i:4879554 original size:27 final size:27
Alignment explanation
Indices: 4879510--4879592 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
4879500 AATTATGTAG
* *
4879510 TGATTCAATTCGGTTAATTCGGATAATT
1 TGATT-AATTTGGTTAATTCGGTTAATT
* *
4879538 TGATTAATTTGGGTAATTCAGTTAATT
1 TGATTAATTTGGTTAATTCGGTTAATT
* * *
4879565 CGAGTAATTTAGTTAATTCGGTTAATT
1 TGATTAATTTGGTTAATTCGGTTAATT
4879592 T
1 T
4879593 TTAACCAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
27 40 0.89
28 5 0.11
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (27 bp):
TGATTAATTTGGTTAATTCGGTTAATT
Found at i:4881687 original size:5 final size:5
Alignment explanation
Indices: 4881677--4881747 Score: 63
Period size: 5 Copynumber: 13.4 Consensus size: 5
4881667 AGCTACCCCA
* *
4881677 TTTAT TTTAT TTTAT TTTAT TATTATT TGTTAT ATTAT TTAAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT T-TTA-T T-TTAT TTTAT TTTAT TTTAT
*
4881725 TTTCT TAATT-T TTTAT TTTAT TT
1 TTTAT T--TTAT TTTAT TTTAT TT
4881748 ATTCATTATT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
4 2 0.04
5 40 0.73
6 6 0.11
7 7 0.13
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:4881934 original size:12 final size:11
Alignment explanation
Indices: 4881872--4881934 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 11
4881862 ATTAAGTTTA
4881872 CTTTTT-TTTT
1 CTTTTTATTTT
*
4881882 GTTTTTATTTT
1 CTTTTTATTTT
*
4881893 TTATTTTATTTT
1 CT-TTTTATTTT
4881905 CTTATTTATCTTT
1 CTT-TTTAT-TTT
4881918 CTTTTTAATTTT
1 CTTTTT-ATTTT
*
4881930 GTTTT
1 CTTTT
4881935 AGTTGCTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
10 5 0.11
11 6 0.14
12 25 0.57
13 8 0.18
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.79
Consensus pattern (11 bp):
CTTTTTATTTT
Found at i:4886610 original size:20 final size:18
Alignment explanation
Indices: 4886591--4886640 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 18
4886581 TAAAATTTAT
4886591 TAAAATTATAAAAGACTTA
1 TAAAATTATAAAAGA-TTA
*
4886610 TAGAATATTATAAAATATTA
1 TA-AA-ATTATAAAAGATTA
4886630 T-AAATTATAAA
1 TAAAATTATAAA
4886641 TATATATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 8 0.29
18 2 0.07
19 2 0.07
20 6 0.21
21 10 0.36
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (18 bp):
TAAAATTATAAAAGATTA
Found at i:4886626 original size:10 final size:10
Alignment explanation
Indices: 4886571--4886633 Score: 60
Period size: 10 Copynumber: 6.4 Consensus size: 10
4886561 GTTTTATAAT
4886571 TAAAATCATT-
1 TAAAAT-ATTA
4886581 TAAAAT-TTA
1 TAAAATATTA
*
4886590 TTAAA-ATTA
1 TAAAATATTA
*
4886599 TAAAAGACTTA
1 TAAAATA-TTA
*
4886610 TAGAATATTA
1 TAAAATATTA
4886620 TAAAATATTA
1 TAAAATATTA
4886630 TAAA
1 TAAA
4886634 TTATAAATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.05
9 11 0.25
10 23 0.52
11 8 0.18
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (10 bp):
TAAAATATTA
Found at i:4886638 original size:17 final size:17
Alignment explanation
Indices: 4886588--4886650 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 17
4886578 ATTTAAAATT
4886588 TATTA-AAATTATAAAA
1 TATTATAAATTATAAAA
*
4886604 GACTTATAGAATATTATAAAA
1 TA-TTAT--AA-ATTATAAAA
4886625 TATTATAAATTAT-AAA
1 TATTATAAATTATAAAA
4886641 TATATATAAA
1 TAT-TATAAA
4886651 AGTGCAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
16 7 0.18
17 14 0.36
18 2 0.05
20 6 0.15
21 10 0.26
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (17 bp):
TATTATAAATTATAAAA
Found at i:4886793 original size:9 final size:9
Alignment explanation
Indices: 4886736--4886796 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
4886726 AAGTTATGAA
*
4886736 AAAAAATAT
1 AAAAATTAT
*
4886745 TAAAATTAAT
1 AAAAATT-AT
* *
4886755 AAAATTTAC
1 AAAAATTAT
4886764 AAAATATTAT
1 AAAA-ATTAT
**
4886774 AAAAACCAT
1 AAAAATTAT
4886783 AAAAATTAT
1 AAAAATTAT
4886792 AAAAA
1 AAAAA
4886797 AAAACTAAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
9 25 0.64
10 14 0.36
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:4887205 original size:20 final size:20
Alignment explanation
Indices: 4887162--4887220 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
4887152 TACAATATTT
*
4887162 TAATTCATATAACTTTTTTAA
1 TAATTTATATAA-TTTTTTAA
4887183 TAATTTATATAATTTTTGT-A
1 TAATTTATATAATTTTT-TAA
4887203 TAATTTATAATAATTTTT
1 TAATTTAT-ATAATTTTT
4887221 ATAAATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
20 14 0.40
21 21 0.60
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (20 bp):
TAATTTATATAATTTTTTAA
Found at i:4887206 original size:11 final size:10
Alignment explanation
Indices: 4887169--4887259 Score: 57
Period size: 10 Copynumber: 9.1 Consensus size: 10
4887159 TTTTAATTCA
4887169 TATAACTTTTT
1 TATAA-TTTTT
*
4887180 TAATAA-TTTA
1 T-ATAATTTTT
4887190 TATAATTTTT
1 TATAATTTTT
*
4887200 GTATAATTTAT
1 -TATAATTTTT
*
4887211 AATAA-TTTT
1 TATAATTTTT
*
4887220 TATAAATTTT
1 TATAATTTTT
*
4887230 TAGTCA---TT
1 TA-TAATTTTT
4887238 TATAATATTTT
1 TATAAT-TTTT
4887249 TATAATTTTT
1 TATAATTTTT
4887259 T
1 T
4887260 GCACTTTTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
7 2 0.03
8 4 0.06
9 11 0.17
10 22 0.35
11 20 0.32
12 4 0.06
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
TATAATTTTT
Found at i:4887214 original size:30 final size:30
Alignment explanation
Indices: 4887180--4887259 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
4887170 ATAACTTTTT
*
4887180 TAATAATTTATATAATTTTTGTA-TAATTTA
1 TAATAATTTTTATAATTTTT-TAGTAATTTA
* *
4887210 TAATAATTTTTATAAATTTTTAGTCATTTA
1 TAATAATTTTTATAATTTTTTAGTAATTTA
4887240 TAAT-ATTTTTATAATTTTTT
1 TAATAATTTTTATAATTTTTT
4887260 GCACTTTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
29 17 0.38
30 28 0.62
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (30 bp):
TAATAATTTTTATAATTTTTTAGTAATTTA
Found at i:4887227 original size:20 final size:20
Alignment explanation
Indices: 4887162--4887258 Score: 76
Period size: 20 Copynumber: 4.8 Consensus size: 20
4887152 TACAATATTT
*
4887162 TAATTCATATAACTTTTT-TAA
1 TAATTTATATAA-TTTTTAT-A
*
4887183 TAATTTATATAATTTTTGTA
1 TAATTTATATAATTTTTATA
4887203 TAATTTATAATAATTTTTATA
1 TAATTTAT-ATAATTTTTATA
* * *
4887224 -AATTTTTAGTCATTTATA-A
1 TAATTTATA-TAATTTTTATA
*
4887243 T-ATTTTTATAATTTTT
1 TAATTTATATAATTTTT
4887259 TGCACTTTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
18 6 0.09
19 9 0.14
20 27 0.42
21 23 0.35
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (20 bp):
TAATTTATATAATTTTTATA
Found at i:4887304 original size:30 final size:27
Alignment explanation
Indices: 4887240--4887306 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 27
4887230 TAGTCATTTA
* *
4887240 TAATATTTTTATAATTTTTTGCACTTT
1 TAATATTTTTACAATTTTTTGAACTTT
4887267 TATATATTTTTACATATTCTTTTGTAACTTT
1 TA-ATATTTTTACA-ATT-TTTTG-AACTTT
4887298 TAATATTTT
1 TAATATTTT
4887307 AATTATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 2 0.06
28 10 0.29
29 3 0.09
30 12 0.35
31 7 0.21
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (27 bp):
TAATATTTTTACAATTTTTTGAACTTT
Found at i:4901550 original size:14 final size:14
Alignment explanation
Indices: 4901531--4901577 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
4901521 TTAGCTTACC
4901531 ATTTTAGTTTATAT
1 ATTTTAGTTTATAT
*
4901545 ATTTTAATTTGATAT
1 ATTTTAGTTT-ATAT
* *
4901560 -TTTTTGTTTTTAT
1 ATTTTAGTTTATAT
4901573 ATTTT
1 ATTTT
4901578 TAAAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 3 0.11
14 20 0.74
15 4 0.15
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.70
Consensus pattern (14 bp):
ATTTTAGTTTATAT
Found at i:4902000 original size:27 final size:27
Alignment explanation
Indices: 4901961--4902041 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
4901951 GGGGTCGGAT
*
4901961 GGCGCCT-ATCAGATAGGCGCCAATGAA
1 GGCGCCTCA-CAGAGAGGCGCCAATGAA
*
4901988 GGCGCCTCACAGAGAGGCGCCAATAAA
1 GGCGCCTCACAGAGAGGCGCCAATGAA
* *
4902015 GGTGCCTCATAGAGAGGCGCCAATGAA
1 GGCGCCTCACAGAGAGGCGCCAATGAA
4902042 TATTGTAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.31, T:0.12
Consensus pattern (27 bp):
GGCGCCTCACAGAGAGGCGCCAATGAA
Found at i:4902061 original size:19 final size:19
Alignment explanation
Indices: 4902037--4902378 Score: 127
Period size: 19 Copynumber: 16.7 Consensus size: 19
4902027 AGAGGCGCCA
4902037 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
*
4902056 ATGAATATTGTAATTATTTT
1 ATGAATATTGTAATT-TTGT
4902076 AT-AATTAAATT-TATATTTATAGTT
1 ATGAA-T--ATTGTA-ATTT-T-G-T
* * *
4902100 TTGGAT-TAGT-ATTTTGT
1 ATGAATATTGTAATTTTGT
4902117 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
4902136 ATGAATATTGTAATTTTGTAATTTTGT
1 ATG-A-A---T-A--TTGTAATTTTGT
* *
4902163 ATGAATATTGTAATGTCGGGATAT
1 ATGAATATTGTAAT-T----TTGT
4902187 ATTGTAATATTGTAATTTTTTGT
1 A-TG-AATATTGTAA--TTTTGT
*
4902210 ATGAATATTGTAATTATTTT
1 ATGAATATTGTAATT-TTGT
4902230 AT-AATTAAATTTGT-ATTTATAGTT
1 ATGAA-T--A-TTGTAATTT-T-G-T
* * *
4902254 TTGGAT-TAGT-ATTTTGT
1 ATGAATATTGTAATTTTGT
4902271 ATGAATATTGTAATTTTTTGT
1 ATGAATATTGTAA--TTTTGT
4902292 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
*
4902311 ATGAATATTGTAA-TAT-T
1 ATGAATATTGTAATTTTGT
*
4902328 AT-AATATTGTATGAATATTG-
1 ATGAATATTG--T-AATTTTGT
*
4902348 -T-AATTTTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
4902365 ATGAATATTGTAAT
1 ATGAATATTGTAAT
4902379 GTCGGGATAT
Statistics
Matches: 247, Mismatches: 26, Indels: 100
0.66 0.07 0.27
Matches are distributed among these distances:
16 13 0.05
17 14 0.06
18 12 0.05
19 79 0.32
20 26 0.11
21 36 0.15
22 16 0.06
23 7 0.03
24 10 0.04
25 6 0.02
26 11 0.04
27 16 0.06
28 1 0.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.53
Consensus pattern (19 bp):
ATGAATATTGTAATTTTGT
Found at i:4902155 original size:27 final size:27
Alignment explanation
Indices: 4902124--4902378 Score: 108
Period size: 27 Copynumber: 10.0 Consensus size: 27
4902114 TGTATGAATA
4902124 TTGTAATTTTGTATGAATATTGTAATT
1 TTGTAATTTTGTATGAATATTGTAATT
4902151 TTGTAATTTTGTATGAATATTGTAA--
1 TTGTAATTTTGTATGAATATTGTAATT
** * *
4902176 -TG----TCGGGAT--ATATTGTAATA
1 TTGTAATTTTGTATGAATATTGTAATT
4902196 TTGTAATTTTTTGTATGAATATTGTAATT
1 TTGTAA--TTTTGTATGAATATTGTAATT
* **
4902225 ATT-TTATAAT-TA--AAT-TTGT-A-T
1 -TTGTAATTTTGTATGAATATTGTAATT
* * * * * *
4902246 TTATAGTTTTGGATTAGTATTTTGTATGAATA
1 TTGTAATTTTGTA-T-GAATATTG--T-AATT
4902278 TTGTAATTTTTTGTATGAATATTGTAATT
1 TTGTAA--TTTTGTATGAATATTGTAATT
*
4902307 TTGT-A-------TGAATATTGTAATA
1 TTGTAATTTTGTATGAATATTGTAATT
* *
4902326 TTATAATATTGTATGAATATTGTAATT
1 TTGTAATTTTGTATGAATATTGTAATT
4902353 TTGTAATTTTGTATGAATATTGTAAT
1 TTGTAATTTTGTATGAATATTGTAAT
4902379 GTCGGGATAT
Statistics
Matches: 166, Mismatches: 28, Indels: 68
0.63 0.11 0.26
Matches are distributed among these distances:
18 9 0.05
19 16 0.10
20 7 0.04
21 6 0.04
22 2 0.01
23 4 0.02
24 5 0.03
26 4 0.02
27 71 0.43
28 1 0.01
29 20 0.12
30 3 0.02
31 1 0.01
32 10 0.06
33 1 0.01
34 6 0.04
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.53
Consensus pattern (27 bp):
TTGTAATTTTGTATGAATATTGTAATT
Found at i:4902290 original size:21 final size:20
Alignment explanation
Indices: 4902265--4902426 Score: 108
Period size: 19 Copynumber: 8.1 Consensus size: 20
4902255 TGGATTAGTA
4902265 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAA-T
4902286 TTTTGTATGAATATTGTAA-
1 TTTTGTATGAATATTGTAAT
4902305 TTTTGTATGAATATTGTAA-
1 TTTTGTATGAATATTGTAAT
* *
4902324 -TAT-TAT-AATATTGTATGAA
1 TTTTGTATGAATATTGTA--AT
* *
4902343 TATTG--T-AATTTTGTAA-
1 TTTTGTATGAATATTGTAAT
4902359 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
** *
4902379 GTCGGGATATATTGTAATATTGTAATT
1 -T---TTTGTA-TG-AATATTGTAA-T
4902406 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
4902426 T
1 T
4902427 ATTTTATAAT
Statistics
Matches: 113, Mismatches: 12, Indels: 33
0.72 0.08 0.21
Matches are distributed among these distances:
16 13 0.12
17 4 0.04
18 4 0.04
19 37 0.33
20 3 0.03
21 30 0.27
22 2 0.02
23 3 0.03
24 3 0.03
25 2 0.02
26 11 0.10
27 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.15, T:0.52
Consensus pattern (20 bp):
TTTTGTATGAATATTGTAAT
Found at i:4902325 original size:8 final size:8
Alignment explanation
Indices: 4902295--4902404 Score: 58
Period size: 8 Copynumber: 12.4 Consensus size: 8
4902285 TTTTTGTATG
4902295 AATATTGT
1 AATATTGT
*
4902303 AATTTTGTAT
1 AATATTG--T
4902313 GAATATTGT
1 -AATATTGT
*
4902322 AATATTAT
1 AATATTGT
4902330 AATATTGTAT
1 AATATTG--T
4902340 GAATATTGT
1 -AATATTGT
*
4902349 AATTTTGT
1 AATATTGT
*
4902357 AATTTTGTAT
1 AATATTG--T
4902367 GAATATTGT
1 -AATATTGT
* * *
4902376 AATGTCGGG
1 AATAT-TGT
4902385 ATATATTGT
1 A-ATATTGT
4902394 AATATTGT
1 AATATTGT
4902402 AAT
1 AAT
4902405 TTTTTGTATG
Statistics
Matches: 79, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
8 47 0.59
9 7 0.09
10 6 0.08
11 19 0.24
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (8 bp):
AATATTGT
Found at i:4902500 original size:60 final size:60
Alignment explanation
Indices: 4902419--4902540 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
4902409 TGTATGAATA
* * * * *
4902419 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
*
4902479 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
4902539 TT
1 TT
4902541 AGTTTAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 6 0.11
60 49 0.89
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:4902617 original size:37 final size:38
Alignment explanation
Indices: 4902573--4902653 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
4902563 CATATAAAGT
4902573 TTATAAAAAAA-TAAAAATAATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATAATTTTATTAAAAGTTTAA
*
4902610 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATAATTTTATTAAAAGTTTAA
4902648 TTATAA
1 TTATAA
4902654 CTGACTTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 11 0.26
38 31 0.74
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATAATTTTATTAAAAGTTTAA
Found at i:4902731 original size:15 final size:15
Alignment explanation
Indices: 4902690--4902731 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
4902680 GTTAACTAAT
*
4902690 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
4902705 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
4902721 TTAAATTTTAT
1 TTAAATTTTAT
4902732 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:4902893 original size:21 final size:21
Alignment explanation
Indices: 4902862--4903027 Score: 95
Period size: 27 Copynumber: 7.2 Consensus size: 21
4902852 AATTAATTAT
4902862 AAAATAATTACAATATTCATAC
1 AAAA-AATTACAATATTCATAC
4902884 AAAAAATTACAATATTACAATATATC
1 AAAAAATTACAATATT-C---ATA-C
*** *
4902910 CCGACATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
4902931 ---AAATTACAATATTACAATATTC
1 AAAAAATTACAATATT-C-ATA--C
*
4902953 ATACAAAATTATAATATTACAATATTC
1 A-A-AAAATTACAATATT-C-ATA--C
4902980 AAACAAAATTACAATATTCATAC
1 -AA-AAAATTACAATATTCATAC
*
4903003 AAAAAATTATAATATTCATAC
1 AAAAAATTACAATATTCATAC
4903024 AAAA
1 AAAA
4903028 TACTAATACA
Statistics
Matches: 121, Mismatches: 8, Indels: 31
0.76 0.05 0.19
Matches are distributed among these distances:
18 12 0.10
19 1 0.01
20 3 0.02
21 35 0.29
22 11 0.09
23 1 0.01
25 7 0.06
26 14 0.12
27 36 0.30
28 1 0.01
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.31
Consensus pattern (21 bp):
AAAAAATTACAATATTCATAC
Found at i:4902902 original size:8 final size:8
Alignment explanation
Indices: 4902889--4902997 Score: 58
Period size: 8 Copynumber: 12.4 Consensus size: 8
4902879 CATACAAAAA
4902889 ATTACAAT
1 ATTACAAT
4902897 ATTACAAT
1 ATTACAAT
* * *
4902905 ATATCCCGAC
1 AT-T-ACAAT
4902915 ATTACAAT
1 ATTACAAT
4902923 ATTCATACAA-
1 A-T--TACAAT
4902933 ATTACAAT
1 ATTACAAT
4902941 ATTACAAT
1 ATTACAAT
*
4902949 ATTCATACAAA
1 A-T--TACAAT
*
4902960 ATTATAAT
1 ATTACAAT
4902968 ATTACAAT
1 ATTACAAT
*
4902976 ATTCAAACAAA
1 ATT---ACAAT
4902987 ATTACAAT
1 ATTACAAT
4902995 ATT
1 ATT
4902998 CATACAAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
7 5 0.06
8 43 0.56
9 5 0.06
10 6 0.08
11 18 0.23
ACGTcount: A:0.50, C:0.16, G:0.01, T:0.34
Consensus pattern (8 bp):
ATTACAAT
Found at i:4902963 original size:19 final size:19
Alignment explanation
Indices: 4902915--4903028 Score: 89
Period size: 19 Copynumber: 6.1 Consensus size: 19
4902905 ATATCCCGAC
4902915 ATTACAATATTCATAC-AA
1 ATTACAATATTCATACAAA
4902933 ATTACAATA-T--TACAATA
1 ATTACAATATTCATACAA-A
* * *
4902950 TTCATACAAAATT-AT--AAT
1 AT--TACAATATTCATACAAA
*
4902968 ATTACAATATTCAAACAAA
1 ATTACAATATTCATACAAA
4902987 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
*
4903008 ATTATAATATTCATACAAA
1 ATTACAATATTCATACAAA
4903027 AT
1 AT
4903029 ACTAATACAA
Statistics
Matches: 76, Mismatches: 9, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
15 3 0.04
16 9 0.12
17 4 0.05
18 10 0.13
19 30 0.39
20 1 0.01
21 19 0.25
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:4902969 original size:27 final size:27
Alignment explanation
Indices: 4902915--4902997 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
4902905 ATATCCCGAC
4902915 ATTACAATATTCATAC-AAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
*
4902941 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
*
4902968 ATTACAATATTCAAACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
4902995 ATT
1 ATT
4902998 CATACAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 16 0.30
27 37 0.70
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAT
Found at i:4903034 original size:19 final size:20
Alignment explanation
Indices: 4902968--4903035 Score: 81
Period size: 19 Copynumber: 3.5 Consensus size: 20
4902958 AAATTATAAT
*
4902968 ATTAC-AATATTCAAACAAA
1 ATTACTAATATTCATACAAA
4902987 ATTAC-AATATTCATACAAAAA
1 ATTACTAATATTCATAC--AAA
4903008 ATTA-TAATATTCATACAAA
1 ATTACTAATATTCATACAAA
4903027 A-TACTAATA
1 ATTACTAATA
4903036 CAAAACTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
18 2 0.05
19 24 0.55
21 18 0.41
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (20 bp):
ATTACTAATATTCATACAAA
Found at i:4903053 original size:67 final size:71
Alignment explanation
Indices: 4902915--4903053 Score: 157
Period size: 67 Copynumber: 2.0 Consensus size: 71
4902905 ATATCCCGAC
* * *
4902915 ATTACAATATTCATACAAATTACAATATTACAATATTCATACAAAATTATAATATTACAATATTC
1 ATTACAATATTCATACAAA-TACAATATTACAATATTCATACAAAATTATAATATCAAAATATTA
4902980 AAACAAA
65 AAACAAA
*
4902987 ATTACAATATTCATAC-AA-A-AA-ATTATAATATTCATACAAAA-TACTAATA-CAAAACTA-T
1 ATTACAATATTCATACAAATACAATATTACAATATTCATACAAAATTA-TAATATCAAAA-TATT
4903045 AAATACAAA
64 AAA-ACAAA
4903054 TTTAATTATA
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
66 8 0.13
67 31 0.52
68 2 0.03
69 1 0.02
71 2 0.03
72 16 0.27
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (71 bp):
ATTACAATATTCATACAAATACAATATTACAATATTCATACAAAATTATAATATCAAAATATTAA
AACAAA
Found at i:4904114 original size:25 final size:27
Alignment explanation
Indices: 4904050--4904119 Score: 76
Period size: 25 Copynumber: 2.7 Consensus size: 27
4904040 CATATATATT
4904050 TATATATATT--ATAAAAACATGCAAG
1 TATATATATTAAATAAAAACATGCAAG
* *
4904075 TATACTAGATATAAAAAAAAACATGC-A-
1 TATA-TATAT-TAAATAAAAACATGCAAG
4904102 TATATATATTAAATAAAA
1 TATATATATTAAATAAAA
4904120 GAACGACGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 12 0.32
26 8 0.22
27 5 0.14
28 1 0.03
29 11 0.30
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30
Consensus pattern (27 bp):
TATATATATTAAATAAAAACATGCAAG
Found at i:4904117 original size:29 final size:29
Alignment explanation
Indices: 4904032--4904119 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
4904022 CGTGCAACGT
* *
4904032 AAAACATGCATATATAT-TTATATATATTATA
1 AAAACATGCATATATATATTA-A-ATA-AAAA
* *
4904063 AAAACATGCA-AGTATACTA-GATATAAAAA
1 AAAACATGCATA-TATA-TATTAAATAAAAA
4904092 AAAACATGCATATATATATTAAATAAAA
1 AAAACATGCATATATATATTAAATAAAA
4904120 GAACGACGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
28 2 0.04
29 23 0.50
30 5 0.11
31 14 0.30
32 2 0.04
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.31
Consensus pattern (29 bp):
AAAACATGCATATATATATTAAATAAAAA
Found at i:4904149 original size:3 final size:3
Alignment explanation
Indices: 4904137--4904172 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
4904127 GCATGTATGT
*
4904137 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4904173 AAATCATAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:4905402 original size:17 final size:17
Alignment explanation
Indices: 4905380--4905412 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4905370 AAATATATAT
4905380 AAAAAAATATT-TTATTC
1 AAAAAAA-ATTATTATTC
4905397 AAAAAAAATTATTATT
1 AAAAAAAATTATTATT
4905413 TTTTTATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAAAAAATTATTATTC
Found at i:4907800 original size:23 final size:23
Alignment explanation
Indices: 4907751--4907884 Score: 157
Period size: 23 Copynumber: 6.0 Consensus size: 23
4907741 CCTGATCAGT
* *
4907751 ATACGACACA-TAAGTGTCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
4907771 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
4907794 ATACGACACACTAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
4907817 ATACGACACATAAAGTGCCTGAT
1 ATACGACACACAAAGTGCCTGAA
*
4907840 ATACGACACATAAAGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
4907863 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
4907885 TCGGCATAGC
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
20 10 0.10
21 7 0.07
23 85 0.83
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:4907881 original size:69 final size:66
Alignment explanation
Indices: 4907751--4907884 Score: 180
Period size: 69 Copynumber: 2.0 Consensus size: 66
4907741 CCTGATCAGT
* * * *
4907751 ATACGACACATAAGTGTCTGATACGACACACGAGGTGCCTGAAATACGACACACTAGGTGCCTGA
1 ATACGACACATAAGTGCCTGATACGACACACAAAGTGCCTGAAATACGACACACTAAGTGCCTGA
4907816 A
66 A
*
4907817 ATACGACACATAAAGTGCCTGATATACGACACATAAAGTGCCTGAAATACGACACA-TAAAGTGC
1 ATACGACACAT-AAGTGCCTG--ATACGACACACAAAGTGCCTGAAATACGACACACT-AAGTGC
4907881 CTGA
62 CTGA
4907885 TCGGCATAGC
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
66 11 0.19
67 8 0.14
68 1 0.02
69 39 0.66
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (66 bp):
ATACGACACATAAGTGCCTGATACGACACACAAAGTGCCTGAAATACGACACACTAAGTGCCTGA
A
Found at i:4907885 original size:46 final size:45
Alignment explanation
Indices: 4907750--4907885 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 45
4907740 ACCTGATCAG
* ** *
4907750 TATACGACACATAAGTGTCTG--ATACGACACACGAGGTGCCTGA
1 TATACGACACATAAGTGCCTGAAATACGACACATAAAGTGCCTGA
* *
4907793 AATACGACACACTAGGTGCCTGAAATACGACACATAAAGTGCCTGA
1 TATACGACACA-TAAGTGCCTGAAATACGACACATAAAGTGCCTGA
4907839 TATACGACACATAAAGTGCCTGAAATACGACACATAAAGTGCCTGA
1 TATACGACACAT-AAGTGCCTGAAATACGACACATAAAGTGCCTGA
4907885 T
1 T
4907886 CGGCATAGCC
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
43 10 0.12
44 8 0.10
45 1 0.01
46 62 0.77
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (45 bp):
TATACGACACATAAGTGCCTGAAATACGACACATAAAGTGCCTGA
Found at i:4911972 original size:47 final size:46
Alignment explanation
Indices: 4911834--4911973 Score: 176
Period size: 45 Copynumber: 3.0 Consensus size: 46
4911824 CAAAAATCAA
*
4911834 GCAAGCTAAAAAAATCCCCAATTTCATATGAACCCTAAAAAA-ATT
1 GCAAACTAAAAAAATCCCCAATTTCATATGAACCCTAAAAAATATT
** * * * *
4911879 GCAAACTAAAAAAATCTACAATTTTATATAAATCTTAAAACAATATT
1 GCAAACTAAAAAAATCCCCAATTTCATATGAACCCTAAAA-AATATT
4911926 GCAAACTAAAAAAAATCCCCAATTTCATATGAA-CCTAAAATAATATT
1 GCAAACT-AAAAAAATCCCCAATTTCATATGAACCCTAAAA-AATATT
4911973 G
1 G
4911974 TTAAATATAT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
45 33 0.42
46 2 0.03
47 23 0.29
48 21 0.27
ACGTcount: A:0.51, C:0.18, G:0.05, T:0.26
Consensus pattern (46 bp):
GCAAACTAAAAAAATCCCCAATTTCATATGAACCCTAAAAAATATT
Found at i:4913417 original size:40 final size:40
Alignment explanation
Indices: 4913362--4913485 Score: 130
Period size: 37 Copynumber: 3.1 Consensus size: 40
4913352 ACTAGTTTGG
*
4913362 CACCCAGTGCCTCATCGGATAATTCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAGTAAATTGA
* * *
4913402 CACCCAGTGTCTCATCGG-TTATACCG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGGATAAT-CCGAAGTAGTAAATTGA
* * * *
4913439 CATCCAGTGCCTCATCGAATAAATCCAAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGGAT-AATCCGAAGTAGTAAATTGA
4913480 CACCCA
1 CACCCA
4913486 ATGTCTCTTC
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
37 24 0.36
38 3 0.05
39 7 0.11
40 19 0.29
41 13 0.20
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGGATAATCCGAAGTAGTAAATTGA
Found at i:4917435 original size:29 final size:30
Alignment explanation
Indices: 4917376--4917433 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
4917366 TCCGAGCCTT
*
4917376 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
4917406 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
4917434 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:4917663 original size:13 final size:13
Alignment explanation
Indices: 4917645--4917676 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
4917635 TTTCCAGAAA
4917645 TTATGAATTTATT
1 TTATGAATTTATT
4917658 TTATGAATTTATT
1 TTATGAATTTATT
*
4917671 TGATGA
1 TTATGA
4917677 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:4917884 original size:50 final size:50
Alignment explanation
Indices: 4917771--4918062 Score: 379
Period size: 50 Copynumber: 5.7 Consensus size: 50
4917761 ATTTGGGTAA
* * *
4917771 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
4917827 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
*
4917877 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
4917927 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
4917977 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
4918027 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
4918063 TTTGGCATGT
Statistics
Matches: 214, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
49 1 0.00
50 139 0.65
51 29 0.14
52 1 0.00
53 3 0.01
55 2 0.01
56 39 0.18
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:4920366 original size:51 final size:51
Alignment explanation
Indices: 4920305--4920458 Score: 292
Period size: 51 Copynumber: 3.0 Consensus size: 51
4920295 AAATTAAAAG
4920305 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
4920356 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
4920407 ATTATACATACACCAACAATGTTTTTTAGGG-ACAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAACA
4920458 A
1 A
4920459 GTAATTTTAG
Statistics
Matches: 102, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
50 1 0.01
51 101 0.99
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:4920467 original size:33 final size:34
Alignment explanation
Indices: 4920404--4920514 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 34
4920394 CATTAAACCA
* *
4920404 ACAATTATACATACACCAACAATGT-TTTTTAGGG
1 ACAATTATACATAAACCAACAA-GTAATTTTAGGG
4920438 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
4920470 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
4920503 TCAATTATACAT
1 ACAATTATACAT
4920515 GCTTTATAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.15
33 51 0.75
34 7 0.10
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:4923595 original size:29 final size:28
Alignment explanation
Indices: 4923563--4923649 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
4923553 TCATAAGAAC
4923563 ATTTTATGAAATTATATTTAATAATAATT
1 ATTTTAT-AAATTATATTTAATAATAATT
* * *
4923592 A-TTT-TAAATTGTATTAAATCAT-ATT
1 ATTTTATAAATTATATTTAATAATAATT
* *
4923617 -TTTTAATTAAAATATATTTAATATTAATT
1 ATTTT-A-TAAATTATATTTAATAATAATT
4923646 ATTT
1 ATTT
4923650 CAATTTTCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 11
0.70 0.13 0.17
Matches are distributed among these distances:
25 6 0.14
26 14 0.32
27 1 0.02
28 16 0.36
29 4 0.09
30 3 0.07
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTTTATAAATTATATTTAATAATAATT
Found at i:4923812 original size:137 final size:136
Alignment explanation
Indices: 4923700--4923963 Score: 379
Period size: 137 Copynumber: 1.9 Consensus size: 136
4923690 TCATATAAGA
* *
4923700 ATATG-AATTATTAAGAATTTTATTAAA-TTATATACCAAAATTATAATGTATTTAATAATAATT
1 ATATGCAATTA-TAAGAATTTTATTAAATTTATATACCAAAATTAAAATATATTTAATAATAATT
* * *
4923763 ATGTTTAAATACGATTAAATTATTTATTATTGATATTAATAATCTTATTAAATTTAAATAACAAT
65 ATGTTTAAATACGATTAAAATATTTATTACTGATAATAATAATCTTATTAAATTTAAATAACAAT
4923828 AATAAAT
130 AATAAAT
* * ****
4923835 TTCTGCTAATTATAAGAATTTTATTAAATTTATATATTTTAATTAAAATATATTTAATAATAATT
1 ATATGC-AATTATAAGAATTTTATTAAATTTATATACCAAAATTAAAATATATTTAATAATAATT
*
4923900 ATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACA
65 ATGTTTAAATACGATTAAAATATTTATTACTGATAATAATAATCTTATT-AAATTTAAATAACA
4923964 TTAACAATAA
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
135 3 0.03
136 16 0.14
137 80 0.71
138 14 0.12
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (136 bp):
ATATGCAATTATAAGAATTTTATTAAATTTATATACCAAAATTAAAATATATTTAATAATAATTA
TGTTTAAATACGATTAAAATATTTATTACTGATAATAATAATCTTATTAAATTTAAATAACAATA
ATAAAT
Found at i:4923959 original size:50 final size:51
Alignment explanation
Indices: 4923903--4924116 Score: 122
Period size: 50 Copynumber: 4.2 Consensus size: 51
4923893 AATAATTATG
4923903 TTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTT-ATTAAAA
1 TTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTAATTAAAA
** * * * * ** *
4923953 TTTAAATAACATTAACAATAATCATTTAC-CAAAATAATTTTCTGCTAATTATAA
1 TTTAAATATGATTAA-AATATTTA-TTACTGATAATAATAATCT--TAATTAAAA
* * * * * * *
4924007 ---GAATTTTATTAAATTATATATT-TTAATTAA-AATATAT-TTAATTATAATTA
1 TTTAAATATGATTAAAATATTTATTACTGA-TAATAATA-ATCTTAATTA-AA--A
4924057 TGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTT-ATTAAAA
1 --TTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTAATTAAAA
4924109 TTTAAATA
1 TTTAAATA
4924117 ACAATAACAA
Statistics
Matches: 115, Mismatches: 30, Indels: 38
0.63 0.16 0.21
Matches are distributed among these distances:
47 6 0.05
48 1 0.01
49 7 0.06
50 29 0.25
51 24 0.21
52 5 0.04
53 1 0.01
54 8 0.07
55 26 0.23
56 8 0.07
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (51 bp):
TTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTAATTAAAA
Found at i:4923992 original size:137 final size:137
Alignment explanation
Indices: 4923715--4924151 Score: 459
Period size: 156 Copynumber: 3.1 Consensus size: 137
4923705 AATTATTAAG
**** * * *
4923715 AATTTTATTAAA-TTATATACCAAAATTATAATGTATTTAATAATAATTATGTTTAAATACGATT
1 AATTTTATTAAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATT
* * * * *
4923779 AAATTATTTATTATTGATATTAATAATCTTATT-AAATTTAAATAACAATAATAA-ATTTC-TGC
66 AAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA-ATCAT--
* ** * *
4923841 TAATTATAAG
128 TTACCAAAAC
4923851 AATTTTATTAAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATT
1 AATTTTATTAAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATT
*
4923916 AAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTA
66 AAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTA
*
4923981 CCAAAAT
131 CCAAAAC
* *
4923988 AATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATA
1 AA--TT-T--T-A-T-T-A-AA-TTTA-T--A-TAT-T-TTA--ATTAAAATATATTTAATAATA
4924053 ATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAA
47 ATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAA
4924118 CAATAACAATAATCATTTACCAAAAC
112 CAATAACAATAATCATTTACCAAAAC
4924144 AATTTTAT
1 AATTTTAT
4924152 GCTAAGGGTA
Statistics
Matches: 256, Mismatches: 22, Indels: 33
0.82 0.07 0.11
Matches are distributed among these distances:
136 12 0.05
137 82 0.32
138 21 0.08
139 4 0.02
140 1 0.00
142 1 0.00
143 1 0.00
144 1 0.00
145 1 0.00
146 1 0.00
147 2 0.01
148 4 0.02
149 2 0.01
150 1 0.00
151 2 0.01
152 3 0.01
153 2 0.01
154 4 0.02
156 111 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (137 bp):
AATTTTATTAAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATT
AAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTA
CCAAAAC
Found at i:4924037 original size:18 final size:18
Alignment explanation
Indices: 4924009--4924057 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
4923999 AATTATAAGA
4924009 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
4924026 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
4924042 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
4924058 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:4924043 original size:16 final size:16
Alignment explanation
Indices: 4924009--4924063 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
4923999 AATTATAAGA
4924009 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
4924026 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
4924042 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
4924056 ATGTTTAA
1 AT-TTTAA
4924064 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:4924056 original size:156 final size:157
Alignment explanation
Indices: 4923828--4924156 Score: 606
Period size: 156 Copynumber: 2.1 Consensus size: 157
4923818 AAATAACAAT
*
4923828 AATAAATTTCTGCTAATTATAAGAATTTTATTAAATTTATATATTTTAATTAAAATATATTTAAT
1 AATAATTTTCTGCTAATTATAAGAATTTTATTAAATTTATATATTTTAATTAAAATATATTTAAT
4923893 AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
66 AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
*
4923958 ATAACATTAACAATAATCATTTACCAA
131 ATAACAATAACAATAATCATTTACCAA
4923985 AATAATTTTCTGCTAATTATAAGAATTTTATTAAA-TTATATATTTTAATTAAAATATATTTAAT
1 AATAATTTTCTGCTAATTATAAGAATTTTATTAAATTTATATATTTTAATTAAAATATATTTAAT
*
4924049 TATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
66 AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
4924114 ATAACAATAACAATAATCATTTACCAA
131 ATAACAATAACAATAATCATTTACCAA
* *
4924141 AACAATTTTATGCTAA
1 AATAATTTTCTGCTAA
4924157 GGGTATTCTA
Statistics
Matches: 167, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
156 133 0.80
157 34 0.20
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (157 bp):
AATAATTTTCTGCTAATTATAAGAATTTTATTAAATTTATATATTTTAATTAAAATATATTTAAT
AATAATTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAA
ATAACAATAACAATAATCATTTACCAA
Found at i:4924259 original size:44 final size:45
Alignment explanation
Indices: 4924209--4924299 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
4924199 ACCTCTATTC
* * *
4924209 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
4924253 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
4924298 CA
1 CA
4924300 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:4924301 original size:16 final size:16
Alignment explanation
Indices: 4924280--4924331 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
4924270 GATTAGCTAT
4924280 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
4924296 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
4924312 TACACATCTAATCCAA
1 TACACCTCTAATCCAA
4924328 TACA
1 TACA
4924332 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:4927626 original size:18 final size:19
Alignment explanation
Indices: 4927603--4927647 Score: 74
Period size: 18 Copynumber: 2.4 Consensus size: 19
4927593 AAATTCATAT
4927603 CTAAATTATACTTTATT-C
1 CTAAATTATACTTTATTAC
*
4927621 CTAAATTATATTTTATTAC
1 CTAAATTATACTTTATTAC
4927640 CTAAATTA
1 CTAAATTA
4927648 CCTAACTCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (19 bp):
CTAAATTATACTTTATTAC
Found at i:4933324 original size:19 final size:19
Alignment explanation
Indices: 4933302--4933379 Score: 59
Period size: 19 Copynumber: 3.8 Consensus size: 19
4933292 AAAAAATCAA
*
4933302 TAAAAGTTATAAAAATTAT
1 TAAAATTTATAAAAATTAT
*
4933321 TAAATTTTAATAAAAAAAATTATT
1 TAAAATTT-AT---AAAAATTA-T
* *
4933345 TAAAAATTATAAAAATCA-
1 TAAAATTTATAAAAATTAT
4933363 TAAAATTTTATAAAAAT
1 TAAAA-TTTATAAAAAT
4933380 CGTAAAAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
18 5 0.11
19 16 0.34
20 9 0.19
23 10 0.21
24 7 0.15
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (19 bp):
TAAAATTTATAAAAATTAT
Found at i:4933356 original size:23 final size:23
Alignment explanation
Indices: 4933312--4933359 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
4933302 TAAAAGTTAT
**
4933312 AAAAATTATTAAATTTTAATAAA
1 AAAAATTATTAAAAATTAATAAA
4933335 AAAAATTATTTAAAAATT-ATAAA
1 AAAAATTA-TTAAAAATTAATAAA
4933358 AA
1 AA
4933360 TCATAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAAATTATTAAAAATTAATAAA
Found at i:4933393 original size:19 final size:19
Alignment explanation
Indices: 4933352--4933396 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
4933342 ATTTAAAAAT
***
4933352 TATAAAAATCATAAAATTT
1 TATAAAAATCATAAAAGAA
*
4933371 TATAAAAATCGTAAAAGAA
1 TATAAAAATCATAAAAGAA
4933390 TATAAAA
1 TATAAAA
4933397 TATATAGGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (19 bp):
TATAAAAATCATAAAAGAA
Found at i:4933454 original size:19 final size:17
Alignment explanation
Indices: 4933418--4933456 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
4933408 ATAGAAAAAA
*
4933418 AAATTATAAAATTTTAT
1 AAATTATAAAAATTTAT
4933435 AAATTCATAAGAAATTTAT
1 AAATT-ATAA-AAATTTAT
4933454 AAA
1 AAA
4933457 AAAATGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
AAATTATAAAAATTTAT
Found at i:4933973 original size:24 final size:23
Alignment explanation
Indices: 4933945--4933996 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
4933935 CTAGATTATG
4933945 TATATATATATTTCTGAATTT-TTT
1 TATATATATATTTC--AATTTATTT
*
4933969 TATATATTTATTTCAATTTATTT
1 TATATATATATTTCAATTTATTT
4933992 TATAT
1 TATAT
4933997 TTTTTAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.19
23 8 0.31
24 13 0.50
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (23 bp):
TATATATATATTTCAATTTATTT
Found at i:4949350 original size:46 final size:44
Alignment explanation
Indices: 4949297--4949626 Score: 240
Period size: 44 Copynumber: 7.6 Consensus size: 44
4949287 ATTATACAGG
* *
4949297 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGA
* * *
4949343 TCTTATCTCCCTGAGATTACGGCGGAGCGGATCAAAG-AT-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAG--A
* * * * *
4949387 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGA
* * * * *
4949426 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--A-CATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATCAGA
* *
4949467 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGA
* ** * *
4949513 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATCAGA
* *
4949557 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCA-GA
*
4949600 TCCTATCTCCCTGA-AGTTACAGTGGAG
1 TCTTATCTCCCTGAGA-TTACAGTGGAG
4949627 TGGATTAAAA
Statistics
Matches: 225, Mismatches: 42, Indels: 37
0.74 0.14 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 24 0.11
41 28 0.12
42 6 0.03
43 26 0.12
44 69 0.31
45 1 0.00
46 68 0.30
47 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGA
Found at i:4949577 original size:44 final size:43
Alignment explanation
Indices: 4949297--4949665 Score: 200
Period size: 44 Copynumber: 8.5 Consensus size: 43
4949287 ATTATACAGG
* ** * *
4949297 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCA---GAGA
* * * * *
4949343 TCTTATCTCCCTGAGATTACGGCGGAGCGGATCAAAG-ATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGAG--A
* * * *
4949387 TCCTATCTCCTTGAGATTACAATGGAGCGGATT-AA--AG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGAGA
* * * * * *
4949426 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATCACATCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAGCAGAGA
* ** * *
4949467 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCA---GAGA
* *
4949513 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG-CAGAGA
* * **
4949557 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACA-CTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG-CAGAGA
* ** ** *
4949600 TCCTATCTCCCTGA-AGTTACAGTGGAGTGGATTAAAATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAGCAGA-GA
* *
4949644 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
4949666 CAGAGTAGGT
Statistics
Matches: 249, Mismatches: 57, Indels: 36
0.73 0.17 0.11
Matches are distributed among these distances:
38 1 0.00
39 24 0.10
40 1 0.00
41 30 0.12
42 9 0.04
43 32 0.13
44 85 0.34
45 2 0.01
46 64 0.26
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGAGA
Found at i:4949646 original size:87 final size:88
Alignment explanation
Indices: 4949467--4949666 Score: 217
Period size: 87 Copynumber: 2.3 Consensus size: 88
4949457 TCACATCAGG
* * *
4949467 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAA--TCAGATCCTATCTCCCTGAAGTTA
* **
4949532 CAGTGGAGCAGATTGAAGCCAGAGA
64 CAGTGGAGCAGATTAAAGAAAGAGA
* * *
4949557 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-CACTATCCTATCTCCCTGAAGTTAC
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCA-GATCCTATCTCCCTGAAGTTAC
** *
4949620 AGTGGAGTGGATTAAAATAAAG-GA
65 AGTGGAGCAGATT-AAAGAAAGAGA
* *
4949644 TCTTATCTCTCTGAGGTTACAGC
1 TCTTATCTCCCTGAGATTACAGC
4949667 AGAGTAGGTC
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
86 2 0.02
87 53 0.56
88 4 0.04
89 1 0.01
90 34 0.36
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (88 bp):
TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCAGATCCTATCTCCCTGAAGTTACA
GTGGAGCAGATTAAAGAAAGAGA
Found at i:4949785 original size:218 final size:214
Alignment explanation
Indices: 4949347--4949788 Score: 464
Period size: 218 Copynumber: 2.0 Consensus size: 214
4949337 TTCAGATCTT
* * * * *
4949347 ATCTCCCTGAGATTACGGCGGAGCGGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
1 ATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATTACAATGG
*
4949412 AGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCC
66 AGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCTTATCTCC
* * *** * *
4949477 CTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCA
131 CTGAAAATACAGTGGAACAGACCAAAGAACAACAGATCTTATCCCCCTGAAGTTACAGTGGAGCA
* **
4949542 GATTGAAGCCAGAGATCTT
196 GATTGAAGACAGAGATCCG
*
4949561 ATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACT-ATCCTATCTCCCTGA-AGTTACAGTG
1 ATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGA-TTACAATG
* * * * *
4949624 GAGTGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCATCAGGTCTT
65 GAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCTT
* * * *** **
4949689 ATTTCCCTGAAAATGCAGTGGAATAGATTGAA-AACAAC-GAATCTTATCCCCCTGAAGTTGTAG
125 ATCTCCCTGAAAATACAGTGGAACAGACCAAAGAACAACAG-ATCTTATCCCCCTGAAGTTACAG
* *
4949752 TGGGGGCA-AGTTGAAGATATGAG-TCCG
189 T-GGAGCAGA-TTGAAGACA-GAGATCCG
4949779 ATCTCCCTGA
1 ATCTCCCTGA
4949789 AGTTGCAGTG
Statistics
Matches: 186, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
212 1 0.01
213 27 0.15
214 35 0.19
216 1 0.01
217 24 0.13
218 95 0.51
219 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (214 bp):
ATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATTACAATGG
AGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCTTATCTCC
CTGAAAATACAGTGGAACAGACCAAAGAACAACAGATCTTATCCCCCTGAAGTTACAGTGGAGCA
GATTGAAGACAGAGATCCG
Found at i:4961866 original size:33 final size:35
Alignment explanation
Indices: 4961816--4961895 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 35
4961806 AGGTACAAAA
*
4961816 TATATACATGTACATAT-A-TATAAAAAAAATAAT
1 TATATACATATACATATAATTATAAAAAAAATAAT
* *
4961849 TATATACATATATATATAGATTATAAAAAAGATAAT
1 TATATACATATACATATA-ATTATAAAAAAAATAAT
* *
4961885 TACATATATAT
1 TATATACATAT
4961896 GTAAAAACAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
33 15 0.38
35 1 0.03
36 23 0.59
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (35 bp):
TATATACATATACATATAATTATAAAAAAAATAAT
Found at i:4962085 original size:17 final size:17
Alignment explanation
Indices: 4962063--4962106 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
4962053 TAGGAAATAA
*
4962063 AAAATGTATATGTCTAT
1 AAAATGTATATGTATAT
*
4962080 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
4962097 -ATATGTATAT
1 AAAATGTATAT
4962107 AAAAGTTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:4964373 original size:25 final size:25
Alignment explanation
Indices: 4964339--4964387 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
4964329 TTGTTGAAAA
4964339 TTTTATAATTTTTAAAAAATATTTTT
1 TTTTATAATTTTT-AAAAATATTTTT
*
4964365 TTTTA-AATTTTTATAAATATTTT
1 TTTTATAATTTTTAAAAATATTTT
4964388 AAATTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
25 7 0.32
26 5 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTATAATTTTTAAAAATATTTTT
Found at i:4964381 original size:10 final size:9
Alignment explanation
Indices: 4964363--4964435 Score: 65
Period size: 9 Copynumber: 7.7 Consensus size: 9
4964353 AAAAATATTT
4964363 TTTTTTAAA
1 TTTTTTAAA
4964372 TTTTTATAAA
1 TTTTT-TAAA
*
4964382 TATTTTAAA
1 TTTTTTAAA
**
4964391 TTTTAAAAA
1 TTTTTTAAA
*
4964400 TTATTTTGAA
1 TT-TTTTAAA
4964410 TTTTTTAAAA
1 TTTTTT-AAA
*
4964420 TTATTTTGAA
1 TT-TTTTAAA
4964430 TTTTTT
1 TTTTTT
4964436 TGTTGAGAGA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
9 25 0.49
10 22 0.43
11 4 0.08
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:4964394 original size:26 final size:27
Alignment explanation
Indices: 4964336--4964397 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
4964326 TTTTTGTTGA
4964336 AAATTTTATAATTTTTAAAAAATATTTT
1 AAATTTTA-AATTTTTAAAAAATATTTT
* *
4964364 --TTTTTAAATTTTT-ATAAATATTTT
1 AAATTTTAAATTTTTAAAAAATATTTT
4964388 AAATTTTAAA
1 AAATTTTAAA
4964398 AATTATTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 10 0.34
25 7 0.24
26 12 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
AAATTTTAAATTTTTAAAAAATATTTT
Found at i:4964396 original size:43 final size:47
Alignment explanation
Indices: 4964316--4964406 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 47
4964306 TCTTTATATA
*
4964316 TTTTTTAGAATTTTTGTTGAAAATTTTATAATTTTTAAAAAATATTT
1 TTTTTTAGAATTTTTGATGAAAATTTTATAATTTTTAAAAAATATTT
*
4964363 TTTTTTA-AATTTTT-AT-AAATATTTTA-AA-TTTTAAAAATTATTT
1 TTTTTTAGAATTTTTGATGAAA-ATTTTATAATTTTTAAAAAATATTT
4964406 T
1 T
4964407 GAATTTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
43 15 0.37
44 5 0.12
45 7 0.17
46 7 0.17
47 7 0.17
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.59
Consensus pattern (47 bp):
TTTTTTAGAATTTTTGATGAAAATTTTATAATTTTTAAAAAATATTT
Found at i:4964419 original size:20 final size:20
Alignment explanation
Indices: 4964372--4964435 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
4964362 TTTTTTTAAA
*
4964372 TTTTTATAAA-TATTTT-AAA
1 TTTTTA-AAATTATTTTGAAT
*
4964391 TTTTAAAAATTATTTTGAAT
1 TTTTTAAAATTATTTTGAAT
4964411 TTTTTAAAATTATTTTGAAT
1 TTTTTAAAATTATTTTGAAT
4964431 TTTTT
1 TTTTT
4964436 TGTTGAGAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
18 3 0.08
19 11 0.28
20 26 0.65
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTTTAAAATTATTTTGAAT
Found at i:4974392 original size:18 final size:18
Alignment explanation
Indices: 4974369--4974406 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4974359 CCAGCAACAG
*
4974369 CAACAGCAACTACTGCAA
1 CAACAGCAACTACAGCAA
*
4974387 CAACAGCAGCTACAGCAA
1 CAACAGCAACTACAGCAA
4974405 CA
1 CA
4974407 TGCTCAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.34, G:0.13, T:0.08
Consensus pattern (18 bp):
CAACAGCAACTACAGCAA
Found at i:4974396 original size:27 final size:27
Alignment explanation
Indices: 4974366--4974418 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
4974356 ACACCAGCAA
4974366 CAGCAACAGCAAC-TACTGCAACAACAG
1 CAGCAACAGCAACATACT-CAACAACAG
* *
4974393 CAGCTACAGCAACATGCTCAACAACA
1 CAGCAACAGCAACATACTCAACAACA
4974419 ATTACAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.43, C:0.34, G:0.13, T:0.09
Consensus pattern (27 bp):
CAGCAACAGCAACATACTCAACAACAG
Found at i:4974405 original size:15 final size:15
Alignment explanation
Indices: 4974342--4974406 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
4974332 TCCTCAAATG
*
4974342 CAGCAGCCACAGCAA
1 CAGCAGCTACAGCAA
* *
4974357 CACCAGCAACAGCAA
1 CAGCAGCTACAGCAA
* *
4974372 CAGCAACTACTGCAACAA
1 CAGCAGCTA---CAGCAA
4974390 CAGCAGCTACAGCAA
1 CAGCAGCTACAGCAA
4974405 CA
1 CA
4974407 TGCTCAACAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
15 26 0.67
18 13 0.33
ACGTcount: A:0.43, C:0.37, G:0.15, T:0.05
Consensus pattern (15 bp):
CAGCAGCTACAGCAA
Found at i:4978907 original size:68 final size:67
Alignment explanation
Indices: 4978794--4978931 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 67
4978784 AATGGGACTC
* *
4978794 AAATATATTATTTAATCATGCTTTATTCTTAACGTGAAAATATCGAATTTTAAATTAATATTTTA
1 AAATATATTATTTAATCATGCTTTATTCTTAACGTGAAAATATCGAATTCTAAATTAATATTTAA
4978859 AA
66 AA
4978861 AAATGATATTATTTAATCATGCTTTATTCTTAACGTGAAAATATCGAATTCTAAATTAATATTTA
1 AAAT-ATATTATTTAATCATGCTTTATTCTTAACGTGAAAATATCGAATTCTAAATTAATATTTA
4978926 AAA
65 AAA
4978929 AAA
1 AAA
4978932 ATTACTCTTG
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
67 4 0.06
68 64 0.94
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
Consensus pattern (67 bp):
AAATATATTATTTAATCATGCTTTATTCTTAACGTGAAAATATCGAATTCTAAATTAATATTTAA
AA
Found at i:4988055 original size:28 final size:27
Alignment explanation
Indices: 4988009--4988106 Score: 69
Period size: 28 Copynumber: 3.6 Consensus size: 27
4987999 AAATGGATTT
*
4988009 TAAATTTTAAAGTAA-AAAATGAAGAAA
1 TAAATTTTAAA-AAATAAAATGAAGAAA
*
4988036 TCAAATTTTAAAAAATAAAAAT-ATAGAGAT
1 T-AAATTTTAAAAAAT-AAAATGA-AGA-AA
* *
4988066 TAAATTTT-AAATATAAAA-GAATATAA
1 TAAATTTTAAAAAATAAAATGAAGA-AA
*
4988092 TAAATTTTAATAAAT
1 TAAATTTTAAAAAAT
4988107 TATATAACCT
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
26 11 0.20
27 12 0.21
28 16 0.29
29 15 0.27
30 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (27 bp):
TAAATTTTAAAAAATAAAATGAAGAAA
Found at i:4988070 original size:29 final size:28
Alignment explanation
Indices: 4988008--4988076 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
4987998 CAAATGGATT
**
4988008 TTAAATTTTAAAGTAAAAAATGAAGAAA
1 TTAAATTTTAAAAAAAAAAATGAAGAAA
* *
4988036 TCAAATTTTAAAAAATAAAAAT-ATAGAGA
1 TTAAATTTTAAAAAA-AAAAATGA-AGAAA
4988065 TTAAATTTTAAA
1 TTAAATTTTAAA
4988077 TATAAAAGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 13 0.38
29 21 0.62
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.32
Consensus pattern (28 bp):
TTAAATTTTAAAAAAAAAAATGAAGAAA
Found at i:5016028 original size:45 final size:44
Alignment explanation
Indices: 5015977--5016069 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
5015967 GGTTCGCTGT
5015977 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGATTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGATTGAATGG
* *
5016022 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGATTGAATGG
5016066 AATG
1 AATG
5016070 ATGTTGTACT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 22 0.49
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGATTGAATGG
Found at i:5016293 original size:56 final size:56
Alignment explanation
Indices: 5016178--5016310 Score: 153
Period size: 56 Copynumber: 2.3 Consensus size: 56
5016168 AATAAGATTA
* * *
5016178 TTAATATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAATA-AAATAATATATAATTTAATAAAATTTTAACATAATTATTATT-AATATAAT
* *
5016236 TTAATAAAA-AATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATATATAATTTAATAAAATT-TTAACATAATTATTATTAATAT-AAT
*
5016292 TTACTAAAATAATAATATA
1 TTAATAAAATAAT-ATATA
5016311 TAATATAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
55 4 0.06
56 29 0.45
57 21 0.32
58 11 0.17
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (56 bp):
TTAATAAAATAATATATAATTTAATAAAATTTTAACATAATTATTATTAATATAAT
Found at i:5020416 original size:32 final size:32
Alignment explanation
Indices: 5020375--5020438 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
5020365 GTACGTTTTC
5020375 TTTGCTATAAACAACCATTATCAGTAGAATCA
1 TTTGCTATAAACAACCATTATCAGTAGAATCA
5020407 TTTGCTATAAACAACCATTATCAGTAGAATCA
1 TTTGCTATAAACAACCATTATCAGTAGAATCA
5020439 ACAAATACAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (32 bp):
TTTGCTATAAACAACCATTATCAGTAGAATCA
Found at i:5024433 original size:14 final size:15
Alignment explanation
Indices: 5024397--5024437 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
5024387 ACAGAAAAGT
5024397 AAAACATTTT-CTAG
1 AAAACATTTTACTAG
**
5024411 AAATTATTTTAC-AG
1 AAAACATTTTACTAG
5024425 AAAACATTTTACT
1 AAAACATTTTACT
5024438 GACAATCATA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (15 bp):
AAAACATTTTACTAG
Found at i:5036058 original size:18 final size:18
Alignment explanation
Indices: 5036035--5036070 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
5036025 TACATGGATT
5036035 TTTTAATATCTATTTAAA
1 TTTTAATATCTATTTAAA
5036053 TTTTAATATCTATTTAAA
1 TTTTAATATCTATTTAAA
5036071 ATTGGTGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTAATATCTATTTAAA
Found at i:5038804 original size:37 final size:36
Alignment explanation
Indices: 5038747--5038820 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 36
5038737 TGTTAATTTC
5038747 AAGACTTTGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTTGTAATGTTTTTAATTATGTAGTGATTCA
5038783 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTT-TGTAATGTTTTTAATTATGTAGTGATTCA
5038820 A
1 A
5038821 TTCGGGTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 7 0.19
37 30 0.81
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.46
Consensus pattern (36 bp):
AAGACTTTGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:5038810 original size:17 final size:17
Alignment explanation
Indices: 5038754--5038811 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
5038744 TTCAAGACTT
5038754 TGTAATGTTTTTAATTA
1 TGTAATGTTTTTAATTA
* ***
5038771 TGTAGTGATTCAAAGACTTA
1 TGTAATG-TTTTTA-A-TTA
5038791 TGTAATGTTTTTAATTA
1 TGTAATGTTTTTAATTA
5038808 TGTA
1 TGTA
5038812 GTGATTCAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
17 13 0.43
18 4 0.13
19 4 0.13
20 9 0.30
ACGTcount: A:0.31, C:0.03, G:0.16, T:0.50
Consensus pattern (17 bp):
TGTAATGTTTTTAATTA
Found at i:5038833 original size:9 final size:9
Alignment explanation
Indices: 5038819--5038849 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
5038809 GTAGTGATTC
*
5038819 AATTCGGGT
1 AATTCGGTT
5038828 AATTCGGTT
1 AATTCGGTT
5038837 AATTCGGTT
1 AATTCGGTT
5038846 AATT
1 AATT
5038850 TTTAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:5053826 original size:19 final size:18
Alignment explanation
Indices: 5053790--5053840 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
5053780 AATTAATTTT
5053790 TAAAAATTTAAAAA-ATTA
1 TAAAAA-TTAAAAATATTA
5053808 TAAAAATTAAAAATCATTA
1 TAAAAATTAAAAAT-ATTA
*
5053827 -AAATCATTAAAAAT
1 TAAA-AATTAAAAAT
5053841 TATATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.24
18 9 0.31
19 13 0.45
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAATTAAAAATATTA
Found at i:5061108 original size:8 final size:8
Alignment explanation
Indices: 5061095--5061134 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
5061085 ATGATGAATG
5061095 AAAATGAA
1 AAAATGAA
5061103 AAAATG--
1 AAAATGAA
5061109 AAAATG-A
1 AAAATGAA
5061116 AAAATGAA
1 AAAATGAA
5061124 AAAATGAA
1 AAAATGAA
5061132 AAA
1 AAA
5061135 TAGAGAGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.20
7 6 0.20
8 18 0.60
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAATGAA
Found at i:5061110 original size:14 final size:13
Alignment explanation
Indices: 5061091--5061135 Score: 63
Period size: 15 Copynumber: 3.2 Consensus size: 13
5061081 AATGATGATG
5061091 AATGAAAATGAAAA
1 AATGAAAATG-AAA
5061105 AATGAAAATGAAA
1 AATGAAAATGAAA
5061118 AATGAAAAAATGAAA
1 AATG--AAAATGAAA
5061133 AAT
1 AAT
5061136 AGAGAGGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.24
14 10 0.34
15 12 0.41
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (13 bp):
AATGAAAATGAAA
Found at i:5061119 original size:21 final size:20
Alignment explanation
Indices: 5061091--5061133 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
5061081 AATGATGATG
5061091 AATGAAAATGAAAAAATGAA
1 AATGAAAATGAAAAAATGAA
5061111 AATGAAAAATGAAAAAATGAA
1 AATG-AAAATGAAAAAATGAA
5061132 AA
1 AA
5061134 ATAGAGAGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (20 bp):
AATGAAAATGAAAAAATGAA
Found at i:5062441 original size:44 final size:42
Alignment explanation
Indices: 5062392--5062825 Score: 202
Period size: 44 Copynumber: 10.4 Consensus size: 42
5062382 ATTGCAGATA
5062392 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTG-AGATAG-AATC
* * * * *
5062436 CTATCTCTCTGAGATTACAGTGGAGCGGATT-A-A-AGGATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAGATAGAATC
* ** * * * *
5062475 TTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TATCAG-GTC
1 TTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAGAT-AGAATC
5062516 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTG-AGATAG-AATC
* * * * ** *
5062560 CTATCTCCTTGAGATTACAGTGGGGTGGATT-A-A-AGGATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAGATAGAATC
* * ** * * *
5062599 TTATCTCTCTGA-AGTTACAGCAGAGTGGATCG-CATCA-AGTC
1 TTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAGAT-AGAATC
*
5062640 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTG-AGATAG-AATC
* * * * * *
5062684 CTATCTCCCTGAGATTATAGTGGAGCGGATT-A-A-GGGATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAGATAGAATC
* ** * * * *
5062723 TTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TATCA-AGTC
1 TTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAGAT-AGAATC
* * * *
5062764 TTATCTCCTTGAGATTACAACGAAGCAGATTGAAGCTAGTAATC
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTG-AGATAG-AATC
* *
5062808 CTATCTCCTTGAGATTAC
1 TTATCTCCCTGAGATTAC
5062826 GGTAGAGCGG
Statistics
Matches: 289, Mismatches: 71, Indels: 60
0.69 0.17 0.14
Matches are distributed among these distances:
38 3 0.01
39 77 0.27
40 8 0.03
41 80 0.28
42 13 0.04
43 4 0.01
44 104 0.36
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TTATCTCCCTGAGATTACAGCGGAGCAGATTGAGATAGAATC
Found at i:5062533 original size:80 final size:80
Alignment explanation
Indices: 5062437--5062782 Score: 233
Period size: 80 Copynumber: 4.2 Consensus size: 80
5062427 ATAGTAATCC
* *
5062437 TATCTCTCTGAGATTACAGTGGAGCGGATTAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGT
1 TATCTCCCTGAGATTACAGCGGAGCGGATTAAAGGATCTTATCTCTCTGAGA-TTACAGTAGAGT
5062501 AGATCGTATCAGGTCT
65 AGATCGTATCAGGTCT
* * *
5062517 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTC-CTTGAGATTACAGT
1 TATCTCCCTGAGATTACAGCGGAGCGGATT--A-A-AG-GATCTTATCTCTC-TGAGATTACAGT
* * * *
5062581 GGGGTGGAT--TA-AAGGATCT
60 AGAGTAGATCGTATCAGG-TCT
* * * * * **
5062600 TATCTCTCTGA-AGTTACAGCAGAGTGGATCGCATCAA-G-TCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAGA-TTACAGCGGAGCGGAT----TAAAGGATCTTATCTCTCTGAGATTACAGTA
* * * * * *
5062662 GAGCAGATTGAAGCTAGTAATCC
61 GAGTAGATCGTATC-AG--GTCT
* * *
5062685 TATCTCCCTGAGATTATAGTGGAGCGGATTAAGGGATCTTATCTCTCTGA-AGTTACAGTAGAGT
1 TATCTCCCTGAGATTACAGCGGAGCGGATTAAAGGATCTTATCTCTCTGAGA-TTACAGTAGAGT
*
5062749 AGATCGTATCAAGTCT
65 AGATCGTATCAGGTCT
*
5062765 TATCTCCTTGAGATTACA
1 TATCTCCCTGAGATTACA
5062783 ACGAAGCAGA
Statistics
Matches: 199, Mismatches: 43, Indels: 48
0.69 0.15 0.17
Matches are distributed among these distances:
80 70 0.35
81 3 0.02
82 9 0.05
83 59 0.30
84 6 0.03
85 49 0.25
86 2 0.01
87 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (80 bp):
TATCTCCCTGAGATTACAGCGGAGCGGATTAAAGGATCTTATCTCTCTGAGATTACAGTAGAGTA
GATCGTATCAGGTCT
Found at i:5062612 original size:124 final size:124
Alignment explanation
Indices: 5062392--5062904 Score: 785
Period size: 124 Copynumber: 4.1 Consensus size: 124
5062382 ATTGCAGATA
5062392 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCT-CTCTGAGATTACAG
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCT-TGAGATTACAG
*
5062456 TGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTC
65 TGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTC
5062516 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCTTGAGATTACAGT
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCTTGAGATTACAGT
* * * * *
5062581 GGGGTGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTGGATCGCATCAAGTC
66 GGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTC
* * *
5062640 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGT
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCTTGAGATTACAGT
*
5062705 GGAGCGGATTAAGGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTC
66 GGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTC
* * * * *
5062764 TTATCTCCTTGAGATTACAACGAAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACGGT
1 TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCTTGAGATTACAGT
* * * *
5062829 AGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTATCAGGTC
66 GGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTC
*
5062893 TTATATCCCTGA
1 TTATCTCCCTGA
5062905 TGTTGCAGTG
Statistics
Matches: 355, Mismatches: 28, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
124 296 0.83
125 3 0.01
129 56 0.16
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (124 bp):
TTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCTTGAGATTACAGT
GGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAGTC
Found at i:5064488 original size:3 final size:3
Alignment explanation
Indices: 5064480--5064516 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
5064470 TATTTTAGTG
*
5064480 TTA TTA TTA TTA TTA TTA TTA CTA TTA TTTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
5064517 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:5065224 original size:110 final size:108
Alignment explanation
Indices: 5065017--5065412 Score: 524
Period size: 109 Copynumber: 3.6 Consensus size: 108
5065007 TCAAAAAAGG
* * * * * *
5065017 AAAATATTTCCAATTAAGGTAATATTTAGCGTTTGGAAATTCAAGAAAACGTGCCCTAAAGTGCT
1 AAAA-ATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAG-AAACATGCCCTAAAGTGCT
* * *
5065082 AGGTGTCGATTTTTCTCGTTCAACTAAATGGCTAAATATCCTTTT
64 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
* * * *
5065127 AAAAAATTTTAAAATAAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 -AAAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAG-AAACATGCCCTAAAGTGCT
*
5065192 GGGTGTCAATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
64 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
* * * *
5065237 AAAAATTTCAAAATAAGACAATGTTTTGCATTTGGGAAATTCGAGGAACATGCCCTAAAGTGCTG
1 AAAAATTTCAAAATAAGGCAATATTTTGCGTTT-GGAAATTCGAGAAACATGCCCTAAAGTGCTG
*
5065302 AGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
65 GGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
* * * *
5065346 AAAAATTTCAAAATAAGGCAA-AGTTTTGCGTTTGAAAATTCGAGGAACAAGCCCTAATGTGCTG
1 AAAAATTTCAAAATAAGGCAATA-TTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAAGTGCTG
5065410 GGT
65 GGT
5065413 TTTGATTTCT
Statistics
Matches: 256, Mismatches: 27, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
108 30 0.12
109 116 0.45
110 106 0.41
111 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (108 bp):
AAAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAAGTGCTGG
GTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
Found at i:5075480 original size:56 final size:56
Alignment explanation
Indices: 5075404--5075536 Score: 153
Period size: 56 Copynumber: 2.3 Consensus size: 56
5075394 TTATATATTA
* * *
5075404 TATATTATTATTTTAGTAAATTCATA-TAAGAATAATTATATTAAGAATTTTATTAAAT
1 TATA-TATTATTTTATTAAATT-ATATTAAGAATAATTATATTAA-AATATGATTAAAT
* *
5075462 TATATATT-TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAAT
1 TATATATTATTTTATTAAATTATA-TTAAGAATAATTATATTAAAATATGATTAAAT
*
5075518 TATTTATTATTTATATTAA
1 TATATATTATTT-TATTAA
5075537 TAATCTTATT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
55 3 0.05
56 29 0.45
57 23 0.35
58 10 0.15
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (56 bp):
TATATATTATTTTATTAAATTATATTAAGAATAATTATATTAAAATATGATTAAAT
Found at i:5075732 original size:45 final size:44
Alignment explanation
Indices: 5075645--5075737 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 44
5075635 AGTACAACAT
5075645 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
* *
5075689 CATTCCATTCAATCAAACA-ATTGAATTACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTACAGTTCTATTC
5075734 CATT
1 CATT
5075738 ACAGCGAACC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.47
45 23 0.51
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:5086754 original size:41 final size:41
Alignment explanation
Indices: 5086697--5087011 Score: 432
Period size: 41 Copynumber: 7.7 Consensus size: 41
5086687 TTAATATAAA
* * * *
5086697 CAGATTCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * * *
5086739 CAGATTACCAGCACTTAGCCTGCTAGGCTTATAGCCTAATC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
5086780 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * * * *
5086821 CAGATCACCAGCACTTAGCCTGCTAGACTTATAGTCTAATC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
5086862 CAGTTCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
5086903 CAGATCACCGGTACTTAGCTTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
5086944 CAAATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
5086985 TAGATCACCGGAACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
5087012 TTTTAAAACC
Statistics
Matches: 237, Mismatches: 36, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
41 233 0.98
42 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:5105787 original size:31 final size:31
Alignment explanation
Indices: 5105747--5105809 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
5105737 ATTTTAGGCA
*
5105747 CTGTCGTTAACAACAATTTTTATTTTGGTCAC
1 CTGTCGTTAA-AACAATTTTCATTTTGGTCAC
** *
5105779 CTGT-GTTAATTCAATTTTCATTTTTGTCAC
1 CTGTCGTTAAAACAATTTTCATTTTGGTCAC
5105809 C
1 C
5105810 CAACCTTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 18 0.67
31 5 0.19
32 4 0.15
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48
Consensus pattern (31 bp):
CTGTCGTTAAAACAATTTTCATTTTGGTCAC
Found at i:5110769 original size:41 final size:41
Alignment explanation
Indices: 5110609--5110760 Score: 259
Period size: 41 Copynumber: 3.7 Consensus size: 41
5110599 TTAATTTAAA
*
5110609 CAGATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
5110651 CAGATCACCGACACTTAGCCTACTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
5110692 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTAATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
5110733 CAGATCACCGGCACTTAGCCTGCTAGGC
1 CAGATCACCGGCACTTAGCCTGCTAGGC
5110761 GCTAAGCCTG
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 100 0.96
42 4 0.04
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:5116588 original size:11 final size:11
Alignment explanation
Indices: 5116572--5116596 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5116562 ATAAAATGAA
5116572 AAAAGTTGTTT
1 AAAAGTTGTTT
5116583 AAAAGTTGTTT
1 AAAAGTTGTTT
5116594 AAA
1 AAA
5116597 CTACCCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (11 bp):
AAAAGTTGTTT
Found at i:5118504 original size:113 final size:113
Alignment explanation
Indices: 5118350--5118567 Score: 248
Period size: 113 Copynumber: 1.9 Consensus size: 113
5118340 ACGCAGCGTG
* * * *
5118350 TTGGTCTTGATGTATAATATAATTAGTGGCGTTTAAGG-AAAACGCCAG-TAAAGGATAGTTA-T
1 TTGGTCTTGAAGTATAATAGAATTAGTGGCGCTTAAGGAAAAACGCC-GCTAAAGGATA-TCATT
*
5118412 AGCAGCGTTTGGTGGTAA-GCGCC-TCAAAATATCTTAACCAAAATGTAGAGT
64 AGCAGCATTT-GTGG-AACGCGCCGT-AAAATATCTTAACCAAAATGTAGAGT
* * * * *
5118463 TTGGTCTTGAAGTGTATTAGAATTAGTGGCGCTTGATGAAAAACGCCGCTAAAGTATATCATTAG
1 TTGGTCTTGAAGTATAATAGAATTAGTGGCGCTTAAGGAAAAACGCCGCTAAAGGATATCATTAG
* *
5118528 CGGCATTTGTGGAACGCGCCGTAAAGTATCTTAACCAAAA
66 CAGCATTTGTGGAACGCGCCGTAAAATATCTTAACCAAAA
5118568 CACAGCTTTT
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
112 2 0.02
113 60 0.68
114 26 0.30
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (113 bp):
TTGGTCTTGAAGTATAATAGAATTAGTGGCGCTTAAGGAAAAACGCCGCTAAAGGATATCATTAG
CAGCATTTGTGGAACGCGCCGTAAAATATCTTAACCAAAATGTAGAGT
Found at i:5119236 original size:7 final size:7
Alignment explanation
Indices: 5119224--5119260 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
5119214 TATGGTTTAA
5119224 GGGTTAG
1 GGGTTAG
5119231 GGGTTAG
1 GGGTTAG
5119238 GGGTTAG
1 GGGTTAG
5119245 GGGTTAG
1 GGGTTAG
5119252 GGGTTAG
1 GGGTTAG
5119259 GG
1 GG
5119261 ATTTGGGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.14, C:0.00, G:0.59, T:0.27
Consensus pattern (7 bp):
GGGTTAG
Found at i:5119276 original size:12 final size:14
Alignment explanation
Indices: 5119223--5119282 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
5119213 ATATGGTTTA
*
5119223 AGGGTTAGGG-GTT
1 AGGGTTAGGGATTT
*
5119236 AGGGGTTAGGG-GTT
1 A-GGGTTAGGGATTT
5119250 AGGGGTTAGGGATTT
1 A-GGGTTAGGGATTT
5119265 -GGGTTA-GGATTT
1 AGGGTTAGGGATTT
5119277 AGGGTT
1 AGGGTT
5119283 TTGATTAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
12 6 0.14
13 12 0.28
14 23 0.53
15 2 0.05
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (14 bp):
AGGGTTAGGGATTT
Found at i:5119278 original size:20 final size:20
Alignment explanation
Indices: 5119224--5119285 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
5119214 TATGGTTTAA
* * *
5119224 GGGTTAGGGGTTAGGGGTTAG
1 GGGTTAGGAGTTAGGGATT-T
*
5119245 GGGTTAGGGGTTAGGGATTT
1 GGGTTAGGAGTTAGGGATTT
* *
5119265 GGGTTAGGATTTAGGGTTTT
1 GGGTTAGGAGTTAGGGATTT
5119285 G
1 G
5119286 ATTAATTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 18 0.50
21 18 0.50
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (20 bp):
GGGTTAGGAGTTAGGGATTT
Found at i:5122027 original size:16 final size:16
Alignment explanation
Indices: 5122006--5122041 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
5121996 GTATTTATAA
**
5122006 TTATCGATTTGTAATT
1 TTATCGATTTACAATT
5122022 TTATCGATTTACAATT
1 TTATCGATTTACAATT
5122038 TTAT
1 TTAT
5122042 TTCAATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (16 bp):
TTATCGATTTACAATT
Found at i:5122191 original size:67 final size:67
Alignment explanation
Indices: 5122101--5122239 Score: 269
Period size: 67 Copynumber: 2.1 Consensus size: 67
5122091 ATTAATTGAT
*
5122101 TGAATGTCAATGAATTTTCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
1 TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
5122166 AA
66 AA
5122168 TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
1 TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
5122233 AA
66 AA
5122235 TGAAT
1 TGAAT
5122240 TCTCAAAAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (67 bp):
TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
AA
Found at i:5122481 original size:17 final size:17
Alignment explanation
Indices: 5122459--5122493 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5122449 TACATGATTT
5122459 ACATATTACTTACTAAA
1 ACATATTACTTACTAAA
**
5122476 ACATATTTTTTACTAAA
1 ACATATTACTTACTAAA
5122493 A
1 A
5122494 TTTACTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (17 bp):
ACATATTACTTACTAAA
Found at i:5122511 original size:13 final size:13
Alignment explanation
Indices: 5122495--5122553 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
5122485 TTACTAAAAT
*
5122495 TTACTTTAATATA
1 TTACTTAAATATA
*
5122508 TTACTTGAATATA
1 TTACTTAAATATA
5122521 TTACTTAAATA-A
1 TTACTTAAATATA
*
5122533 TTTACTTAAATACA
1 -TTACTTAAATATA
5122547 TTACTTA
1 TTACTTA
5122554 CTAAAATTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
12 1 0.02
13 40 0.95
14 1 0.02
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:5123220 original size:9 final size:9
Alignment explanation
Indices: 5123208--5123438 Score: 171
Period size: 9 Copynumber: 26.4 Consensus size: 9
5123198 TAGTTACATA
*
5123208 ATAACTTAT
1 ATAACTTAC
5123217 ATAAACTTAC
1 AT-AACTTAC
*
5123227 ATAA-TACAC
1 ATAACT-TAC
*
5123236 ATTACTTAC
1 ATAACTTAC
* *
5123245 ATAGCATAC
1 ATAACTTAC
5123254 ATAACTTAC
1 ATAACTTAC
* *
5123263 ACAACTTAA
1 ATAACTTAC
5123272 ATAA--TAC
1 ATAACTTAC
5123279 ATAACTTAC
1 ATAACTTAC
5123288 ATAACTTAC
1 ATAACTTAC
*
5123297 ATAACCTAC
1 ATAACTTAC
*
5123306 ATAATACATA-
1 AT-A-ACTTAC
5123316 ATAACTTAC
1 ATAACTTAC
5123325 --AACTTAC
1 ATAACTTAC
*
5123332 ATAACATAC
1 ATAACTTAC
* **
5123341 ATTACTTTG
1 ATAACTTAC
5123350 ATAACTTAC
1 ATAACTTAC
5123359 ATAACTTAC
1 ATAACTTAC
5123368 ATAA--TAC
1 ATAACTTAC
* *
5123375 ACAACTTAA
1 ATAACTTAC
*
5123384 ATAGCTTAC
1 ATAACTTAC
*
5123393 TTAA--TAC
1 ATAACTTAC
5123400 ATAACTTAC
1 ATAACTTAC
5123409 ATAACTT--
1 ATAACTTAC
*
5123416 ATACACGTAC
1 ATA-ACTTAC
5123426 ATAACTTAC
1 ATAACTTAC
5123435 ATAA
1 ATAA
5123439 TTGACTTAAT
Statistics
Matches: 171, Mismatches: 34, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
7 28 0.16
8 8 0.05
9 116 0.68
10 15 0.09
11 4 0.02
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAACTTAC
Found at i:5123284 original size:25 final size:25
Alignment explanation
Indices: 5123250--5123309 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 25
5123240 CTTACATAGC
5123250 ATACATAACTTACACAACTTAAATA
1 ATACATAACTTACACAACTTAAATA
* *
5123275 ATACATAACTTACATAACTTACATA
1 ATACATAACTTACACAACTTAAATA
5123300 ACCTACATAA
1 A--TACATAA
5123310 TACATAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 24 0.77
27 7 0.23
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (25 bp):
ATACATAACTTACACAACTTAAATA
Found at i:5123289 original size:34 final size:34
Alignment explanation
Indices: 5123242--5123316 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
5123232 ACACATTACT
* *
5123242 TACATAGCATACATAACTTACACAACTTAAATAA
1 TACATAACATACATAACTTACACAACCTAAATAA
* * *
5123276 TACATAACTTACATAACTTACATAACCTACATAA
1 TACATAACATACATAACTTACACAACCTAAATAA
5123310 TACATAA
1 TACATAA
5123317 TAACTTACAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.49, C:0.21, G:0.01, T:0.28
Consensus pattern (34 bp):
TACATAACATACATAACTTACACAACCTAAATAA
Found at i:5123335 original size:35 final size:36
Alignment explanation
Indices: 5123271--5123342 Score: 103
Period size: 35 Copynumber: 2.0 Consensus size: 36
5123261 ACACAACTTA
*
5123271 AATAATACATAACTTACATAACTTACATAACCTACAT
1 AATAATACATAACTTACA-AACTTACATAACATACAT
5123308 AATACATA-ATAACTTAC-AACTTACATAACATACAT
1 AATA-ATACATAACTTACAAACTTACATAACATACAT
5123343 TACTTTGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 17 0.52
37 13 0.39
38 3 0.09
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (36 bp):
AATAATACATAACTTACAAACTTACATAACATACAT
Found at i:5123354 original size:62 final size:62
Alignment explanation
Indices: 5123249--5123416 Score: 179
Period size: 62 Copynumber: 2.7 Consensus size: 62
5123239 ACTTACATAG
5123249 CATACATAACTTACACAACTTAAATAATACATAACTTACATAACTTACATAACCTACATAATA
1 CATACATAACTTA-ACAACTTAAATAATACATAACTTACATAACTTACATAACCTACATAATA
* * ** *
5123312 CATA-ATAACTT-ACAACTTACATAACATACATTACTTTGATAACTTACATAACTTACATAATA
1 CATACATAACTTAACAACTTAAAT-A-ATACATAACTTACATAACTTACATAACCTACATAATA
**
5123374 C--AC--AACTTAA-ATAGCTTACTTAATACATAACTTACATAACTTA
1 CATACATAACTTAACA-A-CTTAAATAATACATAACTTACATAACTTA
5123417 TACACGTACA
Statistics
Matches: 90, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
59 24 0.27
60 14 0.16
61 7 0.08
62 41 0.46
63 4 0.04
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (62 bp):
CATACATAACTTAACAACTTAAATAATACATAACTTACATAACTTACATAACCTACATAATA
Done.