Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 165 of 218
Found at i:50086550 original size:30 final size:30
Alignment explanation
Indices: 50086509--50086630 Score: 181
Period size: 30 Copynumber: 4.0 Consensus size: 30
50086499 CATATTTATG
* * *
50086509 GAAAATCAAAGATATGAGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATATTA
50086539 GAAAGTCAAAGATATGGGTATCAAATATTA
1 GAAAGTCAAAGATATGGGTATCAAATATTA
*
50086569 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATATTA
* *
50086599 GAAAGTCAAATATATGGGTATCGAGATATTA
1 GAAAGTCAAAGATATGGGTATC-AAATATTA
50086630 G
1 G
50086631 CATAATAAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 77 0.92
31 7 0.08
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.26
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATATTA
Found at i:50086607 original size:15 final size:15
Alignment explanation
Indices: 50086559--50086611 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
50086549 GATATGGGTA
*
50086559 TCAAATATTAGAAAG
1 TCAAATATTGGAAAG
* **
50086574 TCAAAGATATGGGTA-
1 TCAAATAT-TGGAAAG
50086589 TCAAATATTGGAAAG
1 TCAAATATTGGAAAG
50086604 TCAAATAT
1 TCAAATAT
50086612 ATGGGTATCG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
14 4 0.14
15 22 0.76
16 3 0.10
ACGTcount: A:0.47, C:0.08, G:0.17, T:0.28
Consensus pattern (15 bp):
TCAAATATTGGAAAG
Found at i:50092625 original size:5 final size:5
Alignment explanation
Indices: 50092609--50092732 Score: 239
Period size: 5 Copynumber: 24.8 Consensus size: 5
50092599 GATATATTTT
*
50092609 TATCA TAACA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
50092659 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
50092709 TATCA TATCA TATCA TATCA TATC
1 TATCA TATCA TATCA TATCA TATC
50092733 GTAACATACC
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 117 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TATCA
Found at i:50092999 original size:7 final size:7
Alignment explanation
Indices: 50092981--50093022 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
50092971 ACATAAACAA
50092981 ATCATA-
1 ATCATAT
50092987 ATCATAT
1 ATCATAT
50092994 ATCATAT
1 ATCATAT
*
50093001 TTACATAT
1 AT-CATAT
*
50093009 ATCATAA
1 ATCATAT
50093016 ATCATAT
1 ATCATAT
50093023 GGCATACATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 6 0.20
7 18 0.60
8 6 0.20
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (7 bp):
ATCATAT
Found at i:50094022 original size:16 final size:17
Alignment explanation
Indices: 50093987--50094032 Score: 67
Period size: 16 Copynumber: 2.7 Consensus size: 17
50093977 AAACTCAAAG
*
50093987 AAAGAAGAAAGAATAGCA
1 AAAGATGAAA-AATAGCA
50094005 AAAGATGAAAAA-AGCA
1 AAAGATGAAAAATAGCA
50094021 AAAGATGAAAAA
1 AAAGATGAAAAA
50094033 GAAAAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 16 0.59
17 2 0.07
18 9 0.33
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (17 bp):
AAAGATGAAAAATAGCA
Found at i:50106609 original size:16 final size:16
Alignment explanation
Indices: 50106570--50106611 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
50106560 AAATTCAACC
50106570 CTTATTTTTTTCAGTA
1 CTTATTTTTTTCAGTA
*
50106586 C-TAATTTTTTCTA-TA
1 CTTATTTTTTTC-AGTA
50106601 CTTATTTTTTT
1 CTTATTTTTTT
50106612 AATTTATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.19, C:0.12, G:0.02, T:0.67
Consensus pattern (16 bp):
CTTATTTTTTTCAGTA
Found at i:50124860 original size:18 final size:18
Alignment explanation
Indices: 50124825--50124865 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
50124815 ATATTACAAA
50124825 ATAAATTCAAAATAATTT
1 ATAAATTCAAAATAATTT
*
50124843 TTAAATTTCAAAAT-ATTT
1 ATAAA-TTCAAAATAATTT
50124861 ATAAA
1 ATAAA
50124866 AATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAAATTCAAAATAATTT
Found at i:50124911 original size:10 final size:9
Alignment explanation
Indices: 50124884--50124910 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
50124874 ATATACATAT
50124884 TTTTAAAAA
1 TTTTAAAAA
50124893 TTTTAAAAA
1 TTTTAAAAA
50124902 TTTTAAAAA
1 TTTTAAAAA
50124911 AAAAATCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:50132769 original size:12 final size:12
Alignment explanation
Indices: 50132752--50132799 Score: 78
Period size: 12 Copynumber: 4.0 Consensus size: 12
50132742 ATAGGTTTCA
50132752 GAAAATGGAAAT
1 GAAAATGGAAAT
**
50132764 GAAAATAAAAAT
1 GAAAATGGAAAT
50132776 GAAAATGGAAAT
1 GAAAATGGAAAT
50132788 GAAAATGGAAAT
1 GAAAATGGAAAT
50132800 AATCCATTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (12 bp):
GAAAATGGAAAT
Found at i:50132773 original size:5 final size:6
Alignment explanation
Indices: 50132752--50132799 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
50132742 ATAGGTTTCA
* * * *
50132752 GAAAAT GGAAAT GAAAAT AAAAAT GAAAAT GGAAAT GAAAAT GGAAAT
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
50132800 AATCCATTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (6 bp):
GAAAAT
Found at i:50132979 original size:25 final size:26
Alignment explanation
Indices: 50132945--50133005 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
50132935 ACATATTTTC
*
50132945 TCAAAATTTT-CTAGAGGAAAAATCA
1 TCAAAATTTTACCAGAGGAAAAATCA
* *
50132970 TCAAAATTTTACCAGAGGTAAAATCG
1 TCAAAATTTTACCAGAGGAAAAATCA
*
50132996 TCAAATTTTT
1 TCAAAATTTT
50133006 GCTAAGGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 10 0.32
26 21 0.68
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCAGAGGAAAAATCA
Found at i:50134612 original size:27 final size:27
Alignment explanation
Indices: 50134561--50134613 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
50134551 TCCTAGTTTC
*
50134561 TTTTATAGTAAAATCATCGTCACTTTA
1 TTTTATAGTAAAATCATCATCACTTTA
* *
50134588 TTTTATAGTAAAATCGTCATTACTTT
1 TTTTATAGTAAAATCATCATCACTTT
50134614 GACGGAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (27 bp):
TTTTATAGTAAAATCATCATCACTTTA
Found at i:50134659 original size:16 final size:18
Alignment explanation
Indices: 50134632--50134664 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50134622 TAGAATTAAG
50134632 TTGAGAAAATT-ATTTAC
1 TTGAGAAAATTAATTTAC
50134649 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
50134665 GTTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAC
Found at i:50150177 original size:20 final size:20
Alignment explanation
Indices: 50150135--50150175 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
50150125 TACAACACAA
*
50150135 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
50150155 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
50150174 TT
1 TT
50150176 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:50150670 original size:22 final size:25
Alignment explanation
Indices: 50150645--50150700 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
50150635 CTTTATTTCT
*
50150645 TTTACTTA-T-TTATTTTAT-TATA
1 TTTACTTATTATTATATTATATATA
50150667 TTTACTTTATTATTATATTATATATA
1 TTTAC-TTATTATTATATTATATATA
50150693 TTTACTTA
1 TTTACTTA
50150701 AATATTAAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.17
23 3 0.10
24 1 0.03
25 11 0.38
26 9 0.31
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTACTTATTATTATATTATATATA
Found at i:50150692 original size:26 final size:27
Alignment explanation
Indices: 50150645--50150699 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
50150635 CTTTATTTCT
*
50150645 TTTACTTATTTATTTTATTATATTTAC
1 TTTACTTATTTATTATATTATATTTAC
50150672 TTTA-TTATTATATTATA-TATATTTAC
1 TTTACTTATT-TATTATATTATATTTAC
50150698 TT
1 TT
50150700 AAATATTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTACTTATTTATTATATTATATTTAC
Found at i:50150706 original size:26 final size:25
Alignment explanation
Indices: 50150654--50150707 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
50150644 TTTTACTTAT
* * *
50150654 TTATTTTATTATATTTACTTTATTA
1 TTATATTATTATATTTACTTAAATA
50150679 TTATATTATATATATTTACTTAAATA
1 TTATATTAT-TATATTTACTTAAATA
50150705 TTA
1 TTA
50150708 AGCAAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATATTATTATATTTACTTAAATA
Found at i:50155498 original size:18 final size:19
Alignment explanation
Indices: 50155475--50155510 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
50155465 ACAAAAAAAT
*
50155475 TTTAAGTA-TTAAATAAAG
1 TTTAAGTACCTAAATAAAG
50155493 TTTAAGTACCTAAATAAA
1 TTTAAGTACCTAAATAAA
50155511 TAACCTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.36
Consensus pattern (19 bp):
TTTAAGTACCTAAATAAAG
Found at i:50160023 original size:52 final size:52
Alignment explanation
Indices: 50159945--50160103 Score: 249
Period size: 52 Copynumber: 3.2 Consensus size: 52
50159935 GCTCACTGAT
50159945 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
1 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
*
50159997 AAATGTTTGGAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
1 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
* *
50160049 AAATGTTTGAAATGGTGCTGTT-A----CTACT-TCAACTTTGAATGCTTTG
1 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
50160095 AAATGTTTG
1 AAATGTTTG
50160104 CTCACTGATA
Statistics
Matches: 103, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
46 26 0.25
47 4 0.04
51 1 0.01
52 72 0.70
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.43
Consensus pattern (52 bp):
AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
Found at i:50160138 original size:116 final size:116
Alignment explanation
Indices: 50159997--50160294 Score: 587
Period size: 116 Copynumber: 2.6 Consensus size: 116
50159987 GAATGCTTTG
*
50159997 AAATGTTTGGAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
1 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
50160062 GGTGCTGTTACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGAT
66 GGTGCTGTTACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGAT
50160113 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
1 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
50160178 GGTGCTGTTACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGAT
66 GGTGCTGTTACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGAT
50160229 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
1 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
50160294 G
66 G
50160295 AATTAACACC
Statistics
Matches: 181, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 181 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.42
Consensus pattern (116 bp):
AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAAT
GGTGCTGTTACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGAT
Found at i:50160181 original size:168 final size:162
Alignment explanation
Indices: 50159903--50160219 Score: 553
Period size: 168 Copynumber: 1.9 Consensus size: 162
50159893 AACTGACTTG
50159903 ACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGATAAATGTTTGAAATGGTGCTGTTA
1 ACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGATAAATGTTTGAAATGGTGCTGTTA
* * *
50159968 ATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGGAATGGTGCTGTTAATTTGGTACTGTT
66 ATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAATGGTGCTGTT-A----CTACT-TC
50160033 AACTTTGAATGCTTTGAAATGTTTGAAATGGTGCTGTT
125 AACTTTGAATGCTTTGAAATGTTTGAAATGGTGCTGTT
50160071 ACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGATAAATGTTTGAAATGGTGCTGTTA
1 ACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGATAAATGTTTGAAATGGTGCTGTTA
50160136 ATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAATGGTGCTGTTACTACTTCAACTTT
66 ATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAATGGTGCTGTTACTACTTCAACTTT
50160201 GAATGCTTTGAAATGTTTG
131 GAATGCTTTGAAATGTTTG
50160220 CTCACTGATA
Statistics
Matches: 146, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
162 26 0.18
163 4 0.03
167 1 0.01
168 115 0.79
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.43
Consensus pattern (162 bp):
ACTACTTCAACTTTGAATGCTTTGAAATGTTTGCTCACTGATAAATGTTTGAAATGGTGCTGTTA
ATTTGGTACTGTTAACTTTGAATGCTTTGAAATGTTTGAAATGGTGCTGTTACTACTTCAACTTT
GAATGCTTTGAAATGTTTGAAATGGTGCTGTT
Found at i:50160203 original size:46 final size:49
Alignment explanation
Indices: 50160113--50160219 Score: 148
Period size: 46 Copynumber: 2.2 Consensus size: 49
50160103 GCTCACTGAT
* *
50160113 AAATGTTTGAAATGGTGCTGTTAATTTGGTACTGTTAACTTTGAATGCTTTG
1 AAATGTTTGAAATGGTGCTGTTAA--T-CTACTGTCAACTTTGAATGCTTTG
50160165 AAATGTTTGAAATGGTGCTGTT-A-CTACT-TCAACTTTGAATGCTTTG
1 AAATGTTTGAAATGGTGCTGTTAATCTACTGTCAACTTTGAATGCTTTG
50160211 AAATGTTTG
1 AAATGTTTG
50160220 CTCACTGATA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
46 26 0.49
47 4 0.08
51 1 0.02
52 22 0.42
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.43
Consensus pattern (49 bp):
AAATGTTTGAAATGGTGCTGTTAATCTACTGTCAACTTTGAATGCTTTG
Found at i:50161388 original size:23 final size:23
Alignment explanation
Indices: 50161319--50161391 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
50161309 GTATATTAAA
50161319 ATATAATTAAAATCATTTTGATT
1 ATATAATTAAAATCATTTTGATT
*** * * *
50161342 ATATAA-TATTTTTA-ATTGA-A
1 ATATAATTAAAATCATTTTGATT
50161362 ATATAATTAAAATCATTTTGATT
1 ATATAATTAAAATCATTTTGATT
50161385 ATATAAT
1 ATATAAT
50161392 ATTAATATAA
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 6 0.17
21 8 0.23
22 8 0.23
23 13 0.37
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (23 bp):
ATATAATTAAAATCATTTTGATT
Found at i:50161418 original size:43 final size:41
Alignment explanation
Indices: 50161313--50161418 Score: 142
Period size: 43 Copynumber: 2.5 Consensus size: 41
50161303 TTTAAGGTAT
50161313 ATTAAAATATAATTAAAATCATTTTGATTATATAATATTTTTA
1 ATTAAAATATAATTAAAATCATTTTGATTATATAATA--TTTA
*
50161356 ATTGAAATATAATTAAAATCATTTTGATTATATAATA-TTA
1 ATTAAAATATAATTAAAATCATTTTGATTATATAATATTTA
*
50161396 ATATAAAACTATACATTTAAATC
1 AT-TAAAA-TATA-ATTAAAATC
50161419 CAAAATATAA
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
40 5 0.09
41 4 0.07
42 4 0.07
43 44 0.77
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (41 bp):
ATTAAAATATAATTAAAATCATTTTGATTATATAATATTTA
Found at i:50163327 original size:91 final size:91
Alignment explanation
Indices: 50163201--50163408 Score: 301
Period size: 91 Copynumber: 2.3 Consensus size: 91
50163191 TTAATTTTAG
* *
50163201 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
50163266 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* *
50163293 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
50163358 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
50163384 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
50163409 GTTATAATTA
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
91 86 0.82
92 19 0.18
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:50163548 original size:120 final size:120
Alignment explanation
Indices: 50163413--50163716 Score: 499
Period size: 120 Copynumber: 2.5 Consensus size: 120
50163403 TTATTAGTTA
* *
50163413 TAATTATTTAA-AATTTTATTAAATCATATATTTTAATTATAATATATTTAATATTAATTAT-TT
1 TAATTA-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
*
50163476 CAAATTT-TCTTTTA-TAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATAT
65 --AATTTATATTTTACT-GTATAATATATTATGATTTGAGTAAATTCATATAAGAATAT
50163533 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
*
50163598 ATTTATATTTTACTGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
66 ATTTATATTTTACTGTATAATATATTATGATTTGAGTAAATTCATATAAGAATAT
*
50163653 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
50163717 TAAATATGAT
Statistics
Matches: 175, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
119 9 0.05
120 163 0.93
121 3 0.02
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (120 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
ATTTATATTTTACTGTATAATATATTATGATTTGAGTAAATTCATATAAGAATAT
Found at i:50163584 original size:15 final size:15
Alignment explanation
Indices: 50163549--50163600 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
50163539 TTAAGAATTT
*
50163549 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50163563 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50163577 TATTTAATAATAAT-
1 TATTTAATTATAATA
50163591 TATGTTAATT
1 TAT-TTAATT
50163601 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50163693 original size:18 final size:17
Alignment explanation
Indices: 50163665--50163699 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50163655 ATTATTAAGA
*
50163665 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50163682 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50163700 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50163817 original size:157 final size:157
Alignment explanation
Indices: 50163653--50163969 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
50163643 ATAAGAATAT
50163653 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
50163718 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAATAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
50163783 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
50163810 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
50163875 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTGAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
50163940 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
50163967 TAA
1 TAA
50163970 AGGTATTCTA
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:50163850 original size:18 final size:17
Alignment explanation
Indices: 50163822--50163856 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50163812 ATTATTAAGA
*
50163822 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50163839 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50163857 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50163890 original size:75 final size:75
Alignment explanation
Indices: 50163654--50163892 Score: 207
Period size: 76 Copynumber: 3.1 Consensus size: 75
50163644 TAAGAATATT
50163654 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
50163719 AATATGATTA
66 AATATGATTA
* ** * * * ** * * * *
50163729 AATTATTTATTATTGATATT-AATAATCTTATTAAAATTTAAATA-ATAATAACAATAATAAT-T
1 AATTATTAAGAATT-TTATTAAATTAT-ATATTTTAATTAAAATATAT-TTAATAATAATTATGT
* * * *
50163791 TACCAAAACAAAT-TTCTGCT
63 T----TAA-ATATGAT-T--A
50163811 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
50163876 AATATGATTA
66 AATATGATTA
50163886 AATTATT
1 AATTATT
50163893 TATTATTGAT
Statistics
Matches: 117, Mismatches: 32, Indels: 30
0.65 0.18 0.17
Matches are distributed among these distances:
75 27 0.23
76 28 0.24
77 4 0.03
78 3 0.03
79 3 0.03
80 4 0.03
81 28 0.24
82 20 0.17
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:50164241 original size:24 final size:24
Alignment explanation
Indices: 50164225--50164288 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
50164215 ATAAACTATG
50164225 CTAATAAATACTAAATATATTATA
1 CTAATAAATACTAAATATATTATA
**
50164249 CTAATAAATGTTAAATATATTATA
1 CTAATAAATACTAAATATATTATA
*
50164273 CTAAAAAATACTAAAT
1 CTAATAAATACTAAAT
50164289 CTTCTAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (24 bp):
CTAATAAATACTAAATATATTATA
Found at i:50165573 original size:33 final size:33
Alignment explanation
Indices: 50165536--50165599 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
50165526 TAGGTTTAGG
50165536 TTTAG-TTATTTGTTTTT-TTATAATTTAATTTAA
1 TTTAGTTTATTT-TTTTTGTT-TAATTTAATTTAA
*
50165569 TTTAGTTTATTTTTTTTGTTTTATTTAATTT
1 TTTAGTTTATTTTTTTTGTTTAATTTAATTT
50165600 TCCACATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 20 0.71
34 8 0.29
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (33 bp):
TTTAGTTTATTTTTTTTGTTTAATTTAATTTAA
Found at i:50168653 original size:34 final size:34
Alignment explanation
Indices: 50168607--50168673 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
50168597 TATGTTAGGC
*
50168607 CAAAGAGTAAACTGGTCCTACTGTTAAAACTTAT
1 CAAAGAGCAAACTGGTCCTACTGTTAAAACTTAT
*
50168641 CAAAGAGCAAACTGGTTCTACTGTTAAAACTTA
1 CAAAGAGCAAACTGGTCCTACTGTTAAAACTTA
50168674 CATCCATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (34 bp):
CAAAGAGCAAACTGGTCCTACTGTTAAAACTTAT
Found at i:50169411 original size:34 final size:32
Alignment explanation
Indices: 50169306--50169422 Score: 128
Period size: 34 Copynumber: 3.5 Consensus size: 32
50169296 TTTAGAGTTT
* *
50169306 TTTTTAAAAAATTAATTAAATTAAGTTTTTGGG
1 TTTTTAAAAAATTAATTAAATT-AGGTTTAGGG
* *
50169339 GTTTTAAATAAATTAATTAAATTAGAGATTAGGG
1 TTTTTAAA-AAATTAATTAAATTAG-GTTTAGGG
**
50169373 TTTTTAAGAAAATTAATTAAATTATGGTTTAGTT
1 TTTTTAA-AAAATTAATTAAATTA-GGTTTAGGG
50169407 TTTTTAAAAAA-TAATT
1 TTTTTAAAAAATTAATT
50169423 TTGTGTTTAG
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
32 5 0.07
33 13 0.18
34 52 0.72
35 2 0.03
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (32 bp):
TTTTTAAAAAATTAATTAAATTAGGTTTAGGG
Found at i:50169634 original size:126 final size:126
Alignment explanation
Indices: 50169476--50169740 Score: 345
Period size: 126 Copynumber: 2.1 Consensus size: 126
50169466 CTTTTGTTTT
* * *
50169476 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCT-GAAAATATAATGTAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGATTCTGGAAAA-ATAATGTAAAA
* * * * *
50169540 AACGCTTAAAGCAAGATGTATTGTCAGTAAAATT-ACTGAAAATAGCTCCCATGTAGACGTTC
65 AACACTTAAAGCAAGATGCACTGTCAGTAAAATTGA-TGAAAAAAGCTCCCATGTAGACGCTC
* * * **
50169602 TTTTTCTATAGTAGTTCCTAAAAAAATAATTTTGAGAAGATGATTCTGGACAAATGGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGATTCTGGAAAAATAATGTAAAAA
* * * *
50169667 ACATTTCAAGCAGGATGCACTGTCAGTAAAATTGATGAAAAAAGCTCCCATGTGGACGCTC
66 ACACTTAAAGCAAGATGCACTGTCAGTAAAATTGATGAAAAAAGCTCCCATGTAGACGCTC
50169728 TTTTTCTACAGTA
1 TTTTTCTACAGTA
50169741 TTTCTTGTTT
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
126 114 0.96
127 5 0.04
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGATTCTGGAAAAATAATGTAAAAA
ACACTTAAAGCAAGATGCACTGTCAGTAAAATTGATGAAAAAAGCTCCCATGTAGACGCTC
Found at i:50173286 original size:18 final size:18
Alignment explanation
Indices: 50173263--50173301 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
50173253 GGAAAAGAAA
*
50173263 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
50173281 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
50173299 ACA
1 ACA
50173302 CACCTAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.26, T:0.23
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:50175750 original size:17 final size:18
Alignment explanation
Indices: 50175728--50175761 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50175718 TATTAAATGA
50175728 TAATTT-TATTTTATTTG
1 TAATTTATATTTTATTTG
*
50175745 TAATTTATTTTTTATTT
1 TAATTTATATTTTATTT
50175762 AATAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TAATTTATATTTTATTTG
Found at i:50181580 original size:2 final size:2
Alignment explanation
Indices: 50181573--50181597 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50181563 AGACAAAGGT
50181573 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
50181598 GTTTTTGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:50188074 original size:20 final size:21
Alignment explanation
Indices: 50188036--50188074 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50188026 AAACAAATAC
50188036 TCATATTTATATAATAAAAAT
1 TCATATTTATATAATAAAAAT
*
50188057 TCATATTT-TATTATAAAA
1 TCATATTTATATAATAAAA
50188075 TATTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
TCATATTTATATAATAAAAAT
Found at i:50188163 original size:12 final size:11
Alignment explanation
Indices: 50188111--50188204 Score: 50
Period size: 12 Copynumber: 8.2 Consensus size: 11
50188101 AATATATATT
50188111 TATTATTAAAA
1 TATTATTAAAA
*
50188122 TATTAATATAAA
1 TATTATTA-AAA
*
50188134 TATT-TTCAGTAA
1 TATTATT-A-AAA
50188146 TA-TATTAAGAA
1 TATTATTAA-AA
50188157 TATTATTTAAAA
1 TATTA-TTAAAA
* *
50188169 TA-TAATAATAT
1 TATTATTAA-AA
* *
50188180 TATTGTTAAATT
1 TATTATTAAA-A
50188192 TATTATTAAAA
1 TATTATTAAAA
50188203 TA
1 TA
50188205 AAATTATAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 18
0.68 0.12 0.20
Matches are distributed among these distances:
10 3 0.05
11 22 0.35
12 34 0.54
13 4 0.06
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (11 bp):
TATTATTAAAA
Found at i:50193568 original size:41 final size:41
Alignment explanation
Indices: 50193521--50193671 Score: 205
Period size: 41 Copynumber: 3.7 Consensus size: 41
50193511 CATTGAATGT
* * *
50193521 AAGGGGTCGCTAAGTGTAGATTCCCTGAATCATTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
* *
50193562 AAGGGGTTGCTAAGTGTAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
* *
50193603 AAGGGGTTGCTAAGTGCAGATTCCCCGAAAC-TCTGATAAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCAT-TGATCAAA
* *
50193644 AAGGTGTTACTAAGTGCAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
50193672 GGGGTTGCTA
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 100 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
Found at i:50193819 original size:41 final size:43
Alignment explanation
Indices: 50193674--50193820 Score: 122
Period size: 42 Copynumber: 3.5 Consensus size: 43
50193664 TTCCCCGAGG
* * * * **
50193674 GGTTGCTAAGTGCTGATTCC-CCGAATTATTGATTCCAAAGGT
1 GGTTGCTAAGTGCTAATTCCACCGTATCATTGAATATAAAGGT
* * *
50193716 GGTTGCTAAGTGCTAATTCCACCGTATCCTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTAATTCCACCGTATCATTGAATAT-AAAGGT
* * * * **
50193759 GGTTGATATGTGTTGATTCC-TTGTATCATTGAATAT-AAGGT
1 GGTTGCTAAGTGCTAATTCCACCGTATCATTGAATATAAAGGT
50193800 GGTTGCTAAGTGCTAATTCCA
1 GGTTGCTAAGTGCTAATTCCA
50193821 TCGAGTAACG
Statistics
Matches: 82, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
40 4 0.05
41 16 0.20
42 30 0.37
43 27 0.33
44 5 0.06
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (43 bp):
GGTTGCTAAGTGCTAATTCCACCGTATCATTGAATATAAAGGT
Found at i:50196848 original size:42 final size:43
Alignment explanation
Indices: 50196719--50196861 Score: 141
Period size: 42 Copynumber: 3.4 Consensus size: 43
50196709 GTTACTCGGT
* *
50196719 GGAATCAACACTTAGCAACCACC-TTATATTCAGTGATACGG-
1 GGAATCAACACTTAGCAACCACCTTTATAATCAATGATACGGC
* * * * * *
50196760 GAAATCAGCACATAGAAACC-CCTTCATAATCAAGGATACGGC
1 GGAATCAACACTTAGCAACCACCTTTATAATCAATGATACGGC
* * * *
50196802 GGAATCAACACTTAGCACCCACCTTTAAAATCAATAATTCGG-
1 GGAATCAACACTTAGCAACCACCTTTATAATCAATGATACGGC
*
50196844 GGAATCAGCACTTAGCAA
1 GGAATCAACACTTAGCAA
50196862 TCCCTCAGGG
Statistics
Matches: 79, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
40 2 0.03
41 30 0.38
42 31 0.39
43 16 0.20
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.21
Consensus pattern (43 bp):
GGAATCAACACTTAGCAACCACCTTTATAATCAATGATACGGC
Found at i:50196872 original size:26 final size:25
Alignment explanation
Indices: 50196843--50196891 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
50196833 CAATAATTCG
50196843 GGGAATCAGCACTTAGCAATCCCTCA
1 GGGAATCAGCACTTAGCAA-CCCTCA
*
50196869 GGGAATCTGCACTTAGCAACCCT
1 GGGAATCAGCACTTAGCAACCCT
50196892 TTTTTGATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (25 bp):
GGGAATCAGCACTTAGCAACCCTCA
Found at i:50197014 original size:41 final size:41
Alignment explanation
Indices: 50196869--50197016 Score: 203
Period size: 41 Copynumber: 3.6 Consensus size: 41
50196859 CAATCCCTCA
*
50196869 GGGAATCTGCACTTAGCAACCCTTTTTTGATCAAAG-T-TTCG
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATC--AGTTATTCG
*
50196910 GGGAATCTGCACTTAGCAACTCCTTTTTGATCA-TTGATTCG
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTT-ATTCG
* *
50196951 GGGAATATTCACTTAGCAACCCCTTTTTGATCAGTTATTCG
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTTATTCG
*
50196992 GGGAATCTGTACTTAGCAACCCCTT
1 GGGAATCTGCACTTAGCAACCCCTT
50197017 ACATTCAATG
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.02
41 91 0.96
42 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (41 bp):
GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTTATTCG
Found at i:50208177 original size:26 final size:26
Alignment explanation
Indices: 50208148--50208220 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
50208138 CCTCATCCTT
*
50208148 ATTTTACCCTTAGTAAAATTTTGACA
1 ATTTTACCCCTAGTAAAATTTTGACA
* **
50208174 ATTTTACCCCTGGTAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACA
*
50208200 ACTTTACCCCTAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
50208221 CGAGAAAGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.41
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACA
Found at i:50210186 original size:25 final size:25
Alignment explanation
Indices: 50210151--50210198 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
50210141 TTAAGTATAT
*
50210151 TATTATTTTATTATATTGTAAATTA
1 TATTATATTATTATATTGTAAATTA
*
50210176 TATTATATTATTATATTTTAAAT
1 TATTATATTATTATATTGTAAAT
50210199 AAAAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (25 bp):
TATTATATTATTATATTGTAAATTA
Found at i:50211571 original size:41 final size:37
Alignment explanation
Indices: 50211523--50211627 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 37
50211513 TCGACCTTGA
50211523 GTCGATGAGACACTGGGTGTCATACTGTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-AC--TTACTTCGGATAG
* ** ** * *
50211563 ATTCGATGAGGTACTGGGTACCAACTTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTTACTTCGGATAG
* *
50211601 GCCGATGAGACACTGGGTGTCACCTTA
1 GTCGATGAGACACTGGGTGTCAACTTA
50211628 TTGCTTCGAA
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
37 20 0.40
38 11 0.22
40 2 0.04
41 17 0.34
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (37 bp):
GTCGATGAGACACTGGGTGTCAACTTACTTCGGATAG
Found at i:50216740 original size:57 final size:58
Alignment explanation
Indices: 50216631--50216748 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 58
50216621 ATACAAATGG
* * * *
50216631 TGAAAATGGAGAAATGAGAAACATTTGAAAATGATTATAGTTTTTTCTAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGAAAATAAATATAGTTTTCTCCAAAATGAAAA
* * * *
50216689 TGAAAATGGAGAAATG-GAATCATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGAAAATAAATATAGTTTTCTCCAAAATGAAAA
50216746 TGA
1 TGA
50216749 CCTAAGAAGA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 36 0.69
58 16 0.31
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (58 bp):
TGAAAATGGAGAAATGAGAAACATTTGAAAATAAATATAGTTTTCTCCAAAATGAAAA
Found at i:50220372 original size:11 final size:11
Alignment explanation
Indices: 50220358--50220391 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50220348 AAAATTATTT
50220358 AAAATTTCAAA
1 AAAATTTCAAA
*
50220369 AAAATTACAAA
1 AAAATTTCAAA
*
50220380 AAAAGTTCAAA
1 AAAATTTCAAA
50220391 A
1 A
50220392 GTATTTTGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.68, C:0.09, G:0.03, T:0.21
Consensus pattern (11 bp):
AAAATTTCAAA
Found at i:50224912 original size:12 final size:12
Alignment explanation
Indices: 50224895--50224930 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
50224885 ATATACACAT
*
50224895 TAAAAATATATA
1 TAAAAATATAAA
*
50224907 TAAAAATAAAAA
1 TAAAAATATAAA
50224919 TAAAAATATAAA
1 TAAAAATATAAA
50224931 AATTCAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
TAAAAATATAAA
Found at i:50224929 original size:20 final size:20
Alignment explanation
Indices: 50224904--50224970 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
50224894 TTAAAAATAT
50224904 ATATAAAAA-TAAAAATAAAA
1 ATATAAAAATTAAAAA-AAAA
* *
50224924 ATATAAAAATTCAGAAAAAA
1 ATATAAAAATTAAAAAAAAA
*
50224944 ATAT-AAAATCTAGAAAAAAAC
1 ATATAAAAAT-TA-AAAAAAAA
50224965 ATATAA
1 ATATAA
50224971 TTTATAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 5 0.13
20 18 0.47
21 14 0.37
22 1 0.03
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (20 bp):
ATATAAAAATTAAAAAAAAA
Found at i:50224960 original size:18 final size:20
Alignment explanation
Indices: 50224920--50224963 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
50224910 AAATAAAAAT
50224920 AAAAATATAAAAATTCAGAA
1 AAAAATATAAAAATTCAGAA
50224940 AAAAATAT-AAAA-TCTAGAA
1 AAAAATATAAAAATTC-AGAA
50224959 AAAAA
1 AAAAA
50224964 CATATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.09
19 13 0.57
20 8 0.35
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.18
Consensus pattern (20 bp):
AAAAATATAAAAATTCAGAA
Found at i:50231696 original size:2 final size:2
Alignment explanation
Indices: 50231685--50231721 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
50231675 TTGAGTATGG
*
50231685 AT AT -T AT AT AT AT AC AT AT A- AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50231722 AAAGCATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:50231708 original size:15 final size:15
Alignment explanation
Indices: 50231685--50231719 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
50231675 TTGAGTATGG
*
50231685 ATATTATATATATAC
1 ATATAATATATATAC
*
50231700 ATATAATATATATAT
1 ATATAATATATATAC
50231715 ATATA
1 ATATA
50231720 TAAAAGCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
ATATAATATATATAC
Found at i:50231711 original size:17 final size:17
Alignment explanation
Indices: 50231689--50231722 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50231679 GTATGGATAT
50231689 TATATATATACATATAA
1 TATATATATACATATAA
*
50231706 TATATATATATATATAA
1 TATATATATACATATAA
50231723 AAGCATGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TATATATATACATATAA
Found at i:50234880 original size:15 final size:16
Alignment explanation
Indices: 50234860--50234897 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
50234850 GTTTAGTCCC
*
50234860 TAGGGTTTTT-TGGTT
1 TAGGGTTTTTAGGGTT
50234875 TAGGGTTTTTAGGGTT
1 TAGGGTTTTTAGGGTT
50234891 TAGGGTT
1 TAGGGTT
50234898 AGAGTTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.11, C:0.00, G:0.37, T:0.53
Consensus pattern (16 bp):
TAGGGTTTTTAGGGTT
Found at i:50234961 original size:34 final size:34
Alignment explanation
Indices: 50234882--50234961 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 34
50234872 GTTTAGGGTT
*
50234882 TTTAGGGTTTAGGGTTAGAGTTTTGTTAAAAATAA
1 TTTA-GGTTTAGGGTTAGAGTTTTGATAAAAATAA
* * *
50234917 TTTAGATTTAGGGCTTAGGGTTTT-ATCAAAATAA
1 TTTAGGTTTAGGG-TTAGAGTTTTGATAAAAATAA
*
50234951 TTTTGGTTTAG
1 TTTAGGTTTAG
50234962 AGTGTAGGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 25 0.66
35 13 0.34
ACGTcount: A:0.29, C:0.03, G:0.24, T:0.45
Consensus pattern (34 bp):
TTTAGGTTTAGGGTTAGAGTTTTGATAAAAATAA
Found at i:50235069 original size:34 final size:32
Alignment explanation
Indices: 50234997--50235115 Score: 112
Period size: 34 Copynumber: 3.6 Consensus size: 32
50234987 AATAAATCAA
* **
50234997 GTTTAGAGTTTTTTTAAAATTAATTAAATTAG
1 GTTTAGAATTTTTAAAAAATTAATTAAATTAG
* *
50235029 GTTTTAGAATTTTTAAATAAATAAATAAAATTAG
1 G-TTTAGAATTTTTAAA-AAATTAATTAAATTAG
* *
50235063 TGTTTAGAGTTTTTAAGAAAATTGATTAAATTAGG
1 -GTTTAGAATTTTTAA-AAAATTAATTAAATTA-G
**
50235098 GTTTAGTTTTTTTAAAAA
1 GTTTAGAATTTTTAAAAA
50235116 TAATTGTGTT
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
32 1 0.01
33 15 0.21
34 52 0.73
35 3 0.04
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.46
Consensus pattern (32 bp):
GTTTAGAATTTTTAAAAAATTAATTAAATTAG
Found at i:50235573 original size:126 final size:125
Alignment explanation
Indices: 50235198--50235575 Score: 485
Period size: 125 Copynumber: 3.0 Consensus size: 125
50235188 AATAGTTTTA
* * * **
50235198 GAAAAATTAATTTTGAGAATACGGTTCTGAA-AAGATAATGTCAATAATACTTCAAGCAGGATGC
1 GAAAAA-TAATTTTGAGAAGACGGTTCTGAACAA-ATAGTGT-AAAAACGCTTCAAGCAGGATGC
* *
50235262 ACTGCCAGCAAAATTACTGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
63 ACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* *
50235325 GAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTAAAAACGCTTCAAGTAGGATGCATT
1 GAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTAAAAACGCTTCAAGCAGGATGCACT
* * * *
50235390 GTCAACAAAAATATTGAAAAAAGCTCTCACGTGGACGGTCTTTTTCTACAGTAGTTCCTG
66 GTCAGCAAAATTACTGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * * * *
50235450 GAAAAATAATTTTGAGAAGACGTTTTTGAACAAATGGTATTAAAAGCGCTTCAAGCAGGATGCAC
1 GAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGT-GTAAAAACGCTTCAAGCAGGATGCAC
* *
50235515 TGTCAGTAAAATTGA-TGAGAAAAA-CT-TCCACGTGGACGCTTTTTTTCTACAGTAGTTCCTG
65 TGTCAGCAAAATT-ACTGA-AAAAAGCTCT-CACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
50235576 TTTGGCCTTA
Statistics
Matches: 221, Mismatches: 25, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
125 110 0.50
126 97 0.44
127 14 0.06
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (125 bp):
GAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTAAAAACGCTTCAAGCAGGATGCACT
GTCAGCAAAATTACTGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
Found at i:50238685 original size:25 final size:25
Alignment explanation
Indices: 50238639--50238686 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
50238629 ACTTCTATTT
*
50238639 TATTAAAAATATAAAAATAATTTAC
1 TATTAAAAATATAAAAAAAATTTAC
*
50238664 TATTAAATAT-TAAAAACAAATTT
1 TATTAAAAATATAAAAA-AAATTT
50238687 TATTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (25 bp):
TATTAAAAATATAAAAAAAATTTAC
Found at i:50238690 original size:23 final size:23
Alignment explanation
Indices: 50238635--50238690 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
50238625 AAGAACTTCT
*
50238635 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAAAA
*
50238658 ATTTACTATTAAATAT-TAAAAACAA
1 ATTT--TATTAAAAATATAAAAA-AA
50238683 ATTTTATT
1 ATTTTATT
50238691 TTATTAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 8 0.29
24 6 0.21
25 14 0.50
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAAAA
Found at i:50239142 original size:18 final size:18
Alignment explanation
Indices: 50239106--50239142 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50239096 AGAAATTGAA
* *
50239106 ACATATAAGGGTTATGAT
1 ACATATAAGGGCTAGGAT
50239124 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
50239142 A
1 A
50239143 TGCACTTGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:50240711 original size:25 final size:24
Alignment explanation
Indices: 50240674--50240725 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
50240664 ACTGTTATAA
* *
50240674 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAAAT-ATT
50240698 AAAATTACATAAATGAAAAAATATT
1 AAAATTACA-AAATGAAAAAATATT
50240723 AAA
1 AAA
50240726 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAATATT
Found at i:50244535 original size:19 final size:18
Alignment explanation
Indices: 50244495--50244538 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
50244485 AAAATTCAAA
*
50244495 TATCAATGCAAATTAAGC
1 TATCAATGCAAATCAAGC
* *
50244513 TATCATATGCAAATCATGT
1 TATCA-ATGCAAATCAAGC
50244532 TATCAAT
1 TATCAAT
50244539 TACATAATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (18 bp):
TATCAATGCAAATCAAGC
Found at i:50246600 original size:68 final size:68
Alignment explanation
Indices: 50246500--50246642 Score: 180
Period size: 68 Copynumber: 2.1 Consensus size: 68
50246490 CTGTTAGAAG
* * * * * *
50246500 ATTAAACATGATATGATATTGTGTAAGGCCATAGCTA-GAGTATGGCAACATATGGAGTCTATTA
1 ATTAAACATGAGATCATATTGTGTAAGACCATAGCTAGGA-TATGGCAACATATGGAGACCACTA
50246564 GGAC
65 GGAC
* * * *
50246568 ATTAAACATTAGATCATATTGTGTAAGACCATAGCTAGGATTTGGTAACATATGGAGACCGCTAG
1 ATTAAACATGAGATCATATTGTGTAAGACCATAGCTAGGATATGGCAACATATGGAGACCACTAG
50246633 GAC
66 GAC
50246636 ATTAAAC
1 ATTAAAC
50246643 CAGGAGTCCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 62 0.97
69 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (68 bp):
ATTAAACATGAGATCATATTGTGTAAGACCATAGCTAGGATATGGCAACATATGGAGACCACTAG
GAC
Found at i:50258352 original size:13 final size:13
Alignment explanation
Indices: 50258325--50258353 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50258315 CTTATTGTAA
50258325 TTTTACTTTCATT
1 TTTTACTTTCATT
50258338 TTTTA-TTTCATT
1 TTTTACTTTCATT
50258350 TTTT
1 TTTT
50258354 GTGGAATCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTACTTTCATT
Found at i:50262184 original size:22 final size:21
Alignment explanation
Indices: 50262138--50262184 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
50262128 GACTGCTTGT
* *
50262138 GATGTCGCAACACAACCTGAG
1 GATGTCACAACACAACCTGAA
*
50262159 GATGTCACAACACACCCCTGAA
1 GATGTCACAACACA-ACCTGAA
50262181 GATG
1 GATG
50262185 AGCATACTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.34, C:0.30, G:0.21, T:0.15
Consensus pattern (21 bp):
GATGTCACAACACAACCTGAA
Found at i:50265931 original size:67 final size:67
Alignment explanation
Indices: 50265823--50265953 Score: 244
Period size: 67 Copynumber: 2.0 Consensus size: 67
50265813 TTTCCAATTT
*
50265823 AGAGAGCACACTCCAGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTG
1 AGAGAGCACACTCCAGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCTG
50265888 CA
66 CA
*
50265890 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCT
1 AGAGAGCACACTCCAGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCT
50265954 ATAATATAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (67 bp):
AGAGAGCACACTCCAGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCTG
CA
Found at i:50266169 original size:57 final size:57
Alignment explanation
Indices: 50266076--50266189 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 57
50266066 ACCCTAATTC
*
50266076 AGATTACCCGTCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGGCTATATCA
1 AGATCACCCGTCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGGCTATATCA
* *
50266133 AGATCACCCGTCCGGGCTAGAT-CTTTTTCACACATATTCTTCGGGAGGGCTATATCA
1 AGATCACCCGTCCGGGCTAAATCCATTTTC-CACATATTCTTCGGGAGGGCTATATCA
50266190 TGATAGGATC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
56 6 0.11
57 47 0.89
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (57 bp):
AGATCACCCGTCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGGCTATATCA
Found at i:50269237 original size:21 final size:21
Alignment explanation
Indices: 50269196--50269238 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
50269186 AAACATGAAG
*
50269196 AAGAGAAGCAAGAGAGTGATA
1 AAGAGAAGAAAGAGAGTGATA
*
50269217 AAGAGGAAGAAAGCGAG-GATA
1 AAGA-GAAGAAAGAGAGTGATA
50269238 A
1 A
50269239 TGAAGGAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.53, C:0.05, G:0.35, T:0.07
Consensus pattern (21 bp):
AAGAGAAGAAAGAGAGTGATA
Found at i:50280266 original size:11 final size:11
Alignment explanation
Indices: 50280250--50280325 Score: 51
Period size: 10 Copynumber: 7.5 Consensus size: 11
50280240 TGTTCAAAAA
50280250 TAATATTATTT
1 TAATATTATTT
50280261 TAATA-TA-TT
1 TAATATTATTT
50280270 TAA-A--A-TT
1 TAATATTATTT
*
50280277 TAAT-TTAATT
1 TAATATTATTT
*
50280287 TAATACTTATCT
1 TAATA-TTATTT
*
50280299 TAATAGTATTT
1 TAATATTATTT
*
50280310 T-ATATTAATT
1 TAATATTATTT
50280320 TAATAT
1 TAATAT
50280326 GAAAGTGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
7 6 0.12
8 1 0.02
9 6 0.12
10 16 0.31
11 14 0.27
12 9 0.17
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTATTT
Found at i:50280302 original size:38 final size:37
Alignment explanation
Indices: 50280250--50280323 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 37
50280240 TGTTCAAAAA
*
50280250 TAATATTATTTTAATA-TATTTAAAATTTAATTTAATT
1 TAATATTATCTTAATAGTATTTAAAA-TTAATTTAATT
* *
50280287 TAATACTTATCTTAATAGTATTTTATATTAATTTAAT
1 TAATA-TTATCTTAATAGTATTTAAAATTAATTTAAT
50280324 ATGAAAGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 5 0.16
38 20 0.62
39 7 0.22
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (37 bp):
TAATATTATCTTAATAGTATTTAAAATTAATTTAATT
Found at i:50283237 original size:40 final size:39
Alignment explanation
Indices: 50283161--50283237 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
50283151 GAATCAGTTT
**
50283161 GGGCCTTAGCCCATTCAGATACAGTCTCAGAAATACATTA
1 GGGCCTTAGCCCATTCAGATACAGAATCAG-AATACATTA
*
50283201 GGGCCTTAGCCCATATTAGATACAGAATGCAG-ATACA
1 GGGCCTTAGCCCAT-TCAGATACAGAAT-CAGAATACA
50283238 GTAAATCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 19 0.59
41 10 0.31
42 3 0.09
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (39 bp):
GGGCCTTAGCCCATTCAGATACAGAATCAGAATACATTA
Found at i:50283274 original size:14 final size:14
Alignment explanation
Indices: 50283251--50283288 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
50283241 AATCAGAATC
*
50283251 CTACCTACCAGCCT
1 CTACCCACCAGCCT
50283265 CTACCCACCAGCCT
1 CTACCCACCAGCCT
*
50283279 CTACACACCA
1 CTACCCACCA
50283289 TCTCCGTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.26, C:0.53, G:0.05, T:0.16
Consensus pattern (14 bp):
CTACCCACCAGCCT
Found at i:50287017 original size:18 final size:18
Alignment explanation
Indices: 50286989--50287071 Score: 78
Period size: 18 Copynumber: 4.6 Consensus size: 18
50286979 AATTTATGAG
*
50286989 AAGCTAGCAAAACATATA
1 AAGCTCGCAAAACATATA
* *
50287007 AAGCTCACAAAACACATA
1 AAGCTCGCAAAACATATA
* *
50287025 GAGCTCGCGAAACACT-TA
1 AAGCTCGCAAAACA-TATA
* * *
50287043 GAGCTTGCAAAACATACA
1 AAGCTCGCAAAACATATA
50287061 AAGCTCGCAAA
1 AAGCTCGCAAA
50287072 TCATGTTTAT
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
17 1 0.02
18 50 0.98
ACGTcount: A:0.47, C:0.24, G:0.14, T:0.14
Consensus pattern (18 bp):
AAGCTCGCAAAACATATA
Found at i:50290377 original size:29 final size:29
Alignment explanation
Indices: 50290344--50290403 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
50290334 AACTAAAATA
*
50290344 TTAATTAACCTAA-ATTAACCTAATGGAAT
1 TTAATTAACCTAAGA-TAACCAAATGGAAT
*
50290373 TTAATTAACCTAAGATATCCAAATGGAAT
1 TTAATTAACCTAAGATAACCAAATGGAAT
50290402 TT
1 TT
50290404 CCTATTCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 27 0.96
30 1 0.04
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.35
Consensus pattern (29 bp):
TTAATTAACCTAAGATAACCAAATGGAAT
Found at i:50290452 original size:19 final size:19
Alignment explanation
Indices: 50290428--50290464 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50290418 CGGCCTATGA
50290428 TCAATTAAATCCCTAATTG
1 TCAATTAAATCCCTAATTG
* *
50290447 TCAATTAAGTCGCTAATT
1 TCAATTAAATCCCTAATT
50290465 ACCCTCAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (19 bp):
TCAATTAAATCCCTAATTG
Found at i:50300664 original size:30 final size:30
Alignment explanation
Indices: 50300628--50300687 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
50300618 GAGTTTAATG
50300628 TTTAGTTAGGGTATTTTTACTTATTTTTAT
1 TTTAGTTAGGGTATTTTTACTTATTTTTAT
50300658 TTTAGTTAGGGTATTTTTACTTATTTTTAT
1 TTTAGTTAGGGTATTTTTACTTATTTTTAT
50300688 AGTGGTTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.03, G:0.13, T:0.63
Consensus pattern (30 bp):
TTTAGTTAGGGTATTTTTACTTATTTTTAT
Found at i:50308317 original size:18 final size:17
Alignment explanation
Indices: 50308269--50308320 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 17
50308259 CCCCTATTTA
*
50308269 ATTTCCCTCAAACTTTT
1 ATTTCCCCCAAACTTTT
* *
50308286 A-TTCTCCAAAACTTTT
1 ATTTCCCCCAAACTTTT
50308302 ATTTTCCCCCAAACTTTT
1 A-TTTCCCCCAAACTTTT
50308320 A
1 A
50308321 CTTCTCACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 13 0.46
17 1 0.04
18 14 0.50
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTTCCCCCAAACTTTT
Found at i:50315465 original size:19 final size:19
Alignment explanation
Indices: 50315441--50315478 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
50315431 CTTTGGTGTC
50315441 TCGTGCAACATTATACATA
1 TCGTGCAACATTATACATA
*
50315460 TCGTGCAATATTATACATA
1 TCGTGCAACATTATACATA
50315479 CTTGTGGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (19 bp):
TCGTGCAACATTATACATA
Found at i:50316922 original size:44 final size:44
Alignment explanation
Indices: 50316859--50316946 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
50316849 ATAACAAGTA
50316859 CATAGCTGTTTTGTTACTCGACAATCCAATAGCTGGTTTGGCAT
1 CATAGCTGTTTTGTTACTCGACAATCCAATAGCTGGTTTGGCAT
50316903 CATAGCTGTTTTGTTACTCGACAATCCAATAGCTGGTTTGGCAT
1 CATAGCTGTTTTGTTACTCGACAATCCAATAGCTGGTTTGGCAT
50316947 TTTCATTTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (44 bp):
CATAGCTGTTTTGTTACTCGACAATCCAATAGCTGGTTTGGCAT
Found at i:50320427 original size:18 final size:18
Alignment explanation
Indices: 50320406--50320445 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
50320396 TAATACATTT
*
50320406 TATTTTAATTT-TTAAAAA
1 TATTTAAATTTATT-AAAA
50320424 TATTTAAATTTATTAAAA
1 TATTTAAATTTATTAAAA
50320442 TATT
1 TATT
50320446 AATATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATTTAAATTTATTAAAA
Found at i:50327639 original size:42 final size:42
Alignment explanation
Indices: 50327592--50327673 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
50327582 ACAACGGTCC
50327592 CGGATGAACATTTCCCTAATTTCAAAGTAA-AATTCTAAAGCA
1 CGGATGAACATTTCCCTAATTTC-AAGTAACAATTCTAAAGCA
* *
50327634 CGGATGAACATTTCTCTAATTTCAAGTAACAATTTTAAAG
1 CGGATGAACATTTCCCTAATTTCAAGTAACAATTCTAAAG
50327674 AATCCTAACT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 6 0.16
42 31 0.84
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (42 bp):
CGGATGAACATTTCCCTAATTTCAAGTAACAATTCTAAAGCA
Found at i:50329135 original size:26 final size:25
Alignment explanation
Indices: 50329090--50329140 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
50329080 ATTATTTTAT
* *
50329090 TAAATAAATAATTTTTAAAATATAA
1 TAAATAAATAATTTTAAAAACATAA
50329115 TAAATTAAATACA-TTTAAAAACATAA
1 TAAA-TAAATA-ATTTTAAAAACATAA
50329141 AAACATACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 4 0.18
26 17 0.77
27 1 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TAAATAAATAATTTTAAAAACATAA
Found at i:50329400 original size:12 final size:12
Alignment explanation
Indices: 50329383--50329420 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
50329373 AAACAACACC
50329383 AAACAACACAAA
1 AAACAACACAAA
*
50329395 AAACAACAC-TA
1 AAACAACACAAA
50329406 AAACAACACAAA
1 AAACAACACAAA
50329418 AAA
1 AAA
50329421 TAGCACCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.74, C:0.24, G:0.00, T:0.03
Consensus pattern (12 bp):
AAACAACACAAA
Found at i:50329413 original size:23 final size:22
Alignment explanation
Indices: 50329372--50329420 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 22
50329362 AAGTAGCATC
*
50329372 AAAACAACACCAAACAACACAA
1 AAAACAACACAAAACAACACAA
50329394 AAAACAACACTAAAACAACACAA
1 AAAACAACAC-AAAACAACACAA
50329417 AAAA
1 AAAA
50329421 TAGCACCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.71, C:0.27, G:0.00, T:0.02
Consensus pattern (22 bp):
AAAACAACACAAAACAACACAA
Found at i:50330425 original size:30 final size:30
Alignment explanation
Indices: 50330385--50330441 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
50330375 GGGATGTGAG
*
50330385 GGGAGAAAAAGTTATGGGGGGAAAGTGGGA
1 GGGAGAAAAAGTTATGGGAGGAAAGTGGGA
* *
50330415 GGGAGTAAAAGTTTTGGGAGGAAAGTG
1 GGGAGAAAAAGTTATGGGAGGAAAGTG
50330442 AAAAGGTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.47, T:0.18
Consensus pattern (30 bp):
GGGAGAAAAAGTTATGGGAGGAAAGTGGGA
Found at i:50334645 original size:17 final size:17
Alignment explanation
Indices: 50334623--50334659 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
50334613 ATATTGATGA
*
50334623 TAAGTTTAAAAATATAT
1 TAAGTTTAAAAATAAAT
*
50334640 TAAGTTTAAATATAAAT
1 TAAGTTTAAAAATAAAT
50334657 TAA
1 TAA
50334660 TGTCAGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
TAAGTTTAAAAATAAAT
Found at i:50336133 original size:50 final size:50
Alignment explanation
Indices: 50336070--50336594 Score: 385
Period size: 50 Copynumber: 10.5 Consensus size: 50
50336060 TGGAAAGTAG
*
50336070 GATTCGCTATTGTGG-TTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAA
1 GATTCGCTGTTGTGGCTTT-AATCTTTTTAACTGCAATGTCGGGGAAGCAA
* *
50336120 GATTCGCTGTTGTGGCTTTAATATTTTTAACTGCAATGTCGAGGAAGCAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
* * ** * * * * *
50336170 GATTCGCCGTTGTGGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGTAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGA-AGCAA
* * * * *
50336221 GATTCG-TCGTTGTGACTTTATTCCTTTTAACTGCAATGTTGGGAAAGCAA
1 GATTCGCT-GTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
* * * ** ** * * * * *
50336271 GATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAGGTAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
* * * * *
50336321 AATTTGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
* * * * * * * *
50336371 GATTCGCCGTTGTGGCTTTAATCTGTTTCATTGCACTGCCTGGGAGAGTAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGA-AGCAA
* * *
50336422 GATTCG-TCGTTGTGAC-TTAATCCTTTTAACTGCAATGTCGGGAAAGCAA
1 GATTCGCT-GTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
* * * ** * * ** * * *
50336471 GATTCACCGTTGTGGCTTTAATCTGTTCCATTACACCGTCTGGGAGGTAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
* * * * *
50336521 GATTCACTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGG-AGACAA
1 GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAG-CAA
* *
50336571 GATTCACCGTTGTGGCTTTAATCT
1 GATTCGCTGTTGTGGCTTTAATCT
50336595 GTTCCACTGC
Statistics
Matches: 348, Mismatches: 118, Indels: 18
0.72 0.24 0.04
Matches are distributed among these distances:
49 17 0.05
50 276 0.79
51 55 0.16
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.35
Consensus pattern (50 bp):
GATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
Found at i:50336384 original size:100 final size:99
Alignment explanation
Indices: 50336118--50336626 Score: 632
Period size: 100 Copynumber: 5.1 Consensus size: 99
50336108 TCGGGGAAGC
* * * *
50336118 AAGATTCGCTGTTGTGGCTTTAATATTTTTAACTGCAATGTCGAGGAAGCAAGATTCGCCGTTGT
1 AAGATTCGCTGTTGT-GCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGTTGT
*
50336183 GGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGT
65 GGCTTTAATCTGTTCCATTGCACCGCCTGGGAG-GT
* * * *
50336219 AAGATTCG-TCGTTGTGACTTTATTCCTTTTAACTGCAATGTTGGGAAAGCAAGATTCACCGTTG
1 AAGATTCGCT-GTTGTG-CTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGTTG
* *
50336283 TGGCTTTAATCTGTTCCACTGCACCGCCTGAGAGGT
64 TGGCTTTAATCTGTTCCATTGCACCGCCTGGGAGGT
* * * *
50336319 AAAATTTGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCGCCGTTGT
1 AAGATTCGCTGTTGT-GCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGTTGT
* *
50336384 GGCTTTAATCTGTTTCATTGCACTGCCTGGGAGAGT
65 GGCTTTAATCTGTTCCATTGCACCGCCTGGGAG-GT
* * *
50336420 AAGATTCG-TCGTTGTGAC-TTAATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTG
1 AAGATTCGCT-GTTGTG-CTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGTTG
* *
50336483 TGGCTTTAATCTGTTCCATTACACCGTCTGGGAGGT
64 TGGCTTTAATCTGTTCCATTGCACCGCCTGGGAGGT
* * *
50336519 AAGATTCACTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCA-GGG-AGACAAGATTCACCGTT
1 AAGATTCGCTGTTGT-GCTTTAATCTTTTTAACTGCAATGT-AGGGGAAG-CAAGATTCACCGTT
* **
50336582 GTGGCTTTAATCTGTTCCACTGCACCGCCTGAAAGGT
63 GTGGCTTTAATCTGTTCCATTGCACCGCCTGGGAGGT
50336619 AAGATTCG
1 AAGATTCG
50336627 TAATCTTCAA
Statistics
Matches: 351, Mismatches: 45, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
99 16 0.05
100 236 0.67
101 99 0.28
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (99 bp):
AAGATTCGCTGTTGTGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGTTGTG
GCTTTAATCTGTTCCATTGCACCGCCTGGGAGGT
Found at i:50336559 original size:200 final size:201
Alignment explanation
Indices: 50336118--50336627 Score: 785
Period size: 200 Copynumber: 2.5 Consensus size: 201
50336108 TCGGGGAAGC
* * * * *
50336118 AAGATTCGCTGTTGTGGCTTTAATATTTTTAACTGCAATGTCGAGGAAGCAAGATTCGCCGTTGT
1 AAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCGCCGTTGT
*
50336183 GGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGTAAGATTCGTCGTTGTGACTTTATTCCTTT
66 GGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGTAAGATTCGTCGTTGTGACTTTAATCCTTT
* *
50336248 TAACTGCAATGTTGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTG
131 TAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACACCGCCTG
50336313 AGAGGT
196 AGAGGT
* *
50336319 AAAATTTGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCGCCGTTGT
1 AAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCGCCGTTGT
*
50336384 GGCTTTAATCTGTTTCATTGCACTGCCTGGGAGAGTAAGATTCGTCGTTGTGAC-TTAATCCTTT
66 GGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGTAAGATTCGTCGTTGTGACTTTAATCCTTT
* *
50336448 TAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCATTACACCGTCTG
131 TAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACACCGCCTG
*
50336513 GGAGGT
196 AGAGGT
* * *
50336519 AAGATTCACTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCA-GGG-AGACAAGATTCACCGTT
1 AAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGT-AGGGGAAG-CAAGATTCGCCGTT
* * **
50336582 GTGGCTTTAATCTGTTCCACTGCACCGCCTGAAAG-GTAAGATTCGT
64 GTGGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGTAAGATTCGT
50336628 AATCTTCAAC
Statistics
Matches: 283, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
199 13 0.05
200 158 0.56
201 112 0.40
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (201 bp):
AAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCGCCGTTGT
GGCTTTAATCTGTTCCATTGCACTGCCTGGGAGAGTAAGATTCGTCGTTGTGACTTTAATCCTTT
TAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACACCGCCTG
AGAGGT
Found at i:50336764 original size:44 final size:45
Alignment explanation
Indices: 50336716--50337028 Score: 108
Period size: 44 Copynumber: 7.2 Consensus size: 45
50336706 AGATTTGCCG
*
50336716 TCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCT-GTAA
1 TCTTCAATCTGCTCCACTATTGCTTAGGGAGATAAGATCTCGTAA
* * * * * * *
50336760 TCTTCAACCT-ATCCCACTGTTGAC-CAGGGAGATAGGA-CTGGT-G
1 TCTTCAATCTGCT-CCACTATTG-CTTAGGGAGATAAGATCTCGTAA
* * * * * * ***
50336803 GCTTAAATCTGTTTCC-CTACT-CCTGGGGAAGATAAGAT-TCGCCG
1 TCTTCAATCTG-CTCCACTATTGCTTAGGG-AGATAAGATCTCGTAA
*
50336847 TCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCT-GTAA
1 TCTTCAATCTGCTCCACTATTGCTTAGGGAGATAAGATCTCGTAA
* * ** * * * * *
50336891 TCTTCAACCT-ATCCCACTGCTGAC-CAGGGAGATAGGA-ATAGT-G
1 TCTTCAATCTGCT-CCACTATTG-CTTAGGGAGATAAGATCTCGTAA
* * *
50336934 GCTTAAATCTGCTGCC-CTACTT-CTT-GGGAAGATAAGATTCACCGT--
1 TCTTCAATCTGCT-CCACTA-TTGCTTAGGG-AGATAAGA-TC-TCGTAA
*
50336979 T-TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCT-GTAA
1 TCTTCAATCTGCTCCACTATTGCTTAGGGAGATAAGATCTCGTAA
50337022 TCTTCAA
1 TCTTCAA
50337029 CCTATCCCAC
Statistics
Matches: 187, Mismatches: 54, Indels: 56
0.63 0.18 0.19
Matches are distributed among these distances:
41 3 0.02
42 7 0.04
43 50 0.27
44 113 0.60
45 12 0.06
46 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (45 bp):
TCTTCAATCTGCTCCACTATTGCTTAGGGAGATAAGATCTCGTAA
Found at i:50336856 original size:131 final size:131
Alignment explanation
Indices: 50336618--50337742 Score: 1789
Period size: 131 Copynumber: 8.7 Consensus size: 131
50336608 GCCTGAAAGG
* *
50336618 TAAGAT-TCGTAATCTTCAACCTATCCCACTGCTGACTAGGGAGATAGGACTAGTGGCTTAAATC
1 TAAGATCT-GTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATC
*
50336682 -GTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGA
65 TGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGA
50336746 GA
130 GA
*
50336748 TAAGATCTGTAATCTTCAACCTATCCCACTGTTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
50336813 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50336878 A
131 A
* *
50336879 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGAATAGTGGCTTAAATCT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
* * * * * *
50336944 GCTGCCCTACTTCTTGGGAAGATAAGATTCACCGTTTTCGATCTGCTCCACTATTGCTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50337009 A
131 A
*
50337010 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATAT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
* * * *
50337075 GTTTCCCTACTCCTAGGGAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTATTGCTTAAGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50337140 A
131 A
50337141 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
*
50337206 GTTTCCCTACTCTTGGGGAAGATAAGATTCGCCG---TC--T-T--T----TA---CTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50337256 A
131 A
* *
50337257 TAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
* * *
50337322 GCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTGCTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50337387 A
131 A
*
50337388 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATTT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
* *
50337453 GTTTTCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTTCTCCACTATTGCTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50337518 A
131 A
* *
50337519 TAAGATCTGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
* * *
50337584 GTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACAATTGCTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
50337649 A
131 A
* * * * *
50337650 TAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATTGATGGCTTAAATCT
1 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
*
50337715 GCTTCCCTACTCCTGGGGAAGATAAGAT
66 GTTTCCCTACTCCTGGGGAAGATAAGAT
50337743 CCGTAATCTT
Statistics
Matches: 918, Mismatches: 60, Indels: 33
0.91 0.06 0.03
Matches are distributed among these distances:
116 104 0.11
119 4 0.00
121 1 0.00
122 1 0.00
123 1 0.00
124 1 0.00
125 1 0.00
126 1 0.00
128 3 0.00
130 59 0.06
131 742 0.81
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (131 bp):
TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
GTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
A
Found at i:50337340 original size:116 final size:116
Alignment explanation
Indices: 50337131--50337359 Score: 413
Period size: 116 Copynumber: 2.0 Consensus size: 116
50337121 TCCACTATTG
* *
50337131 CTTAAGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTG
1 CTTAAGGAGATAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
* *
50337196 GCTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTTTA
66 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTTTA
*
50337247 CTTAGGGAGATAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
1 CTTAAGGAGATAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
50337312 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTT
66 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTT
50337360 CGATCTGATC
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 108 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (116 bp):
CTTAAGGAGATAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTTTA
Found at i:50337695 original size:509 final size:516
Alignment explanation
Indices: 50336618--50337746 Score: 1781
Period size: 509 Copynumber: 2.2 Consensus size: 516
50336608 GCCTGAAAGG
* * *
50336618 TAAGATTCGTAATCTTCAACCTATCCCACTGCTGACTAGGGAGATAGGACTAGTGGCTTAAATC-
1 TAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
*
50336682 GTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAG
66 GTTTCCCTACTCCTGGGGAAGATAAGA-TT-CCGTC-TCGA--TGCT---CTATTACTTAGGGAG
* * *
50336747 ATAAGATCTGTAATCTTCAACCTATCCCACTGTTGACCAGGGAGATAGGACTGGTGGCTTAAATC
123 ATAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATC
* * *
50336812 TGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGA
188 TGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTGCTTAGGGA
50336877 GATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGAATAGTGGCTTAAAT
253 GATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGAATAGTGGCTTAAAT
* * *
50336942 CTGCTGCCCTACTTCTTGGGAAGATAAGATTCACCGTTTTCGATCTGCTCCACTATTGCTTAGGG
318 CTGCTGCCCTACTCCTGGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTAGGG
50337007 AGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAA
383 AGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAA
* * *
50337072 TATGTTTCCCTACTCCTAGGGAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTATTGCTTAAG
448 TATGTTTCCCTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACAATTGCTTAAG
50337137 GAGA
513 GAGA
*
50337141 TAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
1 TAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
*
50337206 GTTTCCCTACTCTTGGGGAAGATAAGATT-CG-C-CG-T-CT-T-TTACTTAGGGAGATAAAATC
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCCGTCTCGATGCTCTATTACTTAGGGAGATAAAATC
50337264 TGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCC
131 TGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCC
50337329 TACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGAT
196 TACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGAT
* * * * **
50337394 CTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATTTGTTTTC
261 CTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGAATAGTGGCTTAAATCTGCTGCC
* *
50337459 CTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTTCTCCACTATTGCTTAGGGAGATAAGA
326 CTACTCCTGGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
* * *
50337524 TCTGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGTTTC
391 TCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATATGTTTC
* * * *
50337589 CCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACAATTGCTTAGGGAGA
456 CCTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACAATTGCTTAAGGAGA
* * * *
50337650 TAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATTGATGGCTTAAATCT
1 TAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
*
50337715 GCTTCCCTACTCCTGGGGAAGATAAGA-TCCGT
66 GTTTCCCTACTCCTGGGGAAGATAAGATTCCGT
50337747 AATCTTCAAC
Statistics
Matches: 563, Mismatches: 40, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
508 1 0.00
509 465 0.83
510 1 0.00
514 2 0.00
515 1 0.00
518 2 0.00
520 1 0.00
521 2 0.00
523 62 0.11
524 26 0.05
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (516 bp):
TAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATCT
GTTTCCCTACTCCTGGGGAAGATAAGATTCCGTCTCGATGCTCTATTACTTAGGGAGATAAAATC
TGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCC
TACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGAT
CTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGAATAGTGGCTTAAATCTGCTGCC
CTACTCCTGGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
TCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAATATGTTTC
CCTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACAATTGCTTAAGGAGA
Found at i:50337780 original size:218 final size:218
Alignment explanation
Indices: 50337511--50337960 Score: 724
Period size: 218 Copynumber: 2.1 Consensus size: 218
50337501 CACTATTGCT
* *
50337511 TAGGG-AGATAAGATCTGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTTGTGG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGG
* * *
50337575 CTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCC-GTCTTCGATTTGCTCCACAATT
66 CTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCACT-TTCGATCTGCTCCACAATT
* * *
50337639 GCTTAGGGAGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATTGAT
130 GCTTAGGGAGATAAGATCCGTAATCCTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGAT
50337704 GGCTTAAATCTGCTTCCCTACTCC
195 GGCTTAAATCTGCTTCCCTACTCC
*
50337728 TGGGGAAGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGG
* *
50337793 CTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCACTTTCGATCTGCTCCACTATTG
66 CTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCACTTTCGATCTGCTCCACAATTG
* * * *
50337858 CTTAGGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTTACTAGGGAGATAGGACTGGTG
131 CTTAGGGAGATAAGATCCGTAATCCTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGATG
* *
50337923 GCTTAAATCTGTTTCCCTACTTC
196 GCTTAAATCTGCTTCCCTACTCC
50337946 TAGGGAAGATAAGAT
1 TAGGGAAGATAAGAT
50337961 TCACCGTCTT
Statistics
Matches: 213, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
217 4 0.02
218 208 0.98
219 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (218 bp):
TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGG
CTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCACTTTCGATCTGCTCCACAATTG
CTTAGGGAGATAAGATCCGTAATCCTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGATG
GCTTAAATCTGCTTCCCTACTCC
Found at i:50337794 original size:87 final size:87
Alignment explanation
Indices: 50337647--50337829 Score: 296
Period size: 87 Copynumber: 2.1 Consensus size: 87
50337637 TTGCTTAGGG
* *
50337647 AGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATTGATGGCTTAAA
1 AGATAAGATCCGTAATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATAGATGGCTTAAA
50337712 TCTGCTTCCCTACTCCTGGGGA
66 TCTGCTTCCCTACTCCTGGGGA
* *
50337734 AGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAG-TGGCTTAA
1 AGATAAGATCCGTAATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGA-TAGATGGCTTAA
* *
50337798 ATCTGTTTCCTTACTCCTGGGGA
65 ATCTGCTTCCCTACTCCTGGGGA
50337821 AGATAAGAT
1 AGATAAGAT
50337830 TCGCCACTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 87 0.98
88 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (87 bp):
AGATAAGATCCGTAATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATAGATGGCTTAAA
TCTGCTTCCCTACTCCTGGGGA
Found at i:50337846 original size:131 final size:131
Alignment explanation
Indices: 50337734--50338445 Score: 1057
Period size: 131 Copynumber: 5.4 Consensus size: 131
50337724 CTCCTGGGGA
*
50337734 AGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * *
50337799 TCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCC-ACTTTCGATCTGCTCCACTATTGCTTAG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC-TTCGATCTGCTCCACTATTGCCTAG
50337863 GG
130 GG
* * * *
50337865 AGATAAGATCCGTAATCTTCAACCCATCCCACTGCTTACTAGGGAGATAGGACTGGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * * *
50337930 TCTGTTTCCCTACTTCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCCTAGG
50337995 G
131 G
* *
50337996 AGATAAGATCTGTGATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * * * ** *
50338061 TCTGCTTCCCTACTCCTGGAGAAGATAAGATTCGTCGTCTTCGATCTGTTCCACTATCACTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCCTAGG
50338126 G
131 G
* * * *
50338127 AGATAAGATCTGTAATCTTCAAGCTATCACACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * * *** * * *
50338192 TCTGCTTCCCTATTCCTAGGGAAGATAAGATTCATTGCCTTCGATCTGCTCCACTATTGCTTAGA
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCCTAGG
50338257 G
131 G
* *
50338258 AGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGAGATAGGACTGGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* *
50338323 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGTTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCCTAGG
50338388 G
131 G
*
50338389 AGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGT
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGT
50338446 AGTCTTCCAC
Statistics
Matches: 525, Mismatches: 55, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
131 524 1.00
132 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (131 bp):
AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCCTAGG
G
Found at i:50337933 original size:349 final size:349
Alignment explanation
Indices: 50337385--50338091 Score: 1161
Period size: 349 Copynumber: 2.0 Consensus size: 349
50337375 CTGCTTAGGG
* *
50337385 AGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * *
50337450 TTTGTTTTCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTTCTCCACTATTGCTTAGG
66 TCTGTTTTCCTACTCCTGGGGAAGATAAGATTCGCCCTCTTCGATCTGCTCCACTATTGCTTAGG
* * * *
50337515 GAGATAAGATCTGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTTGTGGCTTAA
131 GAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAA
* * *
50337580 ATCTGTTTCCCTAC-TCTTGGGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACAATTGCTTA
196 ATCTGTTTCCCTACTTC-TAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACAATTGCTTA
*
50337644 GGGAGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGA-TTGATGGCT
260 GGGAGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAG-TGGCT
*
50337708 TAAATCTGCTTCCCTACTCCTGGGGA
324 TAAATCTGCTTCCCTACTCCTGGAGA
*
50337734 AGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
50337799 TCTG-TTTCCTTACTCCTGGGGAAGATAAGATTCGCCACT-TTCGATCTGCTCCACTATTGCTTA
66 TCTGTTTTCC-TACTCCTGGGGAAGATAAGATTCGCC-CTCTTCGATCTGCTCCACTATTGCTTA
* *
50337862 GGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTTACTAGGGAGATAGGACTGGTGGCTT
129 GGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTT
*
50337927 AAATCTGTTTCCCTACTTCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTT
194 AAATCTGTTTCCCTACTTCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACAATTGCTT
* * *
50337992 AGGGAGATAAGATCTGTGATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCT
259 AGGGAGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCT
50338057 TAAATCTGCTTCCCTACTCCTGGAGA
324 TAAATCTGCTTCCCTACTCCTGGAGA
50338083 AGATAAGAT
1 AGATAAGAT
50338092 TCGTCGTCTT
Statistics
Matches: 333, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
348 5 0.02
349 323 0.97
350 5 0.02
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (349 bp):
AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
TCTGTTTTCCTACTCCTGGGGAAGATAAGATTCGCCCTCTTCGATCTGCTCCACTATTGCTTAGG
GAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAA
ATCTGTTTCCCTACTTCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACAATTGCTTAG
GGAGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTA
AATCTGCTTCCCTACTCCTGGAGA
Found at i:50338166 original size:480 final size:480
Alignment explanation
Indices: 50337249--50338222 Score: 1574
Period size: 480 Copynumber: 2.0 Consensus size: 480
50337239 GTCTTTTACT
* *
50337249 TAGGG-AGATAAAATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
*
50337313 CTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGATCCACTACTG
66 CTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCCTCTTCGATCTGATCCACTACTG
* *
50337378 CTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTG
131 CTTAGGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGGTG
* * * * *
50337443 GCTTAAATTTGTTTTCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTTCTCCACTATT
196 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATT
* *
50337508 GCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTTGT
261 GCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGT
* * * *
50337573 GGCTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACAAT
326 GGCTTAAATCTGCTTCCCTACTCCTGGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACAAT
** * * *
50337638 TGCTTAGGGAGATAAGATCCGTCATCCTCAACCTATCCCACTGCTGACCAGGGAGATAGGATTGA
391 CACTTAGGGAGATAAGATCCGTAATCCTCAACCTATCACACTGCTGACCAGGGAGATAGGACTGA
50337703 TGGCTTAAATCTGCTTCCCTACTCC
456 TGGCTTAAATCTGCTTCCCTACTCC
* *
50337728 TGGGGAAGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
* * * *
50337793 CTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCACT-TTCGATCTGCTCCACTATT
66 CTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC-CTCTTCGATCTGATCCACTACT
* *
50337857 GCTTAGGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTTACTAGGGAGATAGGACTGGT
130 GCTTAGGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGGT
*
50337922 GGCTTAAATCTGTTTCCCTACTTCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTAT
195 GGCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTAT
*
50337987 TGCTTAGGGAGATAAGATCTGTGATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAG
260 TGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAG
* * *
50338052 TGGCTTAAATCTGCTTCCCTACTCCTGGAGAAGATAAGATTCGTCGTCTTCGATCTGTTCCACTA
325 TGGCTTAAATCTGCTTCCCTACTCCTGGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACAA
* * *
50338117 TCACTTAGGGAGATAAGATCTGTAATCTTCAAGCTATCACACTGCTGACCAGGGAGATAGGACTG
390 TCACTTAGGGAGATAAGATCCGTAATCCTCAACCTATCACACTGCTGACCAGGGAGATAGGACTG
* *
50338182 GTGGCTTAAATCTGCTTCCCTATTCC
455 ATGGCTTAAATCTGCTTCCCTACTCC
50338208 TAGGGAAGATAAGAT
1 TAGGGAAGATAAGAT
50338223 TCATTGCCTT
Statistics
Matches: 453, Mismatches: 40, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
479 4 0.01
480 448 0.99
481 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (480 bp):
TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
CTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCCTCTTCGATCTGATCCACTACTG
CTTAGGGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTGACCAGGGAGATAGGACTGGTG
GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATT
GCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGT
GGCTTAAATCTGCTTCCCTACTCCTGGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACAAT
CACTTAGGGAGATAAGATCCGTAATCCTCAACCTATCACACTGCTGACCAGGGAGATAGGACTGA
TGGCTTAAATCTGCTTCCCTACTCC
Found at i:50338398 original size:262 final size:262
Alignment explanation
Indices: 50337734--50338442 Score: 1170
Period size: 262 Copynumber: 2.7 Consensus size: 262
50337724 CTCCTGGGGA
*
50337734 AGATAAGATCCGTAATCTTCAACCTATCCTACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * *
50337799 TCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCC-ACTTTCGATCTGCTCCACTATTGCTTAG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC-TTCGATCTGTTCCACTATTGCTTAG
* * * *
50337863 GGAGATAAGATCCGTAATCTTCAACCCATCCCACTGCTTACTAGGGAGATAGGACTGGTGGCTTA
130 GGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTA
* *
50337928 AATCTGTTTCCCTACTTCTAGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTA
195 AATCTGCTTCCCTACTTCTAGGGAAGATAAGATTCACCGCCTTCGATCTGCTCCACTATTGCTTA
*
50337993 GGG
260 GAG
* *
50337996 AGATAAGATCTGTGATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
* * * **
50338061 TCTGCTTCCCTACTCCTGGAGAAGATAAGATTCGTCGTCTTCGATCTGTTCCACTATCACTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGTTCCACTATTGCTTAGG
* *
50338126 GAGATAAGATCTGTAATCTTCAAGCTATCACACTGCTGACCAGGGAGATAGGACTGGTGGCTTAA
131 GAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAA
**
50338191 ATCTGCTTCCCTA-TTCCTAGGGAAGATAAGATTCATTGCCTTCGATCTGCTCCACTATTGCTTA
196 ATCTGCTTCCCTACTT-CTAGGGAAGATAAGATTCACCGCCTTCGATCTGCTCCACTATTGCTTA
50338255 GAG
260 GAG
* *
50338258 AGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGAGATAGGACTGGTGGCTTAAA
1 AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
50338323 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGTTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGTTCCACTATTGCTTAGG
50338388 GAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACT
131 GAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACT
50338443 AGTAGTCTTC
Statistics
Matches: 412, Mismatches: 33, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
261 2 0.00
262 409 0.99
263 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (262 bp):
AGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAA
TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGTTCCACTATTGCTTAGG
GAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTGGTGGCTTAA
ATCTGCTTCCCTACTTCTAGGGAAGATAAGATTCACCGCCTTCGATCTGCTCCACTATTGCTTAG
AG
Found at i:50338476 original size:44 final size:43
Alignment explanation
Indices: 50338404--50338794 Score: 415
Period size: 44 Copynumber: 8.9 Consensus size: 43
50338394 AGATCTGTAA
* * ** *
50338404 TCTTCAACCTATCCCACTGCTGACCAGGGAGA-TAGGACTAGTAG
1 TCTTCCACCTATTCCACTGCTGGTCAGGGA-ACTAGGACTA-CAG
* * *
50338448 TCTTCCACCTATTCCACTACTGGTCAGGGAACTAGGACTTGCGG
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGAC-TACAG
* * * *
50338492 TCTTCCGCCCATTCCACTGCTGGTCAGGGAACTAGGACTTGCGG
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGAC-TACAG
* ** *
50338536 TCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGTTTTACAA
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGG-ACTACAG
* * * *
50338580 TCTTTCGCCTATTCCACTGCTGGTGAGGGAACTAGGACTTATAG
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGAC-TACAG
** *
50338624 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGTTTTACAA
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGG-ACTACAG
* *
50338668 TCTTTCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAG
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGAC-TACAG
* ** *
50338712 TCTTCCACCTATTCCACTGCTAGTCAGGGAACTAGGTTTTACAA
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGG-ACTACAG
* *
50338756 TCTTTCGCCTATTCCACTGCTGGTCAGGGAACTAGGACT
1 TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGACT
50338795 TATCTTTGAT
Statistics
Matches: 294, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
43 2 0.01
44 291 0.99
45 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (43 bp):
TCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGACTACAG
Found at i:50338477 original size:88 final size:88
Alignment explanation
Indices: 50338411--50338796 Score: 526
Period size: 88 Copynumber: 4.4 Consensus size: 88
50338401 TAATCTTCAA
* ** * *
50338411 CCTATCCCACTGCTGACCAGGGAGA-TAGGAC-TAGTAGTCTTCCACCTATTCCACTACTGGTCA
1 CCTATTCCACTGCTGGTCAGGGA-ACTAGGACTTA-CAGTCTTCCACCTATTCCACTGCTGGTCA
* ** *
50338474 GGGAACTAGGA-CTTGCGGTCTTCCG
64 GGGAACTAGGATC-TACAATCTTTCG
* * * *
50338499 CCCATTCCACTGCTGGTCAGGGAACTAGGACTTGCGGTCTTCCGCCTATTCCACTGCTGGTCAGG
1 CCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGG
* *
50338564 GAACTAGGTTTTACAATCTTTCG
66 GAACTAGGATCTACAATCTTTCG
* *
50338587 CCTATTCCACTGCTGGTGAGGGAACTAGGACTTATAGTCTTCCACCTATTCCACTGCTGGTCAGG
1 CCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGG
* *
50338652 GAACTAGGTTTTACAATCTTTCG
66 GAACTAGGATCTACAATCTTTCG
*
50338675 CCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTAGTCAGG
1 CCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGG
* *
50338740 GAACTAGGTTTTACAATCTTTCG
66 GAACTAGGATCTACAATCTTTCG
50338763 CCTATTCCACTGCTGGTCAGGGAACTAGGACTTA
1 CCTATTCCACTGCTGGTCAGGGAACTAGGACTTA
50338797 TCTTTGATCT
Statistics
Matches: 271, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
87 1 0.00
88 269 0.99
89 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (88 bp):
CCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGG
GAACTAGGATCTACAATCTTTCG
Found at i:50338553 original size:132 final size:131
Alignment explanation
Indices: 50338402--50338796 Score: 486
Period size: 132 Copynumber: 3.0 Consensus size: 131
50338392 TAAGATCTGT
** * ** *
50338402 AATCTTCAACCTATCCCACTGCTGACCAGGGAGA-TAGGACTAGTAGTCTTCCACCTATTCCACT
1 AATCTTCCGCCTATTCCACTGCTGGTCAGGGA-ACTAGGACTA-CAGTCTTCCACCTATTCCACT
* * * *
50338466 ACTGGTCAGGGAACTAGGACTTGCGGTCTTCCGCCCATTCCACTGCTGGTCAGGGAACTAGGACT
64 GCTGGTCAGGGAACTAGGACTTACAGTCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGACT
*
50338531 TGC
129 TAC
** ** * * *
50338534 GGTCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGTTTTACAATCTTTCGCCTATTCCACTG
1 AATCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGG-ACTACAGTCTTCCACCTATTCCACTG
* * * **
50338599 CTGGTGAGGGAACTAGGACTTATAGTCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGTTTT
65 CTGGTCAGGGAACTAGGACTTACAGTCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTT
50338664 AC
130 AC
*
50338666 AATCTTTCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTG
1 AATCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGAC-TACAGTCTTCCACCTATTCCACTG
* ** * *
50338731 CTAGTCAGGGAACTAGGTTTTACAATCTTTCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTT
65 CTGGTCAGGGAACTAGGACTTACAGTCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTT
50338796 A
130 A
50338797 TCTTTGATCT
Statistics
Matches: 219, Mismatches: 41, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
131 1 0.00
132 216 0.99
133 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (131 bp):
AATCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTACAGTCTTCCACCTATTCCACTGC
TGGTCAGGGAACTAGGACTTACAGTCTTCCGCCTATTCCACTGCTGGTCAGGGAACTAGGACTTA
C
Found at i:50340124 original size:15 final size:15
Alignment explanation
Indices: 50340090--50340123 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
50340080 AGCCTCTCTA
*
50340090 TTTTTACTTTTTCAT
1 TTTTTACTTTTTAAT
50340105 TTTTTA-TTTTTAAT
1 TTTTTACTTTTTAAT
50340119 TTTTT
1 TTTTT
50340124 TGACTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTACTTTTTAAT
Found at i:50345404 original size:17 final size:17
Alignment explanation
Indices: 50345382--50345418 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
50345372 ATATTGATGA
*
50345382 TAAGTTTAAAAATATAT
1 TAAGTTTAAAAATAAAT
*
50345399 TAAGTTTAAATATAAAT
1 TAAGTTTAAAAATAAAT
50345416 TAA
1 TAA
50345419 TGTCAGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
TAAGTTTAAAAATAAAT
Found at i:50356624 original size:77 final size:77
Alignment explanation
Indices: 50356538--50356692 Score: 283
Period size: 77 Copynumber: 2.0 Consensus size: 77
50356528 GTAGTTCTAG
*
50356538 CTGATAGGTGACAAGTCTGATGCCTTTTAGAATATAGTACGGTCTAATGAACCTCGGACTCAACT
1 CTGATAGGTGACAAGTCTGATGCCTTTTAGAATATAGTAAGGTCTAATGAACCTCGGACTCAACT
50356603 TACCTTTACGCT
66 TACCTTTACGCT
*
50356615 CTGATAGGTGACAAGTCTGATGCGTTTTAGAATATAGTAAGGTCTAATGAACCTCGGACTCAACT
1 CTGATAGGTGACAAGTCTGATGCCTTTTAGAATATAGTAAGGTCTAATGAACCTCGGACTCAACT
*
50356680 TACCTTTATGCT
66 TACCTTTACGCT
50356692 C
1 C
50356693 AAACCAGAGA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (77 bp):
CTGATAGGTGACAAGTCTGATGCCTTTTAGAATATAGTAAGGTCTAATGAACCTCGGACTCAACT
TACCTTTACGCT
Found at i:50358240 original size:34 final size:35
Alignment explanation
Indices: 50358202--50358271 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
50358192 TACCAGATTC
50358202 AGGCTATA-TAGAATAGGTGGCTGAGTCAAAACGG
1 AGGCTATACTAGAATAGGTGGCTGAGTCAAAACGG
50358236 AGGCTATACTAGAATAGGTGGCTGAGTCAAAACGG
1 AGGCTATACTAGAATAGGTGGCTGAGTCAAAACGG
50358271 A
1 A
50358272 CTTTAGTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 8 0.23
35 27 0.77
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (35 bp):
AGGCTATACTAGAATAGGTGGCTGAGTCAAAACGG
Found at i:50367110 original size:59 final size:60
Alignment explanation
Indices: 50367041--50367157 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 60
50367031 ATCACTTTAA
* * *
50367041 TATTAAATTAATATAATACTTATC-AAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
50367100 TATTAAATTAATAGAATATTTATCTATAAGATAAACATTAAATTAAATTTAATCTTAA
1 TATTAAATTAATAGAATACTTATC--TAAGATAAACATTAAATTAAATTTAATATTAA
50367158 GATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.44
62 28 0.56
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (60 bp):
TATTAAATTAATAGAATACTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:50367150 original size:29 final size:31
Alignment explanation
Indices: 50367117--50367180 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
50367107 TTAATAGAAT
50367117 ATTT-ATCTATAAGATAA-ACATTAA-ATTAA
1 ATTTAATCT-TAAGATAACACATTAATATTAA
*
50367146 ATTTAATCTTAAGATAATCACTTTAATATTAA
1 ATTTAATCTTAAGATAA-CACATTAATATTAA
50367178 ATT
1 ATT
50367181 AATAAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 12 0.40
30 4 0.13
31 6 0.20
32 8 0.27
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (31 bp):
ATTTAATCTTAAGATAACACATTAATATTAA
Found at i:50367241 original size:68 final size:71
Alignment explanation
Indices: 50367100--50367244 Score: 163
Period size: 68 Copynumber: 2.1 Consensus size: 71
50367090 TATTAAATCT
* *
50367100 TATTAAATTAATAGAATATTTATCTATAAGATAAACATTAAATTAAATTTAATCTTAAGATAATC
1 TATTAAATTAATAAAATATTTA-CTATAAGATAAACATTAAATTAAATTTAATATTAAGATAATC
***
50367165 ACTTTAA
65 AAAATAA
** * *
50367172 TATTAAATTAATAAAATA-TTA-T-TAAGATAAGTATTAAATTTAATTTAATATTAAAGAT-ATT
1 TATTAAATTAATAAAATATTTACTATAAGATAAACATTAAATTAAATTTAATATT-AAGATAATC
50367233 AAAATAA
65 AAAATAA
50367240 TATTA
1 TATTA
50367245 TTTTTGGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
68 37 0.59
69 6 0.10
71 3 0.05
72 17 0.27
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (71 bp):
TATTAAATTAATAAAATATTTACTATAAGATAAACATTAAATTAAATTTAATATTAAGATAATCA
AAATAA
Found at i:50370908 original size:11 final size:11
Alignment explanation
Indices: 50370894--50370923 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
50370884 AAAGAAATTA
50370894 TTTTAGAAAAT
1 TTTTAGAAAAT
50370905 TTTTCAGAAAAT
1 TTTT-AGAAAAT
50370917 TTTTAGA
1 TTTTAGA
50370924 GATATTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (11 bp):
TTTTAGAAAAT
Found at i:50376371 original size:40 final size:39
Alignment explanation
Indices: 50376326--50376462 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 39
50376316 ACAAGAGAAT
* *
50376326 GTATGTGCAATCAGGGATACCGAAGTAAAAACAAAGTCA-
1 GTATGTGCATTCAGGG-TACCGAAGTAAAAACAAAGGCAC
* * * **
50376365 GCTATGTGCATTCAAAGGTATCGAAGTAGAAACAGGGGCAC
1 G-TATGTGCATTC-AGGGTACCGAAGTAAAAACAAAGGCAC
* * *
50376406 GTATGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCAT
1 GTATGTGCATTCA-GGGTACCGAAGTAAAAACAAAGGCAC
* *
50376446 GCAAGTGCATTCAGGGT
1 GTATGTGCATTCAGGGT
50376463 CATTTCTTCA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
39 6 0.08
40 70 0.88
41 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (39 bp):
GTATGTGCATTCAGGGTACCGAAGTAAAAACAAAGGCAC
Found at i:50382208 original size:18 final size:18
Alignment explanation
Indices: 50382187--50382226 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
50382177 AAATTGAATC
50382187 AAAACAT-AAAATTTAGGA
1 AAAACATAAAAATTT-GGA
50382205 AAAACATAGAAAATTTGGA
1 AAAACATA-AAAATTTGGA
50382224 AAA
1 AAA
50382227 CAGGGGTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.20
Consensus pattern (18 bp):
AAAACATAAAAATTTGGA
Found at i:50383216 original size:40 final size:40
Alignment explanation
Indices: 50383112--50383276 Score: 163
Period size: 40 Copynumber: 4.2 Consensus size: 40
50383102 AATGTGTGTT
* * * * * *
50383112 AAGGGTATCAAGGTACAAACAAGAGCACATATGTGCAATC
1 AAGGGTACCAAAGTACAAATAGGGGCACATATGTGCATTC
** * *
50383152 -AGGGATACTGAAGTACAAATAGGGGCACTTATGTGCATTT
1 AAGGG-TACCAAAGTACAAATAGGGGCACATATGTGCATTC
* * *
50383192 AAGGGTACCAAAGTTCAAACAGGGGCACGTATGTGCATTC
1 AAGGGTACCAAAGTACAAATAGGGGCACATATGTGCATTC
* * *
50383232 AGGGGTACCAATGTACAAATAGGGGCACATGTGTGCATTC
1 AAGGGTACCAAAGTACAAATAGGGGCACATATGTGCATTC
50383272 -AGGGT
1 AAGGGT
50383277 CATTTTCTTC
Statistics
Matches: 100, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
39 8 0.08
40 88 0.88
41 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (40 bp):
AAGGGTACCAAAGTACAAATAGGGGCACATATGTGCATTC
Found at i:50383225 original size:80 final size:80
Alignment explanation
Indices: 50383110--50383270 Score: 207
Period size: 80 Copynumber: 2.0 Consensus size: 80
50383100 TGAATGTGTG
* * *
50383110 TTAAGGGTATCAAGGTACAAACAAGAGCACATATGTGCAATCAGGGATACTGAA-GTACAAATAG
1 TTAAGGGTACCAAAGTACAAACAAGAGCACATATGTGCAATCAGGGATAC-CAATGTACAAATAG
*
50383174 GGGCACTTATGTGCAT
65 GGGCACATATGTGCAT
* * * * * *
50383190 TTAAGGGTACCAAAGTTCAAACAGGGGCACGTATGTGCATTCAGGGGTACCAATGTACAAATAGG
1 TTAAGGGTACCAAAGTACAAACAAGAGCACATATGTGCAATCAGGGATACCAATGTACAAATAGG
*
50383255 GGCACATGTGTGCAT
66 GGCACATATGTGCAT
50383270 T
1 T
50383271 CAGGGTCATT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
79 2 0.03
80 67 0.97
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (80 bp):
TTAAGGGTACCAAAGTACAAACAAGAGCACATATGTGCAATCAGGGATACCAATGTACAAATAGG
GGCACATATGTGCAT
Found at i:50388177 original size:15 final size:15
Alignment explanation
Indices: 50388159--50388197 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
50388149 AAATTTTAGT
50388159 AAATAAAAAATATAA
1 AAATAAAAAATATAA
** *
50388174 AAATATTAAATATCA
1 AAATAAAAAATATAA
50388189 AAATAAAAA
1 AAATAAAAA
50388198 TAATATAAAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
AAATAAAAAATATAA
Found at i:50397067 original size:103 final size:103
Alignment explanation
Indices: 50396924--50397132 Score: 316
Period size: 103 Copynumber: 2.0 Consensus size: 103
50396914 ACAATTACCC
50396924 GTATCATTGTTTAAATCAAGTATTTAGCATAAGAAGAGTTGTTTTAAGTACATATTAACTTAGTC
1 GTATCATTGTTTAAATCAAGTATTTAGCATAAGAAGAGTTGTTTTAAGTACATATTAACTTAGTC
*
50396989 TTTC-TATCTCTCATTT-CCCTTCGCTTTTGCATGCATT
66 TTTCATATCTCTC-TTTACCCTTCCCTTTTGCATGCATT
* *
50397026 GTATCATTGTTTAAATCAAAGTATTTAGCATAGGGAA-AGTTGTTTTAAGTACATATTAAGTTAG
1 GTATCATTGTTTAAATC-AAGTATTTAGCATA-AGAAGAGTTGTTTTAAGTACATATTAACTTAG
50397090 TCTTTCTATATATCTCTCTTTACCCTTCCCTTTTGCATGCATT
64 TCTTTC---ATATCTCTCTTTACCCTTCCCTTTTGCATGCATT
50397133 TCAACAGATA
Statistics
Matches: 97, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
102 17 0.18
103 46 0.47
104 3 0.03
106 3 0.03
107 28 0.29
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (103 bp):
GTATCATTGTTTAAATCAAGTATTTAGCATAAGAAGAGTTGTTTTAAGTACATATTAACTTAGTC
TTTCATATCTCTCTTTACCCTTCCCTTTTGCATGCATT
Done.