Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 167 of 218
Found at i:50631503 original size:28 final size:28
Alignment explanation
Indices: 50631472--50631528 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
50631462 GATTAATAAG
50631472 TACAAATGAGCAATACCAAACACATGAA
1 TACAAATGAGCAATACCAAACACATGAA
50631500 TACAAATGAGCAATACCAAACACATGAA
1 TACAAATGAGCAATACCAAACACATGAA
50631528 T
1 T
50631529 CCTATGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.53, C:0.21, G:0.11, T:0.16
Consensus pattern (28 bp):
TACAAATGAGCAATACCAAACACATGAA
Found at i:50631809 original size:24 final size:24
Alignment explanation
Indices: 50631768--50631827 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
50631758 CAAGTGAAAA
*
50631768 AATAATAATATAGT-ATAACTTTTA-
1 AATAATAATACA-TAATAAC-TTTAG
*
50631792 AGTAATAATACATAATAACTTTAG
1 AATAATAATACATAATAACTTTAG
50631816 AATAATAATACA
1 AATAATAATACA
50631828 CAATGATTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 5 0.16
24 26 0.84
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (24 bp):
AATAATAATACATAATAACTTTAG
Found at i:50631940 original size:3 final size:3
Alignment explanation
Indices: 50631932--50631981 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
50631922 ATAGTACATA
50631932 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50631980 AA
1 AA
50631982 AATGGTTTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:50632459 original size:12 final size:12
Alignment explanation
Indices: 50632427--50632470 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
50632417 TTTCAAAACG
50632427 AAAAGAAAAA-A
1 AAAAGAAAAATA
*
50632438 AGAA-AAAAATA
1 AAAAGAAAAATA
50632449 AAAAGAAAAATA
1 AAAAGAAAAATA
50632461 AAAAGAAAAA
1 AAAAGAAAAA
50632471 CAGAGAGCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 5 0.17
11 7 0.24
12 17 0.59
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (12 bp):
AAAAGAAAAATA
Found at i:50634738 original size:16 final size:16
Alignment explanation
Indices: 50634701--50634740 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
50634691 TTGATAAAAT
* *
50634701 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
50634717 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
50634733 TAAAATTA
1 TAAAATTA
50634741 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:50634802 original size:66 final size:72
Alignment explanation
Indices: 50634729--50634874 Score: 205
Period size: 66 Copynumber: 2.1 Consensus size: 72
50634719 AAATTAATTG
*
50634729 TTAGTAAAATTATCAAATTATTAATTG-TTAATTG-T-ACTA-ATT-A-TTGTAATAAAATCTAA
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTTGACTATATTAATTTGTAACAAAATCTAA
50634788 CATTTGA
66 CATTTGA
*
50634795 TTAGTAAAATTATCAAATTATTAATTGTATTAATTGTTGATTATATTAATTGTTGTAACAAAATC
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTGTTGACTATATTAA-T-TTGTAACAAAATC
50634860 TAACATTTGA
63 TAACATTTGA
50634870 TTAGT
1 TTAGT
50634875 TTACATTTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 9
0.86 0.03 0.11
Matches are distributed among these distances:
66 27 0.39
68 7 0.10
69 1 0.01
70 3 0.04
71 3 0.04
72 1 0.01
75 27 0.39
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.45
Consensus pattern (72 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTTGACTATATTAATTTGTAACAAAATCTAA
CATTTGA
Found at i:50634920 original size:19 final size:18
Alignment explanation
Indices: 50634879--50634923 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
50634869 ATTAGTTTAC
*
50634879 ATTTTTGTCTTATCAAAT
1 ATTTTTGTATTATCAAAT
50634897 ATTTTTGTATTATCAAAT
1 ATTTTTGTATTATCAAAT
50634915 ATTTTTGTA
1 ATTTTTGTA
50634924 AACAAATAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.58
Consensus pattern (18 bp):
ATTTTTGTATTATCAAAT
Found at i:50634931 original size:16 final size:17
Alignment explanation
Indices: 50634892--50634931 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
50634882 TTTGTCTTAT
*
50634892 CAAATATTTTTGTATTAT
1 CAAATATTTTTGTA-TAA
50634910 CAAATATTTTTGTA-AA
1 CAAATATTTTTGTATAA
50634926 CAAATA
1 CAAATA
50634932 AGTTTACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
18 14 0.67
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.45
Consensus pattern (17 bp):
CAAATATTTTTGTATAA
Found at i:50635109 original size:20 final size:19
Alignment explanation
Indices: 50635043--50635108 Score: 96
Period size: 19 Copynumber: 3.4 Consensus size: 19
50635033 TCTGTCAGGG
*
50635043 AAATGAAATTGAAAACTAA
1 AAATAAAATTGAAAACTAA
50635062 AAATAAAATTGAAAACATAA
1 AAATAAAATTGAAAAC-TAA
*
50635082 AAATAAAATTGAAAACTCA
1 AAATAAAATTGAAAACTAA
*
50635101 AACTAAAA
1 AAATAAAA
50635109 ACTTAAACAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 24 0.56
20 19 0.44
ACGTcount: A:0.67, C:0.08, G:0.06, T:0.20
Consensus pattern (19 bp):
AAATAAAATTGAAAACTAA
Found at i:50635117 original size:39 final size:38
Alignment explanation
Indices: 50635043--50635127 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 38
50635033 TCTGTCAGGG
*
50635043 AAATGAAATTGAAAACTAAAAATAAAATTGAAAACATAA
1 AAATAAAATTGAAAACTAAAAATAAAATT-AAAACATAA
* *
50635082 AAATAAAATTGAAAACTCAAACTAAAAACTT-AAACATAA
1 AAATAAAATTGAAAACTAAAAAT-AAAA-TTAAAACATAA
50635121 AAATAAA
1 AAATAAA
50635128 TATATATATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
39 35 0.85
40 4 0.10
41 2 0.05
ACGTcount: A:0.67, C:0.08, G:0.05, T:0.20
Consensus pattern (38 bp):
AAATAAAATTGAAAACTAAAAATAAAATTAAAACATAA
Found at i:50635296 original size:16 final size:16
Alignment explanation
Indices: 50635275--50635307 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50635265 TATATTTTTT
50635275 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
50635291 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
50635307 A
1 A
50635308 TATATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (16 bp):
AAACATAAAAAACTTA
Found at i:50640251 original size:9 final size:9
Alignment explanation
Indices: 50640215--50640261 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
50640205 TAGATTTTAT
50640215 TTTTTATTA
1 TTTTTATTA
*
50640224 TTTGT-TT-
1 TTTTTATTA
*
50640231 TGTTTA-TA
1 TTTTTATTA
50640239 TTTTTATTA
1 TTTTTATTA
50640248 TTTTTATTA
1 TTTTTATTA
50640257 TTTTT
1 TTTTT
50640262 GTGAGATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
7 4 0.13
8 7 0.23
9 20 0.65
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (9 bp):
TTTTTATTA
Found at i:50640999 original size:21 final size:21
Alignment explanation
Indices: 50640973--50641025 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
50640963 AACAGCGGTG
50640973 GCGGTGAGATTGAGTACTGTA
1 GCGGTGAGATTGAGTACTGTA
*
50640994 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTGAGTACTGTA
50641015 GCGGTGAGATT
1 GCGGTGAGATT
50641026 AGAAACAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.09, G:0.42, T:0.28
Consensus pattern (21 bp):
GCGGTGAGATTGAGTACTGTA
Found at i:50652288 original size:12 final size:12
Alignment explanation
Indices: 50652273--50652307 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
50652263 GGGGTTGGTA
50652273 TTGGTGGAGGTG
1 TTGGTGGAGGTG
* *
50652285 TTGGAGGTGGTG
1 TTGGTGGAGGTG
50652297 TTGGTGGAGGT
1 TTGGTGGAGGT
50652308 ATAGGAATTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.57, T:0.34
Consensus pattern (12 bp):
TTGGTGGAGGTG
Found at i:50652288 original size:24 final size:24
Alignment explanation
Indices: 50652268--50652351 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
50652258 CCCTTGGGGT
50652268 TGGTATTGGTGGAGGTGTTGGAGG
1 TGGTATTGGTGGAGGTGTTGGAGG
* * * **
50652292 TGGTGTTGGTGGAGGTATAGGAAT
1 TGGTATTGGTGGAGGTGTTGGAGG
* * * *
50652316 TGGAATAGGAGGTGGTGTTGGAGG
1 TGGTATTGGTGGAGGTGTTGGAGG
*
50652340 TGGTGTTGGTGG
1 TGGTATTGGTGG
50652352 TGGTATAGGA
Statistics
Matches: 42, Mismatches: 18, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.15, C:0.00, G:0.52, T:0.32
Consensus pattern (24 bp):
TGGTATTGGTGGAGGTGTTGGAGG
Found at i:50652338 original size:12 final size:12
Alignment explanation
Indices: 50652323--50652439 Score: 72
Period size: 12 Copynumber: 9.5 Consensus size: 12
50652313 AATTGGAATA
50652323 GGAGGTGGTGTT
1 GGAGGTGGTGTT
50652335 GGAGGTGGTGTT
1 GGAGGTGGTGTT
* * *
50652347 GGTGGTGGTATA
1 GGAGGTGGTGTT
** **
50652359 GGAATTGGAATT
1 GGAGGTGGTGTT
*
50652371 GGAGGTGGAGGTAT
1 GGAGGTGG-TGT-T
* *
50652385 AGGAGTTGGAGTT
1 -GGAGGTGGTGTT
*
50652398 GGAGGTGGTGGT
1 GGAGGTGGTGTT
* *
50652410 GGTGGTGGTGGT
1 GGAGGTGGTGTT
* *
50652422 GGTGGTGGTGGT
1 GGAGGTGGTGTT
50652434 GGAGGT
1 GGAGGT
50652440 ATAGGAGGTG
Statistics
Matches: 83, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
12 71 0.86
13 2 0.02
14 3 0.04
15 7 0.08
ACGTcount: A:0.14, C:0.00, G:0.56, T:0.30
Consensus pattern (12 bp):
GGAGGTGGTGTT
Found at i:50652346 original size:48 final size:48
Alignment explanation
Indices: 50652281--50652378 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
50652271 TATTGGTGGA
50652281 GGTGTTGGAGGTGGTGTTGGTGGAGGTATAGGAATTGGAATAGGAGGT
1 GGTGTTGGAGGTGGTGTTGGTGGAGGTATAGGAATTGGAATAGGAGGT
* *
50652329 GGTGTTGGAGGTGGTGTTGGTGGTGGTATAGGAATTGGAATTGGAGGT
1 GGTGTTGGAGGTGGTGTTGGTGGAGGTATAGGAATTGGAATAGGAGGT
50652377 GG
1 GG
50652379 AGGTATAGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.18, C:0.00, G:0.51, T:0.31
Consensus pattern (48 bp):
GGTGTTGGAGGTGGTGTTGGTGGAGGTATAGGAATTGGAATAGGAGGT
Found at i:50652379 original size:6 final size:6
Alignment explanation
Indices: 50652370--50652439 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 6
50652360 GAATTGGAAT
* * * * *
50652370 TGGAGG TGGAGG TATAGGAGT TGGAGT TGGAGG TGGTGG TGGTGG TGGTGG
1 TGGAGG TGGAGG --T-GGAGG TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG
* *
50652421 TGGTGG TGGTGG TGGAGG T
1 TGGAGG TGGAGG TGGAGG T
50652440 ATAGGAGGTG
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
6 51 0.89
7 1 0.02
8 1 0.02
9 4 0.07
ACGTcount: A:0.11, C:0.00, G:0.60, T:0.29
Consensus pattern (6 bp):
TGGAGG
Found at i:50652383 original size:27 final size:27
Alignment explanation
Indices: 50652347--50652405 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
50652337 AGGTGGTGTT
*
50652347 GGTGGTGGTATAGGAATTGGAATTGGA
1 GGTGGAGGTATAGGAATTGGAATTGGA
* *
50652374 GGTGGAGGTATAGGAGTTGGAGTTGGA
1 GGTGGAGGTATAGGAATTGGAATTGGA
50652401 GGTGG
1 GGTGG
50652406 TGGTGGTGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.00, G:0.51, T:0.27
Consensus pattern (27 bp):
GGTGGAGGTATAGGAATTGGAATTGGA
Found at i:50652409 original size:3 final size:3
Alignment explanation
Indices: 50652401--50652435 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
50652391 TGGAGTTGGA
50652401 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
50652436 AGGTATAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31
Consensus pattern (3 bp):
GGT
Found at i:50652449 original size:15 final size:14
Alignment explanation
Indices: 50652370--50652451 Score: 51
Period size: 15 Copynumber: 5.7 Consensus size: 14
50652360 GAATTGGAAT
50652370 TGGAGGTGGAGGTA
1 TGGAGGTGGAGGTA
*
50652384 TAGGAGTTGGA-GT-
1 T-GGAGGTGGAGGTA
* *
50652397 TGGAGGTGGTGGTGG
1 TGGAGGTGGAGGT-A
* * *
50652412 TGGTGGTGGTGGTGG
1 TGGAGGTGGAGGT-A
*
50652427 TGGTGGTGGAGGTA
1 TGGAGGTGGAGGTA
50652441 TAGGAGGTGGA
1 T-GGAGGTGGA
50652452 ATTGGTGGAG
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
12 7 0.12
13 3 0.05
14 4 0.07
15 42 0.75
ACGTcount: A:0.15, C:0.00, G:0.59, T:0.27
Consensus pattern (14 bp):
TGGAGGTGGAGGTA
Found at i:50652449 original size:27 final size:27
Alignment explanation
Indices: 50652338--50652450 Score: 66
Period size: 27 Copynumber: 4.1 Consensus size: 27
50652328 TGGTGTTGGA
* * **
50652338 GGTGGTGTTGGTGGTGGTATAGGAATT
1 GGTGGTGGTGGTGGAGGTATAGGAGGT
*** * *
50652365 GGAATTGGAGGTGGAGGTATAGGAGTT
1 GGTGGTGGTGGTGGAGGTATAGGAGGT
* * * *
50652392 GGAGTTGGAGGTGGTGGTGGTGGT-GGTGGT
1 -G-G-TGGTGGTGGTGGAGGT-ATAGGAGGT
50652422 GGTGGTGGTGGTGGAGGTATAGGAGGT
1 GGTGGTGGTGGTGGAGGTATAGGAGGT
50652449 GG
1 GG
50652451 AATTGGTGGA
Statistics
Matches: 61, Mismatches: 20, Indels: 10
0.67 0.22 0.11
Matches are distributed among these distances:
26 1 0.02
27 41 0.67
28 2 0.03
29 2 0.03
30 14 0.23
31 1 0.02
ACGTcount: A:0.15, C:0.00, G:0.56, T:0.29
Consensus pattern (27 bp):
GGTGGTGGTGGTGGAGGTATAGGAGGT
Found at i:50652475 original size:24 final size:24
Alignment explanation
Indices: 50652430--50652475 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
50652420 GTGGTGGTGG
*
50652430 TGGTGGAGGTATAGGAGGTGGAAT
1 TGGTGGAGGCATAGGAGGTGGAAT
*
50652454 TGGTGGAGGCATAGGAGTTGGA
1 TGGTGGAGGCATAGGAGGTGGA
50652476 GGCGGAGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.50, T:0.24
Consensus pattern (24 bp):
TGGTGGAGGCATAGGAGGTGGAAT
Found at i:50665379 original size:8 final size:8
Alignment explanation
Indices: 50665368--50665397 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
50665358 TAAAAATATT
*
50665368 TATATATA
1 TATAAATA
50665376 TATAAATA
1 TATAAATA
50665384 TATAAATA
1 TATAAATA
50665392 TATAAA
1 TATAAA
50665398 AAGTTCAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TATAAATA
Found at i:50666152 original size:22 final size:23
Alignment explanation
Indices: 50666127--50666183 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 23
50666117 AACAAATAAT
50666127 AAATAATAAAATATATGAT-TTGA
1 AAATAATAAAATATATGATATT-A
* *
50666150 AATTAAT-TAAT-TATGATATTA
1 AAATAATAAAATATATGATATTA
*
50666171 AAATAAAAAAATA
1 AAATAATAAAATA
50666184 GATTAAATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
21 12 0.46
22 8 0.31
23 6 0.23
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (23 bp):
AAATAATAAAATATATGATATTA
Found at i:50672375 original size:44 final size:44
Alignment explanation
Indices: 50672308--50672451 Score: 170
Period size: 44 Copynumber: 3.3 Consensus size: 44
50672298 AACGGGACAA
* *
50672308 ATTTCTGACAAGTGTGGGCTTGAACATATCTTGTGTTCCTCAGCC
1 ATTTCTGATAAGTGT-GGATTGAACATATCTTGTGTTCCTCAGCC
*
50672353 ATTT-TGATAAGTGTAGGATTGAACATATCTTGTGTTCCTCA-AC
1 ATTTCTGATAAGTGT-GGATTGAACATATCTTGTGTTCCTCAGCC
* * *
50672396 -TGTTCTGATAAGTGTGGGTGAGAACATATCTTATGTTCCTCAGCC
1 AT-TTCTGATAAGTGTGGAT-TGAACATATCTTGTGTTCCTCAGCC
50672441 -TTTCTGATAAG
1 ATTTCTGATAAG
50672452 ACAAGTTTGT
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
42 1 0.01
43 6 0.07
44 74 0.85
45 6 0.07
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (44 bp):
ATTTCTGATAAGTGTGGATTGAACATATCTTGTGTTCCTCAGCC
Found at i:50673241 original size:20 final size:21
Alignment explanation
Indices: 50673201--50673242 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
50673191 TAATATATGG
50673201 TATCGATACCTTATTAGAAAA
1 TATCGATACCTTATTAGAAAA
50673222 TATCGATA-CTTAGTTA-AAAA
1 TATCGATACCTTA-TTAGAAAA
50673242 T
1 T
50673243 CAATACAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36
Consensus pattern (21 bp):
TATCGATACCTTATTAGAAAA
Found at i:50674531 original size:15 final size:15
Alignment explanation
Indices: 50674524--50674552 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50674514 TTCGCATTCA
50674524 ATCAGTTCACATATC
1 ATCAGTTCACATATC
50674539 ATCAGTTCACATAT
1 ATCAGTTCACATAT
50674553 AACTAACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (15 bp):
ATCAGTTCACATATC
Found at i:50675428 original size:20 final size:19
Alignment explanation
Indices: 50675405--50675446 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
50675395 ATCCTGCCCC
50675405 ATAACCAAATAT-AGACATTA
1 ATAA-CAAATATGAGA-ATTA
*
50675425 ATAACAGATATGAGAATTA
1 ATAACAAATATGAGAATTA
50675444 ATA
1 ATA
50675447 TATCATGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.26
Consensus pattern (19 bp):
ATAACAAATATGAGAATTA
Found at i:50679872 original size:14 final size:14
Alignment explanation
Indices: 50679855--50679884 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
50679845 GCCTTATACA
50679855 AACAATTCGCATAT
1 AACAATTCGCATAT
50679869 AACAATTCGCATAT
1 AACAATTCGCATAT
50679883 AA
1 AA
50679885 ATGGGTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (14 bp):
AACAATTCGCATAT
Found at i:50682472 original size:18 final size:19
Alignment explanation
Indices: 50682449--50682498 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
50682439 AGTTTTTTTT
50682449 AATTATTAAAA-TATAGAA-
1 AATTATTAAAATTATA-AAG
50682467 AATTATTTAAAAATTATAAAG
1 AATTA-TT-AAAATTATAAAG
50682488 AATTATTAAAA
1 AATTATTAAAA
50682499 AATTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
18 5 0.18
19 6 0.21
20 8 0.29
21 9 0.32
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (19 bp):
AATTATTAAAATTATAAAG
Found at i:50682506 original size:11 final size:11
Alignment explanation
Indices: 50682465--50682508 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
50682455 TAAAATATAG
*
50682465 AAAATTATTTA
1 AAAATTATTAA
50682476 AAAATTA-TAA
1 AAAATTATTAA
*
50682486 AGAATTATTAA
1 AAAATTATTAA
50682497 AAAATTATTAA
1 AAAATTATTAA
50682508 A
1 A
50682509 TTTATTAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (11 bp):
AAAATTATTAA
Found at i:50683096 original size:11 final size:11
Alignment explanation
Indices: 50683082--50683140 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
50683072 TTTTTAATGA
50683082 TTTTTATAATT
1 TTTTTATAATT
50683093 TTTTTATAA-T
1 TTTTTATAATT
*
50683103 TTTTAATAATT
1 TTTTTATAATT
**
50683114 TTTAAATAA-T
1 TTTTTATAATT
*
50683124 TTTCTATAATT
1 TTTTTATAATT
*
50683135 ATTTTA
1 TTTTTA
50683141 AAAAATCACG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
10 17 0.43
11 23 0.57
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:50683098 original size:21 final size:21
Alignment explanation
Indices: 50683072--50683141 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 21
50683062 CATTTAATAA
*
50683072 TTTTTAATGATTTTTATAATT
1 TTTTTAATAATTTTTATAATT
50683093 TTTTT-ATAATTTTTAATAA-T
1 TTTTTAATAATTTTT-ATAATT
*
50683113 TTTTAAATAATTTTCTATAATT
1 TTTTTAATAATTTT-TATAATT
*
50683135 ATTTTAA
1 TTTTTAA
50683142 AAAATCACGT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 13 0.32
21 21 0.51
22 7 0.17
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (21 bp):
TTTTTAATAATTTTTATAATT
Found at i:50683134 original size:10 final size:10
Alignment explanation
Indices: 50683064--50683126 Score: 83
Period size: 10 Copynumber: 6.2 Consensus size: 10
50683054 GGACGTTGCA
50683064 TTTAATAATT
1 TTTAATAATT
*
50683074 TTTAATGATT
1 TTTAATAATT
50683084 TTT-ATAATTT
1 TTTAATAA-TT
*
50683094 TTTTATAATT
1 TTTAATAATT
50683104 TTTAATAATT
1 TTTAATAATT
50683114 TTTAAATAATT
1 TTT-AATAATT
50683125 TT
1 TT
50683127 CTATAATTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
9 3 0.06
10 31 0.66
11 13 0.28
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTAATAATT
Found at i:50684229 original size:16 final size:17
Alignment explanation
Indices: 50684208--50684240 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50684198 TATGTTGATC
50684208 AGAAACA-TATATTATA
1 AGAAACAGTATATTATA
*
50684224 AGAAACAGTCTATTATA
1 AGAAACAGTATATTATA
50684241 CCTGATATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (17 bp):
AGAAACAGTATATTATA
Found at i:50693264 original size:36 final size:36
Alignment explanation
Indices: 50693223--50693413 Score: 240
Period size: 36 Copynumber: 5.0 Consensus size: 36
50693213 GGTAGCTTTA
50693223 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
50693259 GCTACACTTATCTGATCAAGAGACAAAA-TGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGA-AAAAGTGAT-A-----AG---T
50693304 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
50693341 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
50693377 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
50693413 G
1 G
50693414 GTAGCTTAGC
Statistics
Matches: 139, Mismatches: 4, Indels: 24
0.83 0.02 0.14
Matches are distributed among these distances:
36 97 0.70
37 6 0.04
40 2 0.01
42 2 0.01
45 6 0.04
46 26 0.19
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:50693324 original size:82 final size:81
Alignment explanation
Indices: 50693187--50693377 Score: 328
Period size: 82 Copynumber: 2.3 Consensus size: 81
50693177 TTTGAGTACT
*
50693187 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGA-AAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
50693252 GATAAGTGCTACACTTA
65 GATAAGTGCTACACTTA
50693269 TCTGATCAAGAGACAAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGA-AAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
50693334 GATAAGTGCTATACTTA
65 GATAAGTGCTACACTTA
*
50693351 TCTGATCAAGTGAAAAAGTGATAAGTG
1 TCTGATCAAGAGAAAAA-TGATAAGTG
50693378 CTATACTTAT
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
81 4 0.04
82 100 0.96
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.29
Consensus pattern (81 bp):
TCTGATCAAGAGAAAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTG
ATAAGTGCTACACTTA
Found at i:50693361 original size:21 final size:20
Alignment explanation
Indices: 50693333--50693398 Score: 52
Period size: 21 Copynumber: 3.5 Consensus size: 20
50693323 AGTGAAAAAG
50693333 TGATAAGTGCTATACTTATC
1 TGATAAGTGCTATACTTATC
* **
50693353 TGATCAAGTG--A-A--AAAG
1 TGAT-AAGTGCTATACTTATC
50693369 TGATAAGTGCTATACTTATC
1 TGATAAGTGCTATACTTATC
50693389 TGATCAAGTG
1 TGAT-AAGTG
50693399 ACAAAGTGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 13
0.63 0.12 0.25
Matches are distributed among these distances:
15 5 0.15
16 5 0.15
17 1 0.03
18 2 0.06
19 1 0.03
20 9 0.27
21 10 0.30
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
TGATAAGTGCTATACTTATC
Found at i:50700637 original size:36 final size:36
Alignment explanation
Indices: 50700596--50700786 Score: 229
Period size: 36 Copynumber: 5.0 Consensus size: 36
50700586 GGTAGCTTTA
50700596 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* * *
50700632 GCTACACTTATATGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
50700677 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
50700714 GCTATACTTATTTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
50700750 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
50700786 G
1 G
50700787 GTAGCTTAGC
Statistics
Matches: 135, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
36 98 0.73
37 2 0.01
40 2 0.01
42 2 0.01
45 2 0.01
46 29 0.21
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:50700699 original size:82 final size:82
Alignment explanation
Indices: 50700562--50700750 Score: 333
Period size: 82 Copynumber: 2.3 Consensus size: 82
50700552 TGAGTACTTC
*
50700562 TGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
1 TGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
50700627 TAAGTGCTACACTTATA
66 TAAGTGCTACACTTATA
*
50700644 TGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
1 TGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
* *
50700709 TAAGTGCTATACTTATT
66 TAAGTGCTACACTTATA
*
50700726 TGATCAAGTGAAAAAGTGATAAGTG
1 TGATCAAGAGAAAAAGTGATAAGTG
50700751 CTATACTTAT
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 102 1.00
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (82 bp):
TGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
TAAGTGCTACACTTATA
Found at i:50707174 original size:7 final size:7
Alignment explanation
Indices: 50707150--50707197 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
50707140 TTGAGTCGTA
50707150 AAAAATG
1 AAAAATG
*
50707157 ATAATATG
1 A-AAAATG
50707165 AAAAATG
1 AAAAATG
50707172 AAAAAGTG
1 AAAAA-TG
50707180 -AAAATG
1 AAAAATG
*
50707186 AAAACTG
1 AAAAATG
50707193 AAAAA
1 AAAAA
50707198 ATGGAAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 2 0.06
7 24 0.71
8 8 0.24
ACGTcount: A:0.67, C:0.02, G:0.15, T:0.17
Consensus pattern (7 bp):
AAAAATG
Found at i:50707181 original size:15 final size:15
Alignment explanation
Indices: 50707150--50707211 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
50707140 TTGAGTCGTA
*
50707150 AAAAATGATAATA-TG
1 AAAAATGA-AAAAGTG
50707165 AAAAATGAAAAAGTG
1 AAAAATGAAAAAGTG
*
50707180 -AAAATG-AAAACTG
1 AAAAATGAAAAAGTG
*
50707193 AAAAAATGGAAAAGT-
1 -AAAAATGAAAAAGTG
50707208 AAAA
1 AAAA
50707212 CGGAGAGGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
13 6 0.15
14 13 0.32
15 16 0.40
16 5 0.12
ACGTcount: A:0.66, C:0.02, G:0.16, T:0.16
Consensus pattern (15 bp):
AAAAATGAAAAAGTG
Found at i:50707212 original size:22 final size:21
Alignment explanation
Indices: 50707149--50707205 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
50707139 TTTGAGTCGT
*
50707149 AAAAAATGATAATATGAAAAATG
1 AAAAAATGA-AA-ATGAAAACTG
*
50707172 AAAAAGTGAAAATGAAAACTG
1 AAAAAATGAAAATGAAAACTG
50707193 AAAAAATGGAAAA
1 AAAAAAT-GAAAA
50707206 GTAAAACGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.50
22 7 0.23
23 8 0.27
ACGTcount: A:0.67, C:0.02, G:0.16, T:0.16
Consensus pattern (21 bp):
AAAAAATGAAAATGAAAACTG
Found at i:50708781 original size:44 final size:44
Alignment explanation
Indices: 50708727--50709052 Score: 193
Period size: 44 Copynumber: 7.4 Consensus size: 44
50708717 TATCTCTTTG
* *
50708727 GGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTA
1 GGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCTA
* * ** * ** *
50708771 GGCAGTAGTGGAGTAGATCGAAGA-TAGTGGATTTTGCCTCCTTGA
1 GGCAGCAGTGGAGTAGATTGAAGATTA-CAGATCTTATCTCCCT-A
* * * * **
50708816 GGTTA-CAGTGGAGTATATTGAAGCCAGTA-A-TTC-TATCTCCCCG
1 GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATCTTATCTCCCTA
* *
50708859 GGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTA
1 GGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCTA
* * * *** * * *
50708903 GACAGTAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCTCTGA
1 GGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCT-A
* * * * *
50708948 GGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-TATCTCCCTG
1 GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATCTTATCTCCCTA
* *
50708991 GGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
1 GGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCTA
*
50709035 GGCAGTAGTGGAGTAGAT
1 GGCAGCAGTGGAGTAGAT
50709053 CGAAAATGGC
Statistics
Matches: 201, Mismatches: 63, Indels: 36
0.67 0.21 0.12
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 41 0.20
44 106 0.53
45 37 0.18
46 3 0.01
47 2 0.01
48 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (44 bp):
GGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCTA
Found at i:50709120 original size:44 final size:44
Alignment explanation
Indices: 50708808--50709122 Score: 127
Period size: 44 Copynumber: 7.2 Consensus size: 44
50708798 TGGATTTTGC
* * *
50708808 CTCCTTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTAT
1 CTCCCTGAGGTTACAGTGGAATAGATTGAAGCCAGTAATTCTAT
* * * * *
50708852 CTCCCCG-GG-CAGCAGTGGAATAGATTGAA--TATTACAGATCTTAT
1 CTCCCTGAGGTTA-CAGTGGAATAGATTGAAGCCAGTA-A-TTC-TAT
* * * *** * *
50708896 CTCCCTAGACAG-T--AGTGGAGTAGATCGAAGATGGTAGATTTTAC
1 CTCCCT-GA-GGTTACAGTGGAATAGATTGAAGCCAGTA-ATTCTAT
* * *
50708940 CTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
1 CTCCCTGAGGTTACAGTGGAATAGATTGAAGCCAGTAATTCTAT
** * *
50708984 CTCCCTG-GGCAACAGTGGAATAGATTGAAG--ATTACAGATCTTAT
1 CTCCCTGAGGTTACAGTGGAATAGATTGAAGCCAGTA-A-TTC-TAT
* * * * * * *
50709028 CTCCCT-AGG-CAGTAGTGGAGTAGATCGAAAATGGCAG--ATTTTAC
1 CTCCCTGAGGTTA-CAGTGGAATAGATTG--AA-GCCAGTAATTCTAT
*
50709072 CTCCCTGAGGTTACAGTGGAATATATTGAAGCCAGTAATTCTAT
1 CTCCCTGAGGTTACAGTGGAATAGATTGAAGCCAGTAATTCTAT
50709116 CTCCCTG
1 CTCCCTG
50709123 GTCGGCAGTG
Statistics
Matches: 194, Mismatches: 51, Indels: 52
0.65 0.17 0.18
Matches are distributed among these distances:
41 6 0.03
42 8 0.04
43 46 0.24
44 88 0.45
45 35 0.18
46 8 0.04
47 2 0.01
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
CTCCCTGAGGTTACAGTGGAATAGATTGAAGCCAGTAATTCTAT
Found at i:50709157 original size:132 final size:132
Alignment explanation
Indices: 50708398--50709146 Score: 1104
Period size: 132 Copynumber: 5.7 Consensus size: 132
50708388 GAGCGAGTTG
* *
50708398 ATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCCCCCTG
1 ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
* * * *
50708463 GGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC-A
66 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
50708527 AA
131 AA
* * *
50708529 TATTGTGGATTTTACCTCCCTGATGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 -ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
* * * * * * * *
50708594 GAGCAGTAGTGGAATAGATTGAAGATTACAGACCTTATATCCCTATGTAGTAGTGGAGCAGATCA
65 GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCG
50708659 AAA
130 AAA
* * * **
50708662 ATGGTGGATTTTACCTCCCAGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCTTTG
1 ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
*
50708727 GGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
66 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
*
50708792 AG
131 AA
* * * * * *
50708794 ATAGTGGATTTTGCCTCCTTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCCG
1 ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
* *
50708859 GGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGA
66 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
*
50708924 AG
131 AA
*
50708926 ATGGTAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
1 ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
*
50708991 GGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
66 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
50709056 AA
131 AA
* * *
50709058 ATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAATATATTGAAGCCAGTAATTCTATCTCCCTG
1 ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
* * * *
50709123 GTCGGCAGTGGAATCGATCGAAGA
66 GGCAGCAGTGGAATAGATTGAAGA
50709147 AAGCAGATCT
Statistics
Matches: 559, Mismatches: 57, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
132 556 0.99
133 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
ATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG
GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGA
AA
Found at i:50709201 original size:44 final size:44
Alignment explanation
Indices: 50709138--50709278 Score: 185
Period size: 44 Copynumber: 3.2 Consensus size: 44
50709128 CAGTGGAATC
*
50709138 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTA
1 GATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTA
*
50709182 GATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGTATGAAGTA
1 GATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTA
* *** * *
50709226 GATC-AAAGAGAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTA
1 GATCGAAGGA-AGCAGATCTTGTCTTCATGTATTGGT-GTGAAGTA
50709271 GATCGAAG
1 GATCGAAG
50709279 ATACAAGTCT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 4 0.05
44 68 0.81
45 10 0.12
46 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (44 bp):
GATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTA
Found at i:50709352 original size:44 final size:44
Alignment explanation
Indices: 50709297--50709442 Score: 147
Period size: 44 Copynumber: 3.4 Consensus size: 44
50709287 CTTATCTCCC
*
50709297 TGAAGTAGCAGTGGAGCAGACAGAAGTAACCAATCCTATCTCTT
1 TGAAGTTGCAGTGGAGCAGACAGAAGTAACCAATCCTATCTCTT
* * * * * *
50709341 TGAAGTTGCAGTTGAGCAGATC----GTATCCAGTCTTATCCCTC
1 TGAAGTTGCAGTGGAGCAGA-CAGAAGTAACCAATCCTATCTCTT
* * * * *
50709382 TGAAGTTGCAGAGGAGCAGACAGAAGAAATCGATCCTATCTCCT
1 TGAAGTTGCAGTGGAGCAGACAGAAGTAACCAATCCTATCTCTT
50709426 TGAAGTTGCAGTGGAGC
1 TGAAGTTGCAGTGGAGC
50709443 GGATTAAAAT
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
40 1 0.01
41 32 0.41
44 44 0.56
45 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAGACAGAAGTAACCAATCCTATCTCTT
Found at i:50709429 original size:85 final size:85
Alignment explanation
Indices: 50709284--50709442 Score: 239
Period size: 85 Copynumber: 1.9 Consensus size: 85
50709274 CGAAGATACA
* * *
50709284 AGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACAGAAGTAACCAATCCTATCTCTTTGAAGTTG
1 AGTCTTATCTCCCTGAAGTAGCAGAGGAGCAGACAGAAGAAACCAATCCTATCTCCTTGAAGTTG
*
50709349 CAGTTGAGCAGATCGTATCC
66 CAGTGGAGCAGATCGTATCC
* * *
50709369 AGTCTTATC-CCTCTGAAGTTGCAGAGGAGCAGACAGAAGAAATCGATCCTATCTCCTTGAAGTT
1 AGTCTTATCTCC-CTGAAGTAGCAGAGGAGCAGACAGAAGAAACCAATCCTATCTCCTTGAAGTT
50709433 GCAGTGGAGC
65 GCAGTGGAGC
50709443 GGATTAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
84 2 0.03
85 64 0.97
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (85 bp):
AGTCTTATCTCCCTGAAGTAGCAGAGGAGCAGACAGAAGAAACCAATCCTATCTCCTTGAAGTTG
CAGTGGAGCAGATCGTATCC
Found at i:50713105 original size:21 final size:21
Alignment explanation
Indices: 50713081--50713129 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
50713071 TTTAACATTA
50713081 AGTATCAATACCTTGAATAAG
1 AGTATCAATACCTTGAATAAG
50713102 AGTATCAATACCTTGAATAAG
1 AGTATCAATACCTTGAATAAG
50713123 AGTATCA
1 AGTATCA
50713130 GTACTTAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (21 bp):
AGTATCAATACCTTGAATAAG
Found at i:50724485 original size:33 final size:36
Alignment explanation
Indices: 50724408--50724483 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 36
50724398 TCTGTAAGAA
* *
50724408 ATTATTAATAATATTTTTAAATTATAATATATTAAT
1 ATTATTAATAATAGTTTTAAACTATAATATATTAAT
*
50724444 ATTATTAATAATAGTTTTAAACTATAATGTATTAAT
1 ATTATTAATAATAGTTTTAAACTATAATATATTAAT
50724480 ATTA
1 ATTA
50724484 ATATTTATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (36 bp):
ATTATTAATAATAGTTTTAAACTATAATATATTAAT
Found at i:50738106 original size:105 final size:105
Alignment explanation
Indices: 50737934--50738607 Score: 699
Period size: 105 Copynumber: 6.4 Consensus size: 105
50737924 GTCAGTTAAT
* * * * * * * *
50737934 TGTTTAAGAATTGCGATCTTGAATCAGTTAACTCAAAGAAATTTAGGTTGCGATCTTAAATAAAC
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
* * *
50737999 TAACCTTTATAATTCCAACTGTGAACGTAGGTCAGGGACC
66 TAACCTTTATAATTCCAACTGTGAACATAGGTCAGTGAGC
* * *
50738039 TGTTTAGGAGTTGCAATATTAAATCAGCTAACTCAAAGAAATTTAGGTTATGATCTTAAATCAAC
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
* * *
50738104 TAACCTTTATAATTCCAACTGTGAATATAGGTTAGTGAGT
66 TAACCTTTATAATTCCAACTGTGAACATAGGTCAGTGAGC
* * * * *
50738144 TGTTTAAGAGTTGCGATATTAAATCAGCTAACTTAACGAAATTTAGGTTGTGATATTAAATTAGC
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
** * * * *
50738209 TAACCTTTATAATTCCAGTTGTGAACACATGTTAGCGAGC
66 TAACCTTTATAATTCCAACTGTGAACATAGGTCAGTGAGC
* * * * * * *
50738249 TGTTTAAGAGTTGCGATCTTAAACCAGCTAACTCAAAGAAAATTGGGTTGCGATATTAAATCAGC
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
* * * * ** ** *
50738314 TAACTTTTATAATTTC-AGTGGTGAACGTAGGTTTGCAATC
66 TAACCTTTATAATTCCAACT-GTGAACATAGGTCAGTGAGC
* * * * * * *
50738354 TGTTTAGGAGTTGTGATATTAAATTAGCTAACTCAAAGAAATTTAGGCTATGATCTTAAATGAAT
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
* *
50738419 TAACCTTTATAATTCCAACTGTAAATATAGGTCAGTGAGC
66 TAACCTTTATAATTCCAACTGTGAACATAGGTCAGTGAGC
* * * * * *
50738459 TATTTAGGAGTTGTGATCTTAAATCAACTAACTC--AGAAACTTAGGTTGTGATATTAAATCAGC
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
* ** *
50738522 TAACCTTTATAATTCTAGTTGTG-ACTGTAGGTCAGTGAGC
66 TAACCTTTATAATTCCAACTGTGAAC-ATAGGTCAGTGAGC
* ** *
50738562 TGTTTAGAAGTTATGATCTTAAATCAGCTAACTCAAAGAAATTTAG
1 TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAG
50738608 ACATGAAAAT
Statistics
Matches: 469, Mismatches: 95, Indels: 10
0.82 0.17 0.02
Matches are distributed among these distances:
102 1 0.00
103 84 0.18
104 1 0.00
105 381 0.81
106 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (105 bp):
TGTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAGAAATTTAGGTTGTGATATTAAATCAAC
TAACCTTTATAATTCCAACTGTGAACATAGGTCAGTGAGC
Found at i:50747091 original size:44 final size:44
Alignment explanation
Indices: 50747035--50747389 Score: 198
Period size: 44 Copynumber: 7.6 Consensus size: 44
50747025 TTTAATCCGA
* *
50747035 TCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAACCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGC
** * * *
50747079 TCTGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGACGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCT---GC
* * * * * * *
50747126 GATCTACTCTACTATAACTTCAGAGAGATAAGA-TCCTTTGTTTTAATCC-GC
1 --TCCACTGTA--AT--C-TCAGGGAGATAAGATTAC-TAGCTTCAA-CCTGC
* *
50747177 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGC
* * * *
50747221 TCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGACGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCT---GC
* * * * * *
50747268 GATCTACTTTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTGTTTTAA-TTCGC
1 --TC--C---ACTGTAATC-TCAGGGAGATAAGATTAC-TAGCTTCAACCT-GC
* *
50747319 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGC
50747363 TCCACTGTAATCTCAGGGAGATAAGAT
1 TCCACTGTAATCTCAGGGAGATAAGAT
50747390 CTATAATTCC
Statistics
Matches: 239, Mismatches: 43, Indels: 58
0.70 0.13 0.17
Matches are distributed among these distances:
43 1 0.00
44 146 0.61
45 7 0.03
47 7 0.03
49 18 0.08
51 8 0.03
53 7 0.03
54 44 0.18
55 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAACCTGC
Found at i:50747189 original size:142 final size:142
Alignment explanation
Indices: 50746895--50747389 Score: 796
Period size: 142 Copynumber: 3.5 Consensus size: 142
50746885 GGCGCTTCTA
* * *
50746895 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTTCGCTGTAATCTCAGAGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * * ** * *
50746960 TAAGA--CCTGACCTCAATCTGATGCGATCTACTCTGTTGTAACTTTAGAGAGATAAGATCTTTT
66 TAAGATTTCTGGCTTCAATCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
* *
50747023 ATTTTAATCCGA
131 GTTTTAATCCGC
* * *
50747035 TCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAACCTGCTCTGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
*
50747100 TAAGATTTCTGGCTTCAATCTGACGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
50747165 GTTTTAATCCGC
131 GTTTTAATCCGC
50747177 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
*
50747242 TAAGATTTCTGGCTTCAATCTGACGCGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
*
50747307 GTTTTAATTCGC
131 GTTTTAATCCGC
*
50747319 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
50747384 TAAGAT
66 TAAGAT
50747390 CTATAATTCC
Statistics
Matches: 329, Mismatches: 24, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
140 64 0.19
142 265 0.81
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (142 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATTTCTGGCTTCAATCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
GTTTTAATCCGC
Found at i:50747296 original size:98 final size:98
Alignment explanation
Indices: 50747180--50747361 Score: 226
Period size: 98 Copynumber: 1.9 Consensus size: 98
50747170 AATCCGCTCC
* * *
50747180 ACTGTAATCTCAGGGAGATAGGATTAC-TAGCTTCAA-TCTGCTCCGCTGTAATCTCAGGGAGAT
1 ACTGTAATCTCAGAGAGATAAGA-TACTTAGCTTCAATTC-GCTCCACTGTAATCTCAGGGAGAT
* *
50747243 AAGATTTCTGGCTTCAATCTGACGCGATCTACTTT
64 AAGATTACTAGCTTCAATCTGACGCGATCTACTTT
* * * *
50747278 ACTGTAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATTCGCTCCACTGTAATCTCAGGGAGATA
1 ACTGTAATC-TCAGAGAGATAAGATACTTAGCTTCAATTCGCTCCACTGTAATCTCAGGGAGATA
*
50747342 GGATTACTAGCTTCAATCTG
65 AGATTACTAGCTTCAATCTG
50747362 CTCCACTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
97 3 0.04
98 66 0.93
99 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (98 bp):
ACTGTAATCTCAGAGAGATAAGATACTTAGCTTCAATTCGCTCCACTGTAATCTCAGGGAGATAA
GATTACTAGCTTCAATCTGACGCGATCTACTTT
Found at i:50766660 original size:20 final size:20
Alignment explanation
Indices: 50766614--50766652 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50766604 TTAGTGCCTT
50766614 GTTTGTACTTCAGTACCCCA
1 GTTTGTACTTCAGTACCCCA
* *
50766634 GCTTGTACTTCGGTACCCC
1 GTTTGTACTTCAGTACCCC
50766653 TATTTGTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.33, G:0.18, T:0.33
Consensus pattern (20 bp):
GTTTGTACTTCAGTACCCCA
Found at i:50767986 original size:25 final size:25
Alignment explanation
Indices: 50767956--50768049 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 25
50767946 GTCCCGACCC
*
50767956 ACAGCTCGTATGAGCATACTGATTT
1 ACAGCTCATATGAGCATACTGATTT
* *
50767981 ATAGCTCATGA-GAGCATAATGATCTT
1 ACAGCTCAT-ATGAGCATACTGAT-TT
* * * *
50768007 -CAGCTCGA-GTGAGCATACCGGTTC
1 ACAGCTC-ATATGAGCATACTGATTT
50768031 ACAGCTCATATGAGCATAC
1 ACAGCTCATATGAGCATAC
50768050 ATGTACATAA
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
24 2 0.04
25 47 0.89
26 4 0.08
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (25 bp):
ACAGCTCATATGAGCATACTGATTT
Found at i:50774452 original size:25 final size:25
Alignment explanation
Indices: 50774426--50774512 Score: 72
Period size: 25 Copynumber: 3.5 Consensus size: 25
50774416 CTCGACCCAT
*
50774426 AGCTCGTATGAGCATATCGATTTAT
1 AGCTCGTATGAGCATATCGATTTAC
* *
50774451 AGCTCATGA-GAGCATATCGGTCTT-C
1 AGCTCGT-ATGAGCATATCGAT-TTAC
* *
50774476 AGCTCG-AGTGAGCATACCGATTCAC
1 AGCTCGTA-TGAGCATATCGATTTAC
*
50774501 AGCTTGTATGAG
1 AGCTCGTATGAG
50774513 TATACATGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 42 0.88
26 4 0.08
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AGCTCGTATGAGCATATCGATTTAC
Found at i:50776193 original size:20 final size:20
Alignment explanation
Indices: 50776153--50776232 Score: 115
Period size: 20 Copynumber: 4.0 Consensus size: 20
50776143 TGTTACACTG
*
50776153 TTTGTACTTCGGTACCCCCTA
1 TTTGTACTTCGATA-CCCCTA
*
50776174 TTTGTCCTTCGATACCCCTA
1 TTTGTACTTCGATACCCCTA
* *
50776194 ATTGTACTTCGGTACCCCTA
1 TTTGTACTTCGATACCCCTA
50776214 TTTGTACTTCGATACCCCT
1 TTTGTACTTCGATACCCCT
50776233 GTTTACACAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
20 40 0.77
21 12 0.23
ACGTcount: A:0.16, C:0.33, G:0.12, T:0.39
Consensus pattern (20 bp):
TTTGTACTTCGATACCCCTA
Found at i:50776224 original size:40 final size:41
Alignment explanation
Indices: 50776154--50776232 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 41
50776144 GTTACACTGT
*
50776154 TTGTACTTCGGTACCCCCTATTTGTCCTTCGATACCCCTAA
1 TTGTACTTCGGTACCCCCTATTTGTACTTCGATACCCCTAA
50776195 TTGTACTTCGGTA-CCCCTATTTGTACTTCGATACCCCT
1 TTGTACTTCGGTACCCCCTATTTGTACTTCGATACCCCT
50776233 GTTTACACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 24 0.65
41 13 0.35
ACGTcount: A:0.16, C:0.33, G:0.13, T:0.38
Consensus pattern (41 bp):
TTGTACTTCGGTACCCCCTATTTGTACTTCGATACCCCTAA
Found at i:50789164 original size:29 final size:29
Alignment explanation
Indices: 50789127--50789195 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
50789117 TCAGAGTCTC
* *
50789127 ACCACAAAGGCATTCTTTTAGTAAAGATA
1 ACCACAAAGGCATCCTTTTAATAAAGATA
* * *
50789156 ACCATAAAGGTATCCTTTTAATAGAGATA
1 ACCACAAAGGCATCCTTTTAATAAAGATA
*
50789185 GCCACAAAGGC
1 ACCACAAAGGC
50789196 TCTATTTAAC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (29 bp):
ACCACAAAGGCATCCTTTTAATAAAGATA
Found at i:50789231 original size:28 final size:28
Alignment explanation
Indices: 50789157--50789309 Score: 130
Period size: 28 Copynumber: 5.4 Consensus size: 28
50789147 GTAAAGATAA
* *
50789157 CCATAAAGG-TATCCTTTTAATAGAGATAG
1 CCATAAAGGCT-TCC-TTTAACAGAAATAG
* * **
50789186 CCACAAAGGC-TCTATTTAACAGAGTTAG
1 CCATAAAGGCTTC-CTTTAACAGAAATAG
* *
50789214 CCATAAATGCTTCCTTTAACAGAAATCG
1 CCATAAAGGCTTCCTTTAACAGAAATAG
** * *
50789242 TTATAAAGGCTTTCTTTTAACAGAAACAG
1 CCATAAAGGC-TTCCTTTAACAGAAATAG
**
50789271 CCATAAAGGCTTCCTTTAACAGGGATAG
1 CCATAAAGGCTTCCTTTAACAGAAATAG
50789299 CCATAAAGGCT
1 CCATAAAGGCT
50789310 CACTTTTAGG
Statistics
Matches: 98, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
28 65 0.66
29 33 0.34
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (28 bp):
CCATAAAGGCTTCCTTTAACAGAAATAG
Found at i:50789317 original size:57 final size:55
Alignment explanation
Indices: 50789157--50789310 Score: 157
Period size: 57 Copynumber: 2.7 Consensus size: 55
50789147 GTAAAGATAA
* * ***
50789157 CCATAAAGG-TATCCTTTTAATAGAGATAGCCACAAAGGCTCTATTTAACAGAGTTAG
1 CCATAAAGGCT-TCC-TTTAACAGAGATAGCCATAAAGGCTCT-TTTAACAGAAACAG
* * * **
50789214 CCATAAATGCTTCCTTTAACAGAAATCGTTATAAAGGCTTTCTTTTAACAGAAACAG
1 CCATAAAGGCTTCCTTTAACAGAGATAGCCATAAAGGC--TCTTTTAACAGAAACAG
*
50789271 CCATAAAGGCTTCCTTTAACAGGGATAGCCATAAAGGCTC
1 CCATAAAGGCTTCCTTTAACAGAGATAGCCATAAAGGCTC
50789311 ACTTTTAGGG
Statistics
Matches: 78, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
55 2 0.03
56 18 0.23
57 54 0.69
58 4 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (55 bp):
CCATAAAGGCTTCCTTTAACAGAGATAGCCATAAAGGCTCTTTTAACAGAAACAG
Found at i:50794873 original size:24 final size:25
Alignment explanation
Indices: 50794819--50794878 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 25
50794809 ATAAGCCCTC
*
50794819 TCAG-GCTTCCCATTATAGTGCTCT
1 TCAGAGCTTCCCATTATAATGCTCT
*
50794843 TGC-GAGCTTCCCTTTA-AATGCTCT
1 T-CAGAGCTTCCCATTATAATGCTCT
*
50794867 TCAGAGCATCCC
1 TCAGAGCTTCCC
50794879 GACTGGTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.03
24 18 0.60
25 11 0.37
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (25 bp):
TCAGAGCTTCCCATTATAATGCTCT
Found at i:50810390 original size:4 final size:4
Alignment explanation
Indices: 50810383--50810424 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
50810373 TGCATGCATG
50810383 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CA
50810425 GTTTTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:50814714 original size:24 final size:24
Alignment explanation
Indices: 50814685--50814737 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
50814675 ATTAGTAAGT
* * *
50814685 TAAATAAACTATGCTAGTAAATGC
1 TAAATAAACTATACTAATAAATAC
* *
50814709 TAAATATATTATACTAATAAATAC
1 TAAATAAACTATACTAATAAATAC
50814733 TAAAT
1 TAAAT
50814738 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (24 bp):
TAAATAAACTATACTAATAAATAC
Found at i:50814928 original size:27 final size:27
Alignment explanation
Indices: 50814890--50814942 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
50814880 ACTTTATATA
*
50814890 ATATATATATATATAACAGTTTGTGCT
1 ATATATAAATATATAACAGTTTGTGCT
50814917 ATATATAAATATATAACAGTTTGTGC
1 ATATATAAATATATAACAGTTTGTGC
50814943 AGGTTTGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (27 bp):
ATATATAAATATATAACAGTTTGTGCT
Found at i:50818166 original size:18 final size:18
Alignment explanation
Indices: 50818127--50818168 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
50818117 ATTCCAAATT
*
50818127 TTTTATAATTATTAAGTA
1 TTTTATAATTATTAAGGA
*
50818145 TTTTA-AATTATTTAGGA
1 TTTTATAATTATTAAGGA
50818162 GTTTTAT
1 -TTTTAT
50818169 GTTAACAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
TTTTATAATTATTAAGGA
Found at i:50818620 original size:18 final size:18
Alignment explanation
Indices: 50818581--50818621 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
50818571 TTAATCTTTG
*
50818581 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTGT
50818598 ATTTATTTATTTTAATTGT
1 ATTTATTTATTTT-ATTGT
50818617 -TTTAT
1 ATTTAT
50818622 CTGACTTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 5 0.24
18 12 0.57
19 4 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTATTTATTTTATTGT
Found at i:50824866 original size:18 final size:18
Alignment explanation
Indices: 50824827--50824867 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
50824817 TTAATCTTTG
*
50824827 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTGT
50824844 ATTTATTTATTTTAATTGT
1 ATTTATTTATTTT-ATTGT
50824863 -TTTAT
1 ATTTAT
50824868 CTGACTTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 5 0.24
18 12 0.57
19 4 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTATTTATTTTATTGT
Found at i:50833735 original size:18 final size:18
Alignment explanation
Indices: 50833708--50833747 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
50833698 GCTCATAAGG
*
50833708 TTATATAATGACATTTAA
1 TTATAGAATGACATTTAA
50833726 TTATAGAATGACATTTAA
1 TTATAGAATGACATTTAA
50833744 TTAT
1 TTAT
50833748 TGAGTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (18 bp):
TTATAGAATGACATTTAA
Found at i:50834258 original size:16 final size:16
Alignment explanation
Indices: 50834237--50834273 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
50834227 AGTTTTGTAA
50834237 AAGAATTTTACGGTTC
1 AAGAATTTTACGGTTC
50834253 AAGAATTTTACGGTTC
1 AAGAATTTTACGGTTC
50834269 AAGAA
1 AAGAA
50834274 AATTTTTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (16 bp):
AAGAATTTTACGGTTC
Found at i:50836420 original size:16 final size:16
Alignment explanation
Indices: 50836399--50836430 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50836389 ATTATTGAGA
50836399 GGTGTGTTTTCTTTGT
1 GGTGTGTTTTCTTTGT
50836415 GGTGTGTTTTCTTTGT
1 GGTGTGTTTTCTTTGT
50836431 TCGTAGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.06, G:0.31, T:0.62
Consensus pattern (16 bp):
GGTGTGTTTTCTTTGT
Found at i:50837136 original size:16 final size:16
Alignment explanation
Indices: 50837115--50837147 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50837105 CTTTTAGCGA
*
50837115 CTCTAAGCTAGGTTGT
1 CTCTAAGCTAAGTTGT
50837131 CTCTAAGCTAAGTTGT
1 CTCTAAGCTAAGTTGT
50837147 C
1 C
50837148 CTGGTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (16 bp):
CTCTAAGCTAAGTTGT
Found at i:50843937 original size:7 final size:7
Alignment explanation
Indices: 50843925--50843950 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
50843915 TCTCTTGATA
50843925 AATTATT
1 AATTATT
50843932 AATTATT
1 AATTATT
50843939 AATTATT
1 AATTATT
50843946 AATTA
1 AATTA
50843951 ATCTATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AATTATT
Found at i:50844215 original size:21 final size:21
Alignment explanation
Indices: 50844199--50844278 Score: 58
Period size: 23 Copynumber: 3.7 Consensus size: 21
50844189 AGATAATTTT
50844199 TAAATATAATAATATAATTGA
1 TAAATATAATAATATAATTGA
* *
50844220 TAAA-AGT-AT-AGATAATCATGT
1 TAAATA-TAATAATATAAT--TGA
* *
50844241 TAAGTATAATAATATATATTTA
1 TAAATATAATAATATA-ATTGA
50844263 TAAATATAAATAATAT
1 TAAATAT-AATAATAT
50844279 TACTTAACTA
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
19 6 0.14
20 3 0.07
21 11 0.25
22 10 0.23
23 12 0.27
24 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (21 bp):
TAAATATAATAATATAATTGA
Found at i:50844216 original size:40 final size:41
Alignment explanation
Indices: 50844188--50844278 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 41
50844178 TATCAAGATT
* *
50844188 TAGATAAT-TTTTAAATATAATAATATAATTGATAAAAGTA
1 TAGATAATATGTTAAATATAATAATATAATTTATAAAAGTA
*
50844228 TAGATAATCATGTTAAGTATAATAATATATATTTAT-AAA-TA
1 TAGATAAT-ATGTTAAATATAATAATATA-ATTTATAAAAGTA
*
50844269 TAAATAATAT
1 TAGATAATAT
50844279 TACTTAACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
40 10 0.23
41 9 0.20
42 20 0.45
43 5 0.11
ACGTcount: A:0.52, C:0.01, G:0.07, T:0.41
Consensus pattern (41 bp):
TAGATAATATGTTAAATATAATAATATAATTTATAAAAGTA
Found at i:50844954 original size:16 final size:17
Alignment explanation
Indices: 50844928--50844962 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
50844918 TACGTACTTC
50844928 ATAATTATATTAATAAT
1 ATAATTATATTAATAAT
*
50844945 ATAA-TATATTTATAAT
1 ATAATTATATTAATAAT
50844961 AT
1 AT
50844963 TTCAAGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATTATATTAATAAT
Found at i:50847799 original size:47 final size:47
Alignment explanation
Indices: 50847747--50847857 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
50847737 GGTTTAACCA
* * * *
50847747 CATATCTGTTCTAGTAGTTTGACTGCAATTATGGTGGCTCGACCACT
1 CATATCTATTCTAGCAGCTTGACTGCAATTATGGTGGCTCGACCACC
*
50847794 CATATCTATTCTGGCAGCTTGACTGCAATTATGGTGGCTCGACCACC
1 CATATCTATTCTAGCAGCTTGACTGCAATTATGGTGGCTCGACCACC
*
50847841 CATATCTATTCTGGCAG
1 CATATCTATTCTAGCAG
50847858 TTTATTTGCG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (47 bp):
CATATCTATTCTAGCAGCTTGACTGCAATTATGGTGGCTCGACCACC
Found at i:50853403 original size:42 final size:41
Alignment explanation
Indices: 50853356--50853494 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 41
50853346 AGGGATATGG
* *
50853356 GCGTGTGCCTAGGCTGTGTGAGCTACACGAGCAAAGTCATGA
1 GCGTGTGCC-AGGCCGTGTGAGCTACACGAGCAAAGACATGA
* * *
50853398 GCGTGTGTCCAGGCCGTGTGAGATACACGAGCAACGACATGG
1 GCGTGTG-CCAGGCCGTGTGAGCTACACGAGCAAAGACATGA
* * * *
50853440 GTGTGTGCCCAGGCCGTGTGAGCCACACGGGCAAAGACATGG
1 GCGTGTG-CCAGGCCGTGTGAGCTACACGAGCAAAGACATGA
*
50853482 GTGTGTGTCCAGG
1 GCGTGTG-CCAGG
50853495 ACATGTAACT
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 82 0.98
43 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.37, T:0.19
Consensus pattern (41 bp):
GCGTGTGCCAGGCCGTGTGAGCTACACGAGCAAAGACATGA
Found at i:50854538 original size:20 final size:20
Alignment explanation
Indices: 50854515--50854562 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
50854505 TCAGCATTGC
* *
50854515 TCTGTTCTGTTCCATTCTGT
1 TCTGTTCTGCTCCATTCGGT
*
50854535 TCTGTTCTGCTCTATTCGGT
1 TCTGTTCTGCTCCATTCGGT
*
50854555 TTTGTTCT
1 TCTGTTCT
50854563 ATTTGAATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.04, C:0.23, G:0.17, T:0.56
Consensus pattern (20 bp):
TCTGTTCTGCTCCATTCGGT
Found at i:50855385 original size:22 final size:21
Alignment explanation
Indices: 50855346--50855403 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
50855336 CTATTGTATC
* *
50855346 AATAATTTTTTCAATAATTGT
1 AATATTTTTTTAAATAATTGT
50855367 AATATTTTTTTAAAGTAATTGT
1 AATATTTTTTTAAA-TAATTGT
*
50855389 AATATTATTTTAAAT
1 AATATTTTTTTAAAT
50855404 CCAAGACTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 13 0.39
22 20 0.61
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (21 bp):
AATATTTTTTTAAATAATTGT
Found at i:50856825 original size:49 final size:49
Alignment explanation
Indices: 50856771--50856867 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
50856761 ATTTATTTGA
50856771 GTTGATTTTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGG
1 GTTGATTTTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGG
50856820 GTTGATTTTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGG
1 GTTGATTTTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGG
50856868 AGACTAAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.37
Consensus pattern (49 bp):
GTTGATTTTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGG
Found at i:50856880 original size:49 final size:49
Alignment explanation
Indices: 50856778--50856881 Score: 156
Period size: 49 Copynumber: 2.1 Consensus size: 49
50856768 TGAGTTGATT
** **
50856778 TTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGGGTTGATT
1 TTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGGACTGAAA
50856827 TTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGAGACT-AAA
1 TTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGG-GACTGAAA
50856876 TTAATT
1 TTAATT
50856882 AATTCAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 48 0.96
50 2 0.04
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (49 bp):
TTAATTTTGAAGCATAAAATAAAAATTTACGATTTAAAAGGGACTGAAA
Found at i:50858019 original size:4 final size:4
Alignment explanation
Indices: 50858010--50858081 Score: 144
Period size: 4 Copynumber: 18.0 Consensus size: 4
50858000 ATCCCGATAC
50858010 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
50858058 ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT
50858082 GGATGTTTCT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 68 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:50859356 original size:15 final size:15
Alignment explanation
Indices: 50859315--50859357 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
50859305 AAGTATATAT
50859315 TTAAGTGTTGAAAAAA
1 TTAAGTGTT-AAAAAA
* * *
50859331 ATAAATATTAAAAAA
1 TTAAGTGTTAAAAAA
50859346 TTAAGTGTTAAA
1 TTAAGTGTTAAA
50859358 TTTAAGTTAT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.33
Consensus pattern (15 bp):
TTAAGTGTTAAAAAA
Found at i:50862620 original size:20 final size:18
Alignment explanation
Indices: 50862575--50862627 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 18
50862565 ACTGAAATTA
*
50862575 TGTTTAAATTAGATTAGAT
1 TGTTTAAATTA-ATTAAAT
50862594 TGATTTAAATTAATTGAAAT
1 TG-TTTAAATTAATT-AAAT
50862614 CTGTTTAAGATTAA
1 -TGTTTAA-ATTAA
50862628 AATTAGATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 5 0.17
20 17 0.59
21 7 0.24
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (18 bp):
TGTTTAAATTAATTAAAT
Found at i:50863555 original size:13 final size:13
Alignment explanation
Indices: 50863537--50863573 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
50863527 AGAACGAAAC
50863537 AGAGAAGAAAAAG
1 AGAGAAGAAAAAG
50863550 AGAGAAAGAAAAAG
1 AGAG-AAGAAAAAG
50863564 -GAGAA-AAAAA
1 AGAGAAGAAAAA
50863574 ATTAGGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 5 0.22
12 2 0.09
13 7 0.30
14 9 0.39
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AGAGAAGAAAAAG
Found at i:50863560 original size:14 final size:14
Alignment explanation
Indices: 50863537--50863574 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
50863527 AGAACGAAAC
50863537 AGAG-AAGAAAAAG
1 AGAGAAAGAAAAAG
50863550 AGAGAAAGAAAAAG
1 AGAGAAAGAAAAAG
50863564 -GAGAAA-AAAAA
1 AGAGAAAGAAAAA
50863575 TTAGGGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.21
13 10 0.42
14 9 0.38
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AGAGAAAGAAAAAG
Found at i:50875298 original size:30 final size:30
Alignment explanation
Indices: 50875264--50875326 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
50875254 ACTTAACAAG
*
50875264 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
* *
50875294 CAAATGCCTTTAAAATAATAATAAAATCAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
50875324 CAA
1 CAA
50875327 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATCAA
Found at i:50876107 original size:24 final size:24
Alignment explanation
Indices: 50876057--50876108 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
50876047 AATCAAAGTC
* **
50876057 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
50876081 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
50876105 AAAT
1 AAAT
50876109 CTTTTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:50880254 original size:24 final size:24
Alignment explanation
Indices: 50880227--50880302 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
50880217 AATCAAAGTC
50880227 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
*
50880251 AAATATATTATGCAAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
50880275 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
50880299 AAAT
1 AAAT
50880303 CTTTTCGAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:50885048 original size:7 final size:7
Alignment explanation
Indices: 50885028--50885073 Score: 67
Period size: 7 Copynumber: 6.4 Consensus size: 7
50885018 TATATTATAA
50885028 CTCTCTC
1 CTCTCTC
50885035 C-CTCTC
1 CTCTCTC
50885041 CTCTCTC
1 CTCTCTC
50885048 CTCTCTC
1 CTCTCTC
50885055 CTCTCTC
1 CTCTCTC
50885062 CATCTCTTC
1 C-TCTC-TC
50885071 CTC
1 CTC
50885074 AATCCAACAC
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.17
7 21 0.58
8 6 0.17
9 3 0.08
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41
Consensus pattern (7 bp):
CTCTCTC
Found at i:50886334 original size:4 final size:4
Alignment explanation
Indices: 50886317--50886346 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
50886307 AAATTCAAGG
*
50886317 TTTA TTTG TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
50886347 ATGATGGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:50895791 original size:21 final size:20
Alignment explanation
Indices: 50895766--50895805 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50895756 GATGTCTTCA
50895766 ATTCTATCATTGGTTGGCTTG
1 ATTCTATCA-TGGTTGGCTTG
* *
50895787 ATTCTTTCATGTTTGGCTT
1 ATTCTATCATGGTTGGCTT
50895806 TAGTAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.12, C:0.15, G:0.20, T:0.53
Consensus pattern (20 bp):
ATTCTATCATGGTTGGCTTG
Found at i:50895831 original size:30 final size:30
Alignment explanation
Indices: 50895795--50895856 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
50895785 TGATTCTTTC
*
50895795 ATGTTTGGCTTTAGTAATAATCTGTTAACA
1 ATGTTTGGCTTTAGTAATAATCTGCTAACA
50895825 ATGTTTGGCTTTAGTAATAATCTGCTAACA
1 ATGTTTGGCTTTAGTAATAATCTGCTAACA
50895855 AT
1 AT
50895857 CTTCACAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (30 bp):
ATGTTTGGCTTTAGTAATAATCTGCTAACA
Found at i:50908263 original size:29 final size:29
Alignment explanation
Indices: 50908231--50908322 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
50908221 ACCGTGTATC
50908231 ACACATGGTCTGTCACACGACT-GTGTGTA
1 ACACATGGTCTGTCACACG-CTCGTGTGTA
* * *
50908260 ACACATGGTTTGTCACACGGTCGTGTGTG
1 ACACATGGTCTGTCACACGCTCGTGTGTA
* *
50908289 ACACATGGTCTGTCACACGGTCGTGTGTG
1 ACACATGGTCTGTCACACGCTCGTGTGTA
50908318 ACACA
1 ACACA
50908323 CGGCCTACCA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
28 1 0.02
29 57 0.98
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (29 bp):
ACACATGGTCTGTCACACGCTCGTGTGTA
Found at i:50908298 original size:17 final size:17
Alignment explanation
Indices: 50908273--50908325 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
50908263 CATGGTTTGT
50908273 CACACGGTCGTGTGTGA
1 CACACGGTCGTGTGTGA
*
50908290 CACATGGTC---TGT--
1 CACACGGTCGTGTGTGA
50908302 CACACGGTCGTGTGTGA
1 CACACGGTCGTGTGTGA
50908319 CACACGG
1 CACACGG
50908326 CCTACCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 8 0.28
14 3 0.10
15 3 0.10
17 15 0.52
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (17 bp):
CACACGGTCGTGTGTGA
Found at i:50908334 original size:29 final size:29
Alignment explanation
Indices: 50908273--50908334 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
50908263 CATGGTTTGT
* * **
50908273 CACACGGTCGTGTGTGACACATGGTCTGT
1 CACACGGTCGTGTGTGACACACGGCCTAC
50908302 CACACGGTCGTGTGTGACACACGGCCTAC
1 CACACGGTCGTGTGTGACACACGGCCTAC
50908331 CACA
1 CACA
50908335 TGGCCCTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (29 bp):
CACACGGTCGTGTGTGACACACGGCCTAC
Found at i:50911830 original size:11 final size:11
Alignment explanation
Indices: 50911810--50911852 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
50911800 GAACGAACGA
50911810 AAAG-AAAAAG
1 AAAGAAAAAAG
*
50911820 AACGAAAAAAG
1 AAAGAAAAAAG
*
50911831 AAGGAAAAATAG
1 AAAGAAAAA-AG
50911843 AAAGAAAAAA
1 AAAGAAAAAA
50911853 ACAAATCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 3 0.11
11 15 0.54
12 10 0.36
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (11 bp):
AAAGAAAAAAG
Found at i:50911969 original size:15 final size:15
Alignment explanation
Indices: 50911949--50911987 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
50911939 GCAATTTTTT
50911949 TAATAA-AACAAAAAA
1 TAATAATAA-AAAAAA
*
50911964 TAATAATAAAAGAAA
1 TAATAATAAAAAAAA
50911979 TAATAATAA
1 TAATAATAA
50911988 TAATAACAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 20 0.91
16 2 0.09
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
TAATAATAAAAAAAA
Found at i:50911972 original size:18 final size:18
Alignment explanation
Indices: 50911949--50911996 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
50911939 GCAATTTTTT
50911949 TAATAAAACAAAAAATAA
1 TAATAAAACAAAAAATAA
* *
50911967 TAATAAAAGAAATAATAA
1 TAATAAAACAAAAAATAA
50911985 TAATAATAACAA
1 TAATAA-AACAA
50911997 TATTATCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (18 bp):
TAATAAAACAAAAAATAA
Found at i:50915864 original size:75 final size:75
Alignment explanation
Indices: 50915741--50915891 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
50915731 TAATTAATAG
*
50915741 TTTAGGTACTGGAATTCTTGTCGTAGTGTTCGCTTCAGAAATCAATAAGGTGTGTGACTCGATTA
1 TTTAGGTACTGGAATTCTTGCCGTAGTGTTCGCTTCAGAAATCAATAAGGTGTGTGACTCGATTA
50915806 TGTGAAAACA
66 TGTGAAAACA
50915816 TTTAGGTACTGGAATTCTTGCCGTAGTGTTCGCTTCAGAAATCAATAAGGTGTGTGACTCGATTA
1 TTTAGGTACTGGAATTCTTGCCGTAGTGTTCGCTTCAGAAATCAATAAGGTGTGTGACTCGATTA
50915881 TGTGAAAACA
66 TGTGAAAACA
50915891 T
1 T
50915892 CAAATGAGAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (75 bp):
TTTAGGTACTGGAATTCTTGCCGTAGTGTTCGCTTCAGAAATCAATAAGGTGTGTGACTCGATTA
TGTGAAAACA
Found at i:50916539 original size:23 final size:24
Alignment explanation
Indices: 50916513--50916559 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
50916503 TGGGAGTAGG
*
50916513 ATCTGTGACTGCATCTG-ATCTGA
1 ATCTATGACTGCATCTGTATCTGA
* *
50916536 ATCTATGCCTGCATTTGTATCTGA
1 ATCTATGACTGCATCTGTATCTGA
50916560 TTATGTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (24 bp):
ATCTATGACTGCATCTGTATCTGA
Found at i:50920253 original size:27 final size:27
Alignment explanation
Indices: 50920211--50920266 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
50920201 GAGCTCAATC
50920211 ACAATACTATAATGGAATGACTTCGTG
1 ACAATACTATAATGGAATGACTTCGTG
* *
50920238 ACAATACTATAGTGGAATGACTTTGTG
1 ACAATACTATAATGGAATGACTTCGTG
50920265 AC
1 AC
50920267 TAAGTAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (27 bp):
ACAATACTATAATGGAATGACTTCGTG
Found at i:50920506 original size:27 final size:27
Alignment explanation
Indices: 50920464--50920519 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
50920454 GAGCTCAATC
**
50920464 ACAATACTATAATGGAATGGTTTCGTG
1 ACAATACTATAATGGAATGACTTCGTG
*
50920491 ACAATACTATAGTGGAATGACTTCGTG
1 ACAATACTATAATGGAATGACTTCGTG
50920518 AC
1 AC
50920520 TAAGTAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (27 bp):
ACAATACTATAATGGAATGACTTCGTG
Found at i:50920571 original size:253 final size:252
Alignment explanation
Indices: 50920124--50920632 Score: 919
Period size: 253 Copynumber: 2.0 Consensus size: 252
50920114 AGGACATCCT
*
50920124 ATGAGGGTAACACATTTATGACAAGGCTATTGACGAGCACTTACTGAGTAAATTTCACAATGGTA
1 ATGAGGGTAACACATTTATGACAAGGCCATTGACGAGCACTTACTGAGTAAATTTCACAATGGTA
50920189 GATTATTAGGGAGAGCTCAATCACAATACTATAATGGAATGACTTCGTGACAATACTATAGTGGA
66 GATTATTAGGGAGAGCTCAATCACAATACTATAATGGAATGACTTCGTGACAATACTATAGTGGA
*
50920254 ATGACTTTGTGACTAAGTAAGTTTATAATTAATAGGTGAAAAGCTAGAACTTAATTATAAATTAT
131 ATGACTTCGTGACTAAGTAAGTTTATAATTAATAGGTGAAAAGCTAGAACTTAATTATAAATTAT
* **
50920319 TTGAACTCTAATTATATATGTTCAATTGGTCCTTCCGTTAGCTGATTGATACCATAA
196 TTGAACTCTAATTATATATGTCCAATCAGTCCTTCCGTTAGCTGATTGATACCATAA
*
50920376 ATGAGGGTAACACATTTATGACAAGGCCATTGGACGAGCACTTACTGAGTAACTTTCACAATGGT
1 ATGAGGGTAACACATTTATGACAAGGCCATT-GACGAGCACTTACTGAGTAAATTTCACAATGGT
**
50920441 AGATTATTAGGGAGAGCTCAATCACAATACTATAATGGAATGGTTTCGTGACAATACTATAGTGG
65 AGATTATTAGGGAGAGCTCAATCACAATACTATAATGGAATGACTTCGTGACAATACTATAGTGG
*
50920506 AATGACTTCGTGACTAAGTAAGTTTATAATTAATAGGTGAAAAGCTGGAACTTAATTATAAATTA
130 AATGACTTCGTGACTAAGTAAGTTTATAATTAATAGGTGAAAAGCTAGAACTTAATTATAAATTA
*
50920571 TTTGAACTCTAATTATATATGTCCAATCAGTCCTTTCGTTAGCTGATTGATACCATAA
195 TTTGAACTCTAATTATATATGTCCAATCAGTCCTTCCGTTAGCTGATTGATACCATAA
50920629 ATGA
1 ATGA
50920633 ATTATAAATG
Statistics
Matches: 246, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
252 30 0.12
253 216 0.88
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (252 bp):
ATGAGGGTAACACATTTATGACAAGGCCATTGACGAGCACTTACTGAGTAAATTTCACAATGGTA
GATTATTAGGGAGAGCTCAATCACAATACTATAATGGAATGACTTCGTGACAATACTATAGTGGA
ATGACTTCGTGACTAAGTAAGTTTATAATTAATAGGTGAAAAGCTAGAACTTAATTATAAATTAT
TTGAACTCTAATTATATATGTCCAATCAGTCCTTCCGTTAGCTGATTGATACCATAA
Found at i:50922363 original size:19 final size:20
Alignment explanation
Indices: 50922323--50922365 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
50922313 TCATTAAATA
*
50922323 AAAAGTATCTAAAAATTACT
1 AAAAGTAGCTAAAAATTACT
*
50922343 AAAAGTAGCTTAAAA-TACT
1 AAAAGTAGCTAAAAATTACT
50922362 AAAA
1 AAAA
50922366 TATGAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAAGTAGCTAAAAATTACT
Found at i:50934137 original size:18 final size:18
Alignment explanation
Indices: 50934114--50934153 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
50934104 ACTAGTATAG
50934114 TATTCTTTGCAACATTTT
1 TATTCTTTGCAACATTTT
50934132 TATTCTTTGCAACATTTT
1 TATTCTTTGCAACATTTT
50934150 TATT
1 TATT
50934154 TACTTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (18 bp):
TATTCTTTGCAACATTTT
Found at i:50935388 original size:20 final size:20
Alignment explanation
Indices: 50935363--50935402 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
50935353 GGTTTTCACC
50935363 TTTGTTGGATT-AATTATTTA
1 TTTGTT-GATTAAATTATTTA
50935383 TTTGTTGATTAAATTATTTA
1 TTTGTTGATTAAATTATTTA
50935403 AAAGTTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (20 bp):
TTTGTTGATTAAATTATTTA
Found at i:50940024 original size:17 final size:18
Alignment explanation
Indices: 50939994--50940027 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50939984 TCCCATCTTA
*
50939994 AATTTTTATTTTTAAATG
1 AATTTTTATCTTTAAATG
50940012 AATTTTTA-CTTTAAAT
1 AATTTTTATCTTTAAAT
50940028 AAGATGTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
AATTTTTATCTTTAAATG
Found at i:50943263 original size:7 final size:7
Alignment explanation
Indices: 50943251--50943277 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
50943241 AGAATCAGAA
50943251 TTCATAT
1 TTCATAT
50943258 TTCATAT
1 TTCATAT
50943265 TTCATAT
1 TTCATAT
50943272 TTCATA
1 TTCATA
50943278 GTTTATGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (7 bp):
TTCATAT
Found at i:50944600 original size:21 final size:22
Alignment explanation
Indices: 50944571--50944629 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
50944561 CTAAATTTTG
* *
50944571 AAATGTAAAAAGTAAAAAATAA
1 AAATATAAAAACTAAAAAATAA
** *
50944593 AAAT-TAAATTCTTAAAAATAA
1 AAATATAAAAACTAAAAAATAA
50944614 AAATATAAAAACTAAA
1 AAATATAAAAACTAAA
50944630 TTTCAAATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.24
Consensus pattern (22 bp):
AAATATAAAAACTAAAAAATAA
Found at i:50944621 original size:29 final size:29
Alignment explanation
Indices: 50944576--50944631 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
50944566 TTTTGAAATG
*
50944576 TAAAAAGTAAAAAATAAAAATTAAATTCT
1 TAAAAAGTAAAAAATAAAAACTAAATTCT
50944605 TAAAAA-TAAAAATATAAAAACTAAATT
1 TAAAAAGTAAAAA-ATAAAAACTAAATT
50944632 TCAAATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.27
Consensus pattern (29 bp):
TAAAAAGTAAAAAATAAAAACTAAATTCT
Found at i:50947035 original size:34 final size:35
Alignment explanation
Indices: 50946969--50947035 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
50946959 CAAACACCAG
* *
50946969 AAAATATTTTCCAGTAAATCATTTTATAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
50947004 AAAACATTTTCCTG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
50947036 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:50964961 original size:28 final size:28
Alignment explanation
Indices: 50964926--50964989 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
50964916 AAAAAATAAC
**
50964926 CAAAATATTATAACTTTTTTTTATTTAT
1 CAAAATATTATAAAATTTTTTTATTTAT
50964954 CAAAATATTATAAAATTTTTTTATTTAT
1 CAAAATATTATAAAATTTTTTTATTTAT
*
50964982 AAAAATAT
1 CAAAATAT
50964990 ACAAAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (28 bp):
CAAAATATTATAAAATTTTTTTATTTAT
Found at i:50965018 original size:19 final size:19
Alignment explanation
Indices: 50964993--50965030 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 19
50964983 AAAATATACA
50964993 AAAAAAAAACAAAAACCTGC
1 AAAAAAAAA-AAAAACCTGC
50965013 AAAAAAAAAAAAAACCTG
1 AAAAAAAAAAAAAACCTG
50965031 TGGCGGCGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.74, C:0.16, G:0.05, T:0.05
Consensus pattern (19 bp):
AAAAAAAAAAAAAACCTGC
Found at i:50965685 original size:23 final size:23
Alignment explanation
Indices: 50965659--50965730 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 23
50965649 ACTCTATTTT
50965659 AATTTAATAAACTATTCTCATCA
1 AATTTAATAAACTATTCTCATCA
*
50965682 AATTACTTAATAACTCTATT-T--T--
1 AA-T--TTAATAA-ACTATTCTCATCA
50965704 AATTTAATAAACTATTCTCATCA
1 AATTTAATAAACTATTCTCATCA
50965727 AATT
1 AATT
50965731 ACCAAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
18 5 0.13
19 8 0.21
21 2 0.05
22 2 0.05
23 6 0.16
24 2 0.05
26 8 0.21
27 5 0.13
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTTAATAAACTATTCTCATCA
Found at i:50965693 original size:45 final size:45
Alignment explanation
Indices: 50965644--50965732 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
50965634 TCTAATTAAG
50965644 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
50965689 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTAC
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTAC
50965733 CAAAATAGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (45 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
Done.