Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 157 of 218
Found at i:47749260 original size:25 final size:24
Alignment explanation
Indices: 47749124--47749276 Score: 85
Period size: 25 Copynumber: 6.2 Consensus size: 24
47749114 TGCCATAAAA
47749124 GCTTTCCAAATAATATGCCACATAG
1 GCTTTCCAAATAATA-GCCACATAG
** * * * *
47749149 AATTTTCAGATAAGTAGCCACAAAA
1 GCTTTCCAAATAA-TAGCCACATAG
*
47749174 GCTTCCCAAATAATA-CATCACATAG
1 GCTTTCCAAATAATAGC--CACATAG
* ** *
47749199 GATTT-CAGGTAACTAGCCACAAAG
1 GCTTTCCAAATAA-TAGCCACATAG
*
47749223 GCTTCCCAAATAATATGCCACATAG
1 GCTTTCCAAATAATA-GCCACATAG
* * * *
47749248 GCTTTTCAGATAACTAGCCATAAAG
1 GCTTTCCAAATAA-TAGCCACATAG
47749273 GCTT
1 GCTT
47749277 ATTTTGTTTG
Statistics
Matches: 92, Mismatches: 28, Indels: 16
0.68 0.21 0.12
Matches are distributed among these distances:
23 1 0.01
24 18 0.20
25 68 0.74
26 5 0.05
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (24 bp):
GCTTTCCAAATAATAGCCACATAG
Found at i:47752201 original size:30 final size:30
Alignment explanation
Indices: 47752167--47752230 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
47752157 TCGTAAGCTC
47752167 GATTTAAGTCCAATCTTGCACGTATAACAT
1 GATTTAAGTCCAATCTTGCACGTATAACAT
47752197 GATTTAAGTCCAATCTTGCACGTATAACAT
1 GATTTAAGTCCAATCTTGCACGTATAACAT
47752227 GATT
1 GATT
47752231 GCTTTAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (30 bp):
GATTTAAGTCCAATCTTGCACGTATAACAT
Found at i:47752858 original size:24 final size:24
Alignment explanation
Indices: 47752807--47752858 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
47752797 TCCAGCTAGA
* * *
47752807 GATGAGTTTAGAGGCAAGCCAGAT
1 GATGAGTTTAGAGGCAAGACAAAC
47752831 GATGAGTTTAGAGGCAAGACAAAC
1 GATGAGTTTAGAGGCAAGACAAAC
47752855 GATG
1 GATG
47752859 GTCCAGCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.33, T:0.19
Consensus pattern (24 bp):
GATGAGTTTAGAGGCAAGACAAAC
Found at i:47759304 original size:23 final size:23
Alignment explanation
Indices: 47759278--47759358 Score: 101
Period size: 23 Copynumber: 3.5 Consensus size: 23
47759268 TCACCTCAAG
*
47759278 GGCATTACAGAATATGCCGA-AAA
1 GGCATCACAGAATATGCC-ACAAA
*
47759301 GGCATCACAGAATATGCCACAAC
1 GGCATCACAGAATATGCCACAAA
*
47759324 GGCATCACAGAATACGCCACAAA
1 GGCATCACAGAATATGCCACAAA
* *
47759347 GACATCATAGAA
1 GGCATCACAGAA
47759359 ACACCACAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
22 1 0.02
23 50 0.98
ACGTcount: A:0.43, C:0.25, G:0.19, T:0.14
Consensus pattern (23 bp):
GGCATCACAGAATATGCCACAAA
Found at i:47759368 original size:22 final size:23
Alignment explanation
Indices: 47759298--47759369 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
47759288 AATATGCCGA
* **
47759298 AAAGGCATCACAGAATATGCCAC
1 AAAGACATCACAGAATACACCAC
* * *
47759321 AACGGCATCACAGAATACGCCAC
1 AAAGACATCACAGAATACACCAC
*
47759344 AAAGACATCATAGAA-ACACCAC
1 AAAGACATCACAGAATACACCAC
47759366 AAAG
1 AAAG
47759370 GTTTCTAAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 10 0.23
23 33 0.77
ACGTcount: A:0.47, C:0.28, G:0.15, T:0.10
Consensus pattern (23 bp):
AAAGACATCACAGAATACACCAC
Found at i:47764511 original size:98 final size:99
Alignment explanation
Indices: 47764388--47764584 Score: 378
Period size: 98 Copynumber: 2.0 Consensus size: 99
47764378 TATTCTTAGG
47764388 ACATTATTAAAAAAACAGTTTATTTATACACACAGAAAAGAAACTGAAATAATAATGGTAACGCC
1 ACATTATTAAAAAAACAGTTTATTTATACACACAGAAAAGAAACTGAAATAATAATGGTAACGCC
47764453 TTATATTAATAAACATGATAAATCAAGTATGTTA
66 TTATATTAATAAACATGATAAATCAAGTATGTTA
*
47764487 ACATTATT-AGAAAACAGTTTATTTATACACACAGAAAAGAAACTGAAATAATAATGGTAACGCC
1 ACATTATTAAAAAAACAGTTTATTTATACACACAGAAAAGAAACTGAAATAATAATGGTAACGCC
47764551 TTATATTAATAAACATGATAAATCAAGTATGTTA
66 TTATATTAATAAACATGATAAATCAAGTATGTTA
47764585 TTACAACCAT
Statistics
Matches: 97, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
98 89 0.92
99 8 0.08
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (99 bp):
ACATTATTAAAAAAACAGTTTATTTATACACACAGAAAAGAAACTGAAATAATAATGGTAACGCC
TTATATTAATAAACATGATAAATCAAGTATGTTA
Found at i:47767597 original size:15 final size:14
Alignment explanation
Indices: 47767577--47767606 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
47767567 ATTACGGAAG
47767577 ATCAGTCTCACTACT
1 ATCAGTCTCAC-ACT
47767592 ATCAGTCTCACACT
1 ATCAGTCTCACACT
47767606 A
1 A
47767607 GGATGGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (14 bp):
ATCAGTCTCACACT
Found at i:47767719 original size:75 final size:75
Alignment explanation
Indices: 47767622--47767800 Score: 211
Period size: 75 Copynumber: 2.4 Consensus size: 75
47767612 GAATAACAAC
* *
47767622 TCACCATAAAA-GATTTCCAGAGAATTCTCCACAAAGGCTTTCCAAATG-ATATGCCAC-AAGGA
1 TCACCA-AAAAGGCTTTCCAGAGAATTCTCCACAAAAGCTTTCCAAA-GAATATGCCACAAAGG-
*
47767684 CTTTTCAAAGAAT
63 CTTTCCAAAGAAT
* * * *
47767697 TCACCAAAAAGGCTTTCCAGAGAATTCACTATAAAAGCTTTCCAAAGAATTTGCCACAAAGGCTT
1 TCACCAAAAAGGCTTTCCAGAGAATTCTCCACAAAAGCTTTCCAAAGAATATGCCACAAAGGCTT
47767762 TCCAAAGAAT
66 TCCAAAGAAT
* * * *
47767772 TTACCACAAAGGCTTTCTAGCGAATTCTC
1 TCACCAAAAAGGCTTTCCAGAGAATTCTC
47767801 AACTTAACAG
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
74 5 0.06
75 80 0.90
76 4 0.04
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.26
Consensus pattern (75 bp):
TCACCAAAAAGGCTTTCCAGAGAATTCTCCACAAAAGCTTTCCAAAGAATATGCCACAAAGGCTT
TCCAAAGAAT
Found at i:47767797 original size:25 final size:25
Alignment explanation
Indices: 47767635--47767788 Score: 152
Period size: 25 Copynumber: 6.2 Consensus size: 25
47767625 CCATAAAAGA
* *
47767635 TTTCCAGAGAATTCTCCACAAAGGC
1 TTTCCAAAGAATTCACCACAAAGGC
*
47767660 TTTCCAAATG-ATAT-GCCAC-AAGGAC
1 TTTCCAAA-GAAT-TCACCACAAAGG-C
* *
47767685 TTTTCAAAGAATTCACCAAAAAGGC
1 TTTCCAAAGAATTCACCACAAAGGC
* * * *
47767710 TTTCCAGAGAATTCACTATAAAAGC
1 TTTCCAAAGAATTCACCACAAAGGC
**
47767735 TTTCCAAAGAATTTGCCACAAAGGC
1 TTTCCAAAGAATTCACCACAAAGGC
*
47767760 TTTCCAAAGAATTTACCACAAAGGC
1 TTTCCAAAGAATTCACCACAAAGGC
47767785 TTTC
1 TTTC
47767789 TAGCGAATTC
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
24 6 0.06
25 94 0.89
26 6 0.06
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (25 bp):
TTTCCAAAGAATTCACCACAAAGGC
Found at i:47778846 original size:3 final size:3
Alignment explanation
Indices: 47778838--47778956 Score: 157
Period size: 3 Copynumber: 39.3 Consensus size: 3
47778828 AATTAGTTAA
47778838 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC-T TCT
* * * * * * *
47778884 TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCA TCA TCA TCA TCA TCA
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
47778932 TCA TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
47778957 TTTTGAATAA
Statistics
Matches: 111, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
3 108 0.97
4 3 0.03
ACGTcount: A:0.06, C:0.32, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:47792950 original size:18 final size:18
Alignment explanation
Indices: 47792929--47792967 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
47792919 TTAGTTGTAA
47792929 TTTAGATTTTCTTTTAGT
1 TTTAGATTTTCTTTTAGT
* *
47792947 TTTAGTTTTTCTTTTTGT
1 TTTAGATTTTCTTTTAGT
47792965 TTT
1 TTT
47792968 CTATTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.05, G:0.10, T:0.74
Consensus pattern (18 bp):
TTTAGATTTTCTTTTAGT
Found at i:47792974 original size:18 final size:19
Alignment explanation
Indices: 47792934--47792980 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
47792924 TGTAATTTAG
* *
47792934 ATTTTCTTTTAGTTTTAGT
1 ATTTTCTTTTTGTTTTACT
47792953 -TTTTCTTTTTGTTTT-CT
1 ATTTTCTTTTTGTTTTACT
*
47792970 ATTTTATTTTT
1 ATTTTCTTTTT
47792981 CACGAGGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (19 bp):
ATTTTCTTTTTGTTTTACT
Found at i:47799183 original size:19 final size:17
Alignment explanation
Indices: 47799159--47799211 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
47799149 TTTAAGATAA
47799159 TAAATAAAAATAATTTT
1 TAAATAAAAATAATTTT
47799176 GGTAAAT-AAAAT-ATTTT
1 --TAAATAAAAATAATTTT
*
47799193 CAAATAAAAAGTAATTTT
1 TAAATAAAAA-TAATTTT
47799211 T
1 T
47799212 CATAAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 4 0.14
16 4 0.14
17 6 0.21
18 10 0.34
19 5 0.17
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.40
Consensus pattern (17 bp):
TAAATAAAAATAATTTT
Found at i:47805269 original size:23 final size:23
Alignment explanation
Indices: 47805222--47805298 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
47805212 TACAACACCT
**
47805222 AAGTGCCTG-AA-ACGACACACG
1 AAGTGCCTGAAATACGACACATA
*
47805243 AAGTGCCTGAAATATGACACATA
1 AAGTGCCTGAAATACGACACATA
*
47805266 AAGTGCTTGAAATACGACACATA
1 AAGTGCCTGAAATACGACACATA
47805289 AAGTGCCTGA
1 AAGTGCCTGA
47805299 TCGGCAAAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
21 9 0.19
22 2 0.04
23 37 0.77
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.18
Consensus pattern (23 bp):
AAGTGCCTGAAATACGACACATA
Found at i:47805647 original size:26 final size:25
Alignment explanation
Indices: 47805616--47805665 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
47805606 TAGTTCAATA
47805616 ATTCAATTCAAAC-CATTTCAATTTCT
1 ATTCAA-T-AAACACATTTCAATTTCT
*
47805642 ATTCAATAATCACATTTCAATTTC
1 ATTCAATAAACACATTTCAATTTC
47805666 ACTTTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.59
26 6 0.27
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTCAATAAACACATTTCAATTTCT
Found at i:47806053 original size:11 final size:11
Alignment explanation
Indices: 47806037--47806072 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
47806027 TTAAATTTTC
47806037 CTATTCAATTT
1 CTATTCAATTT
47806048 CTATTCAATTT
1 CTATTCAATTT
47806059 CTATTCAATTT
1 CTATTCAATTT
47806070 CTA
1 CTA
47806073 CCTTAAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.00, T:0.53
Consensus pattern (11 bp):
CTATTCAATTT
Found at i:47806485 original size:11 final size:11
Alignment explanation
Indices: 47806465--47806499 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
47806455 AAAACCCTAG
47806465 TTTTTCCTTTTC
1 TTTTT-CTTTTC
47806477 TTTTTCTTTTC
1 TTTTTCTTTTC
47806488 TTCTTTCTTTTC
1 TT-TTTCTTTTC
47806500 CCCTGTTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:47810393 original size:22 final size:21
Alignment explanation
Indices: 47810360--47810414 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 21
47810350 CAAGTACTCC
*
47810360 CACAACTAAATCAACAGTTAA
1 CACAACTAAATCAAAAGTTAA
47810381 CACAAGCTAAATCAAAAGTTAA
1 CACAA-CTAAATCAAAAGTTAA
47810403 CACAACCTAAAT
1 CACAA-CTAAAT
47810415 TAGTAACGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.53, C:0.24, G:0.05, T:0.18
Consensus pattern (21 bp):
CACAACTAAATCAAAAGTTAA
Found at i:47810958 original size:5 final size:5
Alignment explanation
Indices: 47810948--47810983 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
47810938 GGGGATTTAG
*
47810948 AAAAT AAAAT AAAAT AAAAT AAAAT -AATT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
47810984 TAAAAGATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 3 0.11
5 25 0.89
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:47810968 original size:15 final size:14
Alignment explanation
Indices: 47810948--47810983 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
47810938 GGGGATTTAG
47810948 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
*
47810963 AAAATAAAATAATT
1 AAAATAAAATAAAT
47810977 AAAATAA
1 AAAATAA
47810984 TAAAAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:47835288 original size:28 final size:28
Alignment explanation
Indices: 47835256--47835314 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
47835246 AAAATTTAGG
*
47835256 ATTTAAGGTCCAAGATTCAAGTTAAAAA
1 ATTTAAGGTACAAGATTCAAGTTAAAAA
*
47835284 ATTTAGGGTACAAGATTCAAGTTAAAAA
1 ATTTAAGGTACAAGATTCAAGTTAAAAA
47835312 ATT
1 ATT
47835315 ACTAAAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (28 bp):
ATTTAAGGTACAAGATTCAAGTTAAAAA
Found at i:47835454 original size:54 final size:53
Alignment explanation
Indices: 47835368--47835473 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
47835358 CATTAAATAA
* *
47835368 TTAATAAAAGATATAAAATGATATAATATCTTTGTTTCATATAAATTTTTTTCC
1 TTAATAAAAGATATAAAATGACATAATATCTTTATTTCATAT-AATTTTTTTCC
* * * *
47835422 TTAATAAGAGATATAAAATGACGTAATGTCTTTATTTCGTATAATTTTTTTC
1 TTAATAAAAGATATAAAATGACATAATATCTTTATTTCATATAATTTTTTTC
47835474 AGAATATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 10 0.22
54 36 0.78
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (53 bp):
TTAATAAAAGATATAAAATGACATAATATCTTTATTTCATATAATTTTTTTCC
Found at i:47836552 original size:29 final size:29
Alignment explanation
Indices: 47836519--47836601 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
47836509 TCCACATTGA
*
47836519 CACGAATTCTCAACGAACAAATTCTTTGT
1 CACGAACTCTCAACGAACAAATTCTTTGT
*
47836548 CACGAACTCTCAATGAACAAATTCTTTGT
1 CACGAACTCTCAACGAACAAATTCTTTGT
* *
47836577 CATGAACTCTCAACGAACAAGTTCT
1 CACGAACTCTCAACGAACAAATTCT
47836602 CTACCTCTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (29 bp):
CACGAACTCTCAACGAACAAATTCTTTGT
Found at i:47842518 original size:49 final size:49
Alignment explanation
Indices: 47842445--47842538 Score: 143
Period size: 49 Copynumber: 1.9 Consensus size: 49
47842435 TGCTCTGCAA
* * *
47842445 TGCTAAACTTGGCCTTCCATTGTCTACACTTTTATCACTATTTATACAT
1 TGCTAAACTTAGCCTTCCACTGTCTACACTCTTATCACTATTTATACAT
**
47842494 TGCTAAACTTAGTTTTCCACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAACTTAGCCTTCCACTGTCTACACTCTTATCACTATTTAT
47842539 CCCTTCTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.44
Consensus pattern (49 bp):
TGCTAAACTTAGCCTTCCACTGTCTACACTCTTATCACTATTTATACAT
Found at i:47845093 original size:16 final size:17
Alignment explanation
Indices: 47845072--47845112 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
47845062 TTTTTATTTC
*
47845072 TTTATTATGTTT-TCAT
1 TTTATTATCTTTATCAT
47845088 TTTATTATCTTTATCAT
1 TTTATTATCTTTATCAT
47845105 TATTATTA
1 T-TTATTA
47845113 AAGTTACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.50
17 5 0.23
18 6 0.27
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTATTATCTTTATCAT
Found at i:47845230 original size:43 final size:43
Alignment explanation
Indices: 47845168--47845435 Score: 351
Period size: 43 Copynumber: 6.2 Consensus size: 43
47845158 AGTAAAAAAT
* *
47845168 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAAC
* * * * *
47845211 GCCACTAAAGACCATGACCTTTAGCAGCCCTTTTATCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAAC
*
47845254 GCCGCTAAAAACCAAGACCTTTAGCGGCGCTTTTACCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAAC
* *
47845297 GCCGCGAAAGACCAAGACCTTTAGCTGCGCTTTTACCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAAC
* * *
47845340 GCCGCTAAAGAACAAGACCTTTAGCGTCGCTTTCT-CCAAAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-TACCACAAAC
* * *
47845383 GCCGCTAAAGAACAAGACCTTTAGCGGCACTTTCT-CCAAAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-TACCACAAAC
*
47845426 GCCACTAAAG
1 GCCGCTAAAG
47845436 GTCACGAAAA
Statistics
Matches: 201, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 200 1.00
44 1 0.00
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.19
Consensus pattern (43 bp):
GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAAC
Found at i:47846509 original size:91 final size:91
Alignment explanation
Indices: 47846354--47846694 Score: 567
Period size: 91 Copynumber: 3.7 Consensus size: 91
47846344 CTTTAACACT
* ** *
47846354 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA-TATCAATTAACAACATTTAT
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
*
47846418 ACACCACAATTACAGCGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
*
47846445 TCAATTTCCAGCAACTAAACACTTCAATTTGCATCACTTAAACACTTCAATTAACAACATTTATA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
47846510 CACCTCAATTACAGCGATAAAACATC
66 CACCTCAATTACAGCGATAAAACATC
47846536 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
*
47846601 CAACTCAATTACAGCGATAAAACATC
66 CACCTCAATTACAGCGATAAAACATC
* * * *
47846627 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
47846692 CAC
66 CAC
47846695 TTAAATTTGC
Statistics
Matches: 236, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
91 235 1.00
92 1 0.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.29
Consensus pattern (91 bp):
TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
CACCTCAATTACAGCGATAAAACATC
Found at i:47846563 original size:114 final size:114
Alignment explanation
Indices: 47846445--47847066 Score: 633
Period size: 114 Copynumber: 5.5 Consensus size: 114
47846435 ATAAAACATC
* *
47846445 TCAATTTCCAGCAACTAAACACTTCAATTTGCATCACTTAAACACTTCAATTAACAACATTTATA
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
47846510 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
66 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
* ** * * * * *
47846559 TCAATTTGCAGC-ACTTAAACACTTCAATTAACAACATTTATACAAC-TCAATT-ACAGCGA-TA
1 TCAATTTACAGCAAC-TAAACACTTCAATTTGCAGCACTTAAAC-ACTTCAATTAACAAC-ATTT
* * * * *
47846620 AAACATCTCAATTTCCAGCAACTAAATAC-T-TCAATTTGCAGC-ACTTAAACACT
63 ATACACCTCAA-TTACAGCGA-TAAA-ACATCTCAATTTCCAGCAAC-TAAACACT
** *
47846673 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAT
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
*
47846737 ACACCTCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
65 ACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
** * *
47846787 TCAATTTACAGCAGTTAAACACTTAAATTTGCAGCAGTTAAACA-TATCAATTAACAACATTTAT
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
*
47846851 ACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACT
65 ACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
* * * * ** * *
47846901 TCAATTTGCAGC-ACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAACACTTAA
1 TCAATTTACAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTAT
** * * * * * **
47846965 ACATATCAATTAACAAC-ATTTATACACCTCAA-TTACAGTGA-TAAA-ACAT
65 ACACCTCAATT-ACAGCGA-TAAAACATCTCAATTTCCAGCAACTAAACAC-T
* *
47847014 CTCAATTTCCAGCAACTAAACACTTCAATTTGTAGCACTTAAACACTTCAATT
1 -TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATT
47847067 TGCAGCACTT
Statistics
Matches: 427, Mismatches: 59, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
112 4 0.01
113 29 0.07
114 352 0.82
115 40 0.09
116 2 0.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.30
Consensus pattern (114 bp):
TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
Found at i:47846775 original size:137 final size:137
Alignment explanation
Indices: 47846536--47847230 Score: 492
Period size: 137 Copynumber: 5.1 Consensus size: 137
47846526 ATAAAACATC
* * *
47846536 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
1 TCAATTTACAGCAATTAAACACTTAAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
* *
47846601 CAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
66 CAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAGCACTT
47846666 AAACACT
131 AAACACT
*
47846673 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAT
1 TCAATTTACAGCAATTAAACACTTAAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
* * *
47846737 ACACCTCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAGCAGT
65 ACAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAGCACT
47846802 TAAACACT
130 TAAACACT
* * * * ** * * * * * *
47846810 TAAATTTGCAGCAGTTAAACA-TATCAATTAACAACATTTATACACCTCAATT-ACAGCGA-TAA
1 TCAATTTACAGCAATTAAACACT-TAAATTTGCAGCACTTAAACACTTCAATTAACAAC-ATTTA
* * * * *
47846872 AACATCTCAATTTCCAGCAACTAAATAC-T-TCAATTTGCAGC-ACTTAAACACTTCAATTTACA
64 TACAACTCAA-TTACAGCGA-TAAA-ACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTACA
*
47846934 GCATTTAAACACT
125 GCACTTAAACACT
* * * * * ** * * * * ** *
47846947 TAAATTTGCAACACTTAAACA-TATCAATTAACAACATTTATACACCTCAATT-ACAGTGA-TAA
1 TCAATTTACAGCAATTAAACACT-TAAATTTGCAGCACTTAAACACTTCAATTAACA-ACATTTA
* * * * ** *
47847009 AACATCTCAATTTCCAGCAACT-AAACA-CTTCAATTTGTAGC-ACTTAAACACTTCAATTTGCA
64 TACAACTCAA-TTACAGCGA-TAAAACATC-TCAATTTCCAGCAAC-TAAACACTTCAATTTACA
47847071 GCACTTAAACACT
125 GCACTTAAACACT
* * ** * * * * * *
47847084 TCAATTTACAGCACTTAAACA-TATCAATTAACAACATTTATACACCTCAATT-ACAGCGA-TAA
1 TCAATTTACAGCAATTAAACACT-TAAATTTGCAGCACTTAAACACTTCAATTAACAAC-ATTTA
* * * * * *
47847146 AACATCTCAATTTCCAGCAACTAAATAC-T-TCAATTTGCAAC-ACTTAAACACTTCAATTTACA
64 TACAACTCAA-TTACAGCGA-TAAA-ACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTACA
*
47847208 GCATTTAAACACT
125 GCACTTAAACACT
*
47847221 TAAATTTACA
1 TCAATTTACA
47847231 AATCCACCAT
Statistics
Matches: 497, Mismatches: 45, Indels: 32
0.87 0.08 0.06
Matches are distributed among these distances:
135 2 0.00
136 20 0.04
137 464 0.93
138 7 0.01
139 4 0.01
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (137 bp):
TCAATTTACAGCAATTAAACACTTAAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
CAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAGCACTT
AAACACT
Found at i:47846840 original size:251 final size:251
Alignment explanation
Indices: 47846536--47847218 Score: 984
Period size: 251 Copynumber: 2.7 Consensus size: 251
47846526 ATAAAACATC
* *
47846536 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
47846601 CAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
66 CAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
47846666 AAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAAC
131 AAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAAC
*
47846731 ATTTATACACCTCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
196 ATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
* * *
47846787 TCAATTTACAGCAGTTAAACACTTAAATTTGCAGCAGTTAAACA-TATCAATTAACAACATTTAT
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
*
47846851 ACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
65 ACAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
*
47846916 TAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAACACTTAAACATATCAATTAACAA
130 TAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAA
*
47846981 CATTTATACACCTCAATTACAGTGATAAAACATCTCAATTTCCAGCAACTAAACACT
195 CATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
** * * * * *
47847038 TCAATTTGTAGCACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCACTTAAA
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
* * * * * * *
47847103 CATA-TCAATTAACAAC-ATTTATACACCTCAA-TTACAGCGA-TAAA-ACATCTCAATTTCCAG
66 CA-ACTCAATT-ACAGCGA-TAAAACATCTCAATTTCCAGCAACTAAATAC-T-TCAATTTGCAG
* * * * * * *
47847163 CAAC-TAAATACTTCAATTTGCAACACTTAAACACTTCAATTTACAGCATTTAAACA
126 C-ACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACA
47847219 CTTAAATTTA
Statistics
Matches: 390, Mismatches: 34, Indels: 16
0.89 0.08 0.04
Matches are distributed among these distances:
249 2 0.01
250 6 0.02
251 365 0.94
252 17 0.04
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.30
Consensus pattern (251 bp):
TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTATA
CAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
AAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAAC
ATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACT
Found at i:47847111 original size:114 final size:115
Alignment explanation
Indices: 47846348--47847218 Score: 598
Period size: 114 Copynumber: 7.6 Consensus size: 115
47846338 GTAGCACTTT
* * * * * * *
47846348 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA-TATCAATTAACAAC
1 AACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACACTTAAACACT-TCAATTTACAGC
* * * * *
47846412 -ATTTATACACCACAA-TTACAGCGA-TAAAACATCTCAATTTCCAGCAACTA
65 GA-TTAAACATCTCAATTTACAGCAACTAAAACA-CTCAATTTACAGCAACTA
* * * * *
47846462 AACACTTCAATTTGCATCACTTAAACACTTCAATTAACAACATTTATACACCTCAA-TTACAGCG
1 AACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACACTTAAACACTTCAATTTACAGCG
* * *
47846526 ATAAAACATCTCAATTTCCAGCAACT-AAACACTTCAATTTGCAGC-ACTTA
66 ATTAAACATCTCAATTTACAGCAACTAAAACAC-TCAATTTACAGCAAC-TA
** * * * * * *
47846576 AACACTTCAATTAACAACATTTATACAAC-TCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCA
1 AACACTTCAATTTGCAGCACTTAAAC-ACTTCAATTTACAAC-ACTTAAACACT-TCAATTTACA
* * * * * **
47846637 GCAACTAAATA-CTTCAATTTGCAGC-ACTTAAACACTTCAATTTACAGCATTTA
63 GCGATTAAACATC-TCAATTTACAGCAACTAAAACAC-TCAATTTACAGCAACTA
* * * * * *
47846690 AACACTTAAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTATACACCTCAA-TTATAGC
1 AACACTTCAATTTGCAGCACTTAAACACT-TCAATTTACAACACTTAAACACTTCAATTTACAGC
* * **
47846753 GATAAAACATCTCAATTTCCAGCAACT-AAACACTTCAATTTACAGCAGTTA
65 GATTAAACATCTCAATTTACAGCAACTAAAACAC-TCAATTTACAGCAACTA
* * * * * *
47846804 AACACTTAAATTTGCAGCAGTTAAACA-TATCAATTAACAACATTTATACACCTCAA-TTACAGC
1 AACACTTCAATTTGCAGCACTTAAACACT-TCAATTTACAACACTTAAACACTTCAATTTACAGC
* * * *
47846867 GATAAAACATCTCAATTTCCAGCAACTAAATAC-TTCAATTTGCAGC-ACTTA
65 GATTAAACATCTCAATTTACAGCAACTAAA-ACACTCAATTTACAGCAAC-TA
* * * * * *
47846918 AACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAACACTTAAACA-TATCAATTAACAAC
1 AACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACACTTAAACACT-TCAATTTACAGC
* * ** *
47846982 -ATTTATACACCTCAA-TTACAGTGA-TAAAACATCTCAATTTCCAGCAACTA
65 GA-TTAAACATCTCAATTTACAGCAACTAAAACA-CTCAATTTACAGCAACTA
* * *
47847032 AACACTTCAATTTGTAGCACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGC-
1 AACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACACTTAAACACTTCAATTTACAGCG
* * * * * * *
47847096 ACTTAAACATATCAATTAACAAC-ATTTATACACCTCAA-TTACAGCGA-TA
66 A-TTAAACATCTCAATTTACAGCAACTAAAACA-CTCAATTTACAGCAACTA
* * *
47847145 AA-ACATCTCAATTTCCAGCAAC-TAAATACTTCAATTTGCAACACTTAAACACTTCAATTTACA
1 AACAC-T-TCAATTTGCAGC-ACTTAAACACTTCAATTTACAACACTTAAACACTTCAATTTACA
47847208 GC-ATTTAAACA
63 GCGA-TTAAACA
47847219 CTTAAATTTA
Statistics
Matches: 615, Mismatches: 106, Indels: 72
0.78 0.13 0.09
Matches are distributed among these distances:
112 4 0.01
113 45 0.07
114 506 0.82
115 58 0.09
116 2 0.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (115 bp):
AACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACACTTAAACACTTCAATTTACAGCG
ATTAAACATCTCAATTTACAGCAACTAAAACACTCAATTTACAGCAACTA
Found at i:47853735 original size:19 final size:19
Alignment explanation
Indices: 47853711--47853748 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
47853701 AAAGCAATGG
47853711 TAGTTT-TAATTATAGTTAT
1 TAGTTTCTAATTAT-GTTAT
*
47853730 TAGTTTCTAGTTATGTTAT
1 TAGTTTCTAATTATGTTAT
47853749 GATGTATGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (19 bp):
TAGTTTCTAATTATGTTAT
Found at i:47857299 original size:19 final size:19
Alignment explanation
Indices: 47857275--47857314 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
47857265 AACTAAGTCG
47857275 ATTTGTGATATTTATAACA
1 ATTTGTGATATTTATAACA
47857294 ATTTGTGATATTTATAACA
1 ATTTGTGATATTTATAACA
47857313 AT
1 AT
47857315 AAGTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (19 bp):
ATTTGTGATATTTATAACA
Found at i:47858411 original size:40 final size:40
Alignment explanation
Indices: 47858343--47858421 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
47858333 TACGTGGACA
* *
47858343 CAAAGCGCGCTTACGAGGATGCGATTTGTTGCCACGTAGG
1 CAAAGCGCGCTGACGAGGACGCGATTTGTTGCCACGTAGG
*
47858383 CAAAGCGCGCTGACGTGGACGC-ATTTTGTTGCCACGTAG
1 CAAAGCGCGCTGACGAGGACGCGA-TTTGTTGCCACGTAG
47858422 CGTGCCCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 1 0.03
40 34 0.97
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.23
Consensus pattern (40 bp):
CAAAGCGCGCTGACGAGGACGCGATTTGTTGCCACGTAGG
Found at i:47858856 original size:125 final size:125
Alignment explanation
Indices: 47858632--47859069 Score: 705
Period size: 125 Copynumber: 3.5 Consensus size: 125
47858622 GATAAAATCA
* * * *
47858632 AAGCAGGATGCTTTATCAGAAGAATTTCTGTAATAGCGCCCACGTGGACGCACTTTTGCTATAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
47858697 AGGTCCTGAAAAAATAATTTCGAGTTGATGTTTCTGAGAAAATAGTATAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
*
47858757 AAGCAGGATGCTTTATCAGAAGACTTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
47858822 AGGTCCTGAAAAAATAATTTCGAATTGACATTTCTAAGCAAATAGTATAAAAAATGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* *
47858882 AAGCAGGATGTTTTATCAGAAGAATTTCTGAAATCCCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
47858947 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAATATAAAAAACACTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
47859007 AAGCAGGATGCTTTATCAGAAGAATTTATGAAATCGCGCCCTCGTGGACACGCTTTTTCTACA
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACA
47859070 TTAGCATGTT
Statistics
Matches: 287, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 287 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:47861970 original size:19 final size:19
Alignment explanation
Indices: 47861946--47861996 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
47861936 ATCTAACATT
47861946 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
*
47861965 TTG-T--T-AATTGTATTAA
1 TTGTTAGTAAAAT-TATTAA
47861981 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
47861997 CAAATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 1 0.04
18 1 0.04
19 7 0.28
20 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:47862090 original size:102 final size:102
Alignment explanation
Indices: 47861912--47862106 Score: 354
Period size: 102 Copynumber: 1.9 Consensus size: 102
47861902 ATATTTTTTT
47861912 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
1 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
47861977 TTAATTGTTAGTAAAATTATCAAATTATTAATTGTTA
66 TTAATTGTTAGTAAAATTATCAAATTATTAATTGTTA
* *
47862014 GTACCAGTCAAAACATTTTGTAAAATCTAACATTTTGTTAGTCAAATTATTAATTGTTAATTGTA
1 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
* *
47862079 TTAATTTTTAGTAAATTTATCAAATTAT
66 TTAATTGTTAGTAAAATTATCAAATTAT
47862107 ATCATATTAG
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.45
Consensus pattern (102 bp):
GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
TTAATTGTTAGTAAAATTATCAAATTATTAATTGTTA
Found at i:47862193 original size:27 final size:22
Alignment explanation
Indices: 47862162--47862254 Score: 120
Period size: 21 Copynumber: 4.1 Consensus size: 22
47862152 GGGTTTTTGT
47862162 GTTTTTAAGTTAAGGGTTACAGTTAG
1 GTTTTTAAGTTAAGGGTT--AG--AG
47862188 GATTTTTAAGTTAAGGGTTAG-G
1 G-TTTTTAAGTTAAGGGTTAGAG
47862210 GTTTTTAAGTTAAGGGTTAGA-
1 GTTTTTAAGTTAAGGGTTAGAG
47862231 GTTTTTAAGTTAAGGGTTAG-G
1 GTTTTTAAGTTAAGGGTTAGAG
47862252 GTT
1 GTT
47862255 AGGGTTTTTG
Statistics
Matches: 64, Mismatches: 0, Indels: 11
0.85 0.00 0.15
Matches are distributed among these distances:
21 42 0.66
22 2 0.03
25 2 0.03
26 1 0.02
27 17 0.27
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.43
Consensus pattern (22 bp):
GTTTTTAAGTTAAGGGTTAGAG
Found at i:47862236 original size:42 final size:46
Alignment explanation
Indices: 47862162--47862254 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 46
47862152 GGGTTTTTGT
47862162 GTTTTTAAGTTAAGGGTTACAGTTAGGATTTTTAAGTTAAGGGTTAGG
1 GTTTTTAAGTTAAGGGTTA-AG-TAGGATTTTTAAGTTAAGGGTTAGG
47862210 GTTTTTAAGTTAAGGGTT-AG-A-G-TTTTTAAGTTAAGGGTTAGG
1 GTTTTTAAGTTAAGGGTTAAGTAGGATTTTTAAGTTAAGGGTTAGG
47862252 GTT
1 GTT
47862255 AGGGTTTTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
42 23 0.51
43 1 0.02
44 1 0.02
46 2 0.04
48 18 0.40
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.43
Consensus pattern (46 bp):
GTTTTTAAGTTAAGGGTTAAGTAGGATTTTTAAGTTAAGGGTTAGG
Found at i:47862835 original size:18 final size:18
Alignment explanation
Indices: 47862808--47862845 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
47862798 GAAAAATGAA
* *
47862808 ACATATAAGGGTTAGGAT
1 ACATAAAAGGGCTAGGAT
47862826 ACATAAAAGGGCTAGGAT
1 ACATAAAAGGGCTAGGAT
47862844 AC
1 AC
47862846 GTACCTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (18 bp):
ACATAAAAGGGCTAGGAT
Found at i:47863718 original size:21 final size:21
Alignment explanation
Indices: 47863678--47863718 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
47863668 CTATTATTTT
*
47863678 TAAAAATCTACATAATAATTG
1 TAAAAATCTACATAAAAATTG
47863699 TAAAAATCTA-ATATAAAATT
1 TAAAAATCTACATA-AAAATT
47863719 TACCTCGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (21 bp):
TAAAAATCTACATAAAAATTG
Found at i:47864901 original size:40 final size:40
Alignment explanation
Indices: 47864846--47864948 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
47864836 AAAAAAATGA
47864846 CGCGTCCACGTCAGCGCGCTTTGCTTACGTGGCAACAAAT
1 CGCGTCCACGTCAGCGCGCTTTGCTTACGTGGCAACAAAT
*
47864886 CGCGTCCACTTCAGCGCGCTTTGCTTACGTGGCAACAAAT
1 CGCGTCCACGTCAGCGCGCTTTGCTTACGTGGCAACAAAT
* * *
47864926 CGCGTCCTCGTAAGCGCGTTTTG
1 CGCGTCCACGTCAGCGCGCTTTG
47864949 GGTCCACGTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.17, C:0.32, G:0.25, T:0.25
Consensus pattern (40 bp):
CGCGTCCACGTCAGCGCGCTTTGCTTACGTGGCAACAAAT
Found at i:47867103 original size:16 final size:17
Alignment explanation
Indices: 47867077--47867115 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
47867067 TATAATTAGA
47867077 TAAATTAATTTT-TCAAT
1 TAAA-TAATTTTCTCAAT
47867094 TAAATAATTTTCTCAAT
1 TAAATAATTTTCTCAAT
*
47867111 CAAAT
1 TAAAT
47867116 TTTAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATAATTTTCTCAAT
Found at i:47867515 original size:16 final size:16
Alignment explanation
Indices: 47867494--47867528 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
47867484 TTATACACTT
47867494 ATTTAGTCACGAAGTC
1 ATTTAGTCACGAAGTC
47867510 ATTTAGTCACGAAGTC
1 ATTTAGTCACGAAGTC
47867526 ATT
1 ATT
47867529 CCACTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (16 bp):
ATTTAGTCACGAAGTC
Found at i:47868584 original size:20 final size:20
Alignment explanation
Indices: 47868545--47868584 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
47868535 TGTTAATTAG
* *
47868545 ATTAAAATAAGCTTAGTTTA
1 ATTAAAATAAGATTAATTTA
*
47868565 ATTAAAGTAAGATTAATTTA
1 ATTAAAATAAGATTAATTTA
47868585 CATAATTAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (20 bp):
ATTAAAATAAGATTAATTTA
Found at i:47869003 original size:32 final size:32
Alignment explanation
Indices: 47868965--47869028 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
47868955 AATGTGAAAT
47868965 TGATTATAGAAATAAGAAATAATGTTTCCCTA
1 TGATTATAGAAATAAGAAATAATGTTTCCCTA
47868997 TGATTATAGAAATAAGAAATAATGTTTCCCTA
1 TGATTATAGAAATAAGAAATAATGTTTCCCTA
47869029 AAGGGTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (32 bp):
TGATTATAGAAATAAGAAATAATGTTTCCCTA
Found at i:47874420 original size:5 final size:5
Alignment explanation
Indices: 47874412--47874436 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
47874402 ACGAAACCTC
47874412 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
47874437 AATAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:47876445 original size:21 final size:20
Alignment explanation
Indices: 47876399--47876452 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
47876389 TGAAGCTAAA
* *
47876399 AATGGTATCAATA-CTTGAC
1 AATGGTATCGATACCTTAAC
*
47876418 AAAGGTATCGATACCTATAAC
1 AATGGTATCGATACCT-TAAC
47876439 AATGGTATCGATAC
1 AATGGTATCGATAC
47876453 TTCATGTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 11 0.38
20 2 0.07
21 16 0.55
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (20 bp):
AATGGTATCGATACCTTAAC
Found at i:47881501 original size:17 final size:17
Alignment explanation
Indices: 47881479--47881517 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
47881469 CATTACAGAC
*
47881479 ATCTGTCAACTACGGAA
1 ATCTGTCAACCACGGAA
*
47881496 ATCTGTCAACCACGGCA
1 ATCTGTCAACCACGGAA
47881513 ATCTG
1 ATCTG
47881518 GACAGCTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (17 bp):
ATCTGTCAACCACGGAA
Found at i:47886524 original size:41 final size:41
Alignment explanation
Indices: 47886479--47886623 Score: 256
Period size: 41 Copynumber: 3.5 Consensus size: 41
47886469 GACTTTAAGT
47886479 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
47886520 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
47886561 CTAGCAGGCTAAGTGCCGGTGAT-TGGAATCAGGCTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCT-GAATCAGGTTATAAAC
*
47886602 CTAGTAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
47886624 ATATGTTAAA
Statistics
Matches: 101, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 1 0.01
41 100 0.99
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:47896709 original size:12 final size:12
Alignment explanation
Indices: 47896673--47896714 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
47896663 TAAGTTAAAT
*
47896673 ATTAAAATAAG-
1 ATTAAAATATGA
47896684 ATTAAAAATGATGA
1 ATT-AAAAT-ATGA
47896698 ATTAAAATATGA
1 ATTAAAATATGA
47896710 ATTAA
1 ATTAA
47896715 TTTATCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 3 0.11
12 14 0.52
13 7 0.26
14 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (12 bp):
ATTAAAATATGA
Found at i:47898583 original size:44 final size:44
Alignment explanation
Indices: 47898503--47899045 Score: 242
Period size: 44 Copynumber: 11.7 Consensus size: 44
47898493 TTCGGTCTAT
* * * * *
47898503 TCCACCGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGC
**
47898547 TCTGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGATGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATC---TGC
* * * * * *
47898594 GATCTACTCTACTATAACTTCAGAGAGGTAAGACCCTTTATA--TT-AATCCGC
1 --TCCACTGTA--AT--C-TCAGGGAGATAAGA---TTTCTAGCTTCAATCTGC
* * * *
47898645 TCCATTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGC
* * * *
47898689 TCCGA-TGTAATCTCAAGGAGATAAGATTTCTGGTTTCAACCTGATGCGATC
1 TCC-ACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAA--T-CT--G--C
* * * * *
47898740 TACTCTATTGTAA-CTTCAGAGAGATAAGATCCTT-TA-TTTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TTCTAGCTTCAATCTGC
* * *
47898787 TCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGC
* * *
47898831 TCCGCTGTAATCTCAGGAAGATAAGATTTCTGGCTTCAATCAGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATC---T--G--C
* * * * * *
47898882 TACTCTACTGTAA-CTTTAGAGAGATAAGATCTTTTA-TTTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TTCTAGCTTCAATCTGC
* * * * *
47898929 CCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGC
** *
47898973 TCCGTTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGC
47899017 TCCACTGTAA-CATCAGGGAGATAAGATTT
1 TCCACTGTAATC-TCAGGGAGATAAGATTT
47899046 ACCGTCTTCG
Statistics
Matches: 371, Mismatches: 80, Indels: 96
0.68 0.15 0.18
Matches are distributed among these distances:
41 4 0.01
42 1 0.00
43 8 0.02
44 230 0.62
45 6 0.02
46 3 0.01
47 10 0.03
49 16 0.04
51 8 0.02
52 3 0.01
53 6 0.02
54 63 0.17
55 6 0.02
56 2 0.01
57 5 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGC
Found at i:47898698 original size:142 final size:142
Alignment explanation
Indices: 47898503--47899015 Score: 801
Period size: 142 Copynumber: 3.6 Consensus size: 142
47898493 TTCGGTCTAT
* * * *
47898503 TCCACCGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * *
47898568 TAAGATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGGTAAGACCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
*
47898633 ATATTAATCCGC
131 ATTTTAATCCGC
* * * *
47898645 TCCATTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGATGTAATCTCAAGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * *
47898710 TAAGATTTCTGGTTTCAACCTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
47898775 ATTTTAATCCGC
131 ATTTTAATCCGC
* *
47898787 TCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGAAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * *
47898852 TAAGATTTCTGGCTTCAATCAGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
47898917 ATTTTAATCCGC
131 ATTTTAATCCGC
* * * *
47898929 CCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGCTCCGTTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
47898994 TAAGATTTCTGGCTTCAATCTG
66 TAAGATTTCTGGCTTCAATCTG
47899016 CTCCACTGTA
Statistics
Matches: 336, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
142 336 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCCGC
Found at i:47899081 original size:44 final size:44
Alignment explanation
Indices: 47898962--47899069 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
47898952 GGATTACTAT
** * *
47898962 CTTCAATCTGCTCCGTTGTAATC-TCAGGGAGATAAGATTTCTGG
1 CTTCAATCTGCTCCACTATAA-CATCAGGGAGATAAGATTTCCGG
* *
47899006 CTTCAATCTGCTCCACTGTAACATCAGGGAGATAAGATTTACCGT
1 CTTCAATCTGCTCCACTATAACATCAGGGAGATAAGATTT-CCGG
* *
47899051 CTTCGATCTGCTCCGCTAT
1 CTTCAATCTGCTCCACTAT
47899070 TGCTTAGGGA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
43 1 0.02
44 36 0.65
45 18 0.33
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTATAACATCAGGGAGATAAGATTTCCGG
Found at i:47907624 original size:19 final size:19
Alignment explanation
Indices: 47907600--47907645 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
47907590 AATAATTTTA
* *
47907600 AATGCATATG-ATGACATG
1 AATGCAAATGCATGAAATG
47907618 TAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
47907638 AATGCAAA
1 AATGCAAA
47907646 AAAGAGCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:47911397 original size:12 final size:12
Alignment explanation
Indices: 47911361--47911402 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
47911351 TAAGTTAAAT
*
47911361 ATTAAAATAAG-
1 ATTAAAATATGA
47911372 ATTAAAAATGATGA
1 ATT-AAAAT-ATGA
47911386 ATTAAAATATGA
1 ATTAAAATATGA
47911398 ATTAA
1 ATTAA
47911403 TTTATCTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 3 0.11
12 14 0.52
13 7 0.26
14 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (12 bp):
ATTAAAATATGA
Found at i:47914514 original size:19 final size:19
Alignment explanation
Indices: 47914490--47914529 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
47914480 ACTAAGTTAG
* *
47914490 ATAAAACTAATAAAACAAA
1 ATAAAAATAACAAAACAAA
*
47914509 ATAAAAATAACAAAACCAA
1 ATAAAAATAACAAAACAAA
47914528 AT
1 AT
47914530 TTCACCAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.15
Consensus pattern (19 bp):
ATAAAAATAACAAAACAAA
Found at i:47927898 original size:27 final size:26
Alignment explanation
Indices: 47927830--47927899 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
47927820 CCTTTACATA
**
47927830 TATGCTCACACGAGCTGTGGAAAGAG
1 TATGCTCACACGAGCTGTAAAAAGAG
*
47927856 TATGCTCACACGAGCTGTAAAAATGGG
1 TATGCTCACACGAGCTGTAAAAA-GAG
* *
47927883 TCTGCTCACACAAGCTG
1 TATGCTCACACGAGCTG
47927900 AAGGTCGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (26 bp):
TATGCTCACACGAGCTGTAAAAAGAG
Found at i:47936755 original size:13 final size:14
Alignment explanation
Indices: 47936723--47936761 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
47936713 TTTTTTTATG
47936723 TTTCTTCTTCCTACCA
1 TTTCTT-TT-CTACCA
47936739 TTTCTTTTCTACC-
1 TTTCTTTTCTACCA
47936752 TTTCTTTTCT
1 TTTCTTTTCT
47936762 TCTCTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.43
14 5 0.22
15 2 0.09
16 6 0.26
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTCTTTTCTACCA
Found at i:47936935 original size:19 final size:18
Alignment explanation
Indices: 47936871--47936935 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 18
47936861 AATAGCGTAA
47936871 GTTTTGTTATGAATTTTT
1 GTTTTGTTATGAATTTTT
* *
47936889 GTTAATGTTCAT--TTTTTT
1 GTT-TTGTT-ATGAATTTTT
47936907 AAGTTTTGTTATGAATTTTT
1 --GTTTTGTTATGAATTTTT
47936927 GTTTATGTT
1 GTTT-TGTT
47936936 TGTTTCTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 13
0.68 0.08 0.25
Matches are distributed among these distances:
18 14 0.39
19 12 0.33
20 10 0.28
ACGTcount: A:0.18, C:0.02, G:0.15, T:0.65
Consensus pattern (18 bp):
GTTTTGTTATGAATTTTT
Found at i:47939412 original size:5 final size:5
Alignment explanation
Indices: 47939402--47939481 Score: 160
Period size: 5 Copynumber: 16.0 Consensus size: 5
47939392 TTTATTAACA
47939402 ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT
1 ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT
47939452 ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT
1 ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT
47939482 TATACGGTAA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 75 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
ATGTT
Found at i:47939509 original size:13 final size:13
Alignment explanation
Indices: 47939493--47939519 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47939483 ATACGGTAAG
47939493 TTTTATCCAACTA
1 TTTTATCCAACTA
47939506 TTTTATCCAACTA
1 TTTTATCCAACTA
47939519 T
1 T
47939520 CTTTCAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTATCCAACTA
Found at i:47945137 original size:6 final size:6
Alignment explanation
Indices: 47945126--47945150 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
47945116 ATGCTCTTTG
47945126 TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT T
47945151 GGAATTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:47951057 original size:3 final size:3
Alignment explanation
Indices: 47951049--47951087 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
47951039 CAAGAAAACT
47951049 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
47951088 CAAATAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:47962471 original size:86 final size:83
Alignment explanation
Indices: 47962328--47962489 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 83
47962318 ATTTAGATTC
* *
47962328 GGTGAATTCATCAAGTCCGTCAATAGACCACCCAAAATTTGGGATATGAACTCATTAAGAGTAAT
1 GGTGAATTCATCAAGTCCGTCAATAGACCACCCAAAATCTAGGATATGAACTCATTAAGAGTAAT
47962393 AAAATCAACCTTTCAAGTT
66 -AAATCAACCTTTCAAGTT
* * * *
47962412 GGTGACTTCATCAAGTCCGTCTCAATAGGACCA-CCAAACTCTAGGCTATGAATTCATTAAGAGT
1 GGTGAATTCATCAAGTCCG--TCAATA-GACCACCCAAAATCTAGGATATGAACTCATTAAGAGT
*
47962476 AATAACTCAACCTT
63 AATAAATCAACCTT
47962490 ATGCATGCAT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 18 0.26
85 10 0.15
86 35 0.51
87 5 0.07
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (83 bp):
GGTGAATTCATCAAGTCCGTCAATAGACCACCCAAAATCTAGGATATGAACTCATTAAGAGTAAT
AAATCAACCTTTCAAGTT
Found at i:47963712 original size:15 final size:15
Alignment explanation
Indices: 47963687--47963721 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
47963677 GACTCTATTT
*
47963687 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
47963701 TAATTAATATTAAGA
1 TAATTAATATTAAGA
47963716 TAATTA
1 TAATTA
47963722 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:47967675 original size:4 final size:4
Alignment explanation
Indices: 47967666--47967737 Score: 51
Period size: 4 Copynumber: 17.0 Consensus size: 4
47967656 CCAATTTTTA
*
47967666 TATT TATT TATT TA-T TATTT TATTT TATTT TCTT TACTT TATT TA-T
1 TATT TATT TATT TATT TA-TT TA-TT TA-TT TATT TA-TT TATT TATT
47967712 TACTT TATTT TATT T-TAT TATT TATT
1 TA-TT TA-TT TATT TAT-T TATT TATT
47967738 AATTATTTGG
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
3 7 0.12
4 27 0.47
5 24 0.41
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:47967690 original size:5 final size:5
Alignment explanation
Indices: 47967661--47967730 Score: 54
Period size: 5 Copynumber: 13.4 Consensus size: 5
47967651 GCAACCCAAT
* *
47967661 TTTTA TATTTA -TTTA TTTATTA TTTTA TTTTA TTTT- CTTTA CTTTA
1 TTTTA T-TTTA TTTTA -TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
47967707 TTTATTA CTTTA TTTTA TTTTA TT
1 -TT-TTA TTTTA TTTTA TTTTA TT
47967731 ATTTATTAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
4 7 0.13
5 32 0.59
6 9 0.17
7 6 0.11
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:47967710 original size:31 final size:29
Alignment explanation
Indices: 47967668--47967745 Score: 111
Period size: 31 Copynumber: 2.6 Consensus size: 29
47967658 AATTTTTATA
47967668 TTTATTTATTTATTATTTTATTTTATTTT
1 TTTATTTATTTATTATTTTATTTTATTTT
*
47967697 CTTTACTTTATTTATTACTTTATTTTATTTT
1 -TTTA-TTTATTTATTATTTTATTTTATTTT
* *
47967728 ATTATTTATTAATTATTT
1 TTTATTTATTTATTATTT
47967746 GGATATTAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 12 0.28
30 7 0.16
31 24 0.56
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (29 bp):
TTTATTTATTTATTATTTTATTTTATTTT
Found at i:47969067 original size:101 final size:100
Alignment explanation
Indices: 47968877--47969065 Score: 247
Period size: 101 Copynumber: 1.8 Consensus size: 100
47968867 AAGAACATGT
* * *
47968877 TGGGCTGAGTAATCAGGGTGAGGTGCTTGGCTGTCATCTCTTTTCGCGTCAAAAGGTTCGATGTG
1 TGGGCTGAGTAATCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAAGTTCGATATG
*
47968942 TTCTTAAGAAAAAATTATAATAAATTAGGAGTCTGC
66 TTCTAAAGAAAAAA-TATAATAAATTAGGAGTCTGC
* *
47968978 TGGGCTGAGTAA-CTGGGGTGAGGTTCTTGGCTGTCATCTCTCTTCGCGTCAAAAAGTTCAGTAT
1 TGGGCTGAGTAATC-AGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAAGTTC-G-AT
47969042 AT-TTCTAAAGCATAAAAAATATAA
63 ATGTTCTAAAG---AAAAAATATAA
47969066 ATAATAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
100 1 0.01
101 53 0.70
102 8 0.11
103 3 0.04
104 5 0.07
105 6 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (100 bp):
TGGGCTGAGTAATCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAAGTTCGATATG
TTCTAAAGAAAAAATATAATAAATTAGGAGTCTGC
Found at i:47969691 original size:15 final size:15
Alignment explanation
Indices: 47969666--47969700 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
47969656 GACTATATTT
*
47969666 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
47969680 TAATTAATATTAAGA
1 TAATTAATATTAAGA
47969695 TAATTA
1 TAATTA
47969701 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:47969716 original size:18 final size:17
Alignment explanation
Indices: 47969704--47969736 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47969694 ATAATTATTA
47969704 AGGA-TTATTTAATTTT
1 AGGATTTATTTAATTTT
47969720 AGGATTTTATTTAATTT
1 AGGA-TTTATTTAATTT
47969737 ATCTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (17 bp):
AGGATTTATTTAATTTT
Found at i:47980569 original size:6 final size:6
Alignment explanation
Indices: 47980558--47980584 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
47980548 GTTATTCATT
47980558 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
47980585 TATAAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:47986443 original size:20 final size:21
Alignment explanation
Indices: 47986408--47986455 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
47986398 ATTTTTTATT
47986408 ATTTTAAAAATATAATATAAA
1 ATTTTAAAAATATAATATAAA
* **
47986429 ATTTT-AAATTATAATATATT
1 ATTTTAAAAATATAATATAAA
47986449 ATTTTAA
1 ATTTTAA
47986456 TCATATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTTAAAAATATAATATAAA
Found at i:47987205 original size:19 final size:18
Alignment explanation
Indices: 47987176--47987222 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
47987166 AATCCATTAA
*
47987176 ATTTAAAATATATGAATT
1 ATTTAATATATATGAATT
*
47987194 ACTTTAATATATATTAATT
1 A-TTTAATATATATGAATT
*
47987213 ATTAAATATA
1 ATTTAATATA
47987223 ACAAATCTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
ATTTAATATATATGAATT
Found at i:47987836 original size:31 final size:31
Alignment explanation
Indices: 47987775--47987865 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
47987765 AAAAAAACTT
* * *
47987775 AATAGCTTAGTGACTTTTAATAAAAGCTTTCG
1 AATAGTTTAGTGAC-TTAAATAAAAACTTTCG
*
47987807 AATAGTTTAGTAACTTAAATAAAAACTTTCG
1 AATAGTTTAGTGACTTAAATAAAAACTTTCG
* * * *
47987838 AACAATTTAGTGA-TTAAATTATAACTTT
1 AATAGTTTAGTGACTTAAATAAAAACTTT
47987866 TTAGTTAAGT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
30 13 0.26
31 25 0.50
32 12 0.24
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (31 bp):
AATAGTTTAGTGACTTAAATAAAAACTTTCG
Found at i:47990903 original size:13 final size:13
Alignment explanation
Indices: 47990887--47990923 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
47990877 CTTGAAGAGC
47990887 ACTTTTCTAAAAT
1 ACTTTTCTAAAAT
47990900 ACTTTT-TAAAAAT
1 ACTTTTCT-AAAAT
47990913 ACTTTTC-AAAA
1 ACTTTTCTAAAA
47990924 GCATTACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
ACTTTTCTAAAAT
Found at i:48001554 original size:13 final size:14
Alignment explanation
Indices: 48001536--48001576 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
48001526 ATTTCAGATA
48001536 CAGATA-ACAAAAT
1 CAGATATACAAAAT
* *
48001549 CAGATATGC-AGAT
1 CAGATATACAAAAT
48001562 CAGATATACAAAAT
1 CAGATATACAAAAT
48001576 C
1 C
48001577 CTACCCCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (14 bp):
CAGATATACAAAAT
Found at i:48006883 original size:22 final size:22
Alignment explanation
Indices: 48006842--48006889 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
48006832 CTAAAATCTT
*
48006842 GAGACAATTTGCCATATGTCTC
1 GAGACAATTTGCCATATGTCTA
48006864 GAGACAATTT-CTCGAT-TGTCTA
1 GAGACAATTTGC-C-ATATGTCTA
48006886 GAGA
1 GAGA
48006890 TAGGGCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.04
22 20 0.87
23 2 0.09
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (22 bp):
GAGACAATTTGCCATATGTCTA
Found at i:48008904 original size:67 final size:67
Alignment explanation
Indices: 48008748--48008904 Score: 176
Period size: 67 Copynumber: 2.3 Consensus size: 67
48008738 AGGTTTAAGG
** *
48008748 TGTAAGACCATAAATCGACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
1 TGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCTACTAGGACATTAAACATAGGGTTAAA
*
48008813 TG
66 TA
* * * *
48008815 TGTAAGATCATAGCTTGACTATGACAA-C-ATGTGTAGTCTA-TCAGGACATTAAACATGGGGTT
1 TGTAAGACCATAGCTCGACTATGACAACCAAT-AG-AGTCTACT-AGGACATTAAACATAGGGTT
*
48008877 ACATA
63 AAATA
*
48008882 TGTAAGACCATAGCTCGTCTATG
1 TGTAAGACCATAGCTCGACTATG
48008905 GCAATAAATA
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
65 2 0.03
66 3 0.04
67 70 0.93
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (67 bp):
TGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCTACTAGGACATTAAACATAGGGTTAAA
TA
Found at i:48010959 original size:17 final size:19
Alignment explanation
Indices: 48010929--48010965 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
48010919 AAACATTTAT
48010929 TTTTTAATGATATT-TGCA
1 TTTTTAATGATATTATGCA
*
48010947 TTTTTATTG-TATTATGCA
1 TTTTTAATGATATTATGCA
48010965 T
1 T
48010966 ACTCTATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.59
Consensus pattern (19 bp):
TTTTTAATGATATTATGCA
Found at i:48011162 original size:123 final size:123
Alignment explanation
Indices: 48010939--48011186 Score: 442
Period size: 123 Copynumber: 2.0 Consensus size: 123
48010929 TTTTTAATGA
*
48010939 TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTTCATCAATTGTATATCTATATACTTA
1 TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTCCATCAATTGTATATCTATATACTTA
* *
48011004 CTATTATTTAAGTTATTGACTAAGGTGGTGTCACGAATTGACCAGGCACCAACTTGGT
66 CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTGGT
* *
48011062 TATTTGCATTTTTATTGTATTATGCATACTCTATTATCTCCATCAATTGTATATCTATATAGTTA
1 TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTCCATCAATTGTATATCTATATACTTA
*
48011127 CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTTGT
66 CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTGGT
48011185 TA
1 TA
48011187 GGGAAATTAT
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 119 1.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (123 bp):
TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTCCATCAATTGTATATCTATATACTTA
CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTGGT
Found at i:48015801 original size:131 final size:131
Alignment explanation
Indices: 48015496--48016020 Score: 822
Period size: 131 Copynumber: 4.0 Consensus size: 131
48015486 CTCCTGGGGA
*
48015496 AGATAAGATCCGCAATCTT-CAACCTA-TCCCACTGCTGACCAGGGACATAA-GACTTGTGGCTT
1 AGATAAGATCTGCAAT-TTCCAACCTACT-CCACTGCTGACCAGGGACA-AAGGACTTGTGGCTT
** *
48015558 AAATCTGTTTCCCTACTCCTAAGGAAGATAAGATTCGCCGTCTTTTGATCTGCTCCACTATTGCT
63 AAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC-TTCGATCTGCTCCACTATTGCT
48015623 TAGGG
127 TAGGG
* *
48015628 AGATAAGATCTGAAATTTCCAACCTACTCCACTCCTGACCAGGGACAAAGGACTTGTGGCTTAAA
1 AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
* * *
48015693 TCTGTTTTCGTACTCCTGGGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
48015758 G
131 G
* * * *
48015759 AGATAAGATCTGCTATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAA
1 AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
* *
48015824 TCTGTTTCCCTACTCTTGTGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
48015889 G
131 G
* * * *
48015890 AAATAAGATCTGCAATTTCTAACCTACTCCACTGCTGACCAGGGACATAGGACTTGTAGCTTAAA
1 AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
48015955 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
48016020 G
131 G
48016021 TTTAGGGTTT
Statistics
Matches: 362, Mismatches: 28, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
131 273 0.75
132 88 0.24
133 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
G
Found at i:48028944 original size:122 final size:123
Alignment explanation
Indices: 48028727--48029074 Score: 563
Period size: 124 Copynumber: 2.8 Consensus size: 123
48028717 CACAAACATG
* * *
48028727 CTACTGTAGCAAAAGCGTGCCCATGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
48028792 TAGAAGCGATTTTATACTATTTGGTCAGAAAGGTCAAAAAAA-TATTTCTTACATGAC
66 TAAAAGCGATTTTATACTATTTGCTCAGAAAGATCAAAAAAATTATTTCTTACATGAC
* *
48028849 CTACTGTAGCAAAAGCGCGTCCACGAGGCTGCGATTTCACAAATTCTTCTCAAATAACATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
48028914 TAAAAGCGATTTTATACTATTTGCTCAGAAATTTCAAAAAAATTTATTTCTTACATGAC
66 TAAAAGCGATTTTATACTATTTGCTCAGAAAGATCAAAAAAA-TTATTTCTTACATGAC
* *
48028973 CTACTGTAGCAAAAGTGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTTAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
48029038 TAAAAGTGATTTTATACTATTTGCTCAGAAAGATCAA
66 TAAAAGCGATTTTATACTATTTGCTCAGAAAGATCAA
48029075 CTCGAAATTA
Statistics
Matches: 208, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
122 98 0.47
124 110 0.53
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (123 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAAAAGCGATTTTATACTATTTGCTCAGAAAGATCAAAAAAATTATTTCTTACATGAC
Found at i:48031523 original size:45 final size:44
Alignment explanation
Indices: 48031438--48031525 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
48031428 GATCCAAAGT
* **
48031438 TTTATGTAAGTTATGATATGATATTTTTTTATATTCTTTAAATG
1 TTTATGTAAGTTATGATATGATATATTTAAATATTCTTTAAATG
48031482 TTTATGTAAGTTATGAT-T-ATCATATTTAAATATTAACTTTAAAT
1 TTTATGTAAGTTATGATATGAT-ATATTTAAATATT--CTTTAAAT
48031526 ATTGACTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
42 2 0.05
43 11 0.29
44 17 0.45
45 8 0.21
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.53
Consensus pattern (44 bp):
TTTATGTAAGTTATGATATGATATATTTAAATATTCTTTAAATG
Found at i:48033741 original size:533 final size:533
Alignment explanation
Indices: 48032730--48033792 Score: 1910
Period size: 533 Copynumber: 2.0 Consensus size: 533
48032720 ACTCCATTCT
* *
48032730 CAAAATATCTACTAGATAAAATGTGTTGTATTTAGCATATCGCAATATTTTCGAGCATCAAATAT
1 CAAAATATCTACTAGATAAAAGGTGTTGTATTTAGCATATCGCAATATTTTCAAGCATCAAATAT
*
48032795 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTGCTATTACCTTTACAAAC
66 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
* *
48032860 TTTGGCATGCTTAATTCGGTCTGACCAAAAAAGAGAAGGAAATAGAAAATTTGAAGTTCAATAAC
131 TTTGGCATGCTCAATTCGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAATAAC
48032925 TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
196 TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
*
48032990 GGTCAACAAGGGAAAATGATTGTGTACACTGATATGGACTAAACACAATTGTAAAGCACATATTT
261 AGTCAACAAGGGAAAATGATTGTGTACACTGATATGGACTAAACACAATTGTAAAGCACATATTT
*
48033055 ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACTAGCATAAGAACACAATGTACTTA
326 ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
*
48033120 ACTGAAACATCAATGAAAACCCAGAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
391 ACTGAAACATCAATGAAAACCCAAAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
*
48033185 CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGGAAGC
456 CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGAAAGC
*
48033250 TGAACTGTCTGAC
521 AGAACTGTCTGAC
* *
48033263 CAAAGTATCTACTAGATAAAAGGTGTTGTATTTAGCATATTGCAATATTTTCAAGCATCAAATAT
1 CAAAATATCTACTAGATAAAAGGTGTTGTATTTAGCATATCGCAATATTTTCAAGCATCAAATAT
48033328 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
66 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
* *
48033393 TTTGGCATGCTCAATTTGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAGTAAC
131 TTTGGCATGCTCAATTCGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAATAAC
** * *
48033458 TGCCCTGTAAAATCGTGCTCTATATCAAGAACTTGCTGATGTAAAAACTCAACTATACTAGCCTT
196 TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
*
48033523 AGTCAACAAGGGAAAATGATTGTGTACACTGATATGGACTAAACACCATTGTAAAGCACATATTT
261 AGTCAACAAGGGAAAATGATTGTGTACACTGATATGGACTAAACACAATTGTAAAGCACATATTT
*
48033588 ACACATATGTTCCTATTACCCGAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
326 ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
* *
48033653 ACTGAAACATCAATGAAAACCCAAAATTTAGAAGAAAAAAGAAAATAAATTAGGGCAGATAACAA
391 ACTGAAACATCAATGAAAACCCAAAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
* *
48033718 GATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAATGAAAGC
456 CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGAAAGC
48033783 AGAACTGTCT
521 AGAACTGTCT
48033793 TACCTGAGAC
Statistics
Matches: 506, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
533 506 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (533 bp):
CAAAATATCTACTAGATAAAAGGTGTTGTATTTAGCATATCGCAATATTTTCAAGCATCAAATAT
CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
TTTGGCATGCTCAATTCGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAATAAC
TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
AGTCAACAAGGGAAAATGATTGTGTACACTGATATGGACTAAACACAATTGTAAAGCACATATTT
ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
ACTGAAACATCAATGAAAACCCAAAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGAAAGC
AGAACTGTCTGAC
Found at i:48035724 original size:71 final size:71
Alignment explanation
Indices: 48035592--48035746 Score: 199
Period size: 71 Copynumber: 2.2 Consensus size: 71
48035582 AATTTGGGGA
* *
48035592 AAAAAGAAAGGGAATTGGGACAAAAGTTAAGGATTTCGGGGAGGGGGGAACTGATTTGGGAAAAA
1 AAAAAGAAAGGGAATTGGGACAAAAATTAAGGATTTCGGGGAGAGGGGAACTGATTTGGG-AAAA
48035657 ATT-GAG
65 ATTAGAG
* * *
48035663 AAAAAGAAAGGGAATTGGGA-AAAAATTAGGGATTTCGGGGA-AGGGGACCTTATTTGGGGGAAA
1 AAAAAGAAAGGGAATTGGGACAAAAATTAAGGATTTCGGGGAGAGGGGAACTGATTT--GGGAAA
*
48035726 AATTAGGG
64 AATTAGAG
48035734 AAAAAGGAAAGGG
1 AAAAA-GAAAGGG
48035747 TTCTAGGAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
69 11 0.15
70 26 0.35
71 30 0.41
72 7 0.09
ACGTcount: A:0.42, C:0.04, G:0.37, T:0.17
Consensus pattern (71 bp):
AAAAAGAAAGGGAATTGGGACAAAAATTAAGGATTTCGGGGAGAGGGGAACTGATTTGGGAAAAA
TTAGAG
Found at i:48035759 original size:71 final size:70
Alignment explanation
Indices: 48035592--48035746 Score: 186
Period size: 70 Copynumber: 2.2 Consensus size: 70
48035582 AATTTGGGGA
* * *
48035592 AAAAAGAAAGGGAATTGGGACAAAAGTTAAGGATTTCGGGGAGGGGGGAACTGATTTGGGAAAAA
1 AAAAAGAAAGGGAATTAGGA-AAAAATTAAGGATTTCGGGGAGAGGGGAACTGATTTGGGAAAAA
48035657 ATTGAG
65 ATTGAG
* * * * *
48035663 AAAAAGAAAGGGAATTGGGAAAAAATTAGGGATTTCGGGGA-AGGGGACCTTATTTGGGGGAAAA
1 AAAAAGAAAGGGAATTAGGAAAAAATTAAGGATTTCGGGGAGAGGGGAACTGATTT-GGGAAAAA
*
48035727 ATTAGGG
65 ATT-GAG
48035734 AAAAAGGAAAGGG
1 AAAAA-GAAAGGG
48035747 TTCTAGGAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
69 11 0.15
70 29 0.39
71 27 0.36
72 7 0.09
ACGTcount: A:0.42, C:0.04, G:0.37, T:0.17
Consensus pattern (70 bp):
AAAAAGAAAGGGAATTAGGAAAAAATTAAGGATTTCGGGGAGAGGGGAACTGATTTGGGAAAAAA
TTGAG
Found at i:48039467 original size:111 final size:111
Alignment explanation
Indices: 48039328--48039539 Score: 379
Period size: 111 Copynumber: 1.9 Consensus size: 111
48039318 TCCTATGTCT
48039328 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCAACGATAACATCTACGGTGTCTCT
1 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCAACGATAACATCTACGGTGTCTCT
48039393 ATCCTCACGGCGTCTAGCCGCATAAACCAGTGTAGGCATATGATCA
66 ATCCTCACGGCGTCTAGCCGCATAAACCAGTGTAGGCATATGATCA
* **
48039439 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAATGTACTGACGATAACATCTACGGTGTCTCT
1 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCAACGATAACATCTACGGTGTCTCT
* *
48039504 ATCCTCACGGCGTCTAGTCGTATAAACCAGTGTAGG
66 ATCCTCACGGCGTCTAGCCGCATAAACCAGTGTAGG
48039540 GAGCCTTGTC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 96 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (111 bp):
ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCAACGATAACATCTACGGTGTCTCT
ATCCTCACGGCGTCTAGCCGCATAAACCAGTGTAGGCATATGATCA
Found at i:48045336 original size:11 final size:11
Alignment explanation
Indices: 48045320--48045347 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
48045310 GTCGCCTCTT
48045320 CCTTCGTTCTA
1 CCTTCGTTCTA
48045331 CCTTCGTTCTA
1 CCTTCGTTCTA
48045342 CCTTCG
1 CCTTCG
48045348 CCTCCCGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.39, G:0.11, T:0.43
Consensus pattern (11 bp):
CCTTCGTTCTA
Found at i:48047198 original size:22 final size:22
Alignment explanation
Indices: 48047156--48047245 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 22
48047146 GAAGATGAAA
***
48047156 CTGGAAATTGTTGCAATTTGTT
1 CTGGAAATTGTTTTGATTTGTT
* *
48047178 -TTGATATTGTTATTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
48047200 CTGGAAATTGTTTTGA-TTGTCT
1 CTGGAAATTGTTTTGATTTGT-T
48047222 GCTGGAAATTGTTCTTGATTTGTT
1 -CTGGAAATTGTT-TTGATTTGTT
48047246 AGTCAGTACA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
21 13 0.24
22 12 0.22
23 21 0.38
24 5 0.09
25 4 0.07
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:48051216 original size:91 final size:91
Alignment explanation
Indices: 48051091--48051298 Score: 283
Period size: 91 Copynumber: 2.3 Consensus size: 91
48051081 TTGATTTTAG
* * *
48051091 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTACATATCACTATTAAATTAT
* *
48051156 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* * *
48051183 TAAATTCGTATAAGAAAATTTATTATCAAGAATTTTATGAAATTACATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTACATATCACTATTAAATTATA
48051248 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
48051274 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
48051299 GTTATAATTA
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
91 84 0.82
92 18 0.18
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTACATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:48051412 original size:24 final size:25
Alignment explanation
Indices: 48051385--48051440 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
48051375 TTTTATAGTA
*
48051385 TCATATATTATG-ATTTGAGTAAAT
1 TCATATATTAAGAATTTGAGTAAAT
* *
48051409 TCAT-TATTAAGAATTTTATTAAAT
1 TCATATATTAAGAATTTGAGTAAAT
48051433 T-ATATATT
1 TCATATATT
48051441 TTAATTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (25 bp):
TCATATATTAAGAATTTGAGTAAAT
Found at i:48051442 original size:106 final size:106
Alignment explanation
Indices: 48051314--48051518 Score: 333
Period size: 106 Copynumber: 1.9 Consensus size: 106
48051304 AATTATTTTA
* *
48051314 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
48051377 TTATAGTATCATATATTATGATTTGAGTAAATTCATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATTATTAAG
* *
48051420 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
48051485 ACAGTATCATATATTATGATTTGAGTAAATTCAT
66 ACAGTATCATATATTATGATTTGAGTAAATTCAT
48051519 ATAATAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
105 5 0.05
106 85 0.92
107 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (106 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATTATTAAG
Found at i:48051460 original size:15 final size:15
Alignment explanation
Indices: 48051425--48051586 Score: 58
Period size: 15 Copynumber: 10.9 Consensus size: 15
48051415 TTAAGAATTT
*
48051425 TATTAAATTAT-ATA
1 TATTTAATTATAATA
48051439 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
48051453 TATTTAATAATAAT-
1 TATTTAATTATAATA
48051467 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
48051481 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
* *
48051496 TATTATGATT-TGAGTA
1 TATT-TAATTAT-AATA
* *
48051512 -AATTCA-TATAATA
1 TATTTAATTATAATA
*
48051525 -ATATTAATTATTAAGA
1 TAT-TTAATTA-TAATA
* *
48051541 -ATTTTATTAAATTATA
1 TATTTAATT--ATAATA
48051557 TATTTTAATTATAATA
1 TA-TTTAATTATAATA
*
48051573 TATTTAATAATAAT
1 TATTTAATTATAAT
48051587 TATGTTTAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 35
0.67 0.12 0.21
Matches are distributed among these distances:
12 3 0.03
13 18 0.16
14 17 0.15
15 41 0.37
16 22 0.20
17 3 0.03
18 6 0.05
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:48051575 original size:16 final size:16
Alignment explanation
Indices: 48051554--48051595 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
48051544 TTATTAAATT
*
48051554 ATATATTTTAATTATA
1 ATATATTTTAATAATA
48051570 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
48051585 AT-TATGTTTAA
1 ATATAT-TTTAA
48051596 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:48051726 original size:18 final size:17
Alignment explanation
Indices: 48051698--48051732 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48051688 ATTATTAAGA
*
48051698 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48051715 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48051733 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48051815 original size:157 final size:157
Alignment explanation
Indices: 48051529--48051845 Score: 607
Period size: 157 Copynumber: 2.0 Consensus size: 157
48051519 ATAATAATAT
*
48051529 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
48051594 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
48051659 TAATAATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
48051686 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48051751 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
48051816 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
48051843 TAA
1 TAA
48051846 GGGTATTCTA
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
157 157 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:48051923 original size:39 final size:40
Alignment explanation
Indices: 48051880--48051984 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
48051870 TTCCATTATG
48051880 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
48051919 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
48051964 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
48051985 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:48051978 original size:45 final size:44
Alignment explanation
Indices: 48051878--48051987 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
48051868 TTTTCCATTA
48051878 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
48051917 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
48051962 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
48051988 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:48051987 original size:16 final size:16
Alignment explanation
Indices: 48051966--48052019 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
48051956 TTGATTTGCT
*
48051966 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
48051982 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
48051998 AATACACCTTTAATCC
1 ATTACACCTCTAATCC
*
48052014 AATACA
1 ATTACA
48052020 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:48053271 original size:22 final size:22
Alignment explanation
Indices: 48053243--48053368 Score: 74
Period size: 22 Copynumber: 5.4 Consensus size: 22
48053233 TATGGATTTG
48053243 AGAGAA-TTTAGGAAGGAAATTA
1 AGAGAATTTTA-GAAGGAAATTA
*
48053265 AGAGAATTTTAGAAGGAAATTG
1 AGAGAATTTTAGAAGGAAATTA
* * * *
48053287 AGAGGAAATTGAAATTAAAATTGGATTTA
1 AGA-G-AATT----TTAGAA-GGAAATTA
* *
48053316 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTAGAAGGAAATTA
* * *
48053338 AGAGAATTTTGGAAAGAAATTG
1 AGAGAATTTTAGAAGGAAATTA
48053360 AGAGGAATT
1 AGA-GAATT
48053369 GAGAGGAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
22 47 0.57
23 14 0.17
24 4 0.05
27 4 0.05
28 6 0.07
29 7 0.09
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (22 bp):
AGAGAATTTTAGAAGGAAATTA
Found at i:48053291 original size:73 final size:73
Alignment explanation
Indices: 48053205--48053368 Score: 233
Period size: 73 Copynumber: 2.3 Consensus size: 73
48053195 ATTTTAAAAA
* *
48053205 AAGG-AATTTAGAGGAATTTGAAATC-AAATATGGATTTGAGAGAATTTAGGAAGGAAATTAAGA
1 AAGGAAATTGAGAGGAATTTGAAATCAAAAT-TGGATTTAAGAGAATTTAGGAAGGAAATTAAGA
48053268 GAATTTTAG
65 GAATTTTAG
* * * *
48053277 AAGGAAATTGAGAGGAAATTGAAATTAAAATTGGATTTAAGAGAATTTTGGAAGGAAATTGAGAG
1 AAGGAAATTGAGAGGAATTTGAAATCAAAATTGGATTTAAGAGAATTTAGGAAGGAAATTAAGAG
*
48053342 AATTTTGG
66 AATTTTAG
*
48053350 AAAGAAATTGAGAGGAATT
1 AAGGAAATTGAGAGGAATT
48053369 GAGAGGAAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
72 4 0.05
73 73 0.90
74 4 0.05
ACGTcount: A:0.45, C:0.01, G:0.26, T:0.28
Consensus pattern (73 bp):
AAGGAAATTGAGAGGAATTTGAAATCAAAATTGGATTTAAGAGAATTTAGGAAGGAAATTAAGAG
AATTTTAG
Found at i:48053367 original size:23 final size:22
Alignment explanation
Indices: 48053316--48053368 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
48053306 ATTGGATTTA
*
48053316 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAAGAAATTG
48053338 AGAGAATTTTGGAAAGAAATTG
1 AGAGAATTTTGGAAAGAAATTG
48053360 AGAGGAATT
1 AGA-GAATT
48053369 GAGAGGAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 24 0.83
23 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.26
Consensus pattern (22 bp):
AGAGAATTTTGGAAAGAAATTG
Found at i:48054658 original size:28 final size:28
Alignment explanation
Indices: 48054625--48054682 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
48054615 AAAAGGAAAT
*
48054625 AAATTGAAATGATAACACAAGGAACAAG
1 AAATTGAAATGACAACACAAGGAACAAG
48054653 AAATTGAAATGACAACACAAGGAACAAG
1 AAATTGAAATGACAACACAAGGAACAAG
48054681 AA
1 AA
48054683 GCCAAGAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.12
Consensus pattern (28 bp):
AAATTGAAATGACAACACAAGGAACAAG
Found at i:48055199 original size:5 final size:6
Alignment explanation
Indices: 48055184--48055233 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
48055174 TAATTTAGCC
* * *
48055184 TTTTTA TTTTTA TTTTTA TTTTAATA TTTTTG TTTTTA ATTTAA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTT--TA TTTTTA TTTTTA TTTTTA TTTTTA
48055234 CATTCTAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 30 0.83
8 6 0.17
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:48055213 original size:20 final size:20
Alignment explanation
Indices: 48055188--48055232 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
48055178 TTAGCCTTTT
*
48055188 TATTTTTATTTTTATTTTAA
1 TATTTTTATTTTTAATTTAA
*
48055208 TATTTTTGTTTTTAATTTAA
1 TATTTTTATTTTTAATTTAA
48055228 T-TTTT
1 TATTTT
48055233 ACATTCTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (20 bp):
TATTTTTATTTTTAATTTAA
Found at i:48062178 original size:15 final size:15
Alignment explanation
Indices: 48062158--48062186 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
48062148 TTTTTGTTGC
48062158 TTGATAACACGGTGA
1 TTGATAACACGGTGA
48062173 TTGATAACACGGTG
1 TTGATAACACGGTG
48062187 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:48076236 original size:22 final size:23
Alignment explanation
Indices: 48076190--48076236 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
48076180 CAGTGTAAAA
*
48076190 AATGATTTATTATTGTTGGAAAT
1 AATGATTTATAATTGTTGGAAAT
*
48076213 AATGATTTGTAATTGTT-GAAAT
1 AATGATTTATAATTGTTGGAAAT
48076235 AA
1 AA
48076237 ATTTGCATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (23 bp):
AATGATTTATAATTGTTGGAAAT
Found at i:48081082 original size:45 final size:45
Alignment explanation
Indices: 48081022--48081110 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
48081012 AGAGAGAATA
48081022 TTTTTATTCATCTTCTCAT-TTAGACTTCGTTATCATCGAAGATAT
1 TTTTTATTCATCTTCTC-TGTTAGACTTCGTTATCATCGAAGATAT
48081067 TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGATA
1 TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGATA
48081111 CCATGAGAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.48
Consensus pattern (45 bp):
TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGATAT
Found at i:48090014 original size:51 final size:51
Alignment explanation
Indices: 48089841--48090030 Score: 167
Period size: 51 Copynumber: 3.7 Consensus size: 51
48089831 TGAAGTGACA
* * *
48089841 GAAATGATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAAT-
1 GAAATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATG
** * ** * *
48089892 G--ATGGGTTGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCGAATAG
1 GAAAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT-G
* *
48089943 GTTCAA---TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATG
1 G--AAATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATG
* *
48089993 GAAATGGTCACATGTGCAGTACTATGTGCAAGCTACTA
1 GAAATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
48090031 TGTGAACCGG
Statistics
Matches: 107, Mismatches: 22, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
48 2 0.02
49 4 0.04
50 35 0.33
51 65 0.61
55 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (51 bp):
GAAATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATG
Found at i:48092202 original size:26 final size:24
Alignment explanation
Indices: 48092154--48092202 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
48092144 ATTAGTTTAT
*
48092154 TAATATTTTAATTTGATTTTTAAA
1 TAATATTTTAATTTGATTATTAAA
*
48092178 TAATATTTTATTATTTTATTATTAA
1 TAATATTTTA--ATTTGATTATTAA
48092203 TTTATTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
26 11 0.52
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TAATATTTTAATTTGATTATTAAA
Found at i:48105208 original size:9 final size:9
Alignment explanation
Indices: 48105194--48105242 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
48105184 AGTATAAAAC
48105194 TTAACCGAA
1 TTAACCGAA
48105203 TTAACCGAA
1 TTAACCGAA
**
48105212 TTAATAGAA
1 TTAACCGAA
48105221 TTAACCGAA
1 TTAACCGAA
48105230 TTAACCGAA
1 TTAACCGAA
48105239 TTAA
1 TTAA
48105243 AGTATTGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (9 bp):
TTAACCGAA
Found at i:48108054 original size:26 final size:26
Alignment explanation
Indices: 48108024--48108084 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
48108014 ATAAGGTTAA
* *
48108024 TTATTTTAAGTT-CTTTATATATTATT
1 TTATTTTAAGTTACTTTACATATTA-C
* *
48108050 TTATTTAAAGTTATTTTACATATTAC
1 TTATTTTAAGTTACTTTACATATTAC
48108076 TTATTTTAA
1 TTATTTTAA
48108085 AATTAACCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (26 bp):
TTATTTTAAGTTACTTTACATATTAC
Found at i:48108083 original size:27 final size:25
Alignment explanation
Indices: 48108023--48108085 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
48108013 CATAAGGTTA
*
48108023 ATTATTTT-AAGTTCTTTATATATT
1 ATTATTTTAAAGTTCTTTACATATT
* *
48108047 ATTTTATTTAAAGTTATTTTACATATT
1 ATTAT-TTTAAAGTT-CTTTACATATT
48108074 ACTTATTTTAAA
1 A-TTATTTTAAA
48108086 ATTAACCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 5 0.16
27 16 0.52
28 3 0.10
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (25 bp):
ATTATTTTAAAGTTCTTTACATATT
Found at i:48122311 original size:64 final size:65
Alignment explanation
Indices: 48122145--48122313 Score: 180
Period size: 64 Copynumber: 2.6 Consensus size: 65
48122135 TTCTACACCT
* * * *
48122145 TATATGCGTAATTTCAAGCCAAAATGAGCCAATGGTTGCACATACAACATGTTTATATGAATTGA
1 TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACAACATGTTTATATAAATTGA
* ** * ** * * * *
48122210 CATATGAATAAATTCGAG-CCAAATGAGCCAATAGTTGCACCTACGACATGTTTCTATAAATTGA
1 TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACAACATGTTTATATAAATTGA
* *
48122274 TATATGCGTAATTTTAGGACAAAATGAGCCAA-CGTTGCAC
1 TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCAC
48122314 TTATGACGTC
Statistics
Matches: 83, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
64 58 0.70
65 25 0.30
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (65 bp):
TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACAACATGTTTATATAAATTGA
Found at i:48127419 original size:31 final size:32
Alignment explanation
Indices: 48127384--48127457 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 32
48127374 TAAGGGTTAA
*
48127384 TTTCAATTTTTG-AATATTATTTAATATTTAT
1 TTTCAATTTTTGTAATATTAATTAATATTTAT
* * *
48127415 TTTC-ATTTATGTAATTTTAATTAATTTTTAT
1 TTTCAATTTTTGTAATATTAATTAATATTTAT
*
48127446 TTTATAATTTTT
1 TTT-CAATTTTT
48127458 TATAATAGTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 6 0.18
31 23 0.68
33 5 0.15
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (32 bp):
TTTCAATTTTTGTAATATTAATTAATATTTAT
Found at i:48129009 original size:18 final size:18
Alignment explanation
Indices: 48128986--48129021 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
48128976 TGCCAGGTGC
*
48128986 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
48129004 GTATCCTAACCTTTATAT
1 GTATCCTAACCCTTATAT
48129022 ATTTGTACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:48129150 original size:62 final size:59
Alignment explanation
Indices: 48129034--48129154 Score: 143
Period size: 62 Copynumber: 2.0 Consensus size: 59
48129024 TTGTACAAAC
* * ****
48129034 TATTTTTATATTGTTTTATTTAATAAAATAAAATTTTTTTTGAATATTTTAATAGTAAAT
1 TATTTTTATATTGTTTTATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAG-AAAT
* *
48129094 TATTTTTATATTTTTTCCTATTTAATAAAATAGAAGTTCTTTTGAATAAGACAATAGAAAT
1 TATTTTTATATTGTTT--TATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAGAAAT
48129155 AATGCAATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
60 15 0.29
61 4 0.08
62 32 0.63
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (59 bp):
TATTTTTATATTGTTTTATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAGAAAT
Found at i:48131966 original size:127 final size:126
Alignment explanation
Indices: 48131670--48132191 Score: 660
Period size: 125 Copynumber: 4.2 Consensus size: 126
48131660 AAGGCCAAAT
* ** * *
48131670 AGGAACTACTGTAGAAAAAGAGTGTCCACATGGGAGCTTTTTTCAGTAATTTTGCTGACAGTACA
1 AGGAACTACTGTAAAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
48131735 TCCTGCTTGAAGCGTTTTTGACACTA-TTTTTTAGAGCCGTCTTTTCAAAATTATTTTTTC
66 TCCTGCTTGAAGCTTTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTTC
* * *
48131795 AGGAACTACTATAAAAAAAGAGCATCCACGTGGGAGCTTTTTTCAATAATTTTACTGACAGTGCA
1 AGGAACTACTGTAAAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
48131860 TCATGCTTGAAGCTTTTTTGACACTATTTTTTTTAAAACCATCTTCTCAAAATTATTTTTTC
66 TCCTGCTTGAAGCTTTTTTGACACTA-TTTTTTTAGAACCGTCTTCTCAAAATTATTTTTTC
* * * * *
48131922 AGGAACTACTGTAAAAAAAAAAGCGTCCACGTGGGAG-ATTTTTCAGTAATTTTGCTAACAGTCC
1 AGGAACTACTGT-AAAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * ** *
48131986 ATCTTGCTTGAAG-TGCTTTTT-ACATTATTTTTTTAGAATTGTCTTCTTAAAATTA-TTTTTC
65 ATCCTGCTTGAAGCT--TTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTTC
* * *
48132047 AAGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGC-TTTTTCTAGTACTTTTGCTGACAGTGC
1 AGGAACTACTGTAAAAAAAGAGCATCCACGTGGGAGCTTTTTTC-AGTAATTTTGCTGACAGTGC
* * * *
48132111 ATCCTGCTTGAAGCATTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTC
65 ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTTC
**
48132173 AAAAACTACTGTAAAAAAA
1 AGGAACTACTGTAAAAAAA
48132192 AACAAAATTC
Statistics
Matches: 342, Mismatches: 45, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
124 32 0.09
125 156 0.46
126 47 0.14
127 80 0.23
128 27 0.08
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (126 bp):
AGGAACTACTGTAAAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
TCCTGCTTGAAGCTTTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTTC
Done.