Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 194 of 218
Found at i:57395743 original size:17 final size:17
Alignment explanation
Indices: 57395723--57395911 Score: 114
Period size: 17 Copynumber: 10.8 Consensus size: 17
57395713 AACGAAAGTT
57395723 TTTTTTAAACACGAGAA
1 TTTTTTAAACACGAGAA
*
57395740 TTTTTGAAAACACGAGAA
1 TTTTT-TAAACACGAGAA
* *
57395758 -TTTGTAAACACGAAAA
1 TTTTTTAAACACGAGAA
** *
57395774 TTTTAGAAACACGAAAA
1 TTTTTTAAACACGAGAA
* *
57395791 TTTTTAGAAAAACGA-AA
1 TTTTT-TAAACACGAGAA
* *
57395808 TTTTCTTAAAACACGACATT
1 TTTT-TT-AAACACGAGA-A
*
57395828 TTTTTTGAAACACGGGAA
1 TTTTTT-AAACACGAGAA
* *
57395846 TTTTTAAAACA-GGGAAA
1 TTTTTTAAACACGAG-AA
** *
57395863 TTTTAGAAACACGAAAA
1 TTTTTTAAACACGAGAA
* * *
57395880 TTTTTAAAACACGACAT
1 TTTTTTAAACACGAGAA
57395897 TTTTTTGAAACACGA
1 TTTTTT-AAACACGA
57395912 TTTAAAAAAC
Statistics
Matches: 137, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
16 13 0.09
17 68 0.50
18 41 0.30
19 11 0.08
20 4 0.03
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (17 bp):
TTTTTTAAACACGAGAA
Found at i:57395743 original size:18 final size:17
Alignment explanation
Indices: 57395705--57395911 Score: 109
Period size: 18 Copynumber: 11.8 Consensus size: 17
57395695 GCAGTATTTC
57395705 TTTTTTAAA-ACGAAAGTT
1 TTTTTTAAACACGAAA--T
57395723 TTTTTTAAACACGAGAAT
1 TTTTTTAAACACGA-AAT
**
57395741 TTTTGAAAACACGAGAA-
1 TTTTTTAAACACGA-AAT
* *
57395758 -TTTGTAAACACGAAAA
1 TTTTTTAAACACGAAAT
**
57395774 TTTTAGAAACACGAAAAT
1 TTTTTTAAACACG-AAAT
** *
57395792 TTTTAGAAAAACGAAAT
1 TTTTTTAAACACGAAAT
* *
57395809 TTTCTTAAAACACGACATT
1 TTT-TTTAAACACGA-AAT
*
57395828 TTTTTTGAAACACGGGAA-
1 TTTTTT-AAACAC-GAAAT
* *
57395846 TTTTTAAAACAGGGAAA-
1 TTTTTTAAACA-CGAAAT
** *
57395863 TTTTAGAAACACGAAAA
1 TTTTTTAAACACGAAAT
* *
57395880 TTTTTAAAACACGACAT
1 TTTTTTAAACACGAAAT
57395897 TTTTTTGAAACACGA
1 TTTTTT-AAACACGA
57395912 TTTAAAAAAC
Statistics
Matches: 152, Mismatches: 25, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.01
16 16 0.11
17 52 0.34
18 63 0.41
19 16 0.11
20 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (17 bp):
TTTTTTAAACACGAAAT
Found at i:57395850 original size:106 final size:104
Alignment explanation
Indices: 57395721--57395911 Score: 253
Period size: 106 Copynumber: 1.8 Consensus size: 104
57395711 AAAACGAAAG
57395721 TTTTTTTTAAACACGAGAATTTTTGAAAACACGAG-AATTTGT-AAACACGAAAA-TTTTAGAAA
1 TTTTTTTTAAACACGAGAATTTTT-AAAACA-GAGAAATTT-TAAAACACGAAAATTTTTA-AAA
57395783 CACGAAAATTTTTAGAAAAACGAAATTTTCTTAAAACACGACA
62 CACGAAAATTTTTAGAAAAACGAAATTTTCTTAAAACACGACA
* *
57395826 TTTTTTTTGAAACACGGGAATTTTTAAAACAGGGAAATTTTAGAAACACGAAAATTTTTAAAACA
1 TTTTTTTT-AAACACGAGAATTTTTAAAACAGAGAAATTTTA-AAACACGAAAATTTTTAAAACA
* * * *
57395891 CGACATTTTTTTGAAACACGA
64 CGAAAATTTTTAGAAAAACGA
57395912 TTTAAAAAAC
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
104 3 0.04
105 19 0.25
106 48 0.64
107 5 0.07
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (104 bp):
TTTTTTTTAAACACGAGAATTTTTAAAACAGAGAAATTTTAAAACACGAAAATTTTTAAAACACG
AAAATTTTTAGAAAAACGAAATTTTCTTAAAACACGACA
Found at i:57396087 original size:55 final size:53
Alignment explanation
Indices: 57396012--57396155 Score: 171
Period size: 55 Copynumber: 2.7 Consensus size: 53
57396002 AACACTGGAG
* * * **
57396012 TTTTTGAAAACACGAGAATTTGTGAAACACGAAAATTTGTGAAAACACGTAAATT
1 TTTTTGAAAACACGAAAATTTTTGAAACACGAAAATTTCTGAAAACAC--AAAGA
** * * *
57396067 TTTTTTTAAACACGAAAATTTTTGAAACGCCAGAATTTCTGAAAACACAAAGA
1 TTTTTGAAAACACGAAAATTTTTGAAACACGAAAATTTCTGAAAACACAAAGA
57396120 TTTTTGAAAACACGAAAATTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAATTTTTG-AAACACGAAAA
57396156 CACAAAATTT
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
53 25 0.34
54 8 0.11
55 40 0.55
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.29
Consensus pattern (53 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACGAAAATTTCTGAAAACACAAAGA
Found at i:57396153 original size:18 final size:18
Alignment explanation
Indices: 57395729--57396155 Score: 206
Period size: 18 Copynumber: 24.6 Consensus size: 18
57395719 AGTTTTTTTT
*
57395729 AAACACGAGAATTTTTGA
1 AAACACGAAAATTTTTGA
* *
57395747 AAACACGAGAA--TTTGT
1 AAACACGAAAATTTTTGA
*
57395763 AAACACGAAAATTTTAG-
1 AAACACGAAAATTTTTGA
57395780 AAACACGAAAATTTTTAGA
1 AAACACGAAAATTTTT-GA
*
57395799 AAA-ACG-AAATTTTCTTA
1 AAACACGAAAATTTT-TGA
**
57395816 AAACACGACATTTTTTTTG-
1 AAACACGA-A-AATTTTTGA
**
57395835 AAACACGGGAATTTTT-A
1 AAACACGAAAATTTTTGA
* * *
57395852 AAACAGGGAAATTTTAG-
1 AAACACGAAAATTTTTGA
57395869 AAACACGAAAATTTTT-A
1 AAACACGAAAATTTTTGA
**
57395886 AAACACGACATTTTTTTG-
1 AAACACGA-AAATTTTTGA
57395904 AAACACG---A--TTT-A
1 AAACACGAAAATTTTTGA
* *
57395916 AAAAAC-AAAA--ATTG-
1 AAACACGAAAATTTTTGA
** *
57395930 AAATGCGAGAATATTTTG-
1 AAACACGAAAAT-TTTTGA
** **
57395948 AAACACGAATTTTTTTTTT
1 AAACACGAA-AATTTTTGA
* *
57395967 AAACGCGAGAATTTTTGA
1 AAACACGAAAATTTTTGA
* * *
57395985 AAACATGGAAA-CTTTG-
1 AAACACGAAAATTTTTGA
* *
57396001 AAACACTG-GAGTTTTTGA
1 AAACAC-GAAAATTTTTGA
* *
57396019 AAACACGAGAATTTGTG-
1 AAACACGAAAATTTTTGA
*
57396036 AAACACGAAAATTTGTGA
1 AAACACGAAAATTTTTGA
* **
57396054 AAACACGTAAATTTTTTTTT
1 AAACACG-AAA-ATTTTTGA
57396074 AAACACGAAAATTTTTG-
1 AAACACGAAAATTTTTGA
* * * *
57396091 AAACGCCAGAATTTCTGA
1 AAACACGAAAATTTTTGA
57396109 AAACAC-AAAGATTTTTGA
1 AAACACGAAA-ATTTTTGA
57396127 AAACACGAAAATTTTTGA
1 AAACACGAAAATTTTTGA
57396145 AAACACGAAAA
1 AAACACGAAAA
57396156 CACAAAATTT
Statistics
Matches: 310, Mismatches: 64, Indels: 70
0.70 0.14 0.16
Matches are distributed among these distances:
12 8 0.03
14 7 0.02
15 3 0.01
16 20 0.06
17 106 0.34
18 122 0.39
19 27 0.09
20 13 0.04
21 4 0.01
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.30
Consensus pattern (18 bp):
AAACACGAAAATTTTTGA
Found at i:57396233 original size:9 final size:9
Alignment explanation
Indices: 57396219--57396261 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
57396209 ATTCACGAGA
57396219 ATTTTTTTT
1 ATTTTTTTT
57396228 A--TTTTTT
1 ATTTTTTTT
*
57396235 ATTATTTTT
1 ATTTTTTTT
*
57396244 ATTATTTTT
1 ATTTTTTTT
57396253 ATTTTTTTT
1 ATTTTTTTT
57396262 TGAAACACGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 7 0.23
9 23 0.77
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:57396241 original size:19 final size:18
Alignment explanation
Indices: 57396219--57396262 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
57396209 ATTCACGAGA
57396219 ATTTTTTTTATTTTTTATT
1 ATTTTTTTTA-TTTTTATT
*
57396238 ATTTTTATTATTTTTATT
1 ATTTTTTTTATTTTTATT
57396256 -TTTTTTT
1 ATTTTTTT
57396263 GAAACACGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 8 0.35
19 9 0.39
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (18 bp):
ATTTTTTTTATTTTTATT
Found at i:57396276 original size:20 final size:20
Alignment explanation
Indices: 57396255--57396291 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
57396245 TTATTTTTAT
57396255 TTTTTTTTG-AAACACGAGA
1 TTTTTTTTGAAAACACGAGA
57396274 TTTTTTTTGAAAACACGA
1 TTTTTTTTGAAAACACGA
57396292 AAACACGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (20 bp):
TTTTTTTTGAAAACACGAGA
Found at i:57396339 original size:17 final size:16
Alignment explanation
Indices: 57396290--57396337 Score: 64
Period size: 15 Copynumber: 3.0 Consensus size: 16
57396280 TTGAAAACAC
57396290 GAAAACACGAATTTTT
1 GAAAACACGAATTTTT
57396306 G-AAACACGGAAATTTTT
1 GAAAACAC-G-AATTTTT
57396323 GAAAACACG-ATTTTT
1 GAAAACACGAATTTTT
57396338 TTAGAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 2 0.07
17 9 0.31
18 6 0.21
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (16 bp):
GAAAACACGAATTTTT
Found at i:57397155 original size:23 final size:24
Alignment explanation
Indices: 57397111--57397160 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 24
57397101 TTCAGTTACC
57397111 TTTTTTTCTTCTTTTGCTTGC-TA
1 TTTTTTTCTTCTTTTGCTTGCTTA
57397134 TTTTTTTCTGTC-TTTG-TCTGCTTA
1 TTTTTTTCT-TCTTTTGCT-TGCTTA
57397158 TTT
1 TTT
57397161 GTGGAGGTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 1 0.04
23 16 0.67
24 7 0.29
ACGTcount: A:0.04, C:0.16, G:0.10, T:0.70
Consensus pattern (24 bp):
TTTTTTTCTTCTTTTGCTTGCTTA
Found at i:57397694 original size:30 final size:30
Alignment explanation
Indices: 57397654--57397755 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
57397644 ATTTAGGATT
* *
57397654 AAAATGAAATTTAATGAAGGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
57397684 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
57397714 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
57397744 AAAATGCAATTT
1 AAAATGAAATTT
57397756 TTATTTTTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.43, C:0.04, G:0.24, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:57398109 original size:55 final size:55
Alignment explanation
Indices: 57398025--57398249 Score: 265
Period size: 56 Copynumber: 4.1 Consensus size: 55
57398015 CACGTGAGCC
* * *
57398025 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTG-AA
******* *
57398080 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAATAGAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTG-AA
*
57398136 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAAAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAAAAATTGAA
* * *
57398192 AAGGCTCAGCTCACCTGTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAA
57398247 AAG
1 AAG
57398250 TAGAAATTGA
Statistics
Matches: 142, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
54 18 0.13
55 43 0.30
56 69 0.49
57 1 0.01
58 11 0.08
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAA
Found at i:57398222 original size:112 final size:110
Alignment explanation
Indices: 57398025--57398229 Score: 313
Period size: 112 Copynumber: 1.8 Consensus size: 110
57398015 CACGTGAGCC
* * *
57398025 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATT-CAAAAGGCTCAAC
57398090 TCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAATAGAAA
65 TCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAATAGAAA
*
57398136 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAAAAATT-AAAAGGCTCA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTG-AAAACAAAAATTCAAAAGGCTCA
* *
57398200 GCTCACCTGTCGCAATATGAGTTGATTTTT
63 ACTCACCTCTCGCAATATGAGTTGATTTTT
57398230 GAAAAACAGA
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
111 30 0.35
112 39 0.46
113 6 0.07
114 10 0.12
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (110 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTCAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAATAGAAA
Found at i:57398247 original size:14 final size:14
Alignment explanation
Indices: 57398228--57398262 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
57398218 GAGTTGATTT
57398228 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
57398242 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
57398256 TTGAAAA
1 TTGAAAA
57398263 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:57398315 original size:87 final size:87
Alignment explanation
Indices: 57398193--57398406 Score: 322
Period size: 86 Copynumber: 2.5 Consensus size: 87
57398183 AAAAATTAAA
* * ** *
57398193 AGGCTCAGCTCACCTGTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGTAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATG
*
57398258 GAAAATACCTCAGCGTGCCCTG
66 GAAAATACCTCAGCATGCCCTG
* * *
57398280 AGGCTCAACTCACCTCTTGCAATATGAATTGATTTTTG-AAAACATAAATTGAAAAACAGAAATG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATG
*
57398344 GAAAATACCTCAGCATGTCCTG
66 GAAAATACCTCAGCATGCCCTG
*
57398366 AGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
57398407 CATACAAAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 77 0.68
87 36 0.32
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATG
GAAAATACCTCAGCATGCCCTG
Found at i:57398602 original size:72 final size:72
Alignment explanation
Indices: 57398332--57398862 Score: 672
Period size: 72 Copynumber: 7.2 Consensus size: 72
57398322 CATAAATTGA
* * ** *
57398332 AAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
57398397 ATTTTTG
66 AATTTTG
* * * ** *
57398404 AAACATACAAAAAATTGACAATACCTAAGTATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 -AA-A-AC-AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGA
57398469 GTTGAATTTTG
62 GTTGAATTTTG
* * * *
57398480 AAAAGCAGAAATTGAAAATACCTCAACTTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
57398545 GAATTTTG
65 GAATTTTG
* * *
57398553 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
57398618 AATTTTG
66 AATTTTG
*
57398625 AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
57398690 GAATTTTG
65 GAATTTTG
* *
57398698 AAAACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* *
57398763 ATTTTTTTTTT
66 A----ATTTTG
** *
57398774 AACAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
1 AA-AACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGT
57398838 TG-ATTTTG
64 TGAATTTTG
*
57398846 AAAAACATAAATT-AAAA
1 -AAAACAGAAATTGAAAA
57398863 GGCTTAACTC
Statistics
Matches: 409, Mismatches: 37, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
72 145 0.35
73 137 0.33
74 3 0.01
75 4 0.01
76 66 0.16
77 54 0.13
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (72 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTG
Found at i:57398625 original size:145 final size:146
Alignment explanation
Indices: 57398328--57398858 Score: 684
Period size: 145 Copynumber: 3.6 Consensus size: 146
57398318 AAAACATAAA
* * * * *
57398328 TTGAAAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* *
57398393 GTTGATTTTTGAAACATACAAAAAATTGACAA-TACCT-AA-GTATGTCTTGAGGCTCAACTCAT
66 GTTGAATTTTGAAA-A-AC-AGAAATTGA-AATTACCTCAACG--TGTCTTGAGGCTCAACTCAT
57398455 TTCTCGCAATATGAGTTGAATT
125 TTCTCGCAATATGAGTTGAATT
* * * **
57398477 TTGAAAAGCAGAAATTGAAAATACCTCAACTTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
57398542 GTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
66 GTTGAATTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
57398606 CAATATGAGTTGAATT
131 CAATATGAGTTGAATT
** * *
57398622 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* * *
57398687 GTTGAATTTTG-AAAACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
66 GTTGAATTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
*
57398751 CAATATGAGTTGATTTTTTT
131 CAATATGAGTTGA----ATT
*
57398771 TTTAACAA-CAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-AGCAATA
1 TTGAA-AAGCAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-CAATA
*
57398833 TGAGTTG-ATTTTGAAAAACATAAATT
63 TGAGTTGAATTTTGAAAAACAGAAATT
57398859 AAAAGGCTTA
Statistics
Matches: 345, Mismatches: 26, Indels: 22
0.88 0.07 0.06
Matches are distributed among these distances:
144 2 0.01
145 189 0.55
146 4 0.01
147 2 0.01
148 12 0.03
149 134 0.39
150 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (146 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGAATTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
CAATATGAGTTGAATT
Found at i:57453219 original size:87 final size:87
Alignment explanation
Indices: 57453110--57453406 Score: 307
Period size: 87 Copynumber: 3.4 Consensus size: 87
57453100 TGAAGCCAGA
*
57453110 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTAC
1 GATCTCATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTAC
* * *
57453175 AGCGAAGCGGATTAAAATAAAG
66 AGTGGAGCAGATTAAAATAAAG
* * * * ** * *
57453197 GATCTCATCTCTCTGA-AGTTACAGTGGAGTAGATCGCA-TCA-GGTCTTATCTCCCTGAGGTTA
1 GATCTCATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTA
* ** **
57453259 CAGTGGAGTAGACCGAAGAATTTCA-
65 CAGTGGAGCAGA-TTAA-AA-TAAAG
** *
57453284 GATCTTGTCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTAC
1 GATCTCATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTAC
* *
57453349 AGTGGGGCAGATTAAAATAAGG
66 AGTGGAGCAGATTAAAATAAAG
*
57453371 GATCTCATCTCTCTGA-AGTTACAGCGGAGTAGATCG
1 GATCTCATCTCCCTGAGA-TTACAGCGGAGTAGATCG
57453407 CATCAGGTCT
Statistics
Matches: 163, Mismatches: 38, Indels: 18
0.74 0.17 0.08
Matches are distributed among these distances:
85 25 0.15
86 7 0.04
87 98 0.60
88 7 0.04
89 26 0.16
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (87 bp):
GATCTCATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTAC
AGTGGAGCAGATTAAAATAAAG
Found at i:57453259 original size:41 final size:41
Alignment explanation
Indices: 57453203--57453444 Score: 155
Period size: 41 Copynumber: 5.7 Consensus size: 41
57453193 AAAGGATCTC
* *
57453203 ATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAGGTCTT
1 ATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTT
* * *
57453244 ATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
1 ATCTCCCTGAAGTTACAGTGGAGTAGATC---GAA--TCAGGTCTT
* * * ** *
57453290 GTCTCCCTG-AGATTACAGCGGAGTAGATCGAAGACACTATCCT
1 ATCTCCCTGAAG-TTACAGTGGAGTAGATCGAA-TCA-GGTCTT
* * * ** * *
57453333 ATCTCCCCG-AGTTTACAGTGGGGCAGATTAAAATAAGGGATCTC
1 ATCTCCCTGAAG-TTACAGTGGAGTAGA-TCGAATCA-GG-TCTT
* * *
57453377 ATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAGGTCTT
1 ATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTT
* *
57453418 ATCTCCTTGAAGTCACAGTGGAGTAGA
1 ATCTCCCTGAAGTTACAGTGGAGTAGA
57453445 CCAAAGATAC
Statistics
Matches: 149, Mismatches: 42, Indels: 20
0.71 0.20 0.09
Matches are distributed among these distances:
41 52 0.35
42 4 0.03
43 33 0.22
44 26 0.17
45 3 0.02
46 31 0.21
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (41 bp):
ATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTT
Found at i:57453313 original size:46 final size:46
Alignment explanation
Indices: 57453235--57453323 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
57453225 GTAGATCGCA
* * *
57453235 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGACCGAAGAATT
* *
57453281 TCAGATCTTGTCTCCCTGAGATTACAGCGGAGTAGATCGAAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGACCGAAGA
57453324 CACTATCCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (46 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGACCGAAGAATT
Found at i:57453402 original size:174 final size:174
Alignment explanation
Indices: 57453109--57453451 Score: 578
Period size: 174 Copynumber: 2.0 Consensus size: 174
57453099 TTGAAGCCAG
*
57453109 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
* *
57453174 CAGCGAAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAG
66 CAGCGAAGCAGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
* * *
57453239 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
131 GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGAATTTC
*
57453283 AGATCTTGTCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
* ** *
57453348 CAGTGGGGCAGATTAAAATAAGGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
66 CAGCGAAGCAGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
*
57453413 GTCTTATCTCCTTGAAGTCACAGTGGAGTAGACCAAAGA
131 GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGA
57453452 TACAAGTATT
Statistics
Matches: 157, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
174 157 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
CAGCGAAGCAGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGAATTTC
Found at i:57457832 original size:15 final size:16
Alignment explanation
Indices: 57457809--57457841 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
57457799 CAATTCAATT
*
57457809 TATTTAAAA-TAAAAA
1 TATTAAAAATTAAAAA
57457824 TATTAAAAATTAAAAA
1 TATTAAAAATTAAAAA
57457840 TA
1 TA
57457842 CTATTGACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TATTAAAAATTAAAAA
Found at i:57458044 original size:20 final size:18
Alignment explanation
Indices: 57458019--57458077 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 18
57458009 TTTATAAGAT
57458019 TATAAAAATGTAAAATAATA
1 TATAAAAAT-TAAAAT-ATA
* *
57458039 TATAAAAATTTAAAATTTT
1 TATAAAAA-TTAAAATATA
57458058 TATAAAAATTAAAA-ATA
1 TATAAAAATTAAAATATA
57458075 TAT
1 TAT
57458078 TTAATTTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
17 4 0.12
18 6 0.18
19 9 0.26
20 14 0.41
21 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
TATAAAAATTAAAATATA
Found at i:57458061 original size:19 final size:20
Alignment explanation
Indices: 57458018--57458080 Score: 74
Period size: 19 Copynumber: 3.1 Consensus size: 20
57458008 TTTTATAAGA
*
57458018 TTATAAAAATGTAAAATAAT
1 TTATAAAAATTTAAAATAAT
* *
57458038 ATATAAAAATTTAAAAT-TT
1 TTATAAAAATTTAAAATAAT
*
57458057 TTATAAAAATTAAAAATATAT
1 TTATAAAAATTTAAAATA-AT
57458078 TTA
1 TTA
57458081 ATTTTCAAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
19 16 0.46
20 15 0.43
21 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
TTATAAAAATTTAAAATAAT
Found at i:57458241 original size:15 final size:15
Alignment explanation
Indices: 57458223--57458253 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57458213 TTCTTTTTTT
57458223 TTTATAAATTTTATA
1 TTTATAAATTTTATA
*
57458238 TTTATAATTTTTATA
1 TTTATAAATTTTATA
57458253 T
1 T
57458254 ATATTTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTATAAATTTTATA
Found at i:57458258 original size:19 final size:17
Alignment explanation
Indices: 57458231--57458275 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
57458221 TTTTTATAAA
57458231 TTTTATAT-TTAT-AATT
1 TTTTATATATT-TCAATT
57458247 TTTATATATATTTCAATT
1 TTT-TATATATTTCAATT
57458265 TTTTATATATT
1 TTTTATATATT
57458276 AATTTCGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 3 0.12
17 14 0.54
18 9 0.35
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATATATTTCAATT
Found at i:57458280 original size:21 final size:19
Alignment explanation
Indices: 57458245--57458293 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 19
57458235 ATATTTATAA
57458245 TTTTTATATATATTTCAAT
1 TTTTTATATATATTTCAAT
*
57458264 TTTTTATATATTAATTTCGAT
1 TTTTTATATA-T-ATTTCAAT
*
57458285 TTTTCATAT
1 TTTTTATAT
57458294 TTTTAGTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 10 0.38
20 1 0.04
21 15 0.58
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTATATATATTTCAAT
Found at i:57459309 original size:12 final size:12
Alignment explanation
Indices: 57459292--57459329 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
57459282 TATAGAAAAT
57459292 ATGATAATAATA
1 ATGATAATAATA
*
57459304 ATGATAGTAAATA
1 ATGATAAT-AATA
57459317 ATG-TAATAATA
1 ATGATAATAATA
57459328 AT
1 AT
57459330 AGTAATGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 6 0.26
12 10 0.43
13 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (12 bp):
ATGATAATAATA
Found at i:57459315 original size:24 final size:24
Alignment explanation
Indices: 57459283--57459329 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
57459273 ATGTATATGT
57459283 ATAGAAAAT-ATGATAATAATAATG
1 ATAGAAAATAATG-TAATAATAATG
*
57459307 ATAGTAAATAATGTAATAATAAT
1 ATAGAAAATAATGTAATAATAAT
57459330 AGTAATGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (24 bp):
ATAGAAAATAATGTAATAATAATG
Found at i:57461472 original size:22 final size:22
Alignment explanation
Indices: 57461433--57461474 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
57461423 AAATAATGAG
57461433 AAAACAACAAAAAAATAGCATT
1 AAAACAACAAAAAAATAGCATT
57461455 AAAACAACAAAAAAATAGCA
1 AAAACAACAAAAAAATAGCA
57461475 AATTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.71, C:0.14, G:0.05, T:0.10
Consensus pattern (22 bp):
AAAACAACAAAAAAATAGCATT
Found at i:57481635 original size:26 final size:26
Alignment explanation
Indices: 57481580--57481636 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
57481570 TGTAAAAATC
* * **
57481580 ATGAAAATAATTATTTTTAACTTTTC
1 ATGAAAATAAATATTTTTAAATTTAA
57481606 ATGAAAATAAATATTTTTAAATTTAA
1 ATGAAAATAAATATTTTTAAATTTAA
57481632 ATGAA
1 ATGAA
57481637 TTAGGCTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (26 bp):
ATGAAAATAAATATTTTTAAATTTAA
Found at i:57484598 original size:20 final size:20
Alignment explanation
Indices: 57484564--57484605 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
57484554 AACTATTTAA
** *
57484564 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
57484584 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
57484604 AT
1 AT
57484606 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:57496137 original size:71 final size:71
Alignment explanation
Indices: 57495986--57496152 Score: 192
Period size: 71 Copynumber: 2.4 Consensus size: 71
57495976 ACACATATGA
* * * * *
57495986 TATTGTCGGTTTATCCGACCAGCACTAGGCGCAAAACATTGTCAATTTATCTAATCAGTGCGGGG
1 TATTGTCGGTTTATCCGACCAGCGCTAGGCACAAAACATTATCAATTTATCCAACCAGTGCGGGG
*
57496051 AATATC
66 AACATC
** * ** *
57496057 TATCATCGGTTTATCCGACCAGCGTTAGGCACAAAACATTATCGGTTTATCCAACCAGTGTGGGG
1 TATTGTCGGTTTATCCGACCAGCGCTAGGCACAAAACATTATCAATTTATCCAACCAGTGCGGGG
* *
57496122 CACATT
66 AACATC
57496128 TATTGTCGGTATTA-CCGACCAGCGC
1 TATTGTCGGT-TTATCCGACCAGCGC
57496153 AGGGCGCAAA
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
71 75 0.96
72 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (71 bp):
TATTGTCGGTTTATCCGACCAGCGCTAGGCACAAAACATTATCAATTTATCCAACCAGTGCGGGG
AACATC
Found at i:57499490 original size:22 final size:22
Alignment explanation
Indices: 57499465--57499556 Score: 123
Period size: 22 Copynumber: 4.2 Consensus size: 22
57499455 AAATTCAATA
57499465 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
**
57499487 TCAA-TTCCTTTTGAAAATTCTC
1 TCAATTTCC-TTCAAAAATTCTC
* *
57499509 TCAATTCCCTTCAAAATTTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
57499531 TCAATTTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
57499553 TCAA
1 TCAA
57499557 ACTCTCAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
21 4 0.07
22 52 0.88
23 3 0.05
ACGTcount: A:0.29, C:0.28, G:0.01, T:0.41
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:57499562 original size:30 final size:30
Alignment explanation
Indices: 57499528--57499586 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
57499518 TTCAAAATTT
* *
57499528 CTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
57499558 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
57499587 TTTCCTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.34
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:57499563 original size:52 final size:52
Alignment explanation
Indices: 57499506--57499605 Score: 141
Period size: 52 Copynumber: 1.9 Consensus size: 52
57499496 TTTGAAAATT
* * *
57499506 CTCTC-AATTCCCTT-CAAAATTTCTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATT-CCTTCCAAAA-TCCTCTCAATTTCCTTCAAAAAATCTCTCAAA
57499558 CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCT
1 CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCT
57499606 AAATCCATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
52 34 0.79
53 9 0.21
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (52 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCTCAAA
Found at i:57499605 original size:22 final size:22
Alignment explanation
Indices: 57499558--57499599 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
57499548 TTCTCTCAAA
*
57499558 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCAAAAATC
*
57499580 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCAAAAA
57499600 ATCTCTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCAAAAATC
Found at i:57499679 original size:18 final size:18
Alignment explanation
Indices: 57499656--57499704 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
57499646 TTTAAGAAAA
* *
57499656 TTTTAAAATTTTTTATTT
1 TTTTAAAATTTTTAAATT
*
57499674 TTTTAAATAATTTTAAATT
1 TTTTAAA-ATTTTTAAATT
*
57499693 TTTTAATATTTT
1 TTTTAAAATTTT
57499705 CAACAATGGC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAAAATTTTTAAATT
Found at i:57499696 original size:29 final size:29
Alignment explanation
Indices: 57499641--57499697 Score: 91
Period size: 27 Copynumber: 2.0 Consensus size: 29
57499631 ATTAAATTTC
57499641 ATTTTTTTAAGAAAATTTTAAAATTTTTT
1 ATTTTTTTAAGAAAATTTTAAAATTTTTT
*
57499670 ATTTTTTTAA-ATAATTTT-AAATTTTTT
1 ATTTTTTTAAGAAAATTTTAAAATTTTTT
57499697 A
1 A
57499698 ATATTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 10 0.37
28 7 0.26
29 10 0.37
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTTTTAAGAAAATTTTAAAATTTTTT
Found at i:57499704 original size:28 final size:29
Alignment explanation
Indices: 57499644--57499704 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
57499634 AAATTTCATT
*
57499644 TTTTTAAGAAAATTTTAAAATTTTTTATT
1 TTTTTAAGAAAATTTTAAAATTTTTTATA
*
57499673 TTTTTAA-ATAATTTT-AAATTTTTTAATA
1 TTTTTAAGAAAATTTTAAAATTTTTT-ATA
57499701 TTTT
1 TTTT
57499705 CAACAATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 9 0.31
28 13 0.45
29 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTTTAAGAAAATTTTAAAATTTTTTATA
Found at i:57499794 original size:7 final size:7
Alignment explanation
Indices: 57499777--57499806 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
57499767 ATGGTAAGTA
57499777 TTAAA-T
1 TTAAATT
57499783 TTAAATT
1 TTAAATT
57499790 TTAAATT
1 TTAAATT
57499797 TTAAATT
1 TTAAATT
57499804 TTA
1 TTA
57499807 TTTAAGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAAATT
Found at i:57499831 original size:14 final size:15
Alignment explanation
Indices: 57499802--57499835 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
57499792 AAATTTTAAA
57499802 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
57499817 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
57499831 TTTTA
1 TTTTA
57499836 GATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:57503820 original size:125 final size:125
Alignment explanation
Indices: 57503598--57503854 Score: 399
Period size: 125 Copynumber: 2.1 Consensus size: 125
57503588 CCACGAGGGC
*
57503598 GCGATTTGACACTATTTGCTCAGAAATGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* * * **
57503663 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* * *
57503723 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAAAAATTATTTCTTACATGACC-ACTGTAG
1 GCGATTTGACACTATTTGCTCAG-AAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAG
* *
57503787 CGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTGGTAGAA
65 CGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
57503848 GCGATTT
1 GCGATTT
57503855 CCCATTATTT
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
125 89 0.74
126 31 0.26
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (125 bp):
GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:57504182 original size:29 final size:29
Alignment explanation
Indices: 57504117--57504182 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
57504107 GATTTCGGGG
57504117 AAAATGGCCCATTCCGGTAAATAATTAAA
1 AAAATGGCCCATTCCGGTAAATAATTAAA
* * **
57504146 AAACTGGCCCATTTCGGT-AATTTTATAAA
1 AAAATGGCCCATTCCGGTAAATAAT-TAAA
57504175 AAAATGGC
1 AAAATGGC
57504183 TTTTTTTAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (29 bp):
AAAATGGCCCATTCCGGTAAATAATTAAA
Found at i:57507745 original size:15 final size:16
Alignment explanation
Indices: 57507727--57507757 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57507717 TTTTAACAAA
57507727 AAATT-AAAACAAATG
1 AAATTAAAAACAAATG
57507742 AAATTAAAAACAAATG
1 AAATTAAAAACAAATG
57507758 CGTATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
AAATTAAAAACAAATG
Found at i:57508400 original size:6 final size:6
Alignment explanation
Indices: 57508391--57508442 Score: 77
Period size: 6 Copynumber: 8.3 Consensus size: 6
57508381 TTACTATTCG
*
57508391 TTTCTT TTTCTTT TTTGATT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
1 TTTCTT TTTC-TT TTT-CTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
57508441 TT
1 TT
57508443 ACAGCATTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 32 0.76
7 10 0.24
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:57510293 original size:111 final size:111
Alignment explanation
Indices: 57510099--57510314 Score: 360
Period size: 111 Copynumber: 1.9 Consensus size: 111
57510089 GAGCTAGAGC
* ***
57510099 CTTTGTTCCACCCACCAGATTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCAGTGGATTGA
1 CTTTGTTCCACCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
**
57510164 TTCCAAGTCTTGGCTCCACCTCCACTTGTTCCACCATTCCCCCCCT
66 TTCCAAGTCTTACCTCCACCTCCACTTGTTCCACCATTCCCCCCCT
*
57510210 CTTTGTTCCAGCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
1 CTTTGTTCCACCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
*
57510275 TTCCAATTCTTACCTCCACCTCCACTTGTTCCACCATTCC
66 TTCCAAGTCTTACCTCCACCTCCACTTGTTCCACCATTCC
57510315 AGCCCTGGTT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
111 97 1.00
ACGTcount: A:0.20, C:0.36, G:0.15, T:0.29
Consensus pattern (111 bp):
CTTTGTTCCACCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
TTCCAAGTCTTACCTCCACCTCCACTTGTTCCACCATTCCCCCCCT
Found at i:57510587 original size:30 final size:30
Alignment explanation
Indices: 57510551--57510645 Score: 109
Period size: 30 Copynumber: 3.2 Consensus size: 30
57510541 ACCTCTTCCA
* * ** *
57510551 CCTCTACCTCTGTAGCCACCTCTGTCACCT
1 CCTCTACCTCCGTAGCCACCACCATCACCG
* *
57510581 CCTCTACCTCCGAAGCCTCCACCATCACCG
1 CCTCTACCTCCGTAGCCACCACCATCACCG
* *
57510611 CCTCTACCTCCGTAGCCTCCACCATCACCA
1 CCTCTACCTCCGTAGCCACCACCATCACCG
57510641 CCTCT
1 CCTCT
57510646 GCCACCAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.17, C:0.52, G:0.08, T:0.23
Consensus pattern (30 bp):
CCTCTACCTCCGTAGCCACCACCATCACCG
Found at i:57510660 original size:30 final size:30
Alignment explanation
Indices: 57510575--57510660 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 30
57510565 GCCACCTCTG
* * * *
57510575 TCACCTCCTCTACCTCCGAAGCCTCCACCA
1 TCACCACCTCTACCACCAAAACCTCCACCA
* * ** *
57510605 TCACCGCCTCTACCTCCGTAGCCTCCACCA
1 TCACCACCTCTACCACCAAAACCTCCACCA
*
57510635 TCACCACCTCTGCCACCAAAACCTCC
1 TCACCACCTCTACCACCAAAACCTCC
57510661 TCTGTCAGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.21, C:0.53, G:0.07, T:0.19
Consensus pattern (30 bp):
TCACCACCTCTACCACCAAAACCTCCACCA
Found at i:57511131 original size:93 final size:93
Alignment explanation
Indices: 57510965--57511166 Score: 309
Period size: 93 Copynumber: 2.2 Consensus size: 93
57510955 GTTCCAACCA
*
57510965 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCGCAACTTTTCTTACCCCA
1 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCCCAACTTTTCTTACCCCA
*
57511030 GCTTGAATCCTGACTTGCATCTG-TCGAT
66 GCTTGAATCCTGACTTGCATCCGCT-GAT
* * *
57511058 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGCATCATTTCCAGTGCCCCAATTTTTCTTACCCCA
1 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCCCAACTTTTCTTACCCCA
57511123 G-TTAGAATCCTGACTTGCATCCGCTGAT
66 GCTT-GAATCCTGACTTGCATCCGCTGAT
* *
57511151 CCCTTTTTCCCCCAAC
1 CCTTTTTTGCCCCAAC
57511167 TAGAATCATT
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
92 2 0.02
93 97 0.97
94 1 0.01
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (93 bp):
CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCCCAACTTTTCTTACCCCA
GCTTGAATCCTGACTTGCATCCGCTGAT
Found at i:57521617 original size:45 final size:45
Alignment explanation
Indices: 57521567--57521830 Score: 465
Period size: 45 Copynumber: 5.9 Consensus size: 45
57521557 AAGAGGTGGA
57521567 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
57521612 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
57521657 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
57521702 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
57521747 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
57521792 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
57521831 CCATGGCCGA
Statistics
Matches: 210, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 210 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:57524062 original size:45 final size:45
Alignment explanation
Indices: 57524012--57524275 Score: 456
Period size: 45 Copynumber: 5.9 Consensus size: 45
57524002 AAGAGGTGGA
*
57524012 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
57524057 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
57524102 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
57524147 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
57524192 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
57524237 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
57524276 CCATGGCCGA
Statistics
Matches: 209, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 209 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:57532837 original size:31 final size:31
Alignment explanation
Indices: 57532799--57532864 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 31
57532789 AACAACCCAT
*
57532799 TGACTTAAAT-AAAAACTTTTAAATAGTTTAG
1 TGACTTAAATGAAAAA-TTTCAAATAGTTTAG
57532830 TGACTTAAATGAAAAATTTCAAATAGTTTAG
1 TGACTTAAATGAAAAATTTCAAATAGTTTAG
57532861 TGAC
1 TGAC
57532865 CAAAATGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (31 bp):
TGACTTAAATGAAAAATTTCAAATAGTTTAG
Found at i:57532871 original size:31 final size:32
Alignment explanation
Indices: 57532805--57532871 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 32
57532795 CCATTGACTT
* **
57532805 AAAT-AAAAACTTTTAAATAGTTTAGTGACTT
1 AAATGAAAAACTTTCAAATAGTTTAGTGACCA
57532836 AAATGAAAAA-TTTCAAATAGTTTAGTGACCA
1 AAATGAAAAACTTTCAAATAGTTTAGTGACCA
57532867 AAATG
1 AAATG
57532872 TAACGTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (32 bp):
AAATGAAAAACTTTCAAATAGTTTAGTGACCA
Found at i:57534387 original size:25 final size:25
Alignment explanation
Indices: 57534341--57534389 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
57534331 AATATATATT
*
57534341 TAATATATAATTCAGATTAAAAGTC
1 TAATATATAATTCAGATAAAAAGTC
*
57534366 TAATATATATATTTA-ATAAAAAGT
1 TAATATATA-ATTCAGATAAAAAGT
57534390 ATATTTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (25 bp):
TAATATATAATTCAGATAAAAAGTC
Found at i:57542895 original size:12 final size:13
Alignment explanation
Indices: 57542870--57542894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57542860 CAAAAATTCA
57542870 AAAAATTATTTTT
1 AAAAATTATTTTT
57542883 AAAAATTATTTT
1 AAAAATTATTTT
57542895 ATTTTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAAATTATTTTT
Found at i:57547210 original size:67 final size:66
Alignment explanation
Indices: 57547046--57547281 Score: 314
Period size: 67 Copynumber: 3.6 Consensus size: 66
57547036 TTGATTTATT
* * * *
57547046 TATTGAATTTTCATTCTTTTATGAACTTCAATTATTTGCATATGTTTGCATTATG--TTATTTTT
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATGTTTTGTTTTT
57547109 C
66 C
*
57547110 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACTTATATTTGCATTATGTTTCTGTTTT
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATGTTT-TGTTTT
57547175 TC
65 TC
* * * * * *
57547177 TATTGAATTTTCATTCTTGTATCAATTTAAATTATTTAAATATATCTGTATTATGTTTTTGTTTT
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATG-TTTTGTTTT
57547242 TC
65 TC
* * *
57547244 TATTGAGTTTTCACTCTTATATGAACTTCAATTATTTA
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTA
57547282 GATGAACTTG
Statistics
Matches: 150, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
64 51 0.34
66 1 0.01
67 95 0.63
68 3 0.02
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.56
Consensus pattern (66 bp):
TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATGTTTTGTTTTT
C
Found at i:57550034 original size:14 final size:14
Alignment explanation
Indices: 57550015--57550041 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57550005 AACTTCAATT
57550015 TTTTGTGTGGGGGG
1 TTTTGTGTGGGGGG
57550029 TTTTGTGTGGGGG
1 TTTTGTGTGGGGG
57550042 TTGGGGACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.56, T:0.44
Consensus pattern (14 bp):
TTTTGTGTGGGGGG
Found at i:57553869 original size:19 final size:18
Alignment explanation
Indices: 57553821--57553872 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
57553811 AAAAATATTA
*
57553821 TTAAAAA-ATAATTTAAC
1 TTAAAAATATAATTAAAC
* *
57553838 -TAATAATAAAATTAATAC
1 TTAAAAATATAATTAA-AC
57553856 TTAAAAATATAATTAAA
1 TTAAAAATATAATTAAA
57553873 ATAAAATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
16 5 0.19
17 6 0.22
18 3 0.11
19 13 0.48
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAAATATAATTAAAC
Found at i:57565675 original size:19 final size:20
Alignment explanation
Indices: 57565638--57565676 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
57565628 GTTATTTTTC
* *
57565638 GAAAAATTAATTTTGATCAA
1 GAAAAATTAATATTAATCAA
57565658 GAAAAATTAA-ATTAATCAA
1 GAAAAATTAATATTAATCAA
57565677 ATCAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
GAAAAATTAATATTAATCAA
Found at i:57566043 original size:19 final size:17
Alignment explanation
Indices: 57566028--57566118 Score: 66
Period size: 17 Copynumber: 5.4 Consensus size: 17
57566018 ATTTTAATAT
57566028 TTTAATATTAAATTAAA
1 TTTAATATTAAATTAAA
57566045 TTTAATACTT--ATCTAAA
1 TTTAATA-TTAAAT-TAAA
* **
57566062 --TAGTATTTTATT-AA
1 TTTAATATTAAATTAAA
*
57566076 TTTAATATTAAATTGATTA
1 TTTAATATTAAATT-A-AA
57566095 TCTTAATATTAAATTAAA
1 T-TTAATATTAAATTAAA
57566113 TTTAAT
1 TTTAAT
57566119 GTTTATCTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
14 4 0.07
15 5 0.09
16 13 0.22
17 16 0.28
18 4 0.07
19 3 0.05
20 13 0.22
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATATTAAATTAAA
Found at i:57571783 original size:3 final size:3
Alignment explanation
Indices: 57571777--57571809 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
57571767 TATTGTGTTA
57571777 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57571810 AATATTTCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:57576488 original size:90 final size:90
Alignment explanation
Indices: 57576292--57576494 Score: 232
Period size: 90 Copynumber: 2.2 Consensus size: 90
57576282 GTTGTGGGTA
* * ***
57576292 AACCACAAAAATTGCAGGTTAATACACTGTTAGATGGTTGTGAATACACTAACATAATTACAGAT
1 AACCACCAGAATTGCAGGTTAATACACTACCAGATGGTTGTGAATACACTAACATAATTACAGAT
*
57576357 TAAAGCTGCCAGATAATGGATGGGCG
66 CAAAGCTGCCAGATAAT-GATGGGCG
** * * *
57576383 AACCACCAGTGTTGCAGGTTAATACGCTACCAGATGGTTTTGAATACAC-AACATAATTGCAGA-
1 AACCACCAGAATTGCAGGTTAATACACTACCAGATGGTTGTGAATACACTAACATAATTACAGAT
*
57576446 CAATAGCTGCCAGATAAT-ATGTGGATG
66 CAA-AGCTGCCAGATAATGATG-GG-CG
*
57576473 AACCACCAGAATTGCAGATTAA
1 AACCACCAGAATTGCAGGTTAA
57576495 GAATCTGCCA
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
88 3 0.03
89 4 0.04
90 47 0.50
91 40 0.43
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (90 bp):
AACCACCAGAATTGCAGGTTAATACACTACCAGATGGTTGTGAATACACTAACATAATTACAGAT
CAAAGCTGCCAGATAATGATGGGCG
Found at i:57586357 original size:16 final size:16
Alignment explanation
Indices: 57586320--57586361 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
57586310 TTAATCATAT
*
57586320 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
57586336 TT-AAATATATTATAA
1 TTAAAATATATTATAA
57586351 TTAAAATATAT
1 TTAAAATATAT
57586362 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:57586368 original size:14 final size:15
Alignment explanation
Indices: 57586329--57586370 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
57586319 TTTAAACATA
*
57586329 ATTATTATTAAATAT
1 ATTATAATTAAATAT
57586344 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
57586358 A-TATAATTTAATA
1 ATTATAATTAAATA
57586371 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:57586420 original size:61 final size:61
Alignment explanation
Indices: 57586355--57586542 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
57586345 TTATAATTAA
57586355 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * *
57586416 AATATATAATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
57586475 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
57586536 AATATAT
1 AATATAT
57586543 GATACTATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 20
0.72 0.14 0.15
Matches are distributed among these distances:
58 3 0.03
59 31 0.32
60 23 0.23
61 38 0.39
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:57586462 original size:120 final size:122
Alignment explanation
Indices: 57586323--57586616 Score: 504
Period size: 120 Copynumber: 2.4 Consensus size: 122
57586313 ATCATATTTA
57586323 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
57586388 TATTCTTATATGAATTTACTCAAATCATAATATATAATACTAT-AAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAAGATAAATTG
*
57586443 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
57586508 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAAGATAAATTG
* * *
57586565 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
57586617 TAAAATAATT
Statistics
Matches: 165, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 106 0.64
121 57 0.35
122 2 0.01
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (122 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATAATACTATAAAAAGATAAATTG
Found at i:57586488 original size:14 final size:15
Alignment explanation
Indices: 57586439--57586490 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
57586429 ATAAAATATA
57586439 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
57586454 TATTAAATATATTAT
1 AATTAAATATATTAT
57586469 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
57586482 AATTTAATA
1 AATTAAATA
57586491 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:57586541 original size:59 final size:59
Alignment explanation
Indices: 57586358--57586541 Score: 173
Period size: 59 Copynumber: 3.1 Consensus size: 59
57586348 TAATTAAAAT
*
57586358 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * * *
57586417 ATAT-ATAATACTATAAAA-TATAAATTAACATAATTATTATTAAAT-ATATTATAATTAAA--A
1 ATATAAT-TTA--ATAAAATTCTTAA-TAA-TTAA-TATTCTTATATGA-ATT-TACTCAAATCA
57586477 T-
58 TA
57586478 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
57586537 ATATA
1 ATATA
57586542 TGATACTATA
Statistics
Matches: 94, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 8 0.09
59 20 0.21
60 8 0.09
61 15 0.16
62 7 0.07
63 12 0.13
64 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
Found at i:57586670 original size:101 final size:93
Alignment explanation
Indices: 57586557--57586839 Score: 317
Period size: 91 Copynumber: 3.0 Consensus size: 93
57586547 CTATAAAAAG
* * * *
57586557 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT---
* *
57586621 ATAATTATAACTAATAAATTATCTTATATGAATTTGT
62 -T--CT-TAA-TAATAAATTATCTTATATGAATTTAT
* *
57586658 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
* *
57586721 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTATCTTATATGAATTTAT
* *
57586749 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
57586812 AATAATAAAATGT-TCTTATATGAATTTA
66 AATAAT-AAAT-TATCTTATATGAATTTA
57586840 CTAAAATCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
91 88 0.54
92 21 0.13
93 2 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 48 0.29
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
AATAATAAATTATCTTATATGAATTTAT
Found at i:57586686 original size:26 final size:28
Alignment explanation
Indices: 57586657--57586717 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
57586647 TATGAATTTG
*
57586657 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
57586683 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
57586711 TAAAATT
1 TATAATT
57586718 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:57586708 original size:91 final size:90
Alignment explanation
Indices: 57586632--57586839 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 90
57586622 TAATTATAAC
* * * *
57586632 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
57586697 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
57586723 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
57586788 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
57586814 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
57586840 CTAAAATCAA
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
91 87 0.81
92 21 0.19
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:57586715 original size:47 final size:46
Alignment explanation
Indices: 57586664--57586807 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
57586654 TTGTATAATT
57586664 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
57586711 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
57586755 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
57586802 TAAAAT
1 TAAAAT
57586808 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:57586799 original size:44 final size:43
Alignment explanation
Indices: 57586657--57586799 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
57586647 TATGAATTTG
* *
57586657 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
57586701 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
57586748 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
57586792 TATAATTT
1 TATAATTT
57586800 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:57586814 original size:47 final size:47
Alignment explanation
Indices: 57586682--57586820 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
57586672 TTATTATTAC
* *
57586682 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
57586729 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
57586773 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
57586820 A
1 A
57586821 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:57590114 original size:6 final size:6
Alignment explanation
Indices: 57590103--57590128 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
57590093 TAGTTTGAAC
57590103 ATTTAA ATTTAA ATTTAA ATTTAA AT
1 ATTTAA ATTTAA ATTTAA ATTTAA AT
57590129 ATAATTTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTTAA
Found at i:57590248 original size:17 final size:17
Alignment explanation
Indices: 57590213--57590251 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
57590203 ATGATTAGTT
57590213 TAATT-AAGATTGAAAA
1 TAATTAAAGATTGAAAA
* *
57590229 TAATTAAAGGTTGAACA
1 TAATTAAAGATTGAAAA
57590246 TAATTA
1 TAATTA
57590252 TTATTTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.51, C:0.03, G:0.13, T:0.33
Consensus pattern (17 bp):
TAATTAAAGATTGAAAA
Found at i:57590645 original size:12 final size:12
Alignment explanation
Indices: 57590628--57590652 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57590618 AATATGTTTT
57590628 CATAATTTTAAC
1 CATAATTTTAAC
57590640 CATAATTTTAAC
1 CATAATTTTAAC
57590652 C
1 C
57590653 CAGATAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (12 bp):
CATAATTTTAAC
Found at i:57595419 original size:34 final size:34
Alignment explanation
Indices: 57595381--57595445 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
57595371 GGTTGTTAAT
*
57595381 AGTTCGATACAGTAG-CAAATGCTATGCTTATGAC
1 AGTTCGATACAGTAGCCAAAGGC-ATGCTTATGAC
* *
57595415 AGTTCGTTACAGTGGCCAAAGGCATGCTTAT
1 AGTTCGATACAGTAGCCAAAGGCATGCTTAT
57595446 CATGCGTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 21 0.78
35 6 0.22
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (34 bp):
AGTTCGATACAGTAGCCAAAGGCATGCTTATGAC
Found at i:57597444 original size:13 final size:13
Alignment explanation
Indices: 57597414--57597438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57597404 CTAAATCGTA
57597414 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
57597427 ATTTTAGTAAAA
1 ATTTTAGTAAAA
57597439 ACTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:57603223 original size:79 final size:79
Alignment explanation
Indices: 57603087--57603248 Score: 306
Period size: 79 Copynumber: 2.1 Consensus size: 79
57603077 GGAGAAGTTG
*
57603087 TTATATTTTGCCTATAAATATGCATCACTTATGGATGTGTGATGCAACTTTTGTGAGTGCTTGTG
1 TTATATTTTGCCTATAAATATGCATCACTTATGCATGTGTGATGCAACTTTTGTGAGTGCTTGTG
57603152 CTACATTTTACTCA
66 CTACATTTTACTCA
*
57603166 TTATATTTTGCCTATAAATATGCATCACTTATGCATGTGTGATGCAACTTTTTTGAGTGCTTGTG
1 TTATATTTTGCCTATAAATATGCATCACTTATGCATGTGTGATGCAACTTTTGTGAGTGCTTGTG
57603231 CTACATTTTACTCA
66 CTACATTTTACTCA
57603245 TTAT
1 TTAT
57603249 TTGCTTGTGT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.44
Consensus pattern (79 bp):
TTATATTTTGCCTATAAATATGCATCACTTATGCATGTGTGATGCAACTTTTGTGAGTGCTTGTG
CTACATTTTACTCA
Found at i:57603594 original size:18 final size:18
Alignment explanation
Indices: 57603551--57603587 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
57603541 TAAAATGCTT
*
57603551 TTTCAA-TATTTTTATTA
1 TTTCAATTAATTTTATTA
57603568 TTTCAATTAATTTTATTA
1 TTTCAATTAATTTTATTA
57603586 TT
1 TT
57603588 CGAATTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTCAATTAATTTTATTA
Found at i:57608934 original size:17 final size:17
Alignment explanation
Indices: 57608902--57609095 Score: 169
Period size: 17 Copynumber: 10.9 Consensus size: 17
57608892 GCACAATAAT
*
57608902 AATTGTTTGAAAACACGTA
1 AATT-TTTG-AAACACGAA
*
57608921 AATTTGTGAAACACGAGA
1 AATTTTTGAAACACGA-A
* *
57608939 ATTTTTTGAAAACATGAA
1 AATTTTTG-AAACACGAA
57608957 AATTTTTGAAACACGAA
1 AATTTTTGAAACACGAA
57608974 AATTTTTGAAACAC-ATGA
1 AATTTTTGAAACACGA--A
*
57608992 ATTTTTTGAAAACACGAA
1 AATTTTTG-AAACACGAA
*
57609010 AATTTTTGAAACACAGGA
1 AATTTTTGAAACAC-GAA
57609028 AA-TTTTGAAAACACGAA
1 AATTTTTG-AAACACGAA
* * *
57609045 GAGTTTTGAAACACCG-G
1 AATTTTTGAAACA-CGAA
57609062 AATTTTTGAAAACACGAA
1 AATTTTTG-AAACACGAA
* *
57609080 GATTTTTGAAATACGA
1 AATTTTTGAAACACGA
57609096 TTTTTTTTAA
Statistics
Matches: 145, Mismatches: 18, Indels: 26
0.77 0.10 0.14
Matches are distributed among these distances:
16 1 0.01
17 63 0.43
18 63 0.43
19 17 0.12
20 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (17 bp):
AATTTTTGAAACACGAA
Found at i:57608984 original size:53 final size:54
Alignment explanation
Indices: 57608902--57609157 Score: 235
Period size: 53 Copynumber: 4.8 Consensus size: 54
57608892 GCACAATAAT
* * *
57608902 AATTGTTTGAAAACACGTAAATTTGTGAAACACGAGAATTTTTTGAAAACATGAA
1 AATT-TTTGAAAACACGAAAATTTTTGAAACACGAGAATTTTTTGAAAACACGAA
57608957 AATTTTTG-AAACACGAAAATTTTTGAAACAC-ATGAATTTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAAAATTTTTGAAACACGA-GAATTTTTTGAAAACACGAA
* * *
57609010 AATTTTTG-AAACACAGGAAA-TTTTGAAAACACGA-AGA-GTTTTG-AAACACCG-G
1 AATTTTTGAAAACAC-GAAAATTTTTG-AAACACGAGA-ATTTTTTGAAAACA-CGAA
* * ** * *
57609062 AATTTTTGAAAACACGAAGATTTTTGAAATACGA-TTTTTTTTAAAAACAAGAA
1 AATTTTTGAAAACACGAAAATTTTTGAAACACGAGAATTTTTTGAAAACACGAA
* * * *
57609115 AATTTGTGAAAACATGAAGATTTGTGAAAACACG-GAATTTTTT
1 AATTTTTGAAAACACGAAAATTTTTG-AAACACGAGAATTTTTT
57609158 TTTGAAACAC
Statistics
Matches: 167, Mismatches: 21, Indels: 27
0.78 0.10 0.13
Matches are distributed among these distances:
52 29 0.17
53 106 0.63
54 27 0.16
55 5 0.03
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (54 bp):
AATTTTTGAAAACACGAAAATTTTTGAAACACGAGAATTTTTTGAAAACACGAA
Found at i:57608998 original size:35 final size:35
Alignment explanation
Indices: 57608902--57609157 Score: 216
Period size: 35 Copynumber: 7.2 Consensus size: 35
57608892 GCACAATAAT
* * *
57608902 AATTGTTTGAAAACACGTAAATTTGTG-AAACACGAGA
1 AATT-TTTG-AAACACATGAATTTTTGAAAACACGA-A
*
57608939 ATTTTTTGAAA-ACATGAAAATTTTTG-AAACACGAA
1 AATTTTTGAAACACATG--AATTTTTGAAAACACGAA
57608974 AATTTTTGAAACACATGAATTTTTTGAAAACACGAA
1 AATTTTTGAAACACATGAA-TTTTTGAAAACACGAA
* *
57609010 AATTTTTGAAACACAGGAAATTTTGAAAACACGAA
1 AATTTTTGAAACACATGAATTTTTGAAAACACGAA
* * **
57609045 GAGTTTTGAAACACCGGAATTTTTGAAAACACGAA
1 AATTTTTGAAACACATGAATTTTTGAAAACACGAA
* * ** * *
57609080 GATTTTTGAAATACGAT-TTTTTTTAAAAACAAGAA
1 AATTTTTGAAACAC-ATGAATTTTTGAAAACACGAA
* * *
57609115 AATTTGTGAAA-ACATGAAGATTTGTGAAAACACGGA
1 AATTTTTGAAACACATG-A-ATTTTTGAAAACACGAA
*
57609151 ATTTTTT
1 AATTTTT
57609158 TTTGAAACAC
Statistics
Matches: 181, Mismatches: 29, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
33 2 0.01
34 7 0.04
35 101 0.56
36 68 0.38
37 3 0.02
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (35 bp):
AATTTTTGAAACACATGAATTTTTGAAAACACGAA
Found at i:57609128 original size:18 final size:18
Alignment explanation
Indices: 57609105--57609146 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
57609095 ATTTTTTTTA
57609105 AAAACAAGAAAATTTGTG
1 AAAACAAGAAAATTTGTG
* *
57609123 AAAACATGAAGATTTGTG
1 AAAACAAGAAAATTTGTG
57609141 AAAACA
1 AAAACA
57609147 CGGAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.21
Consensus pattern (18 bp):
AAAACAAGAAAATTTGTG
Found at i:57609320 original size:20 final size:20
Alignment explanation
Indices: 57609295--57609333 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
57609285 CGTGATTCTA
*
57609295 TTAAAACACGAGAATTTTTT
1 TTAAAACACGAAAATTTTTT
*
57609315 TTAAAACATGAAAATTTTT
1 TTAAAACACGAAAATTTTT
57609334 GAATATTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (20 bp):
TTAAAACACGAAAATTTTTT
Found at i:57609688 original size:17 final size:17
Alignment explanation
Indices: 57609667--57609708 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
57609657 TTCTTTTTTA
* *
57609667 TTTTTTATTTTTTTTCTC
1 TTTTTT-TTTCTTTCCTC
57609685 TTTTTTTTTCTTTCCTC
1 TTTTTTTTTCTTTCCTC
57609702 TTTTTTT
1 TTTTTTT
57609709 GGGCCTTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTTTTTCTTTCCTC
Found at i:57610056 original size:9 final size:9
Alignment explanation
Indices: 57610037--57610065 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
57610027 TTATTTTTAC
57610037 TTTTA-TTT
1 TTTTATTTT
57610045 TTTTATTTT
1 TTTTATTTT
57610054 TTTTATTTT
1 TTTTATTTT
57610063 TTT
1 TTT
57610066 CCTTCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTATTTT
Found at i:57610074 original size:18 final size:18
Alignment explanation
Indices: 57610037--57610125 Score: 62
Period size: 17 Copynumber: 5.0 Consensus size: 18
57610027 TTATTTTTAC
* *
57610037 TTTTATTTTTTT-ATTTT
1 TTTTATTTTTTTCCTTCT
57610054 TTTTATTTTTTTCCTTCT
1 TTTTATTTTTTTCCTTCT
* *
57610072 TTTT-TTTTCTTCC-CCT
1 TTTTATTTTTTTCCTTCT
57610088 TTTT-TCTTTTCTTCTCTTC-
1 TTTTAT-TTTT-TTC-CTTCT
*
57610107 TTTTATTCTTTTTTCTTCT
1 TTTTATT-TTTTTCCTTCT
57610126 CCAAACCCTA
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
16 7 0.12
17 23 0.40
18 14 0.25
19 8 0.14
20 5 0.09
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTTTTTTCCTTCT
Found at i:57610516 original size:74 final size:77
Alignment explanation
Indices: 57610310--57611010 Score: 935
Period size: 76 Copynumber: 9.2 Consensus size: 77
57610300 GCTTTGCTTG
* * ** * *
57610310 TTTGAAAAACAAAAATTGAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCGTATT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
*
57610375 ATGTGTTGATTT
66 ATGAGTTGATTT
* * *
57610387 TTGAGAAAAAAAATAGAAATT-AAAGATGCCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCG
1 TT-TG---AAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCG
*
57610451 CAAAATGAGTTGA-TT
62 CAATATGAGTTGATTT
* * *
57610466 TTT-AAAAACAGAAATT-AAAGATACCTTGGTATGTGATCCGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
*
57610529 ATAAGTTGATTT
66 ATGAGTTGATTT
** * *
57610541 TTAAAAAAATAGAAATT-AAAGATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
57610605 ATGAGTTGATTT
66 ATGAGTTGATTT
*
57610617 TTTGAAAAACAGAAATTGAAA-ATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
57610679 ATGAGTTGATTTT
66 ATGAGTTGA-TTT
*
57610692 TTTGAAAAACAGAAATTGAAA-ATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
57610754 ATGAGTTGATTT
66 ATGAGTTGATTT
* * * * * *
57610766 TTT-AGAAACATAAATTGAAAAATACCTCGGCGTGTGACCCAAGGCTCAACTCACCTCTCGCATT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
57610830 ATGAGTTGA-TT
66 ATGAGTTGATTT
* * * *
57610841 TTTGAAAAACATAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTTGTAAT
1 TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
57610906 ATGAGTTGATTTT
66 ATGAGTTGA-TTT
* *
57610919 TTTGAAAAATAGAAATTG-AAGAATACCTCGGCATATGACCCGAGGCTCAACTCACCTCTCGCAA
1 TTTGAAAAACAGAAATTGAAAG-ATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAA
*
57610983 TATGAGCTGATTT
65 TATGAGTTGATTT
57610996 TTTGAAAAACAGAAA
1 TTTGAAAAACAGAAA
57611011 AAGAAATGGT
Statistics
Matches: 561, Mismatches: 48, Indels: 30
0.88 0.08 0.05
Matches are distributed among these distances:
73 15 0.03
74 117 0.21
75 83 0.15
76 192 0.34
77 24 0.04
78 67 0.12
79 4 0.01
80 48 0.09
81 11 0.02
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (77 bp):
TTTGAAAAACAGAAATTGAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTT
Found at i:57610795 original size:225 final size:226
Alignment explanation
Indices: 57610316--57611002 Score: 926
Period size: 225 Copynumber: 3.0 Consensus size: 226
57610306 CTTGTTTGAA
* * *
57610316 AAACAAAAATTGAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCGTATTATGTGT
1 AAACATAAATTGAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGT
* * *
57610381 TGATTTTTGAGAAAAAAAATAGAAATT-AAAGATGCCTCGGCATGTGACCCGAGGCTCAACTCAC
66 TGATTTTT-TG---AAAAACAGAAATTGAAA-ATACCTCGGCA-GTGACCCGAGGCTCAACTCAC
* * * *
57610445 CTCTCGCAAAATGAGTTGA--TTTTT-AAAAACAGAAATT-AAAGATACCTTGGTATGTGATCCG
125 CTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAA-ATACCTCGG--CGTGACCCG
* *
57610506 AGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTAA
187 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAG
* * * *
57610545 AAAAATAGAAATT-AAAGATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AAACAT--AAATTGAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGA
*
57610609 GTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGC-GTGACCCGAGGCTCAACTCACCTCT
64 GTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCGGCAGTGACCCGAGGCTCAACTCACCTCT
*
57610673 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCA
129 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCGGCGTGACCCGAGGCTCA
57610738 ACTCACCTCTCGCAATATGAGTTGATTTTTTAG
194 ACTCACCTCTCGCAATATGAGTTGATTTTTTAG
* *
57610771 AAACATAAATTGAAAAATACCTCGGCGTGTGACCCAAGGCTCAACTCACCTCTCGCATTATGAGT
1 AAACATAAATTGAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGT
*
57610836 TGA-TTTTTGAAAAACATAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCT
66 TGATTTTTTGAAAAACAGAAATTG-AAAATACCTCGGCA-GTGACCCGAGGCTCAACTCACCTCT
* * * *
57610900 TGTAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAGAATACCTCGGCATATGACCCGAGGC
129 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAA-AATACCTCGGC--GTGACCCGAGGC
*
57610965 TCAACTCACCTCTCGCAATATGAGCTGATTTTTT-G
191 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTAG
57611000 AAA
1 AAA
57611003 AACAGAAAAA
Statistics
Matches: 411, Mismatches: 32, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
224 63 0.15
225 101 0.25
226 36 0.09
227 84 0.20
228 13 0.03
229 9 0.02
230 100 0.24
231 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (226 bp):
AAACATAAATTGAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGT
TGATTTTTTGAAAAACAGAAATTGAAAATACCTCGGCAGTGACCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCGGCGTGACCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTAG
Found at i:57622903 original size:17 final size:17
Alignment explanation
Indices: 57622871--57623103 Score: 162
Period size: 18 Copynumber: 13.1 Consensus size: 17
57622861 GCACAATAAT
*
57622871 AATTGTTTGAAAACACGTA
1 AATT-TTTG-AAACACGAA
*
57622890 AATTTGTGAAACACGAGA
1 AATTTTTGAAACACGA-A
* * *
57622908 ATTTTTTAAAAACGCGAA
1 AATTTTT-GAAACACGAA
*
57622926 AATTTTTGAAACACAAA
1 AATTTTTGAAACACGAA
* *
57622943 AATTTTTGAAACATAGGA
1 AATTTTTGAAACA-CGAA
*
57622961 ATTTTTTGAAAACACGAA
1 AATTTTTG-AAACACGAA
57622979 AATTTTTGAAACACCGAA
1 AATTTTTGAAACA-CGAA
57622997 AA-TTTTGAAAACACGAA
1 AATTTTTG-AAACACGAA
* * * *
57623014 GAGTTTTGAAACACCAG
1 AATTTTTGAAACACGAA
*
57623031 AATTTTTAAAAACACGAA
1 AATTTTT-GAAACACGAA
* * *
57623049 GATTTTTGAAGCACGAT
1 AATTTTTGAAACACGAA
** * *
57623066 TTTTTTTAAAAACAAGAA
1 AATTTTT-GAAACACGAA
*
57623084 AATTTGTGAAAACACGAA
1 AATTTTTG-AAACACGAA
57623102 AA
1 AA
57623104 AAACGAAGAT
Statistics
Matches: 164, Mismatches: 40, Indels: 21
0.73 0.18 0.09
Matches are distributed among these distances:
17 66 0.40
18 82 0.50
19 16 0.10
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (17 bp):
AATTTTTGAAACACGAA
Found at i:57622953 original size:53 final size:52
Alignment explanation
Indices: 57622871--57623103 Score: 202
Period size: 53 Copynumber: 4.4 Consensus size: 52
57622861 GCACAATAAT
* * *
57622871 AATTGTTTGAAAACACGTAAATTTGTGAAACACGAGAATTTTTTAAAAACGCGAA
1 AATT-TTTG-AAACACGAAAATTTTTGAAACACGA-AATTTTTTAAAAACACGAA
* * * *
57622926 AATTTTTGAAACACAAAAATTTTTGAAACATAGGAATTTTTTGAAAACACGAA
1 AATTTTTGAAACACGAAAATTTTTGAAACA-CGAAATTTTTTAAAAACACGAA
* * * *
57622979 AATTTTTGAAACACCGAAAA-TTTTGAAAACACGAAGA-GTTTT-GAAACACCAG
1 AATTTTTGAAACA-CGAAAATTTTTG-AAACACGAA-ATTTTTTAAAAACACGAA
* * * ** *
57623031 AATTTTTAAAAACACGAAGATTTTTGAAGCACGATTTTTTTTAAAAACAAGAA
1 AATTTTT-GAAACACGAAAATTTTTGAAACACGAAATTTTTTAAAAACACGAA
*
57623084 AATTTGTGAAAACACGAAAA
1 AATTTTTG-AAACACGAAAA
57623104 AAACGAAGAT
Statistics
Matches: 142, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
52 30 0.21
53 92 0.65
54 16 0.11
55 4 0.03
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (52 bp):
AATTTTTGAAACACGAAAATTTTTGAAACACGAAATTTTTTAAAAACACGAA
Found at i:57623003 original size:35 final size:35
Alignment explanation
Indices: 57622871--57623058 Score: 159
Period size: 35 Copynumber: 5.3 Consensus size: 35
57622861 GCACAATAAT
* *
57622871 AATTGTTTGAAA-ACACGTAAATTTGTG-AAACACGAG
1 AATT-TTTGAAACAC-CGAAAATTT-TGAAAACACGAA
* * *
57622907 AATTTTTTAAAAACGCGAAAATTTTTG-AAACACAAA
1 AATTTTTGAAACAC-CGAAAA-TTTTGAAAACACGAA
** **
57622943 AATTTTTGAAACATAGGAATTTTTTGAAAACACGAA
1 AATTTTTGAAACA-CCGAAAATTTTGAAAACACGAA
57622979 AATTTTTGAAACACCGAAAATTTTGAAAACACGAA
1 AATTTTTGAAACACCGAAAATTTTGAAAACACGAA
* * * *
57623014 GAGTTTTGAAACACC-AGAATTTTTAAAAACACGAA
1 AATTTTTGAAACACCGA-AAATTTTGAAAACACGAA
*
57623049 GATTTTTGAA
1 AATTTTTGAA
57623059 GCACGATTTT
Statistics
Matches: 126, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
34 1 0.01
35 67 0.53
36 55 0.44
37 3 0.02
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (35 bp):
AATTTTTGAAACACCGAAAATTTTGAAAACACGAA
Found at i:57623072 original size:35 final size:34
Alignment explanation
Indices: 57622871--57623102 Score: 153
Period size: 35 Copynumber: 6.5 Consensus size: 34
57622861 GCACAATAAT
* *
57622871 AATTGTTTGAAAACACGTAAATTTGT-GAAACACGAGA
1 AATT-TTTG-AAACACG-AAATTTTTAAAAACACGA-A
* * * * *
57622908 ATTTTTTAAAAACGCGAAAATTTTT-GAAACACAAA
1 AATTTTT-GAAACACG-AAATTTTTAAAAACACGAA
* * *
57622943 AATTTTTGAAACATAGGAATTTTTTGAAAACACGAA
1 AATTTTTGAAAC--ACGAAATTTTTAAAAACACGAA
* *
57622979 AATTTTTGAAACACCGAAAATTTTGAAAACACGAA
1 AATTTTTGAAACA-CGAAATTTTTAAAAACACGAA
* * *
57623014 GAGTTTTGAAACACCAGAATTTTTAAAAACACGAA
1 AATTTTTGAAACACGA-AATTTTTAAAAACACGAA
* * ** *
57623049 GATTTTTGAAGCACGATTTTTTTTAAAAACAAGAA
1 AATTTTTGAAACACGA-AATTTTTAAAAACACGAA
*
57623084 AATTTGTGAAAACACGAAA
1 AATTTTTG-AAACACGAAA
57623103 AAAACGAAGA
Statistics
Matches: 155, Mismatches: 33, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
34 7 0.05
35 93 0.60
36 52 0.34
37 3 0.02
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (34 bp):
AATTTTTGAAACACGAAATTTTTAAAAACACGAA
Found at i:57623645 original size:14 final size:14
Alignment explanation
Indices: 57623626--57623663 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
57623616 CTTTTTTTCT
57623626 TTTTTTTTCTCTTC
1 TTTTTTTTCTCTTC
57623640 TTTTTTCTT-TCTTC
1 TTTTTT-TTCTCTTC
57623654 TTTTTTTTCT
1 TTTTTTTTCT
57623664 GGCCTGTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.09
14 18 0.82
15 2 0.09
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTTCTCTTC
Found at i:57623650 original size:16 final size:17
Alignment explanation
Indices: 57623614--57623663 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
57623604 CTTGGGCCTC
57623614 TTCTTT-TT-TTCTTTT
1 TTCTTTCTTCTTCTTTT
57623629 TT-TTTC-TCTTCTTTT
1 TTCTTTCTTCTTCTTTT
57623644 TTCTTTCTTCTT-TTTT
1 TTCTTTCTTCTTCTTTT
57623660 TTCT
1 TTCT
57623664 GGCCTGTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.13
15 11 0.35
16 12 0.39
17 4 0.13
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTCTTTCTTCTTCTTTT
Found at i:57623662 original size:12 final size:12
Alignment explanation
Indices: 57623612--57623663 Score: 63
Period size: 11 Copynumber: 4.2 Consensus size: 12
57623602 GACTTGGGCC
57623612 TCTTC-TTTTTT
1 TCTTCTTTTTTT
57623623 TCTT-TTTTTTT
1 TCTTCTTTTTTT
57623634 CTCTTCTTTTTTCTT
1 -TCTTC-TTTTT-TT
57623649 TCTTCTTTTTTT
1 TCTTCTTTTTTT
57623661 TCT
1 TCT
57623664 GGCCTGTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
11 10 0.28
12 9 0.25
13 5 0.14
14 10 0.28
15 2 0.06
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
TCTTCTTTTTTT
Found at i:57624039 original size:13 final size:13
Alignment explanation
Indices: 57624000--57624081 Score: 78
Period size: 13 Copynumber: 6.5 Consensus size: 13
57623990 TGTTATACTA
* *
57624000 TTTTTACTTTTAT
1 TTTTTTCTTTTCT
*
57624013 TTTTTT-TATT-T
1 TTTTTTCTTTTCT
*
57624024 TTTTTTCTTCTCT
1 TTTTTTCTTTTCT
* *
57624037 TTTTTTCTTTCCC
1 TTTTTTCTTTTCT
57624050 TTTTTTCTTTTCT
1 TTTTTTCTTTTCT
* *
57624063 TCTGTTCTTTTCT
1 TTTTTTCTTTTCT
57624076 TTTTTT
1 TTTTTT
57624082 TCCTTCTCCA
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
11 7 0.13
12 5 0.09
13 42 0.78
ACGTcount: A:0.04, C:0.16, G:0.01, T:0.79
Consensus pattern (13 bp):
TTTTTTCTTTTCT
Found at i:57624053 original size:26 final size:26
Alignment explanation
Indices: 57624024--57624088 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
57624014 TTTTTTATTT
* *
57624024 TTTTTTCTTCTCTTTTTTTCTTTCCC
1 TTTTTTCTTCTCTTCTGTTCTTTCCC
* *
57624050 TTTTTTCTTTTCTTCTGTTCTTT-TC
1 TTTTTTCTTCTCTTCTGTTCTTTCCC
57624075 TTTTTT-TTC-CTTCT
1 TTTTTTCTTCTCTTCT
57624089 CCAAACCCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 5 0.15
24 2 0.06
25 7 0.21
26 20 0.59
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (26 bp):
TTTTTTCTTCTCTTCTGTTCTTTCCC
Found at i:57624253 original size:23 final size:24
Alignment explanation
Indices: 57624222--57624276 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
57624212 TTTTTTTCTT
*
57624222 TTTGGTTGCTATTTTTTTTGTTGA
1 TTTGCTTGCTATTTTTTTTGTTGA
* *
57624246 TTT-CTTGCTGTTTTTTTTGTTGC
1 TTTGCTTGCTATTTTTTTTGTTGA
57624269 TTTGCTTG
1 TTTGCTTG
57624277 TTTGGGTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.04, C:0.09, G:0.20, T:0.67
Consensus pattern (24 bp):
TTTGCTTGCTATTTTTTTTGTTGA
Found at i:57624806 original size:30 final size:30
Alignment explanation
Indices: 57624747--57624869 Score: 98
Period size: 30 Copynumber: 4.2 Consensus size: 30
57624737 GAAAAAAACA
*
57624747 TAATTTTAGAAAAA--TATGGG-CTAAAATG
1 TAATTTTA-AAAAATTTAAGGGCCTAAAATG
*
57624775 TAATTTCTAGAAAATTTAAGGGCCT-AAATG
1 TAATTT-TAAAAAATTTAAGGGCCTAAAATG
* **
57624805 TAA-TTTACAAAATATT-AGGGGTTAAAATG
1 TAATTTTAAAAAAT-TTAAGGGCCTAAAATG
* *
57624834 TAATTTTTAAAAAATTTAAGAG-CTAAAATT
1 TAA-TTTTAAAAAATTTAAGGGCCTAAAATG
57624864 TAATTT
1 TAATTT
57624870 ATATTTTTTG
Statistics
Matches: 77, Mismatches: 9, Indels: 17
0.75 0.09 0.17
Matches are distributed among these distances:
28 22 0.29
29 17 0.22
30 24 0.31
31 14 0.18
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.37
Consensus pattern (30 bp):
TAATTTTAAAAAATTTAAGGGCCTAAAATG
Found at i:57632931 original size:11 final size:11
Alignment explanation
Indices: 57632915--57632942 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
57632905 ACTAAAGCTC
57632915 CGGATTAGTTT
1 CGGATTAGTTT
57632926 CGGATTAGTTT
1 CGGATTAGTTT
57632937 CGGATT
1 CGGATT
57632943 CTACTTCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.11, G:0.29, T:0.43
Consensus pattern (11 bp):
CGGATTAGTTT
Found at i:57633917 original size:21 final size:21
Alignment explanation
Indices: 57633888--57633940 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
57633878 GTTCACTATG
*
57633888 TTGCGACATCGACATTCCATA
1 TTGCAACATCGACATTCCATA
* *
57633909 TTGCAACATCAACATTCCGTA
1 TTGCAACATCGACATTCCATA
57633930 TTGCAACATCG
1 TTGCAACATCG
57633941 TGGCTAGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (21 bp):
TTGCAACATCGACATTCCATA
Found at i:57645391 original size:28 final size:28
Alignment explanation
Indices: 57645323--57645392 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
57645313 CCGAATATAA
* *
57645323 TAAATATATATTTTATATTTTTTAAATTT
1 TAAA-ATAAATTTTTTATTTTTTAAATTT
* * *
57645352 TAAAAT-ACTTTTTTATTTTTTTATTTT
1 TAAAATAAATTTTTTATTTTTTAAATTT
57645379 TAAAATAAATTTTT
1 TAAAATAAATTTTT
57645393 GGTGTTTATT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 22 0.65
28 8 0.24
29 4 0.12
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (28 bp):
TAAAATAAATTTTTTATTTTTTAAATTT
Found at i:57657874 original size:35 final size:35
Alignment explanation
Indices: 57657796--57657866 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 35
57657786 TTTTGTGCCC
* *
57657796 TTTT-TTTTTATTTTTAATCTCCCTTCTTCAAAAT
1 TTTTATTTTTAATTTTAATCTCCCTTCTACAAAAT
*
57657830 TTTTATTTTTAATTTT-ATCTTCCTTCTACAAAAT
1 TTTTATTTTTAATTTTAATCTCCCTTCTACAAAAT
57657864 TTT
1 TTT
57657867 ACCTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 23 0.70
35 10 0.30
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (35 bp):
TTTTATTTTTAATTTTAATCTCCCTTCTACAAAAT
Found at i:57660766 original size:29 final size:29
Alignment explanation
Indices: 57660733--57660788 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
57660723 ACAAGAATGC
*
57660733 TTGATTTTATTGATTATGATTAGGTTTAG
1 TTGATTTTATTGATTAAGATTAGGTTTAG
* *
57660762 TTGATTTTATTGCTTAAGTTTAGGTTT
1 TTGATTTTATTGATTAAGATTAGGTTT
57660789 TTAGATGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.02, G:0.20, T:0.57
Consensus pattern (29 bp):
TTGATTTTATTGATTAAGATTAGGTTTAG
Found at i:57662930 original size:6 final size:6
Alignment explanation
Indices: 57662921--57662949 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
57662911 ATAGAAGTAG
57662921 AACATT AACATT AACATT AACATT AACAT
1 AACATT AACATT AACATT AACATT AACAT
57662950 CCTTCCCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (6 bp):
AACATT
Found at i:57667733 original size:24 final size:24
Alignment explanation
Indices: 57667706--57667757 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
57667696 TTAGTAAGTC
*
57667706 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
57667730 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
57667754 AAAT
1 AAAT
57667758 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:57669703 original size:24 final size:24
Alignment explanation
Indices: 57669676--57669727 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
57669666 TTAGTAAGTC
*
57669676 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
57669700 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
57669724 AAAT
1 AAAT
57669728 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:57670571 original size:27 final size:27
Alignment explanation
Indices: 57670514--57670565 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
57670504 TAGATTAAGA
*
57670514 TTTGATTTTAATTATTATTATTTAAATT
1 TTTG-TTTTAATTATTATTACTTAAATT
57670542 TTTGTTTTAATT-TTA-TACTTAAAT
1 TTTGTTTTAATTATTATTACTTAAAT
57670566 AATTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 3 0.13
27 8 0.35
28 4 0.17
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (27 bp):
TTTGTTTTAATTATTATTACTTAAATT
Found at i:57671455 original size:22 final size:22
Alignment explanation
Indices: 57671430--57671491 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 22
57671420 AATTATAAAT
57671430 TATTGATATTATTTAAATAATA
1 TATTGATATTATTTAAATAATA
*
57671452 TATTG-CA--ATTTAAA-AATTA
1 TATTGATATTATTTAAATAA-TA
57671471 TATT-ATATT-TTTGAAATAATA
1 TATTGATATTATTT-AAATAATA
57671492 AAAAAGAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 13
0.68 0.04 0.28
Matches are distributed among these distances:
18 2 0.06
19 14 0.44
20 3 0.09
21 6 0.19
22 7 0.22
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TATTGATATTATTTAAATAATA
Found at i:57672171 original size:21 final size:20
Alignment explanation
Indices: 57672146--57672184 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
57672136 TCTAATTTCG
*
57672146 AATTTAATAAATTTTTATTCA
1 AATTT-ATAAAATTTTATTCA
*
57672167 AATTTTTAAAATTTTATT
1 AATTTATAAAATTTTATT
57672185 TGTAAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTTATAAAATTTTATTCA
Found at i:57675377 original size:32 final size:32
Alignment explanation
Indices: 57675336--57675399 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
57675326 GCAAGTAAGC
57675336 TAACTGAAGCTTAGTAAGTTCAATTAGTTAAA
1 TAACTGAAGCTTAGTAAGTTCAATTAGTTAAA
57675368 TAACTGAAGCTTAGTAAGTTCAATTAGTTAAA
1 TAACTGAAGCTTAGTAAGTTCAATTAGTTAAA
57675400 CATAAATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (32 bp):
TAACTGAAGCTTAGTAAGTTCAATTAGTTAAA
Found at i:57675701 original size:21 final size:21
Alignment explanation
Indices: 57675675--57675743 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
57675665 AATGGAAGCT
57675675 CATAAGAGCTAAACGAAAACC
1 CATAAGAGCTAAACGAAAACC
* * * *
57675696 CATAAGGGTTAAAC-AGAAGCT
1 CATAAGAGCTAAACGA-AAACC
* * *
57675717 CAAAAGAGCTTAACGGAAACC
1 CATAAGAGCTAAACGAAAACC
57675738 CATAAG
1 CATAAG
57675744 GGTTAAATAG
Statistics
Matches: 34, Mismatches: 12, Indels: 4
0.68 0.24 0.08
Matches are distributed among these distances:
20 1 0.03
21 33 0.97
ACGTcount: A:0.48, C:0.20, G:0.19, T:0.13
Consensus pattern (21 bp):
CATAAGAGCTAAACGAAAACC
Found at i:57675737 original size:42 final size:42
Alignment explanation
Indices: 57675622--57675819 Score: 211
Period size: 42 Copynumber: 4.7 Consensus size: 42
57675612 GTCTGAAGGC
* * * *
57675622 TAAACAGAAGCTCATGAGAGATAAACAGAAACCCATAA-GGT
1 TAAATAGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGT
* * *
57675663 TGAATGGAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGT
1 TAAATAGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGT
* * *
57675705 TAAACAGAAGCTCAAAAGAGCTTAACGGAAACCCATAAGGGT
1 TAAATAGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGT
* ** * * *
57675747 TAAATAGAAGCTTA-ATAGAGCTAAACAAAAACTCATATGAGT
1 TAAATAGAAGCTCATA-AGAGCTAAACGGAAACCCATAAGGGT
* *
57675789 TGAATAGAAGCTCATGAGAGCTAAACGGAAA
1 TAAATAGAAGCTCATAAGAGCTAAACGGAAA
57675820 GTAAACACGA
Statistics
Matches: 128, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
41 32 0.25
42 96 0.75
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (42 bp):
TAAATAGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGT
Found at i:57680322 original size:22 final size:23
Alignment explanation
Indices: 57680294--57680354 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
57680284 GTTAATAATT
*
57680294 AAATAAATATTTTAAAATC-TAA
1 AAATAAATATATTAAAATCTTAA
* *
57680316 AAATAAATATATTATATTCTTAA
1 AAATAAATATATTAAAATCTTAA
*
57680339 AAATAAAAATA-TAAAA
1 AAATAAATATATTAAAA
57680355 GTTAAAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 19 0.59
23 13 0.41
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATAAATATATTAAAATCTTAA
Found at i:57682371 original size:41 final size:41
Alignment explanation
Indices: 57682312--57682392 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
57682302 CACATGGCCG
* * * *
57682312 TGTGGTAGGTCATGTGGGTCACGC-AGTCATGTGGTAGACCA
1 TGTGGTAGGCCATATGGGTCACACGA-CCATGTGGTAGACCA
*
57682353 TGTGGTAGGCCGTATGGGTCACACGACCATGTGGTAGACC
1 TGTGGTAGGCCATATGGGTCACACGACCATGTGGTAGACC
57682393 GTATGGGTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 33 0.97
42 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.25
Consensus pattern (41 bp):
TGTGGTAGGCCATATGGGTCACACGACCATGTGGTAGACCA
Found at i:57682380 original size:29 final size:29
Alignment explanation
Indices: 57682348--57682427 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 29
57682338 TCATGTGGTA
57682348 GACCATGTGGTAGGCCGTATGGGTCACAC
1 GACCATGTGGTAGGCCGTATGGGTCACAC
*
57682377 GACCATGTGGTAGACCGTATGGGTCACAC
1 GACCATGTGGTAGGCCGTATGGGTCACAC
* *
57682406 AACCCTGTGGTAGGCCGTATGG
1 GACCATGTGGTAGGCCGTATGG
57682428 TGGCCCTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.21, C:0.24, G:0.34, T:0.21
Consensus pattern (29 bp):
GACCATGTGGTAGGCCGTATGGGTCACAC
Done.