Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 169 of 218
Found at i:51252032 original size:123 final size:123
Alignment explanation
Indices: 51251738--51252113 Score: 545
Period size: 123 Copynumber: 3.0 Consensus size: 123
51251728 CCCAAACATG
* * * * * * *
51251738 CTACTGTAGCAAAAGCGCATCCACGAGGTCACAATTTTCAGAAATTCTTCTCAAATTGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCATCCTG
*
51251803 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTCCATGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAA-TTATTTCTTCCATGAC
** * * *
51251863 GGACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTATAAATTCTTCTCAAATAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
51251928 TAGAAGCAATTTTATACTATTTGCTTAGAAAAGTCAAAAAAATTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAATTATTTCTTCCATGAC
51251986 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * *
51252051 TAGAAGCGATTTTATACTATTTGATCAGAAATGTCAACTCAAAATTATTTCTTCCAAGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAA--AAAAATTATTTCTTCCATGAC
51252111 CTA
1 CTA
51252114 AAAATCCTAT
Statistics
Matches: 224, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
123 109 0.49
124 66 0.29
125 49 0.22
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.30
Consensus pattern (123 bp):
CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAATTATTTCTTCCATGAC
Found at i:51252742 original size:21 final size:21
Alignment explanation
Indices: 51252717--51252756 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51252707 TATTTTTTAC
*
51252717 TTAAAAATATATTTATTAAAT
1 TTAAAAATAAATTTATTAAAT
**
51252738 TTAAATTTAAATTTATTAA
1 TTAAAAATAAATTTATTAA
51252757 TAAATGTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAAAAATAAATTTATTAAAT
Found at i:51255293 original size:71 final size:72
Alignment explanation
Indices: 51255119--51255322 Score: 320
Period size: 71 Copynumber: 2.8 Consensus size: 72
51255109 TCCTTTCAAA
* ** * *
51255119 CTCAAGTTTTAAATGATCTCGGGAATTAAGAGGAGATCGTGTCCTAACTTACTGGGCATGATCCT
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGATCCA
51255184 TTTTTTT
66 TTTTTTT
* * * *
51255191 CTCAAGTTTTAAACGGTCTCGGGAATTAAGAAAATATTGTGTCATAACTTACTGGGCATTAT-CA
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGATCCA
51255255 TTTTTTT
66 TTTTTTT
51255262 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGA
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGA
51255323 CCCCCTCTTT
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 65 0.55
72 54 0.45
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (72 bp):
CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGATCCA
TTTTTTT
Found at i:51262669 original size:27 final size:27
Alignment explanation
Indices: 51262631--51262712 Score: 155
Period size: 27 Copynumber: 3.0 Consensus size: 27
51262621 ACTCCGAAGG
51262631 ATGAGACCTGACGTCTTGTTCCTAAGA
1 ATGAGACCTGACGTCTTGTTCCTAAGA
*
51262658 ATGAGACCTGACGTCTTGTTCCTAAGG
1 ATGAGACCTGACGTCTTGTTCCTAAGA
51262685 ATGAGACCTGACGTCTTGTTCCTAAGA
1 ATGAGACCTGACGTCTTGTTCCTAAGA
51262712 A
1 A
51262713 GCAGTTTGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (27 bp):
ATGAGACCTGACGTCTTGTTCCTAAGA
Found at i:51266846 original size:129 final size:129
Alignment explanation
Indices: 51266603--51266899 Score: 362
Period size: 129 Copynumber: 2.3 Consensus size: 129
51266593 TGAAACTATA
* * * * *
51266603 AATCTTATCTCCCTGAGGTTACAGTGAAGCGGATTAAAAACATAGATCTCATCTCTCTGAAATTA
1 AATCCTATCTCCCTGAAGTTACAGTGGAGCGAATTAAAAACACAGATCTCATCTCTCTGAAATTA
* * * * * *
51266668 CAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAACC
66 CAGTAGAGCAGATCGCAACCAATATTATCTCACTAAAGTTACAGCGGAGCAGACAGAAGAAACC
* * * *
51266732 AATCCTATCTCACTGAAGTTACAGTGGAGCGAATTAAAAACACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTACAGTGGAGCGAATTAAAAACACAGATCTCATCTCTCTGAAATTA
* * ** ** **
51266797 CAGTAGAGCAGATCGCAACCAATATTATCTCATTGAAGTTACAGCGGAGCAGATTGAAGCTATT
66 CAGTAGAGCAGATCGCAACCAATATTATCTCACTAAAGTTACAGCGGAGCAGACAGAAGAAACC
*
51266861 AATCCTATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAAA
1 AATCCTATCTCCCTGAAGTTACAGTGGAGCGA-ATTAAAA
51266900 CGATGAATCC
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
128 1 0.01
129 141 0.99
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (129 bp):
AATCCTATCTCCCTGAAGTTACAGTGGAGCGAATTAAAAACACAGATCTCATCTCTCTGAAATTA
CAGTAGAGCAGATCGCAACCAATATTATCTCACTAAAGTTACAGCGGAGCAGACAGAAGAAACC
Found at i:51266912 original size:44 final size:42
Alignment explanation
Indices: 51266693--51266900 Score: 143
Period size: 44 Copynumber: 4.8 Consensus size: 42
51266683 CATCCAGTCT
* * * *
51266693 TATCTCCCTAAAGTTGCAGTGGAGCAGA-CAGAAGAAACCAATCC
1 TATCTCACTGAAGTTGCAGTGGAGCAGATTA-AA-ACA-CAATCC
* *
51266737 TATCTCACTGAAGTTACAGTGGAGC-GAATTAAAAACACAGATCT
1 TATCTCACTGAAGTTGCAGTGGAGCAG-ATT-AAAACACA-ATCC
* * *** **
51266781 TATCTCTCTGAAGTTGCAGTAGAGCAGATCGCAAC-CAATAT
1 TATCTCACTGAAGTTGCAGTGGAGCAGATTAAAACACAATCC
* * * * * *
51266822 TATCTCATTGAAGTTACAGCGGAGCAGATTGAAGCTATTAATCC
1 TATCTCACTGAAGTTGCAGTGGAGCAGATTAAAAC-A-CAATCC
*
51266866 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC
1 TATCTCACTGAAGTTGCAGTGGAGCAGATTAAAAC
51266901 GATGAATCCT
Statistics
Matches: 126, Mismatches: 30, Indels: 16
0.73 0.17 0.09
Matches are distributed among these distances:
41 30 0.24
42 2 0.02
43 6 0.05
44 84 0.67
45 3 0.02
46 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (42 bp):
TATCTCACTGAAGTTGCAGTGGAGCAGATTAAAACACAATCC
Found at i:51266924 original size:44 final size:44
Alignment explanation
Indices: 51266832--51266929 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 44
51266822 TATCTCATTG
* * * * * *
51266832 AAGTTACAGCGGAGCAGATTGAAGCTATTAATCCTATCTCCCTG
1 AAGTTACAGTGGAGCAGATTAAAACGATGAATCCTATCTCCCTA
* *
51266876 AAGTTGCAGTGGAGCAGATTAAAACGATGAATCCTATAC-CTCTA
1 AAGTTACAGTGGAGCAGATTAAAACGATGAATCCTAT-CTCCCTA
51266920 AAGTTACAGT
1 AAGTTACAGT
51266930 AGGTCGGATT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (44 bp):
AAGTTACAGTGGAGCAGATTAAAACGATGAATCCTATCTCCCTA
Found at i:51269488 original size:71 final size:70
Alignment explanation
Indices: 51269367--51269500 Score: 223
Period size: 71 Copynumber: 1.9 Consensus size: 70
51269357 TCCTTTCAAA
* **
51269367 CTCAAGTTTTAAATGATCTGGGAATTAAGAGGAGATCGTGTCCTAACTTACTGGGCATGATCCTT
1 CTCAAGTTTTAAACGATCTGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCTT
51269432 TTTTT
66 TTTTT
*
51269437 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGATCC
1 CTCAAGTTTTAAACGATCT-GGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCC
51269501 CCTTTTTTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
70 18 0.31
71 41 0.69
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (70 bp):
CTCAAGTTTTAAACGATCTGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCTT
TTTTT
Found at i:51271280 original size:18 final size:17
Alignment explanation
Indices: 51271257--51271306 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
51271247 AATTATTTAA
51271257 AAAATTTAAAAAGTATTT
1 AAAATTTAAAAAGTA-TT
* *
51271275 AAAATTAAATAAATTATT
1 AAAATTTAA-AAAGTATT
51271293 AAAATTTCAAAAAG
1 AAAATTT-AAAAAG
51271307 AATACATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (17 bp):
AAAATTTAAAAAGTATT
Found at i:51279742 original size:21 final size:22
Alignment explanation
Indices: 51279695--51279742 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
51279685 CAAAAAAAAC
* * *
51279695 ATAAAATCAGTCTAAAGTTTTA
1 ATAAAATCAGTCCAAAATTTCA
51279717 ATAAAATC-GTCCAAAATTTCA
1 ATAAAATCAGTCCAAAATTTCA
51279738 ATAAA
1 ATAAA
51279743 CAATAACTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (22 bp):
ATAAAATCAGTCCAAAATTTCA
Found at i:51280862 original size:16 final size:14
Alignment explanation
Indices: 51280837--51280874 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
51280827 TTATAAAACC
51280837 TTAT-TTATAAATGT
1 TTATATTATAAAT-T
51280851 TATATATTATAAATT
1 T-TATATTATAAATT
51280866 TTATATTAT
1 TTATATTAT
51280875 TTTTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 5 0.23
16 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TTATATTATAAATT
Found at i:51283723 original size:44 final size:43
Alignment explanation
Indices: 51283527--51284012 Score: 309
Period size: 43 Copynumber: 11.3 Consensus size: 43
51283517 TCTTTTGCCG
* * * * *
51283527 CGCCACTATAGAT-GTGGCTCTTTAGCGGCGCTTACATACAAAA
1 CGCCACTATAGATAG-GGTTCTATAGCGGCGCTTATACAAAAAA
* ** * * *
51283570 CGCCACTATAGATCGGCCTCTCTAGCGGCGCTTATCCGAAAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTATACAAAAAA
** * ** * * **
51283613 CGCCACTATAGAGGGTGGGTCTATTCCGACGATTATACTCAAAA
1 CGCCACTATAGATAG-GGTTCTATAGCGGCGCTTATACAAAAAA
* *
51283657 CGCCACTATAGAT-GTGATCTATAGCGGCGCTTATACAAAAAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTATAC-AAAAAA
* * * * *
51283700 TGCCACTATAGCTTGGGTTCTATAGCGGCGCTTGTACAACAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTATACAAAAAA
* * * ** *
51283743 CGCCACTAGAGAGAGGGTTCTTTTCCGGCGCTTATACAAGAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTATACAAAAAA
** * * **
51283786 CGCCACTATAGATAGGGTTCT-TCCCCGGCGCTTCTATAGGAAA
1 CGCCACTATAGATAGGGTTCTAT-AGCGGCGCTTATACAAAAAA
* * ** * *
51283829 CGCCACGATAGAT-GAGGTTCTTTTCCGGCGCTTATGCAAGAAA
1 CGCCACTATAGATAG-GGTTCTATAGCGGCGCTTATACAAAAAA
* * * *
51283872 CGCCACGATAGATAGGGTTCTTTTGCGGCGCTTATACAAGAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTATACAAAAAA
* * * *
51283915 CGCCACGATAGATAGGGTTCTTTTGCGGCGCTTAGT-CTAAAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTA-TACAAAAAA
* * ** * * *
51283958 CGCCACGACAGACGGGGATCTTTCGCGGCGCTTATGTA-AAAAAA
1 CGCCACTATAGATAGGGTTCTATAGCGGCGCTTA--TACAAAAAA
*
51284002 CGCCACAATAG
1 CGCCACTATAG
51284013 GCTGTGTTTT
Statistics
Matches: 364, Mismatches: 68, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
42 18 0.05
43 276 0.76
44 70 0.19
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (43 bp):
CGCCACTATAGATAGGGTTCTATAGCGGCGCTTATACAAAAAA
Found at i:51283959 original size:129 final size:129
Alignment explanation
Indices: 51283724--51284012 Score: 348
Period size: 129 Copynumber: 2.2 Consensus size: 129
51283714 GGGTTCTATA
* * * * *
51283724 GCGGCGCTTGTACAACAAACGCCACTAGAGAGAGGGTTCTTTTCCGGCGCTTATACAAGAAACGC
1 GCGGCGCTTATGCAAAAAACGCCACAATAGAGAGGGTTCTTTTCCGGCGCTTATACAAGAAACGC
* * * * *
51283789 CACTATAGATAGGGTTCTTCCCCGGCGCTTCTATAGGAAACGCCACGATAGATGAGGTTCTTTTC
66 CACGATAGATAGGGTTCTTCCCCGGCGCTTCTATAGAAAACGCCACGACAGACGAGGATC-TTTC
* * * *
51283854 -CGGCGCTTATGCAAGAAACGCCACGATAGATAGGGTTCTTTTGCGGCGCTTATACAAGAAACGC
1 GCGGCGCTTATGCAAAAAACGCCACAATAGAGAGGGTTCTTTTCCGGCGCTTATACAAGAAACGC
*** * * *
51283918 CACGATAGATAGGGTTCTTTTGCGGCGCTTAGTCTA-AAAACGCCACGACAGACGGGGATCTTTC
66 CACGATAGATAGGGTTCTTCCCCGGCGCTT-CTATAGAAAACGCCACGACAGACGAGGATCTTTC
*
51283982 GCGGCGCTTATGTAAAAAAACGCCACAATAG
1 GCGGCGCTTATG-CAAAAAACGCCACAATAG
51284013 GCTGTGTTTT
Statistics
Matches: 135, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
128 4 0.03
129 113 0.84
130 18 0.13
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (129 bp):
GCGGCGCTTATGCAAAAAACGCCACAATAGAGAGGGTTCTTTTCCGGCGCTTATACAAGAAACGC
CACGATAGATAGGGTTCTTCCCCGGCGCTTCTATAGAAAACGCCACGACAGACGAGGATCTTTC
Found at i:51284360 original size:21 final size:21
Alignment explanation
Indices: 51284335--51284388 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
51284325 GTTGTTCTGC
**
51284335 TTCCCTCGTTTTAGCCTCTAA
1 TTCCCTCGTTGCAGCCTCTAA
* *
51284356 TTCCCTCGCTGCAGCCTCTAC
1 TTCCCTCGTTGCAGCCTCTAA
*
51284377 TTCTCTCGTTGC
1 TTCCCTCGTTGC
51284389 TGCATCTGCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.09, C:0.39, G:0.13, T:0.39
Consensus pattern (21 bp):
TTCCCTCGTTGCAGCCTCTAA
Found at i:51284483 original size:21 final size:21
Alignment explanation
Indices: 51284441--51284486 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
51284431 TTGAACCTCA
* *
51284441 GCTTCTCTCACTGCTGCCTCT
1 GCTTCTCTCACTGCCGCATCT
**
51284462 GCTTCTCTCGTTGCCGCATCT
1 GCTTCTCTCACTGCCGCATCT
51284483 GCTT
1 GCTT
51284487 TAAGTTGTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.39, G:0.17, T:0.39
Consensus pattern (21 bp):
GCTTCTCTCACTGCCGCATCT
Found at i:51284547 original size:87 final size:87
Alignment explanation
Indices: 51284364--51284536 Score: 269
Period size: 87 Copynumber: 2.0 Consensus size: 87
51284354 AATTCCCTCG
* * *
51284364 CTGCAGCCTCTACTTCTCTCGTTGCTGCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTT
1 CTGCTGCCTCTGCTTCTCTCGTTGCCGCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTT
51284429 CGTTGAACCTCAGCTTCTCTCA
66 CGTTGAACCTCAGCTTCTCTCA
*
51284451 CTGCTGCCTCTGCTTCTCTCGTTGCCGCATCTGCTTTAAGTTG-TAGCTGGAGTTCTTCATATCT
1 CTGCTGCCTCTGCTTCTCTCGTTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CT
*
51284515 TT-TTTGAACCTCAGCTTCTCTC
64 TTCGTTGAACCTCAGCTTCTCTC
51284537 GATGTTGCCT
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
86 1 0.01
87 74 0.94
88 4 0.05
ACGTcount: A:0.13, C:0.30, G:0.17, T:0.40
Consensus pattern (87 bp):
CTGCTGCCTCTGCTTCTCTCGTTGCCGCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTT
CGTTGAACCTCAGCTTCTCTCA
Found at i:51287088 original size:35 final size:35
Alignment explanation
Indices: 51287041--51287156 Score: 124
Period size: 35 Copynumber: 3.5 Consensus size: 35
51287031 TTATCATAAA
*
51287041 TATGTATGTTATGTAAGTTGTAAGTTATTGTGTAT
1 TATGTAAGTTATGTAAGTTGTAAGTTATTGTGTAT
* *
51287076 TATGTAACTTATGTAAGTTATCAA---A---T-TA-
1 TATGTAAGTTATGTAAGTTGT-AAGTTATTGTGTAT
*
51287104 -ATGTATGTTATGTAAGTTGTAAGTTATTGTGTAT
1 TATGTAAGTTATGTAAGTTGTAAGTTATTGTGTAT
51287138 TATGTAAGTTATGTAAGTT
1 TATGTAAGTTATGTAAGTT
51287157 ATGTATTATG
Statistics
Matches: 64, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
26 2 0.03
27 17 0.27
29 3 0.05
30 1 0.02
32 1 0.02
33 3 0.05
35 35 0.55
36 2 0.03
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (35 bp):
TATGTAAGTTATGTAAGTTGTAAGTTATTGTGTAT
Found at i:51287151 original size:9 final size:9
Alignment explanation
Indices: 51286993--51287208 Score: 143
Period size: 9 Copynumber: 24.7 Consensus size: 9
51286983 GTCGACTAAA
51286993 TAAGTTATG
1 TAAGTTATG
*
51287002 TAAGTCATG
1 TAAGTTATG
*
51287011 T-A-TTAAG
1 TAAGTTATG
*
51287018 TAAGCTATG
1 TAAGTTATG
*
51287027 TAAGTTATCA
1 TAAGTTAT-G
*
51287037 TAA-ATATG
1 TAAGTTATG
*
51287045 TATGTTATG
1 TAAGTTATG
51287054 TAAG-T-TG
1 TAAGTTATG
51287061 TAAGTTATTG
1 TAAGTTA-TG
*
51287071 TGTA-TTATG
1 T-AAGTTATG
*
51287080 TAACTTATG
1 TAAGTTATG
51287089 TAAGTTAT-
1 TAAGTTATG
* *
51287097 CAAATTAATG
1 TAAGTT-ATG
*
51287107 TATGTTATG
1 TAAGTTATG
51287116 TAAG-T-TG
1 TAAGTTATG
51287123 TAAGTTATTG
1 TAAGTTA-TG
*
51287133 TGTA-TTATG
1 T-AAGTTATG
51287142 TAAGTTATG
1 TAAGTTATG
51287151 TAAGTTATG
1 TAAGTTATG
51287160 T-A-TTATG
1 TAAGTTATG
*
51287167 TAGGTTATG
1 TAAGTTATG
*
51287176 TAAGTTGTG
1 TAAGTTATG
*
51287185 TAA-TATATT
1 TAAGT-TATG
51287194 TAAGTTATG
1 TAAGTTATG
51287203 TAAGTT
1 TAAGTT
51287209 TTGTTTATAT
Statistics
Matches: 158, Mismatches: 29, Indels: 40
0.70 0.13 0.18
Matches are distributed among these distances:
7 22 0.14
8 16 0.10
9 99 0.63
10 19 0.12
11 2 0.01
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:51287187 original size:62 final size:61
Alignment explanation
Indices: 51287009--51287183 Score: 262
Period size: 62 Copynumber: 2.9 Consensus size: 61
51286999 ATGTAAGTCA
* * *
51287009 TGTATTAAGTAAGCTATGTAAGTTATCATAAATATGTATGTTATGTAAGTTGTAAGTTATTG
1 TGTATTATGTAAGTTATGTAAGTTATCAT-ATTATGTATGTTATGTAAGTTGTAAGTTATTG
* *
51287071 TGTATTATGTAACTTATGTAAGTTATCAAATTAATGTATGTTATGTAAGTTGTAAGTTATTG
1 TGTATTATGTAAGTTATGTAAGTTATCATATT-ATGTATGTTATGTAAGTTGTAAGTTATTG
* *
51287133 TGTATTATGTAAGTTATGTAAGTTAT-GTATTATGTAGGTTATGTAAGTTGT
1 TGTATTATGTAAGTTATGTAAGTTATCATATTATGTATGTTATGTAAGTTGT
51287184 GTAATATATT
Statistics
Matches: 103, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
60 19 0.18
61 5 0.05
62 79 0.77
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.46
Consensus pattern (61 bp):
TGTATTATGTAAGTTATGTAAGTTATCATATTATGTATGTTATGTAAGTTGTAAGTTATTG
Found at i:51287319 original size:13 final size:15
Alignment explanation
Indices: 51287300--51287340 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 15
51287290 CATATAAGTT
51287300 TATGTAAGTTATG-A
1 TATGTAAGTTATGTA
51287314 -ATGTAAGTTATGTA
1 TATGTAAGTTATGTA
51287328 TTATGTAAGTTAT
1 -TATGTAAGTTAT
51287341 TTAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
16 11 0.46
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (15 bp):
TATGTAAGTTATGTA
Found at i:51287335 original size:16 final size:16
Alignment explanation
Indices: 51287299--51287377 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
51287289 ACATATAAGT
51287299 TTATGTAAGTTATG-A
1 TTATGTAAGTTATGTA
51287314 --ATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
51287328 TTATGTAAGTTATTTAAA
1 TTATGTAAGTTATGT--A
* *
51287346 TTATTTAAGTTGTGTA
1 TTATGTAAGTTATGTA
* *
51287362 TTAAGTAAGTCATGTA
1 TTATGTAAGTTATGTA
51287378 GGCTATGTGT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 12 0.24
14 1 0.02
16 25 0.49
18 13 0.25
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:51287452 original size:21 final size:22
Alignment explanation
Indices: 51287428--51287478 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
51287418 ATTTTTCAAG
*
51287428 TATATATATAATTTTA-ATAAA
1 TATATATATAACTTTATATAAA
*
51287449 TATAT-TAAAACTTTATATAAA
1 TATATATATAACTTTATATAAA
51287470 TATATATAT
1 TATATATAT
51287479 CAAAGATGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 8 0.32
21 15 0.60
22 2 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TATATATATAACTTTATATAAA
Found at i:51289235 original size:11 final size:11
Alignment explanation
Indices: 51289219--51289245 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
51289209 TTACTCAACC
51289219 AGTAATATGAA
1 AGTAATATGAA
51289230 AGTAATATGAA
1 AGTAATATGAA
51289241 AGTAA
1 AGTAA
51289246 ATTAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.26
Consensus pattern (11 bp):
AGTAATATGAA
Found at i:51292214 original size:41 final size:41
Alignment explanation
Indices: 51292122--51292442 Score: 222
Period size: 41 Copynumber: 7.8 Consensus size: 41
51292112 AAGGTAATAA
* * * *
51292122 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAA-AGTCGGAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCACTAAAGA-TCCGAGC
* *
51292163 ATTA-CTGGCGCTCAGATAAAAATGTCACTAAAGATCCGAGC
1 ATTAGC-GGCGCTCAGATAAAAACGCCACTAAAGATCCGAGC
* * * * * **
51292204 ATTAGCGGCGCTTATACAAAATCGCCGCTAAATGCA-AAGAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCACTAAA-G-ATCCGAGC
* * *
51292246 ATTAGTGGCGCTCAGA-ATAAAACGCCACTAAAGATGCAAGC
1 ATTAGCGGCGCTCAGATA-AAAACGCCACTAAAGATCCGAGC
* * * * *
51292287 ATTAGCGGTGCTGAAATAAAATCGCCGCTAAAGA-CCAGAG-
1 ATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATCC-GAGC
* * * * * * *
51292327 ATATTGCGGCGTTCATATAAAAACGCCCCTAAAGATCAGGGA
1 AT-TAGCGGCGCTCAGATAAAAACGCCACTAAAGATCCGAGC
* * *
51292369 ATTAGCGGCGCTCAGATAAAAACGCTACTATAGATGCGAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATCCGAGC
* * * *
51292410 ATTAGTGGCGCACAAATAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTCAGATAAAAACGCCACTAAAG
51292443 GTTTAAAAAT
Statistics
Matches: 212, Mismatches: 56, Indels: 24
0.73 0.19 0.08
Matches are distributed among these distances:
40 5 0.02
41 170 0.80
42 36 0.17
43 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATCCGAGC
Found at i:51295756 original size:16 final size:16
Alignment explanation
Indices: 51295711--51295763 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
51295701 TTTTATTCGC
*
51295711 TTTTTGAAAAATAAATT
1 TTTTTGTAAAAT-AATT
*
51295728 TTTTTGTTGAAATAATT
1 TTTTTG-TAAAATAATT
*
51295745 TTTTTGTAAAATTATT
1 TTTTTGTAAAATAATT
51295761 TTT
1 TTT
51295764 CGAAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 11 0.35
17 16 0.52
18 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (16 bp):
TTTTTGTAAAATAATT
Found at i:51306881 original size:31 final size:29
Alignment explanation
Indices: 51306843--51306907 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
51306833 GTCAGTGATT
** *
51306843 TATAAAAATTGAATTAAATCAGAATTTTATG
1 TATAAAAA-TGAACAAAATCA-AAATTTATG
*
51306874 TATAAAAATGCACAAAATCAAAATTTATG
1 TATAAAAATGAACAAAATCAAAATTTATG
51306903 TATAA
1 TATAA
51306908 CATTGCATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 13 0.43
30 9 0.30
31 8 0.27
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (29 bp):
TATAAAAATGAACAAAATCAAAATTTATG
Found at i:51329893 original size:41 final size:41
Alignment explanation
Indices: 51329836--51329917 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
51329826 AAAGTCAGGG
51329836 AGTGACCACTTTCAGTTCACTAACCCAATTTCTTCTAATCC
1 AGTGACCACTTTCAGTTCACTAACCCAATTTCTTCTAATCC
51329877 AGTGACCACTTTCAGTTCACTAACCCAATTTCTTCTAATCC
1 AGTGACCACTTTCAGTTCACTAACCCAATTTCTTCTAATCC
51329918 GATTTTTGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (41 bp):
AGTGACCACTTTCAGTTCACTAACCCAATTTCTTCTAATCC
Found at i:51336892 original size:23 final size:23
Alignment explanation
Indices: 51336845--51336894 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
51336835 TTATTTAAAC
* *
51336845 AAATATTTATATTTATATTATTA
1 AAATATTCATATTTATACTATTA
*
51336868 AAATATTCATATTTTATACTATAA
1 AAATATTCATA-TTTATACTATTA
51336892 AAA
1 AAA
51336895 AATTATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATATTCATATTTATACTATTA
Found at i:51353774 original size:35 final size:35
Alignment explanation
Indices: 51353728--51353796 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
51353718 ATCTGGAATA
*
51353728 AAAACATCTCAAAGTTCGGATAACAACAAGATATG
1 AAAACATCTCAAAGTTCGAATAACAACAAGATATG
51353763 AAAACATCTCAAAGTTCGAATAACAACAAGATAT
1 AAAACATCTCAAAGTTCGAATAACAACAAGATAT
51353797 AAAGAAACTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (35 bp):
AAAACATCTCAAAGTTCGAATAACAACAAGATATG
Found at i:51356794 original size:41 final size:41
Alignment explanation
Indices: 51356732--51356875 Score: 207
Period size: 41 Copynumber: 3.5 Consensus size: 41
51356722 TGATTCGATA
* * * * *
51356732 CACCAGCATTAACCCTGCTAGATGTAAGGTTTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
51356773 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
* *
51356814 CACTGGCATTAAGCCTGCTAGACGGAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
* *
51356855 CACAGGAATTAAGCCTGCTAG
1 CACCGGCATTAAGCCTGCTAG
51356876 GCACAAAGCC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
Found at i:51357136 original size:62 final size:67
Alignment explanation
Indices: 51357013--51357187 Score: 182
Period size: 64 Copynumber: 2.7 Consensus size: 67
51357003 ACATTCGAAC
* * * * * * *
51357013 ATATATGTATAATTCAAAACTTTAACTTCAGCTCAAGGAATTTGTAACTAATATTTGAA-C-CAC
1 ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTAACTAATATTCGAACCACAC
51357076 AT
66 AT
*
51357078 ATGTATATAAAATTCAT-ACATTAAATTCAGCTCAA-GAACTTG-AA-TATATATTCGAACCACA
1 ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTAACTA-ATATTCGAACCACA
51357139 CAT
65 CAT
* * * **
51357142 ATATATATGAAATTCATAATATTAAGTTCAGCTCAATAAACTTGTA
1 ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTA
51357188 TCATACATTC
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
61 2 0.02
62 10 0.11
63 7 0.08
64 36 0.40
65 29 0.32
66 6 0.07
67 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (67 bp):
ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTAACTAATATTCGAACCACAC
AT
Found at i:51358626 original size:46 final size:47
Alignment explanation
Indices: 51358558--51358657 Score: 166
Period size: 46 Copynumber: 2.1 Consensus size: 47
51358548 AAACAAGATT
*
51358558 ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATG-TGG
1 ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATGTTGA
* *
51358604 ATATGTGTTGTGAAAGGTTAAGTGTGTGATGTGATTATATATGTTGA
1 ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATGTTGA
51358651 ATATGTG
1 ATATGTG
51358658 ACTAAATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
46 41 0.82
47 9 0.18
ACGTcount: A:0.28, C:0.01, G:0.30, T:0.41
Consensus pattern (47 bp):
ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATGTTGA
Found at i:51361671 original size:23 final size:23
Alignment explanation
Indices: 51361631--51361676 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
51361621 AAAAACCCTA
* *
51361631 ACTCTAGTCGCCGTTGCTCCTCT
1 ACTCTAGCCGCCGCTGCTCCTCT
*
51361654 ACTCTAGCCGTCGCTGCTCCTCT
1 ACTCTAGCCGCCGCTGCTCCTCT
51361677 GCTTCACCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.17, T:0.33
Consensus pattern (23 bp):
ACTCTAGCCGCCGCTGCTCCTCT
Found at i:51364137 original size:18 final size:19
Alignment explanation
Indices: 51364114--51364149 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51364104 AATTTAATTT
*
51364114 AAAAAT-AATCTTTTTATA
1 AAAAATCAAACTTTTTATA
51364132 AAAAATCAAACTTTTTAT
1 AAAAATCAAACTTTTTAT
51364150 TAAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAAATCAAACTTTTTATA
Found at i:51366363 original size:39 final size:39
Alignment explanation
Indices: 51366306--51366385 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
51366296 GTCCGTATCG
*
51366306 GTTTGTGGGTTAACCAGTCTGATGCCTTTCTTCAAATCA
1 GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
*
51366345 GTTTGTGGGTTAATCAGTCTGATGCCTCTCTTCAAATCA
1 GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
51366384 GT
1 GT
51366386 ACCCTAGCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (39 bp):
GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
Found at i:51368314 original size:50 final size:51
Alignment explanation
Indices: 51368260--51368364 Score: 160
Period size: 51 Copynumber: 2.1 Consensus size: 51
51368250 CTTATCCAAT
*
51368260 ATATTAT-TTCCATTAGC-AAATTTGTAGTCAGCCTTTCTGCAATGTTACAA
1 ATATTATCTT-CATTAGCAAAATTTGTAGTCAGCCTTTCTGAAATGTTACAA
* *
51368310 ATATTATCTTTATTAGCAAAATTTGTAGTCAGTCTTTCTGAAATGTTACAA
1 ATATTATCTTCATTAGCAAAATTTGTAGTCAGCCTTTCTGAAATGTTACAA
51368361 ATAT
1 ATAT
51368365 AGTTTGCGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
50 13 0.26
51 37 0.74
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.42
Consensus pattern (51 bp):
ATATTATCTTCATTAGCAAAATTTGTAGTCAGCCTTTCTGAAATGTTACAA
Found at i:51370052 original size:21 final size:22
Alignment explanation
Indices: 51370009--51370053 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
51369999 CTGTCTTATT
*
51370009 TTTTATTTTGCCATTTAGTTCTA
1 TTTTATTTT-CCATTTAGGTCTA
*
51370032 TTTTATTTT-CATTTTGGTCTA
1 TTTTATTTTCCATTTAGGTCTA
51370053 T
1 T
51370054 GGGCCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.16, C:0.11, G:0.09, T:0.64
Consensus pattern (22 bp):
TTTTATTTTCCATTTAGGTCTA
Found at i:51372417 original size:20 final size:21
Alignment explanation
Indices: 51372392--51372432 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51372382 TTATGGATTA
*
51372392 GGGATTT-TGGTTTAAGGGTT
1 GGGATTTAAGGTTTAAGGGTT
*
51372412 GGGATTTAAGGTTTAGGGGTT
1 GGGATTTAAGGTTTAAGGGTT
51372433 AAAGGGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.41
Consensus pattern (21 bp):
GGGATTTAAGGTTTAAGGGTT
Found at i:51372442 original size:15 final size:15
Alignment explanation
Indices: 51372400--51372456 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
51372390 TAGGGATTTT
51372400 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
* *
51372414 GATTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
*
51372429 GGTTAAAGGGTTAGG
1 GGTTTAAGGGTTAGG
*
51372444 GGTTTAGGGGTTA
1 GGTTTAAGGGTTA
51372457 TACGCGTTAG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
14 10 0.29
15 25 0.71
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:51372448 original size:23 final size:24
Alignment explanation
Indices: 51372421--51372471 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
51372411 TGGGATTTAA
*
51372421 GGTTTAGGGGTTA-AAGGGTTAGG
1 GGTTTAGGGGTTATAAGCGTTAGG
*
51372444 GGTTTAGGGGTTATACGCGTTAGG
1 GGTTTAGGGGTTATAAGCGTTAGG
51372468 GGTT
1 GGTT
51372472 AAAAGTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.18, C:0.04, G:0.45, T:0.33
Consensus pattern (24 bp):
GGTTTAGGGGTTATAAGCGTTAGG
Found at i:51372559 original size:284 final size:287
Alignment explanation
Indices: 51372004--51372871 Score: 940
Period size: 284 Copynumber: 3.0 Consensus size: 287
51371994 TATCACTATA
* * * * *
51372004 GTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTTAAGATTTAAGGCCAGTTTAGGAG-TTACT
1 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAAGCCGGTTTAGGAGATCA-T
* * * * *
51372068 ATTTTAAGGTTTAAGGAGTATGGGTTTAGAGATTATGGTTTAAGTGTTGAGATTTAAGGTTTAAG
65 ATTTTAAGGTTTAGGGAGTATGGATTTAGGGATTATGGATT-A--G--G-GA-TTAGGGTTTAAG
* * * * * **
51372133 GGTTAGAAGG-TT--AGGAGTTTAGGGGTTAGATGTTATAGG-TTAAGAGTTAGGGATTTAGGGT
123 GGTT-G--GGATTAAAGG-G-TTAAGGGTTAAACG---TGGGTTTAAGAGTTAGGGATTAAAAGT
* * *
51372194 TTAGGGATTCAGGGATC-GAGTTAGGATTTTGGGAGTTTAGATT-A--ATTTTTTTAATTTATAT
180 TTAAGGATTCAGGGGTCAG-GTTAGGGTTTT-GG-GTTTAGATTAATTATTTTTTTAATTTATAT
* *
51372255 TTTAAATATGTTCGTATATAATTGTAAAAGAGATAATAATAATTTT
242 TTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTT
* * * *
51372301 GTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTTAAGATTTAAAGTCGGTTTAGGAGTTCATA
1 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAAGCCGGTTTAGGAGATCATA
* * * *
51372366 TTTTAAGGTTTAGGGATTATGGA-TTAGGGATTTTGGTTTAAGGG-TT-GGGATTTAAGGTTTAG
66 TTTTAAGGTTTAGGGAGTATGGATTTAGGGATTATGGATT-AGGGATTAGGG-TTTAAGGGTT-G
* * * * * * *
51372428 GGGTTAAAGGGTTAGGGGTT-TA-G-GGGTTATACGCGTTAGGGGTTAAAAG-TTAAGGATTTAG
128 GGATTAAAGGGTTAAGGGTTAAACGTGGGTT-TAAGAGTTAGGGATTAAAAGTTTAAGGATTCAG
51372489 GGGTCAGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTT
192 GGGTCAGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTT
*
51372554 ATATAATTATAAAAGAGATAATAATAAATTT
257 ATATAATTGTAAAAGAGATAATAATAAATTT
*
51372585 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAGGAGATCATA
1 GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAAGCCGGTTTAGGAGATCATA
*
51372650 TTTTAAGGTTTAGGGAGTATGGATTTAGGGATTATGGATTAGGGATTATGGTTTAAGGGTTGGGA
66 TTTTAAGGTTTAGGGAGTATGGATTTAGGGATTATGGATTAGGGATTAGGGTTTAAGGGTTGGGA
* * * * *
51372715 TTTAAGGTTTAAGGGTTAAACGTTAGGGTTTAAGAGTTAGGGATTTAAGGTTTAGGGATTCAGGG
131 TTAAAGGGTTAAGGGTTAAACG-T-GGGTTTAAGAGTTAGGGATTAAAAGTTTAAGGATTCAGGG
* ** * * *
51372780 GTCGGGTTAAAGTTTTGAGTTTAGATTAATTATTATTTTGATTTATATTTTAAATATGTTCTTAT
194 GTCAGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTAT
51372845 ATAATTGTAAAAGAGATAATAATAAAT
259 ATAATTGTAAAAGAGATAATAATAAAT
51372872 CAAATATATT
Statistics
Matches: 496, Mismatches: 55, Indels: 48
0.83 0.09 0.08
Matches are distributed among these distances:
281 9 0.02
282 5 0.01
283 25 0.05
284 178 0.36
285 26 0.05
286 4 0.01
287 3 0.01
288 28 0.06
289 116 0.23
290 3 0.01
291 1 0.00
292 1 0.00
294 1 0.00
296 16 0.03
297 78 0.16
298 2 0.00
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (287 bp):
GTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAAGCCGGTTTAGGAGATCATA
TTTTAAGGTTTAGGGAGTATGGATTTAGGGATTATGGATTAGGGATTAGGGTTTAAGGGTTGGGA
TTAAAGGGTTAAGGGTTAAACGTGGGTTTAAGAGTTAGGGATTAAAAGTTTAAGGATTCAGGGGT
CAGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATAT
AATTGTAAAAGAGATAATAATAAATTT
Found at i:51372693 original size:14 final size:15
Alignment explanation
Indices: 51372658--51372704 Score: 71
Period size: 14 Copynumber: 3.3 Consensus size: 15
51372648 TATTTTAAGG
*
51372658 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
51372673 TTTAGGGATTATGGA
1 TTTAGGGATTATGGA
51372688 -TTAGGGATTATGG-
1 TTTAGGGATTATGGA
51372701 TTTA
1 TTTA
51372705 AGGGTTGGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 16 0.53
15 14 0.47
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:51372725 original size:21 final size:21
Alignment explanation
Indices: 51372651--51372768 Score: 71
Period size: 21 Copynumber: 5.5 Consensus size: 21
51372641 GAGATCATAT
*
51372651 TTTAAGGTTTAGGGAGTAT-GGA
1 TTTAAGGTTTAAGG-GT-TGGGA
* * * *
51372673 TTTAGGGATTATGGATTAGGGA
1 TTTAAGGTTTAAGGGTT-GGGA
*
51372695 -TTATGGTTTAAGGGTTGGGA
1 TTTAAGGTTTAAGGGTTGGGA
**
51372715 TTTAAGGTTTAAGGGTT-AAA
1 TTTAAGGTTTAAGGGTTGGGA
* * *
51372735 CGTTAGGGTTTAAGAGTTAGGGA
1 -TTTAAGGTTTAAGGGTT-GGGA
51372758 TTTAAGGTTTA
1 TTTAAGGTTTA
51372769 GGGATTCAGG
Statistics
Matches: 72, Mismatches: 18, Indels: 12
0.71 0.18 0.12
Matches are distributed among these distances:
20 6 0.08
21 42 0.58
22 23 0.32
23 1 0.01
ACGTcount: A:0.27, C:0.01, G:0.34, T:0.38
Consensus pattern (21 bp):
TTTAAGGTTTAAGGGTTGGGA
Found at i:51372763 original size:15 final size:14
Alignment explanation
Indices: 51372701--51372774 Score: 64
Period size: 15 Copynumber: 5.1 Consensus size: 14
51372691 GGGATTATGG
51372701 TTTAAGGGTT-GGGA
1 TTTAA-GGTTAGGGA
51372715 TTTAAGGTTTAAGGG-
1 TTTAAGG-TT-AGGGA
* *
51372730 TTAAACGTTAGGG-
1 TTTAAGGTTAGGGA
51372743 TTTAAGAGTTAGGGA
1 TTTAAG-GTTAGGGA
51372758 TTTAAGGTTTAGGGA
1 TTTAAGG-TTAGGGA
51372773 TT
1 TT
51372775 CAGGGGTCGG
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
13 10 0.20
14 17 0.34
15 20 0.40
16 3 0.06
ACGTcount: A:0.27, C:0.01, G:0.34, T:0.38
Consensus pattern (14 bp):
TTTAAGGTTAGGGA
Found at i:51383024 original size:85 final size:86
Alignment explanation
Indices: 51382876--51383228 Score: 349
Period size: 85 Copynumber: 4.1 Consensus size: 86
51382866 GATATGTTTT
* * * * * *
51382876 TAGCGG-AGTTTGTGTGAAAAGCGCAGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTAAGAAAAA
1 TAGCGGCA-TTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGT-GGAAAAA
* * *
51382939 GAGTCGCT-AAAGATC-TGTTCTA
64 GCGCCGCTAAAAG-TCATGATCTA
* * *
51382961 TAGCGGCATTTGTGAGAAAAGCGCCGCTAAAAGTGATGATCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGC
*
51383026 GCCGCTAAAAGTCATGACCTA
66 GCCGCTAAAAGTCATGATCTA
* * * * * * *
51383047 TAGTGGCGTTTATGGGGAAAGCGCCGTTAAAAGTCATGATCTATAGCGACGTTTGTGG-ATAAGC
1 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGC
* *
51383111 GCCACTAAAAGTCATGATCTT
66 GCCGCTAAAAGTCATGATCTA
* * * * * * *
51383132 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGACCTTTAGCTGTGTTTGTGGAAAAATC
1 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGC
* *
51383197 GCCGCTAAAGGTCATGA-CTTT
66 GCCGCTAAAAGTCATGATC-TA
51383218 TAGCGGCATTT
1 TAGCGGCATTT
51383229 ATTTCTAAAA
Statistics
Matches: 224, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
85 114 0.51
86 110 0.49
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (86 bp):
TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGC
GCCGCTAAAAGTCATGATCTA
Found at i:51383035 original size:43 final size:43
Alignment explanation
Indices: 51382876--51383213 Score: 351
Period size: 43 Copynumber: 7.9 Consensus size: 43
51382866 GATATGTTTT
* * * * * *
51382876 TAGCGGAGTTTGTGTGAAAAGCGCAGCTAAAGGT-TTGTTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * * *
51382918 TAGCGGCGTTTGTAAGAAAAAGAGTCGCT-AAAGATC-TGTTCTA
1 TAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAAG-TCATGATCTA
* * *
51382961 TAGCGGCATTTGTGAGAAAAGCGCCGCTAAAAGTGATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
*
51383004 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * *
51383047 TAGTGGCGTTTATGGGGAAAGCGCCGTTAAAAGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * *
51383090 TAGCGACGTTTGT-GGATAAGCGCCACTAAAAGTCATGATCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * *
51383132 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * * *
51383175 TAGCTGTGTTTGTGGAAAAATCGCCGCTAAAGGTCATGA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGA
51383214 CTTTTAGCGG
Statistics
Matches: 248, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
42 62 0.25
43 186 0.75
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
Found at i:51383211 original size:128 final size:129
Alignment explanation
Indices: 51382876--51383213 Score: 362
Period size: 128 Copynumber: 2.6 Consensus size: 129
51382866 GATATGTTTT
* * * * ** * * *
51382876 TAGCGGAGTTTGTGTGAAAAGCG-CAGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTAAGAAAAA
1 TAGCGGCGTTTGTGGGAAAAGCGCCA-CTAAAAGTCATGACCTATAGTGGCGTTTAT-GGAAAAA
* * * * * * *
51382939 GAGTCGCTAAAGATC-TGTTCTATAGCGGCATTTGTGAGAAAAGCGCCGCTAAAAGTGATGATCT
64 GCGCCGCTAAAGGTCATGATCTATAGCGACATTTGTGAGAAAAGCGCCACTAAAAGTCATGATCT
51383003 A
129 A
* **
51383004 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTATAGTGGCGTTTATGGGGAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGACCTATAGTGGCGTTTATGGAAAAAGC
* * * * *
51383069 GCCGTTAAAAGTCATGATCTATAGCGACGTTTGTG-GATAAGCGCCACTAAAAGTCATGATCTT
66 GCCGCTAAAGGTCATGATCTATAGCGACATTTGTGAGAAAAGCGCCACTAAAAGTCATGATCTA
* * * *
51383132 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGACCTTTAGCT-GTGTTTGTGGAAAAAT
1 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGACCTATAG-TGGCGTTTATGGAAAAAG
51383196 CGCCGCTAAAGGTCATGA
65 CGCCGCTAAAGGTCATGA
51383214 CTTTTAGCGG
Statistics
Matches: 173, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
128 137 0.79
129 36 0.21
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (129 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAAGTCATGACCTATAGTGGCGTTTATGGAAAAAGC
GCCGCTAAAGGTCATGATCTATAGCGACATTTGTGAGAAAAGCGCCACTAAAAGTCATGATCTA
Found at i:51394693 original size:44 final size:43
Alignment explanation
Indices: 51394628--51394811 Score: 206
Period size: 45 Copynumber: 4.1 Consensus size: 43
51394618 AGCTACAACA
* * * *
51394628 ACAAATCTTATTTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCT
1 ACAAAT-TTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCT
*
51394672 ACAAATTTGATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
1 ACAAATTT-ATCTCCCTAAAGTTGCAGTGGAGT-AGATTGAAGCT
* * *
51394717 ACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAAGATTGAAGCT
1 ACAAAT-TTATCTCCCTAAAGTTGCAGTGGAG-TAGATTGAAGCT
* * * *
51394762 GCAAATATAATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCT
1 ACAAAT-TTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCT
51394806 ACAAAT
1 ACAAAT
51394812 CCTATACCTC
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
43 2 0.02
44 44 0.36
45 73 0.60
46 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (43 bp):
ACAAATTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCT
Found at i:51394730 original size:45 final size:45
Alignment explanation
Indices: 51394628--51395024 Score: 256
Period size: 44 Copynumber: 8.7 Consensus size: 45
51394618 AGCTACAACA
* * *
51394628 ACAAATCTTATTTCCTTGAAGTTGCAGTGGAGT-AGATTAAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
51394672 ACAAAT-TTGATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
1 ACAAATCTT-ATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * * *
51394717 ACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * * * * *
51394762 GCAAATATAATCTCCCTAAAGTTGTAGTGGAG-CAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * * * ** *
51394806 ACAAATCCTATAC-CTCTAAAGTTGCATTGG-GTTGGATT-AATTCT
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGTAAGATTGAA-GCT
* * *
51394850 ACCATAGTGAGTCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAA-AGTTACAAACT
1 A-CA-A---A-TCTTATCTCCCTGAAGTTGCAGTGG---AG--TAAGA-TT-GAAGCT
* *
51394907 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAG-CAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
** ** ** *
51394951 ATGAATCTTATCTTTCTGAAGTTGCAGCAGAGT-AGATTGAAACT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * *
51394995 ACAATTCCTATAC-CCCTAAAGTTGCAGTGG
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGG
51395025 GTTAGAATAA
Statistics
Matches: 274, Mismatches: 54, Indels: 50
0.72 0.14 0.13
Matches are distributed among these distances:
43 5 0.02
44 125 0.46
45 81 0.30
46 4 0.01
48 2 0.01
49 1 0.00
50 19 0.07
51 23 0.08
52 1 0.00
54 1 0.00
55 2 0.01
56 5 0.02
57 3 0.01
58 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (45 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
Found at i:51394745 original size:89 final size:89
Alignment explanation
Indices: 51394628--51394812 Score: 255
Period size: 89 Copynumber: 2.1 Consensus size: 89
51394618 AGCTACAACA
* * * * * * *
51394628 ACAAATCTTATTTCCTTGAAGTTGCAGTGGAG-TAGATTAAAGCTACAAATTTGATCTCCCTGAA
1 ACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAAGATTAAAGCTACAAATATAATCTCCCTAAA
51394692 GTTGCAGTGGAGTAAGATTGAAGCT
66 GTTGCAGTGGAG-AAGATTGAAGCT
* *
51394717 ACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAAGATTGAAGCTGCAAATATAATCTCCCTAAA
1 ACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAAGATTAAAGCTACAAATATAATCTCCCTAAA
* *
51394782 GTTGTAGTGGAGCAGATTGAAGCT
66 GTTGCAGTGGAGAAGATTGAAGCT
51394806 ACAAATC
1 ACAAATC
51394813 CTATACCTCT
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
89 47 0.56
90 37 0.44
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (89 bp):
ACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAAGATTAAAGCTACAAATATAATCTCCCTAAA
GTTGCAGTGGAGAAGATTGAAGCT
Found at i:51394825 original size:44 final size:44
Alignment explanation
Indices: 51394646--51394831 Score: 191
Period size: 45 Copynumber: 4.2 Consensus size: 44
51394636 TATTTCCTTG
* * *
51394646 AAGTTGCAGTGGAGTAGATTAAAGCTACAAATTTGAT-CTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGCTACAAATTT-ATACTCCCTA
* *
51394690 AAGTTGCAGTGGAGTAAGATTGAAGCTACAAATCTTAT-CTCCTTA
1 AAGTTGCAGTGGAG-CAGATTGAAGCTACAAAT-TTATACTCCCTA
* * *
51394735 AAGTTACAGTGGAGCAAGATTGAAGCTGCAAATATA-ATCTCCCTA
1 AAGTTGCAGTGGAGC-AGATTGAAGCTACAAATTTATA-CTCCCTA
* * *
51394780 AAGTTGTAGTGGAGCAGATTGAAGCTACAAATCCTATAC-CTCTA
1 AAGTTGCAGTGGAGCAGATTGAAGCTACAAAT-TTATACTCCCTA
51394824 AAGTTGCA
1 AAGTTGCA
51394832 TTGGGTTGGA
Statistics
Matches: 120, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
44 43 0.36
45 74 0.62
46 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (44 bp):
AAGTTGCAGTGGAGCAGATTGAAGCTACAAATTTATACTCCCTA
Found at i:51408565 original size:24 final size:24
Alignment explanation
Indices: 51408526--51408581 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
51408516 TTTATGTCCT
* *
51408526 AAAATTTCAGTGGATTGAACCTTG
1 AAAATTACAGTGGATTAAACCTTG
*
51408550 AAGATTACAGTGGATTAAACCTTG
1 AAAATTACAGTGGATTAAACCTTG
51408574 AAAATTAC
1 AAAATTAC
51408582 GGCCGGGGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (24 bp):
AAAATTACAGTGGATTAAACCTTG
Found at i:51409000 original size:88 final size:88
Alignment explanation
Indices: 51408891--51409174 Score: 442
Period size: 88 Copynumber: 3.2 Consensus size: 88
51408881 ATGGATTGAA
* *
51408891 GAAGATTGTAGATATTGTCTTCCTGTACTGGCAGTGAAGCAGATTGAAAACACCAGCCTTATCTC
1 GAAGATTGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
*
51408956 CCTGAGCAGCAGTGGAGTAGGTT
66 CTTGAGCAGCAGTGGAGTAGGTT
* * * *
51408979 GAAAATTGTAGATCTTGTCTTCTTGTACTGGCAATGAAGCAGATCGAAAACACCAGCTTTATCTC
1 GAAGATTGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
* * *
51409044 CTTAAGCAGCAGTAGAGTCGGTT
66 CTTGAGCAGCAGTGGAGTAGGTT
*
51409067 GAAGATTGTAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
1 GAAGATTGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
*
51409132 CTTGAGCAGTAGTGGAGTAGGTT
66 CTTGAGCAGCAGTGGAGTAGGTT
* *
51409155 GAAGATTGCAGATCCTGTCT
1 GAAGATTGTAGATCTTGTCT
51409175 CCCTAAGTAG
Statistics
Matches: 174, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 174 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (88 bp):
GAAGATTGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
CTTGAGCAGCAGTGGAGTAGGTT
Found at i:51409282 original size:132 final size:132
Alignment explanation
Indices: 51409117--51409749 Score: 930
Period size: 132 Copynumber: 4.8 Consensus size: 132
51409107 AGATCGAAAA
* *
51409117 CACCAG-CCTTATCTCCTTGAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAA
1 CACCAGTCC-TATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAA
* * *
51409181 GTAGTAGTGGAGCAGATCAAATACGGTGAATCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTA
65 GCAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
51409246 AGC
130 AGC
* * *
51409249 CACCAGTCCTATCTCCCTGAACAGCAGTAGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAG
1 CACCAGTCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAG
* *
51409314 AAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
51409379 GC
131 GC
* * * * *
51409381 CACCAGTCCTATCTCCTTGAGCAGCACTGGAGTAAGTTAAAGATTGCAGATCATGTCTCCCTAAG
1 CACCAGTCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAG
* * * *
51409446 CAGTAGTGGAGCAGATCAAAGACGGTGAATATTATCTTTCTAAGATAGTAGGGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
*
51409511 GT
131 GC
* * **
51409513 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCAATAAG
1 CACCAGTCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAG
* * *
51409578 CAGTAGTGGAGTAGATCAAAGACGGTGAATCTTATCTTCCCAATGTAGTAGGGAAGTAGATTTAA
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
51409643 GC
131 GC
* * *
51409645 CACCAGTCCTATTTCTTTGAGCTA-CAGTGGAGTAAGTTGAAGATTGTAGATCCTGTCTCCCTAA
1 CACCAGTCCTATCTCCTTGAGC-AGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAA
* * *
51409709 GTAGTAGTGGAGCAGATCAAAGACAGCGAATCTTAT-TTCCC
65 GCAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCC
51409750 TAGCTTTGCA
Statistics
Matches: 449, Mismatches: 50, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
131 5 0.01
132 441 0.98
133 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
CACCAGTCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAG
CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
GC
Found at i:51410173 original size:88 final size:88
Alignment explanation
Indices: 51410026--51410186 Score: 207
Period size: 88 Copynumber: 1.8 Consensus size: 88
51410016 AAAGGCTACA
*
51410026 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCACAAACCTTATATTCCTGAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCACAAACCTTATATCCCTGAAGTTA
51410091 CAGTGGAGCAGGTTGAAGATGCC
66 CAGTGGAGCAGGTTGAAGATGCC
* * * * * * * * *
51410114 AATCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTCAAGCTATTAATCC-TATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCA-CAAACCTTATATCCCTGAAGTT
*
51410178 GCAGTGGAG
65 ACAGTGGAG
51410187 TGGATTAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
88 57 0.93
89 4 0.07
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCACAAACCTTATATCCCTGAAGTTA
CAGTGGAGCAGGTTGAAGATGCC
Found at i:51413823 original size:22 final size:22
Alignment explanation
Indices: 51413781--51413824 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51413771 GATATAATAT
* * *
51413781 GATATGTTATGATACGTTATGA
1 GATATGATATGATAAGATATGA
51413803 GATATGATATGATAAGATATGA
1 GATATGATATGATAAGATATGA
51413825 AAATGTGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (22 bp):
GATATGATATGATAAGATATGA
Found at i:51414443 original size:30 final size:30
Alignment explanation
Indices: 51414407--51414463 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
51414397 TGGTCAAAGT
* *
51414407 TTGGGTTTGGTTTTCGGCCCATTAATTAAA
1 TTGGGTTTGGTTTCCGGCCCATGAATTAAA
*
51414437 TTGGGTTTTGTTTCCGGCCCATGAATT
1 TTGGGTTTGGTTTCCGGCCCATGAATT
51414464 CAGTTCAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.44
Consensus pattern (30 bp):
TTGGGTTTGGTTTCCGGCCCATGAATTAAA
Found at i:51417525 original size:21 final size:21
Alignment explanation
Indices: 51417501--51417542 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51417491 GATGGCTTGA
* * *
51417501 AAATCAAATAATATTTTAACC
1 AAATAAAATAAAATTTAAACC
51417522 AAATAAAATAAAATTTAAACC
1 AAATAAAATAAAATTTAAACC
51417543 CCTGAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAAAATAAAATTTAAACC
Found at i:51417587 original size:21 final size:19
Alignment explanation
Indices: 51417547--51417591 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
51417537 TAAACCCCTG
*
51417547 AATTTTAATTAAACCTTAA
1 AATTTTAATTAAACCATAA
*
51417566 AATTTTAACTTTAAATCATAA
1 AATTTTAA--TTAAACCATAA
51417587 AATTT
1 AATTT
51417592 AAATCTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
21 14 0.64
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (19 bp):
AATTTTAATTAAACCATAA
Found at i:51423160 original size:94 final size:94
Alignment explanation
Indices: 51422995--51423188 Score: 381
Period size: 94 Copynumber: 2.1 Consensus size: 94
51422985 GACCAATTCA
51422995 TACC-AATATATATAACATATATGAACACATTAATTACATGATCTAAATTCAACCATTCAAGTCA
1 TACCAAATATATATAACATATATGAACACATTAATTACATGATCTAAATTCAACCATTCAAGTCA
51423059 CAAGGATCAAGTTTATGCACTAATCTATT
66 CAAGGATCAAGTTTATGCACTAATCTATT
51423088 TACCAAATATATATAACATATATGAACACATTAATTACATGATCTAAATTCAACCATTCAAGTCA
1 TACCAAATATATATAACATATATGAACACATTAATTACATGATCTAAATTCAACCATTCAAGTCA
51423153 CAAGGATCAAGTTTATGCACTAATCTATT
66 CAAGGATCAAGTTTATGCACTAATCTATT
51423182 TACCAAA
1 TACCAAA
51423189 CTGTATACAC
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
93 4 0.04
94 96 0.96
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (94 bp):
TACCAAATATATATAACATATATGAACACATTAATTACATGATCTAAATTCAACCATTCAAGTCA
CAAGGATCAAGTTTATGCACTAATCTATT
Found at i:51424985 original size:14 final size:15
Alignment explanation
Indices: 51424949--51424994 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 15
51424939 CAAAATCGGG
*
51424949 TTAAAAATTATTTAA
1 TTAAAAATTAATTAA
51424964 TTAAAAAATTAATTAA
1 TT-AAAAATTAATTAA
51424980 TT-AAAATTAATTAA
1 TTAAAAATTAATTAA
51424994 T
1 T
51424995 AATATTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 13 0.45
15 2 0.07
16 14 0.48
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTAAAAATTAATTAA
Found at i:51428195 original size:41 final size:41
Alignment explanation
Indices: 51428160--51428360 Score: 235
Period size: 41 Copynumber: 4.9 Consensus size: 41
51428150 GTGAAATTGT
*
51428160 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
* *
51428201 TCGGACTATACGTCCAGCAAGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
* * *
51428242 TCAGATTATATGTCCAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
* * **
51428283 TCAGGCTATA-GGCCTAGCAGGCTAAGTGCCGGTGAACGGAA
1 TCAGACTATACGTCC-AGCAGGCTAAGTGCCGGTGAATTGAA
* * * * *
51428324 TTAGACTATAAGTCTATCAGG-TGAAGTGCCAGTGAAT
1 TCAGACTATACGTCCAGCAGGCT-AAGTGCCGGTGAAT
51428361 CTGTTTAAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
40 4 0.03
41 132 0.96
42 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
Found at i:51428591 original size:37 final size:36
Alignment explanation
Indices: 51428547--51428635 Score: 139
Period size: 37 Copynumber: 2.5 Consensus size: 36
51428537 TTTAAATGTG
51428547 TATATGTATGCATTCGGCATAGGTGGATATAAGTGTA
1 TATATGTATGCATTCGGCATAGGTGGATATAAGTG-A
*
51428584 TATATGTATGCATTCGGCATAGGTGGGTATAAGTGA
1 TATATGTATGCATTCGGCATAGGTGGATATAAGTGA
51428620 -ATATG--TGCATTCGGCA
1 TATATGTATGCATTCGGCA
51428636 CTTATAGTTG
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
33 11 0.22
35 5 0.10
36 1 0.02
37 34 0.67
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (36 bp):
TATATGTATGCATTCGGCATAGGTGGATATAAGTGA
Found at i:51435531 original size:41 final size:41
Alignment explanation
Indices: 51435496--51435696 Score: 217
Period size: 41 Copynumber: 4.9 Consensus size: 41
51435486 GTGAAATTGT
** *
51435496 TCAGACTATACGTCTTGCAGGCTAAGTGCTGGTGAATTGAA
1 TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
* *
51435537 TCGGACTATACGTCCAGCAAGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
* * *
51435578 TCAGATTATATGTCCAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
* * **
51435619 TCAGGCTATA-GGCCTAGCAGGCTAAGTGCCGGTGAACGGAA
1 TCAGACTATACGTCC-AGCAGGCTAAGTGCCGGTGAATTGAA
* * * * *
51435660 TTAGACTATAAGTCTATCAGG-TGAAGTGCCAGTGAAT
1 TCAGACTATACGTCCAGCAGGCT-AAGTGCCGGTGAAT
51435697 CTGTTTAAAT
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 4 0.03
41 130 0.96
42 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (41 bp):
TCAGACTATACGTCCAGCAGGCTAAGTGCCGGTGAATTGAA
Found at i:51435927 original size:37 final size:36
Alignment explanation
Indices: 51435883--51435971 Score: 139
Period size: 37 Copynumber: 2.5 Consensus size: 36
51435873 TTTAAATGTG
51435883 TATATGTATGCATTCGGCATAGGTGGATATAAGTGTA
1 TATATGTATGCATTCGGCATAGGTGGATATAAGTG-A
*
51435920 TATATGTATGCATTCGGCATAGGTGGGTATAAGTGA
1 TATATGTATGCATTCGGCATAGGTGGATATAAGTGA
51435956 -ATATG--TGCATTCGGCA
1 TATATGTATGCATTCGGCA
51435972 CTTATAGTTG
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
33 11 0.22
35 5 0.10
36 1 0.02
37 34 0.67
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (36 bp):
TATATGTATGCATTCGGCATAGGTGGATATAAGTGA
Found at i:51438036 original size:6 final size:6
Alignment explanation
Indices: 51438025--51438058 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
51438015 TGCAGTAATC
*
51438025 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTT ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTT
51438059 AATGAAGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
ATTTTA
Found at i:51438765 original size:20 final size:20
Alignment explanation
Indices: 51438740--51438779 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51438730 TGTTGCACTG
51438740 CTTTACTATTATGCACAGGT
1 CTTTACTATTATGCACAGGT
51438760 CTTTACTATTATGCACAGGT
1 CTTTACTATTATGCACAGGT
51438780 TCTTCTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (20 bp):
CTTTACTATTATGCACAGGT
Found at i:51450018 original size:21 final size:20
Alignment explanation
Indices: 51449994--51450036 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
51449984 TAACTAGTTT
51449994 AATTGAAAAGAT-TATTAAAAA
1 AATTGAAAA-ATATA-TAAAAA
*
51450015 AATTTAAAAATATATAAAAA
1 AATTGAAAAATATATAAAAA
51450035 AA
1 AA
51450037 CAGAAAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (20 bp):
AATTGAAAAATATATAAAAA
Found at i:51459381 original size:19 final size:19
Alignment explanation
Indices: 51459359--51459409 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
51459349 GGGTCTTTTT
*
51459359 ATGAAATTTAATGCATATG-
1 ATGAAATGTAATGC-TATGA
51459378 ATGAAATGTAATGCTATGA
1 ATGAAATGTAATGCTATGA
51459397 ATGAAATG-AATGC
1 ATGAAATGTAATGC
51459410 AAAAAGGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.30
19 21 0.70
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (19 bp):
ATGAAATGTAATGCTATGA
Found at i:51461223 original size:9 final size:8
Alignment explanation
Indices: 51461188--51461234 Score: 51
Period size: 9 Copynumber: 5.8 Consensus size: 8
51461178 TAAAATGATA
51461188 AATAATA-
1 AATAATAT
*
51461195 AATAATAG
1 AATAATAT
*
51461203 AATACTAT
1 AATAATAT
51461211 AATAATGAT
1 AATAAT-AT
51461220 AATAATATT
1 AATAATA-T
51461229 AATAAT
1 AATAAT
51461235 GTAAAATAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 7 0.21
8 12 0.35
9 15 0.44
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:51472588 original size:3 final size:3
Alignment explanation
Indices: 51472582--51472634 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
51472572 CGACGACGAC
51472582 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
51472630 GAT GA
1 GAT GA
51472635 ATGACTGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:51473117 original size:13 final size:13
Alignment explanation
Indices: 51473099--51473141 Score: 58
Period size: 11 Copynumber: 3.6 Consensus size: 13
51473089 CAAGAACTGT
51473099 TTCTGTAGGAATA
1 TTCTGTAGGAATA
51473112 TTCTGTA--AATA
1 TTCTGTAGGAATA
51473123 TT-T-TAGGAATA
1 TTCTGTAGGAATA
51473134 TTCTGTAG
1 TTCTGTAG
51473142 ATATTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 2 0.08
10 1 0.04
11 12 0.46
12 1 0.04
13 10 0.38
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (13 bp):
TTCTGTAGGAATA
Found at i:51473129 original size:22 final size:22
Alignment explanation
Indices: 51473104--51473146 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
51473094 ACTGTTTCTG
51473104 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
*
51473126 TAGGAATATTCTGTAGATATT
1 TAGGAATATTCTGTAAATATT
51473147 CTTTTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:51476238 original size:12 final size:12
Alignment explanation
Indices: 51476221--51476245 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51476211 TTTCCCGTAA
51476221 ATGTGATAAGTC
1 ATGTGATAAGTC
51476233 ATGTGATAAGTC
1 ATGTGATAAGTC
51476245 A
1 A
51476246 ACACATGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
ATGTGATAAGTC
Found at i:51486089 original size:2 final size:2
Alignment explanation
Indices: 51486082--51486125 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
51486072 GTATATGTTA
* * * *
51486082 AG AG AG AG AG AG AG AG GG AG GG AG GG AG GG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
51486124 AG
1 AG
51486126 CAAATTTTCT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (2 bp):
AG
Found at i:51490342 original size:112 final size:112
Alignment explanation
Indices: 51490145--51490374 Score: 442
Period size: 112 Copynumber: 2.1 Consensus size: 112
51490135 TATCAACAGC
*
51490145 AAGAACTTGAATCTAGCCCAGTACAAAGGTTTGCAGCCATTATTAAGGGGAAAAAAGATAAAAGG
1 AAGAACTTGAATCTAGCCCAGTACAAAGGTTTGCAGCCATTATTAAGGGAAAAAAAGATAAAAGG
51490210 GGAAAAGACTTAAATGCAAGATGTAGTTTCCACAGTTTTCAGTATGA
66 GGAAAAGACTTAAATGCAAGATGTAGTTTCCACAGTTTTCAGTATGA
51490257 AAGAACTTGAATCTAGCCCAGTACAAAGGTTTGCAGCCATTATTAAGGGAAAAAAAGATAAAAGG
1 AAGAACTTGAATCTAGCCCAGTACAAAGGTTTGCAGCCATTATTAAGGGAAAAAAAGATAAAAGG
51490322 GGAAAAGACTTAAATGCAAGATGTAGTTTCCACAGTTTTCAGTATGA
66 GGAAAAGACTTAAATGCAAGATGTAGTTTCCACAGTTTTCAGTATGA
*
51490369 AGGAAC
1 AAGAAC
51490375 AACTAACTAG
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 116 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.23
Consensus pattern (112 bp):
AAGAACTTGAATCTAGCCCAGTACAAAGGTTTGCAGCCATTATTAAGGGAAAAAAAGATAAAAGG
GGAAAAGACTTAAATGCAAGATGTAGTTTCCACAGTTTTCAGTATGA
Found at i:51497140 original size:152 final size:153
Alignment explanation
Indices: 51496860--51497168 Score: 575
Period size: 152 Copynumber: 2.0 Consensus size: 153
51496850 CAAGTCCGGG
51496860 TAACGAAGTTCATCATTACCAACCAATTCTCGCTATCAAGTTAAATACTTGAGGTTTAAGGTTTA
1 TAACGAAGTTCATCATT---AACCAATTCTCGCTATCAAGTTAAATACTTGAGGTTTAAGGTTTA
*
51496925 AAGAAATGGTAGAATTTCATGAAAACTGATAAATGCCAGGGAGATAACTGAGAATCTGTGAGTTT
63 AAGAAATGGTAGAATTTCATGAAAACTGATAAATGCCAGGGAGATAACAGAGAATCTGTGAGTTT
51496990 TAATAACTAGTGACTAGAATGTTGTT
128 TAATAACTAGTGACTAGAATGTTGTT
51497016 TAACGAAGTTCATCATT-ACCAATTCTCGCTATCAAGTTAAATACTTGAGGTTTAAGGTTTAAAG
1 TAACGAAGTTCATCATTAACCAATTCTCGCTATCAAGTTAAATACTTGAGGTTTAAGGTTTAAAG
51497080 AAATGGTAGAATTTCATGAAAACTGATAAATGCCAGGGAGATAACAGAGAATCTGTGAGTTTTAA
66 AAATGGTAGAATTTCATGAAAACTGATAAATGCCAGGGAGATAACAGAGAATCTGTGAGTTTTAA
51497145 TAACTAGTGACTAGAATGTTGTT
131 TAACTAGTGACTAGAATGTTGTT
51497168 T
1 T
51497169 TGCAGGTTAC
Statistics
Matches: 152, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
152 135 0.89
156 17 0.11
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (153 bp):
TAACGAAGTTCATCATTAACCAATTCTCGCTATCAAGTTAAATACTTGAGGTTTAAGGTTTAAAG
AAATGGTAGAATTTCATGAAAACTGATAAATGCCAGGGAGATAACAGAGAATCTGTGAGTTTTAA
TAACTAGTGACTAGAATGTTGTT
Found at i:51497409 original size:26 final size:26
Alignment explanation
Indices: 51497363--51497413 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
51497353 TAGAAGTACA
*
51497363 TAATTTTAGTTGCTTATTCTACAAGT
1 TAATTTTAGTTGCTTAGTCTACAAGT
*
51497389 TAATTTTAGCTT-TTTAGTCTACAAG
1 TAATTTTAG-TTGCTTAGTCTACAAG
51497414 AATAAAGCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (26 bp):
TAATTTTAGTTGCTTAGTCTACAAGT
Found at i:51502627 original size:102 final size:102
Alignment explanation
Indices: 51502451--51502640 Score: 254
Period size: 102 Copynumber: 1.9 Consensus size: 102
51502441 CTGGTTTCAC
* * * * * * * *
51502451 TATCATCTAATTTCTTTAAATTATTAAACTAGAATTCTTTTCATTTTCAAAGAGATACAGAAGCA
1 TATCATCTAATTCCTTAAAATCATTAAACTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
*
51502516 TAAATACGGCTAAATGGCAAGAACACGACCGCTAGTT
66 TAAATACGGCTAAATGACAAGAACACGACCGCTAGTT
* * * **
51502553 TATCATCTAATTCCTTAAAATCATTAAGCTAAAAATCTTTCCATTGTCAATGAGATAAAGATGTT
1 TATCATCTAATTCCTTAAAATCATTAAACTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
51502618 TAAATACGGCTAAATGACAAGAA
66 TAAATACGGCTAAATGACAAGAA
51502641 TGTTCATGTA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
102 74 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (102 bp):
TATCATCTAATTCCTTAAAATCATTAAACTAAAAATCTTTCCATTGTCAAAGAGATAAAGAAGCA
TAAATACGGCTAAATGACAAGAACACGACCGCTAGTT
Found at i:51509207 original size:16 final size:16
Alignment explanation
Indices: 51509186--51509223 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
51509176 TTTGGTTCGC
51509186 TGTAATGGAATAGAA-G
1 TGTAATGGAATA-AAGG
51509202 TGTAATGGAATAAAGG
1 TGTAATGGAATAAAGG
51509218 TGTAAT
1 TGTAAT
51509224 AGGTAATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAAAGG
Found at i:51509287 original size:44 final size:46
Alignment explanation
Indices: 51509205--51509297 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 46
51509195 ATAGAAGTGT
*
51509205 AATGGAATAAAGGTGTAATAGGTAATTCTTCTGTTTGGTTGAATGG
1 AATGGAATAAAGGCGTAATAGGTAATTCTTCTGTTTGGTTGAATGG
* *
51509251 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAAAGGCGTAATAGGTAATTCTTCTGTTTGGTTGAATGG
51509295 AAT
1 AAT
51509298 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 24 0.55
45 3 0.07
46 17 0.39
ACGTcount: A:0.29, C:0.04, G:0.30, T:0.37
Consensus pattern (46 bp):
AATGGAATAAAGGCGTAATAGGTAATTCTTCTGTTTGGTTGAATGG
Found at i:51509293 original size:39 final size:44
Alignment explanation
Indices: 51509205--51509310 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 44
51509195 ATAGAAGTGT
*
51509205 AATGGAATAAAGGTGTAATAGGTAATTCTTCTGTTTGGTTGAATGG
1 AATGGAATAGAGGTGTAATAGGTAATTCTTCTGTTTGGTT--ATGG
* *
51509251 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAGGTGTAATAGGTAATTCTTCTGTTTGGTTATGG
51509290 AATGGAATAGAGGTGTAATAG
1 AATGGAATAGAGGTGTAATAG
51509311 CATAAGAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
39 19 0.35
40 2 0.04
43 1 0.02
44 13 0.24
45 3 0.05
46 17 0.31
ACGTcount: A:0.30, C:0.04, G:0.31, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGGTGTAATAGGTAATTCTTCTGTTTGGTTATGG
Found at i:51509478 original size:18 final size:17
Alignment explanation
Indices: 51509455--51509491 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
51509445 AATTATTATT
51509455 AAATATAT-A-TTAATTA
1 AAATATATAATTTAA-TA
51509471 AAATATATAATTTAATA
1 AAATATATAATTTAATA
51509488 AAAT
1 AAAT
51509492 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 7 0.37
18 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATATAATTTAATA
Found at i:51509485 original size:14 final size:15
Alignment explanation
Indices: 51509448--51509487 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
51509438 TTAACATAAT
51509448 TATT-ATTAAATATA
1 TATTAATTAAATATA
51509462 TATTAATTAAA-ATA
1 TATTAATTAAATATA
*
51509476 TA-TAATTTAATA
1 TATTAATTAAATA
51509488 AAATTCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 7 0.30
14 10 0.43
15 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAATTAAATATA
Found at i:51509503 original size:15 final size:16
Alignment explanation
Indices: 51509483--51509512 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51509473 ATATATAATT
51509483 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
51509498 TAATAAATATTCTTA
1 TAATAAATATTCTTA
51509513 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:51509581 original size:120 final size:120
Alignment explanation
Indices: 51509437--51509794 Score: 662
Period size: 120 Copynumber: 3.0 Consensus size: 120
51509427 TTAATCATAT
* *
51509437 TTTAACATAATTATTATTAAATATATATTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
51509502 AAATATTCTTATATGAATTTACTAAAATCATAATATATGGTACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
* *
51509557 TTTGAAATAATTATTATTAAATATATTTTAAGTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
51509622 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
51509677 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAGTAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
51509742 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAT
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAT
51509795 TTTTAATTAA
Statistics
Matches: 230, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 230 1.00
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:51509596 original size:59 final size:59
Alignment explanation
Indices: 51509533--51509718 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
51509523 CTAAAATCAT
* * *
51509533 AATATATGGTACTATAAAATATAATTTGAAATAATTATTATTAAATATATTTTAAGTAA
1 AATATATGATACTATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAAATAA
* * * * * *
51509592 AATATATAAT-TTAATAAAAT-T--CTTAATAATAAATATTCTTATATGA-ATTTACTAAAATCA
1 AATATATGATACT-ATAAAATATAATTTAA-AATAATTATTATTAAAT-ATATTT--T-AAAT-A
*
51509652 T
59 A
*
51509653 AATATATGATACTATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAAATAA
51509712 AATATAT
1 AATATAT
51509719 AATTTAGTAA
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
56 3 0.03
57 18 0.19
58 3 0.03
59 24 0.25
60 6 0.06
61 18 0.19
62 3 0.03
63 18 0.19
64 4 0.04
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (59 bp):
AATATATGATACTATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAAATAA
Found at i:51509604 original size:18 final size:17
Alignment explanation
Indices: 51509577--51509611 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51509567 TTATTATTAA
*
51509577 ATATATTTTAAGTAAAAT
1 ATATAATTTAA-TAAAAT
51509595 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51509612 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51509623 original size:15 final size:16
Alignment explanation
Indices: 51509603--51509632 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51509593 ATATATAATT
51509603 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
51509618 TAATAAATATTCTTA
1 TAATAAATATTCTTA
51509633 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:51509716 original size:16 final size:16
Alignment explanation
Indices: 51509678--51509718 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51509668 AAAATATAAT
51509678 TTAAAATA-ATTATTA
1 TTAAAATATATTATTA
51509693 TT-AAATATATT-TTAA
1 TTAAAATATATTATT-A
51509708 TTAAAATATAT
1 TTAAAATATAT
51509719 AATTTAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAAAATATATTATTA
Found at i:51509730 original size:59 final size:55
Alignment explanation
Indices: 51509436--51509748 Score: 193
Period size: 57 Copynumber: 5.3 Consensus size: 55
51509426 TTTAATCATA
* *
51509436 TTTTAACATAATTATTATTAAATATATATTAATTAAAATATATAATTTAATAAAAT
1 TTTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTT-ATAAAAT
* * * * *
51509492 TCTTAATAATAAATATTCTT--ATATGAATTT-ACTAAAATCATAATATATGGTACTATAAAAT
1 TTTTAA-AATAATTATTATTAAATAT-ATTTTAATTAAAAT-AT-ATA-AT--T--TATAAAAT
* *
51509553 ATAATTTGAAATAATTATTATTAAATATATTTTAAGTAAAATATATAATTTAATAAAAT
1 -T--TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTT-ATAAAAT
* * * * * * * *
51509612 TCTTAATAATAAATATTCTTATATGA-ATTTACTAAAATCATAATATATGATACTATAAAAT
1 TTTTAA-AATAATTATTATTAAAT-ATATTT--T--AATTAAAATATATAAT-TTATAAAAT
51509673 ATAATTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAGTAAAAT
1 -T--TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA-TAAAAT
* *
51509732 TCTTAATAATAAATATT
1 TTTTAA-AATAATTATT
51509749 CTTATATGAA
Statistics
Matches: 195, Mismatches: 33, Indels: 57
0.68 0.12 0.20
Matches are distributed among these distances:
55 11 0.06
56 17 0.09
57 40 0.21
58 8 0.04
59 27 0.14
60 2 0.01
61 27 0.14
62 7 0.04
63 32 0.16
64 13 0.07
65 11 0.06
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (55 bp):
TTTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAAAAT
Found at i:51509791 original size:61 final size:61
Alignment explanation
Indices: 51509485--51509792 Score: 268
Period size: 61 Copynumber: 5.1 Consensus size: 61
51509475 ATATAATTTA
*
51509485 ATAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGGTACT
1 ATAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * * * * * *
51509546 ATAAAATATAATTTGA-AATAATTATTATTAAATAT-ATTTTAAGTAAAAT-AT-ATA-AT-TTA
1 ATAAAAT-T--CTTAATAATAAATATTCTT--ATATGAATTT-ACTAAAATCATAATATATGATA
51509605 --
60 CT
51509605 ATAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * * * * * * *
51509666 ATAAAATATAATTTAA-AATAATTATTATTAAAT-ATATTT--T--AATTAAAATATATAAT-TT
1 ATAAAAT-T--CTTAATAATAAATATTCTTATATGA-ATTTACTAAAATCATAATATATGATACT
51509724 AGTAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 A-TAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
51509786 ATAAAAT
1 ATAAAAT
51509793 ATTTTTAATT
Statistics
Matches: 191, Mismatches: 30, Indels: 52
0.70 0.11 0.19
Matches are distributed among these distances:
55 11 0.06
56 13 0.07
57 32 0.17
58 7 0.04
59 29 0.15
61 36 0.19
62 7 0.04
63 32 0.17
64 13 0.07
65 11 0.06
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (61 bp):
ATAAAATTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
Found at i:51510922 original size:13 final size:13
Alignment explanation
Indices: 51510904--51510928 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51510894 GCTGTCTCAG
51510904 TTTTTGTGCCCAC
1 TTTTTGTGCCCAC
51510917 TTTTTGTGCCCA
1 TTTTTGTGCCCA
51510929 ACCTAGCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (13 bp):
TTTTTGTGCCCAC
Found at i:51514222 original size:16 final size:16
Alignment explanation
Indices: 51514198--51514267 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
51514188 TGGTTCGCTA
*
51514198 TAATGGAATAGAGGCG
1 TAATAGAATAGAGGCG
*
51514214 TAATAGAATAGAGGCT
1 TAATAGAATAGAGGCG
* *
51514230 TAATGGAATAGAGACG
1 TAATAGAATAGAGGCG
51514246 TAATAGAATAGAGGCG
1 TAATAGAATAGAGGCG
51514262 TAATAG
1 TAATAG
51514268 CAATTCAATT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.43, C:0.06, G:0.30, T:0.21
Consensus pattern (16 bp):
TAATAGAATAGAGGCG
Found at i:51514239 original size:32 final size:32
Alignment explanation
Indices: 51514198--51514265 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
51514188 TGGTTCGCTA
* *
51514198 TAATGGAATAGAGGCGTAATAGAATAGAGGCT
1 TAATGGAATAGAGACGTAATAGAATAGAGGCG
51514230 TAATGGAATAGAGACGTAATAGAATAGAGGCG
1 TAATGGAATAGAGACGTAATAGAATAGAGGCG
51514262 TAAT
1 TAAT
51514266 AGCAATTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.43, C:0.06, G:0.29, T:0.22
Consensus pattern (32 bp):
TAATGGAATAGAGACGTAATAGAATAGAGGCG
Found at i:51514306 original size:45 final size:44
Alignment explanation
Indices: 51514245--51514333 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 44
51514235 GAATAGAGAC
51514245 GTAATAGAATAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAAT
1 GTAATAGAATAGAGGCGTAATAG-AATTC-ATGTGTTTGGTTGAAT
* *
51514290 GTAATAGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAAT
1 GTAATAGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAAT
51514334 TGAATGGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
43 1 0.02
44 17 0.41
45 23 0.56
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.36
Consensus pattern (44 bp):
GTAATAGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAAT
Found at i:51514490 original size:35 final size:35
Alignment explanation
Indices: 51514425--51514513 Score: 92
Period size: 35 Copynumber: 2.5 Consensus size: 35
51514415 ATTGTTTTGT
51514425 TATAAA-ATTTTAATAAGATTATTAAAATAATATAA
1 TATAAATATTTTAATAAGATTATTAAAATAAT-TAA
* * * *
51514460 TATAAATATTTTAATCATATT-TTAACATAATTAT
1 TATAAATATTTTAATAAGATTATTAAAATAATTAA
51514494 TATTAAATATAATTTAATAA
1 TA-TAAATAT--TTTAATAA
51514514 AAAATATATA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
34 4 0.09
35 22 0.49
36 12 0.27
37 7 0.16
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (35 bp):
TATAAATATTTTAATAAGATTATTAAAATAATTAA
Found at i:51518282 original size:14 final size:14
Alignment explanation
Indices: 51518263--51518289 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51518253 AGCAGAAATC
51518263 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
51518277 TGGAGAAAAGAAA
1 TGGAGAAAAGAAA
51518290 GAAATGTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.30, T:0.07
Consensus pattern (14 bp):
TGGAGAAAAGAAAA
Found at i:51526429 original size:67 final size:67
Alignment explanation
Indices: 51526318--51526444 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
51526308 AGGAACATCC
* *
51526318 AAATACATACCTAGATCCCTTACCTTTGTAAATCTAAGATTGTTACATAAATTAGTTGATAACAC
1 AAATACATACCTAGATCCCTTACCTTTGTAAATCCAAGACTGTTACATAAATTAGTTGATAACAC
51526383 CT
66 CT
*
51526385 AAATACATACCTAGATCCCTTGCCTTTGTAAATCCAAGACTGTTACATAAATTAGTTGAT
1 AAATACATACCTAGATCCCTTACCTTTGTAAATCCAAGACTGTTACATAAATTAGTTGAT
51526445 TCTTCCTATG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (67 bp):
AAATACATACCTAGATCCCTTACCTTTGTAAATCCAAGACTGTTACATAAATTAGTTGATAACAC
CT
Found at i:51530767 original size:120 final size:120
Alignment explanation
Indices: 51530601--51531068 Score: 893
Period size: 120 Copynumber: 3.9 Consensus size: 120
51530591 ACTAGCATCA
*
51530601 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAATTATTAAGAATTTTTTTA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
51530666 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
66 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
51530721 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
51530786 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
66 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
51530841 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
51530906 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
66 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
* *
51530961 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
51531026 AATTATATA-TTGTAATTAAAATATATTTAATAATAATTATGTT
66 AATTATATAGTT-TAATTAAAATATATTTAATAATAATTATGTT
51531069 TAAATATGAT
Statistics
Matches: 344, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
119 2 0.01
120 342 0.99
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (120 bp):
ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTA
AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
Found at i:51531265 original size:44 final size:45
Alignment explanation
Indices: 51531216--51531306 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
51531206 ACCTCTATTC
* * *
51531216 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
51531260 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
51531305 CA
1 CA
51531307 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:51531308 original size:16 final size:16
Alignment explanation
Indices: 51531287--51531355 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
51531277 GATTAGCTAT
51531287 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51531303 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
51531320 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
51531336 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
51531352 TACA
1 TACA
51531356 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:51531329 original size:33 final size:32
Alignment explanation
Indices: 51531287--51531355 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
51531277 GATTAGCTAT
51531287 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
51531320 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
51531352 TACA
1 TACA
51531356 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:51534081 original size:22 final size:22
Alignment explanation
Indices: 51534022--51534078 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 22
51534012 ATCTTCAAGT
51534022 ATATGCAATCTT---AGATATG
1 ATATGCAATCTTAGAAGATATG
51534041 ATATGCAATCTTAGAAGATATG
1 ATATGCAATCTTAGAAGATATG
* *
51534063 ATTTTGTAATCTTAGA
1 A-TATGCAATCTTAGA
51534079 GATTTAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 12 0.38
22 8 0.25
23 12 0.38
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATATGCAATCTTAGAAGATATG
Found at i:51535929 original size:14 final size:14
Alignment explanation
Indices: 51535910--51535949 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
51535900 TTGATTGCCA
51535910 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
51535924 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
51535938 GGAAAATGTTTT
1 GTAAAATGTTTT
51535950 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:51535958 original size:20 final size:20
Alignment explanation
Indices: 51535933--51535972 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51535923 CGTAAAATGA
*
51535933 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
51535953 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
51535973 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:51535962 original size:34 final size:35
Alignment explanation
Indices: 51535918--51535984 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
51535908 CAGTAAAATG
*
51535918 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
51535952 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
51535985 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:51535988 original size:14 final size:15
Alignment explanation
Indices: 51535912--51535988 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
51535902 GATTGCCAGT
* *
51535912 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
51535926 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
51535940 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
51535960 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
51535975 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
51535989 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:51536164 original size:22 final size:25
Alignment explanation
Indices: 51536138--51536192 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
51536128 TGATTTATTT
51536138 ATATATAAATAA-A-TCAA-ATTAA
1 ATATATAAATAATACTCAATATTAA
51536160 ATATAT-AATAATACTCAATTATTAA
1 ATATATAAATAATACTCAA-TATTAA
51536185 A-ATATAAA
1 ATATATAAA
51536193 AGCATTGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
21 5 0.18
22 7 0.25
23 4 0.14
24 4 0.14
25 8 0.29
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATACTCAATATTAA
Found at i:51538303 original size:6 final size:6
Alignment explanation
Indices: 51538294--51538336 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
51538284 TCAAGGATAA
* * * *
51538294 GGGAAG GGGAAA GGGAAG GGGAAT GGGAAG GGAAAG GGAAAG G
1 GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG G
51538337 AAAATTTTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.40, C:0.00, G:0.58, T:0.02
Consensus pattern (6 bp):
GGGAAG
Found at i:51538309 original size:12 final size:12
Alignment explanation
Indices: 51538292--51538333 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
51538282 TGTCAAGGAT
51538292 AAGGGAAGGGGA
1 AAGGGAAGGGGA
51538304 AAGGGAAGGGGA
1 AAGGGAAGGGGA
*
51538316 ATGGGAA-GGGA
1 AAGGGAAGGGGA
51538327 AAGGGAA
1 AAGGGAA
51538334 AGGAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.43, C:0.00, G:0.55, T:0.02
Consensus pattern (12 bp):
AAGGGAAGGGGA
Found at i:51538312 original size:23 final size:23
Alignment explanation
Indices: 51538286--51538333 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
51538276 ATCAGGTGTC
*
51538286 AAGGATAA-GGGAAGGGGAAAGGG
1 AAGGAGAATGGGAA-GGGAAAGGG
*
51538309 AAGGGGAATGGGAAGGGAAAGGG
1 AAGGAGAATGGGAAGGGAAAGGG
51538332 AA
1 AA
51538334 AGGAAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.44, C:0.00, G:0.52, T:0.04
Consensus pattern (23 bp):
AAGGAGAATGGGAAGGGAAAGGG
Found at i:51538315 original size:18 final size:17
Alignment explanation
Indices: 51538292--51538333 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
51538282 TGTCAAGGAT
51538292 AAGGGAAGGGGAAAGGGA
1 AAGGGAAGGGG-AAGGGA
* *
51538310 AGGGGAATGGGAAGGGA
1 AAGGGAAGGGGAAGGGA
51538327 AAGGGAA
1 AAGGGAA
51538334 AGGAAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.55, T:0.02
Consensus pattern (17 bp):
AAGGGAAGGGGAAGGGA
Found at i:51552672 original size:4 final size:4
Alignment explanation
Indices: 51552658--51552708 Score: 93
Period size: 4 Copynumber: 12.8 Consensus size: 4
51552648 ATCTTTTCAT
*
51552658 GTTA ATTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA
1 GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA
51552706 GTT
1 GTT
51552709 GATAAGTTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
GTTA
Found at i:51554763 original size:13 final size:13
Alignment explanation
Indices: 51554745--51554779 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
51554735 TTCTTTGCTT
51554745 TTGAAAAGTACTG
1 TTGAAAAGTACTG
* *
51554758 TTGAAAAGTGCTT
1 TTGAAAAGTACTG
51554771 TTGAAAAGT
1 TTGAAAAGT
51554780 TTGGTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (13 bp):
TTGAAAAGTACTG
Found at i:51562746 original size:60 final size:60
Alignment explanation
Indices: 51562625--51562747 Score: 167
Period size: 60 Copynumber: 2.1 Consensus size: 60
51562615 GCTTGAGTTC
* * * *
51562625 TTTTTATCCAAGTTAAGTCTTGAACTTGGCAATTGTTCCCACATTGAGATCTAAAACTTT
1 TTTTTATCCAAGTTAAGTCCTGAACTTGACAAATGTTCCCACATTGAGACCTAAAACTTT
** **
51562685 TTTTTATCCAAGTTAAGTCCTGAACTTGACAAATGTTCCCATGTTGAG-CCTTCAACTTT
1 TTTTTATCCAAGTTAAGTCCTGAACTTGACAAATGTTCCCACATTGAGACCTAAAACTTT
51562744 TTTT
1 TTTT
51562748 ATTATTATCT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 12 0.22
60 43 0.78
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (60 bp):
TTTTTATCCAAGTTAAGTCCTGAACTTGACAAATGTTCCCACATTGAGACCTAAAACTTT
Found at i:51563259 original size:12 final size:12
Alignment explanation
Indices: 51563237--51563267 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
51563227 GATCCAGTTC
51563237 ATATAAATTATTA
1 ATAT-AATTATTA
51563250 ATATAATTATTA
1 ATATAATTATTA
51563262 ATATAA
1 ATATAA
51563268 CATCATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATAATTATTA
Found at i:51572288 original size:26 final size:28
Alignment explanation
Indices: 51572259--51572320 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
51572249 GAACTTATTT
51572259 AATT-ATT-TTTAATAATATATG-GACTA
1 AATTGATTATTTAATAATATA-GAGACTA
51572285 AATTGATTCATTTAATAATATAGAGACTA
1 AATTGATT-ATTTAATAATATAGAGACTA
*
51572314 ATTTGAT
1 AATTGAT
51572321 CCAGTCTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 4 0.13
27 3 0.10
28 1 0.03
29 23 0.74
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.44
Consensus pattern (28 bp):
AATTGATTATTTAATAATATAGAGACTA
Found at i:51573944 original size:18 final size:18
Alignment explanation
Indices: 51573921--51573958 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
51573911 TCCAAGACCG
51573921 GCGGTTTGCGAGACTTAA
1 GCGGTTTGCGAGACTTAA
*
51573939 GCGGTTTGTGAGACTTAA
1 GCGGTTTGCGAGACTTAA
51573957 GC
1 GC
51573959 TCTAGCCCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (18 bp):
GCGGTTTGCGAGACTTAA
Found at i:51584841 original size:64 final size:64
Alignment explanation
Indices: 51584726--51584855 Score: 170
Period size: 64 Copynumber: 2.0 Consensus size: 64
51584716 CGAGCATCCC
* * * * *
51584726 GATCGGTAGTAATCCTGCATGTGTTGCGTACATACCGCAACTATTTGTGAGCGTCCTGTTATAT
1 GATCGATAGTAATCCTACATGTGTTGCGGACATACCACAACTATTTATGAGCGTCCTGTTATAT
* ** * *
51584790 GATCGATAGTGATCCTACATGTGTTGCGGACATACCACAGTTCTTTATGAGCTTCCTGTTATAT
1 GATCGATAGTAATCCTACATGTGTTGCGGACATACCACAACTATTTATGAGCGTCCTGTTATAT
51584854 GA
1 GA
51584856 CTCTCTAGAG
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (64 bp):
GATCGATAGTAATCCTACATGTGTTGCGGACATACCACAACTATTTATGAGCGTCCTGTTATAT
Done.