Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 195 of 218
Found at i:57682480 original size:41 final size:41
Alignment explanation
Indices: 57682382--57682481 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 41
57682372 CACACGACCA
* **
57682382 TGTGGTAGACCGTATGGGTCACACAACCCTGTGGTAGGCCG
1 TGTGGTAGACCGTGTGGGTCACACAACAATGTGGTAGGCCG
* * * * *
57682423 TATGGTGGCCCTTGTGGGTCACACAACAATGTGGTAGGTTC-
1 TGTGGTAGACCGTGTGGGTCACACAACAATGTGGTAGG-CCG
*
57682464 TGTGGCAGACCGTGTGGG
1 TGTGGTAGACCGTGTGGG
57682482 CTATACGAGC
Statistics
Matches: 45, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
41 44 0.98
42 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.36, T:0.25
Consensus pattern (41 bp):
TGTGGTAGACCGTGTGGGTCACACAACAATGTGGTAGGCCG
Found at i:57682964 original size:47 final size:48
Alignment explanation
Indices: 57682896--57682988 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
57682886 GTTTAACCAT
57682896 ATATCTGTTCTGGCAACTTTA-TTGCGAT-TATAGTGGCTTGACCATCC
1 ATATCTGTTCTGGCAACTTTATTTGC-ATATATAGTGGCTTGACCATCC
* * * *
57682943 ATATCTGATTCTGG-TAGTTTATTTGCATATTTTGTGGCTTGACCAT
1 ATATCTG-TTCTGGCAACTTTATTTGCATATATAGTGGCTTGACCAT
57682989 ATTTATTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
47 14 0.36
48 25 0.64
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.43
Consensus pattern (48 bp):
ATATCTGTTCTGGCAACTTTATTTGCATATATAGTGGCTTGACCATCC
Found at i:57683871 original size:15 final size:15
Alignment explanation
Indices: 57683830--57683876 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
57683820 CATGCATAAC
57683830 TTGCTTTATACTTTAG
1 TTGCTTT-TACTTTAG
* *
57683846 TTAAC-TATACTTTAG
1 TT-GCTTTTACTTTAG
57683861 TTGCTTTTACTTTAG
1 TTGCTTTTACTTTAG
57683876 T
1 T
57683877 ACTTTAGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 1 0.04
15 20 0.80
16 3 0.12
17 1 0.04
ACGTcount: A:0.21, C:0.13, G:0.11, T:0.55
Consensus pattern (15 bp):
TTGCTTTTACTTTAG
Found at i:57684832 original size:23 final size:23
Alignment explanation
Indices: 57684784--57684834 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
57684774 AAGTTTATTA
* * *
57684784 GAAAAATTGTTTGGTTTGGGAGT
1 GAAATATTGTCTGGTTTGGGACT
57684807 GAAATATTGTCTGGATTT-GGACT
1 GAAATATTGTCTGG-TTTGGGACT
57684830 GAAAT
1 GAAAT
57684835 TAGAGTTGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.37
Consensus pattern (23 bp):
GAAATATTGTCTGGTTTGGGACT
Found at i:57686029 original size:29 final size:28
Alignment explanation
Indices: 57685994--57686090 Score: 113
Period size: 29 Copynumber: 3.4 Consensus size: 28
57685984 GTCACATGGT
57685994 CATGTGGTAGCTCGTGTGGGTTACACAAC
1 CATGTGGTAGC-CGTGTGGGTTACACAAC
* *
57686023 CGTGTGGTAGGCCGTGTGGGTTACACAGC
1 CATGTGGTA-GCCGTGTGGGTTACACAAC
* * *
57686052 CATATGGTAGCCTGTGTGGGTCACACGAC
1 CATGTGGTAGCC-GTGTGGGTTACACAAC
*
57686081 CATATGGTAG
1 CATGTGGTAG
57686091 ATTGTATGGG
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.05
29 54 0.92
30 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.34, T:0.26
Consensus pattern (28 bp):
CATGTGGTAGCCGTGTGGGTTACACAAC
Found at i:57686076 original size:27 final size:29
Alignment explanation
Indices: 57685998--57686106 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 29
57685988 CATGGTCATG
* * * *
57685998 TGGTAG-CTCGTGTGGGTTACACAACCGTG
1 TGGTAGCCT-GTGTGGGTCACACGACCATA
*
57686027 TGGTAGGCC-GTGTGGGTTACAC-AGCCATA
1 TGGTA-GCCTGTGTGGGTCACACGA-CCATA
57686056 TGGTAGCCTGTGTGGGTCACACGACCATA
1 TGGTAGCCTGTGTGGGTCACACGACCATA
** *
57686085 TGGTAGATTGTATGGGTCACAC
1 TGGTAGCCTGTGTGGGTCACAC
57686107 AATAATGTGG
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
28 4 0.06
29 62 0.90
30 2 0.03
31 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (29 bp):
TGGTAGCCTGTGTGGGTCACACGACCATA
Found at i:57687191 original size:25 final size:25
Alignment explanation
Indices: 57687162--57687232 Score: 88
Period size: 26 Copynumber: 2.8 Consensus size: 25
57687152 TCTGTTGATA
* *
57687162 GCTCTTCGGAGCATCCCGATTAAAG
1 GCTCTTTGGAGCTTCCCGATTAAAG
** *
57687187 GCTCTTTGTGAGCTTCCTAATTAATG
1 GCTCTTTG-GAGCTTCCCGATTAAAG
57687213 GCTCTTTGGAGCTTCCCGAT
1 GCTCTTTGGAGCTTCCCGAT
57687233 ATTGGCTCGC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 17 0.45
26 21 0.55
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (25 bp):
GCTCTTTGGAGCTTCCCGATTAAAG
Found at i:57691269 original size:18 final size:21
Alignment explanation
Indices: 57691248--57691292 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
57691238 GATAATAGCA
57691248 ATAACAATA-T-AAAA-AATG
1 ATAACAATAGTAAAAATAATG
*
57691266 ATAATAATAGTAAAAATAATG
1 ATAACAATAGTAAAAATAATG
57691287 ATAACA
1 ATAACA
57691293 TTATTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 8 0.36
19 1 0.05
20 4 0.18
21 9 0.41
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.24
Consensus pattern (21 bp):
ATAACAATAGTAAAAATAATG
Found at i:57693048 original size:130 final size:128
Alignment explanation
Indices: 57692766--57693146 Score: 406
Period size: 130 Copynumber: 2.9 Consensus size: 128
57692756 AATAAAGTCT
* ** **
57692766 GATGC-AATCTGCTCTACTACAACTTCAGAGAGAAAAGATCCATCATTTTAATCCGCTTC-ACTG
1 GATGCGAA-CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG-TTCTACTG
* * *
57692829 CAACTTCAGGAAGATAGAATTGATTTCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATT
64 CAACTTCAGG-AGATAGGATTGATTTCTTCAATCTACCCCACTGCAACTTCAAGGAGATAAGACT
*
57692894 G
128 A
* * * * * *
57692895 GATACGATCTGCTCTACTGCAACTTAAGAGAGATAAGGTCTGTGGTTTTAATCTGTTCTACTGCA
1 GATGCGAACTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGTTCTACTGCA
* * ** * * *
57692960 ACTTCAGAGAGATAGGATTGTTTTTTTTCTGTTTTCCCCACTGCAACTTCAGGGAGATAAGACTA
66 ACTTCAG-GAGATAGGATTG-ATTTCTTCAATCTACCCCACTGCAACTTCAAGGAGATAAGACTA
** *
57693025 GATGCGAACTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCTACTGCG
1 GATGCGAACTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGTTCTACTGCA
** ** * * *
57693090 ACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGTAACTTCAAGGAGAT
66 ACTTCA-GGAGATAGGATTGATTTCTTCAATCTACCCCACTGCAACTTCAAGGAGAT
57693147 GTGACTTGCC
Statistics
Matches: 208, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
128 3 0.01
129 94 0.45
130 110 0.53
131 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (128 bp):
GATGCGAACTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGTTCTACTGCA
ACTTCAGGAGATAGGATTGATTTCTTCAATCTACCCCACTGCAACTTCAAGGAGATAAGACTA
Found at i:57693638 original size:101 final size:100
Alignment explanation
Indices: 57693171--57694083 Score: 1061
Period size: 100 Copynumber: 9.1 Consensus size: 100
57693161 TCAATTTGTT
* * * * *
57693171 CGCCAGGGAAGTAAGATTCACTGTTGTGGCTTCAATCTTTTTAACCGCAATGTCGAGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
** * *
57693236 ATTCGTTGTTGTAGCTTCAATATGTTCCACTACAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
** ** * * * * *
57693271 CATCAGGGAAGTAAGATTCATTGTTGTGGCTTCAATCTTTTTAATTACAATGTCGGGAAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
* *
57693336 ATTCGCCGTTGTAGCTTTAATCTGTTCCACTACAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * *
57693371 TGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
* *
57693436 ATTCGCCGTTGTAGCTTTAATCTGTTCCACTACAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * * * * * *
57693471 TGTCAGGGAAGTAAGATTCACCGTTGTTGCTTCAATCTTTTTAATTTCAATGTCGGGGAAGTAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
*
57693536 ATTCGCCGTTGTAGCTTCAATCTGTTCTACTGCAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * *
57693571 CACCTGGGAAAGTAAGATTCGCTATTGTAGCTTCAATCTTTTCAACCGCAATATCGGGGAAGCAA
1 CGCCAGGG-AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
*
57693636 GATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * *
57693672 CGCCTGGGAAAGTAAAATTCGCTGTTGTAGTTTCAATATTTTCAACTGCAATGTCGAGGAAGCAA
1 CGCCAGGG-AAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
* *
57693737 GATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCAT
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
** ** * * * * *
57693773 CGCCAGGGAAGTAAGATTTACCATTGTGGCTTCAATCTTTTGAATTGCCATGTCGGGGAAGTAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
* *
57693838 ATTCACCGTTGCAGCTTCAATCTGTTCCACTGCAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * *
57693873 CGCCTGAGAAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGTAA
1 CGCCAG-GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
*
57693938 GATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * **** * *
57693974 CGCCTGAGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGCACCACCAGGGAAGTAA
1 CGCCAG-GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
* * *
57694039 GATTCACCGTTGTAGCTTCAATCTATTCCACTACAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
*
57694075 CGCTAGGGA
1 CGCCAGGGA
57694084 TATGAGATCT
Statistics
Matches: 709, Mismatches: 102, Indels: 4
0.87 0.13 0.00
Matches are distributed among these distances:
100 358 0.50
101 351 0.50
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (100 bp):
CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
Found at i:57694063 original size:50 final size:50
Alignment explanation
Indices: 57693174--57694076 Score: 662
Period size: 50 Copynumber: 18.0 Consensus size: 50
57693164 ATTTGTTCGC
* * * * ** * **
57693174 CAGGGAAGTAAGATTCACTGTTGTGGCTTCAATCTTTTTAACCGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* ** * * *
57693224 C-GAGGAAGCAAGATTCGTTGTTGTAGCTTCAATATGTTCCACTACACCAT
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
*** * * ** * * **
57693274 CAGGGAAGTAAGATTCATTGTTGTGGCTTCAATCTTTTTAATTACAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * * *
57693324 C-GGGAAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTACACTGC
1 CAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * ** * **
57693374 CAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * * *
57693424 CGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTACACTGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * ** * * **
57693474 CAGGGAAGTAAGATTCACCGTTGTTGCTTCAATCTTTTTAATTTCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * **
57693524 CGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCTACTGCACCAC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* ** * * * ***
57693574 CTGGGAAAGTAAGATTCGCTATTGTAGCTTCAATCTTTTCAACCGCAATAT
1 CAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * *
57693625 CGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * * * * * **
57693675 CTGGGAAAGTAAAATTCGCTGTTGTAGTTTCAATATTTTCAACTGCAATGT
1 CAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * *
57693726 C-GAGGAAGCAAGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGC
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
** * * * ** * *
57693776 CAGGGAAGTAAGATTTACCATTGTGGCTTCAATCTTTTGAATTGC-CATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC-CGT
* * * *
57693826 CGGGGAAGTAAGATTCACCGTTGCAGCTTCAATCTGTTCCACTGCACCGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * ** * * * **
57693876 CTGAGAAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTCAACTGCAATGT
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * *
57693927 CGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * * * **
57693977 CTGAGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGCACCAC
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
* * *
57694028 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACCG
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
57694077 CTAGGGATAT
Statistics
Matches: 668, Mismatches: 173, Indels: 24
0.77 0.20 0.03
Matches are distributed among these distances:
49 4 0.01
50 494 0.74
51 170 0.25
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGT
Found at i:57694245 original size:44 final size:44
Alignment explanation
Indices: 57694197--57694398 Score: 117
Period size: 44 Copynumber: 4.6 Consensus size: 44
57694187 CTTTGATCTG
57694197 CTCCACTACTGCTTAGGGAGACAGGATCTACAATTTTCGACCTA
1 CTCCACTACTGCTTAGGGAGACAGGATCTACAATTTTCGACCTA
* * * ***** ** * *
57694241 CTCCACTACTTCTTAGAGAGATAGGA-CTGGTGGTTTAAATCTG
1 CTCCACTACTGCTTAGGGAGACAGGATCTACAATTTTCGACCTA
* * * * * *
57694284 CTTCC-CTACTACCTT-GGGAAGAGAAGAT-TCACCATCTTT-GATCTG
1 C-TCCACTACT-GCTTAGGG-AGACAGGATCT-ACAAT-TTTCGACCTA
** *
57694329 CTCCACTACAACTTAGGGAGACAGGATCTACAATCTTCGACCTA
1 CTCCACTACTGCTTAGGGAGACAGGATCTACAATTTTCGACCTA
* *
57694373 CTCCACTGCTGCTTAGGGAGATAGGA
1 CTCCACTACTGCTTAGGGAGACAGGA
57694399 CTAATGGCTT
Statistics
Matches: 114, Mismatches: 34, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
43 18 0.16
44 79 0.69
45 14 0.12
46 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGACAGGATCTACAATTTTCGACCTA
Found at i:57694262 original size:132 final size:131
Alignment explanation
Indices: 57694089--57694408 Score: 451
Period size: 132 Copynumber: 2.4 Consensus size: 131
57694079 AGGGATATGA
* * * * *
57694089 GATCTGCAATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGACTAATGGCTTAAATCTAAT
1 GATCTACAATCTTCGACCTACTCCACTCTT-CTTAGGGAGATAGGACTAATGGCTTAAATCTAAT
* * **
57694154 TCCCTACTACCTTAGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGAC
65 TCCCTACTACCTTAGGAAGAGAAGATTCACCATCTTTGATCTGCTCCACTACAACTTAGGGAGAC
57694219 AG
130 AG
* * ** * **
57694221 GATCTACAATTTTCGACCTACTCCACTACTTCTTAGAGAGATAGGACTGGTGGTTTAAATCTGCT
1 GATCTACAATCTTCGACCTACTCCACT-CTTCTTAGGGAGATAGGACTAATGGCTTAAATCTAAT
*
57694286 TCCCTACTACCTTGGGAAGAGAAGATTCACCATCTTTGATCTGCTCCACTACAACTTAGGGAGAC
65 TCCCTACTACCTTAGGAAGAGAAGATTCACCATCTTTGATCTGCTCCACTACAACTTAGGGAGAC
57694351 AG
130 AG
*
57694353 GATCTACAATCTTCGACCTACTCCACTGCTGCTTAGGGAGATAGGACTAATGGCTT
1 GATCTACAATCTTCGACCTACTCCACT-CTTCTTAGGGAGATAGGACTAATGGCTT
57694409 CACCAATTTG
Statistics
Matches: 163, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
132 161 0.99
133 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
GATCTACAATCTTCGACCTACTCCACTCTTCTTAGGGAGATAGGACTAATGGCTTAAATCTAATT
CCCTACTACCTTAGGAAGAGAAGATTCACCATCTTTGATCTGCTCCACTACAACTTAGGGAGACA
G
Found at i:57695574 original size:6 final size:6
Alignment explanation
Indices: 57695563--57695624 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
57695553 TGGCCTCTCC
* *
57695563 TTTTCT TTTTC- TTTTCT TCTTCT TCTTTC- TTTT-T TCTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT TTTTCT TTTTCT
* *
57695609 TTTTCT CTCTCT TTTT
1 TTTTCT TTTTCT TTTT
57695625 TTAAACATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
5 11 0.25
6 30 0.68
7 3 0.07
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTCT
Found at i:57695588 original size:14 final size:15
Alignment explanation
Indices: 57695564--57695614 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
57695554 GGCCTCTCCT
*
57695564 TTTCTTTTTCTTTTC
1 TTTCTTCTTCTTTTC
57695579 -TTCTTCTTC-TTTC
1 TTTCTTCTTCTTTTC
*
57695592 TTTTTTCTTCTTTTTC
1 TTTCTTCTTC-TTTTC
57695608 TTT-TTCT
1 TTTCTTCT
57695615 CTCTCTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 4 0.13
16 7 0.23
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTCTTCTTTTC
Found at i:57695590 original size:20 final size:20
Alignment explanation
Indices: 57695565--57695614 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
57695555 GCCTCTCCTT
57695565 TTCTTTTTCTTTTCTTCTTC
1 TTCTTTTTCTTTTCTTCTTC
*
57695585 TTCTTTCTT-TTTTCTTCTTT
1 TTCTTT-TTCTTTTCTTCTTC
57695605 TTCTTTTTCT
1 TTCTTTTTCT
57695615 CTCTCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
20 23 0.85
21 2 0.07
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (20 bp):
TTCTTTTTCTTTTCTTCTTC
Found at i:57695621 original size:28 final size:27
Alignment explanation
Indices: 57695557--57695625 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 27
57695547 TAACCTTGGC
*
57695557 CTCTC-CTTTTCTTTTTCTTTTCTTCTT
1 CTCTCTCTTTT-TTCTTCTTTTCTTCTT
* *
57695584 CTTCTTTCTTTTTTCTTCTTTTTCTTTTT
1 C-TCTCTCTTTTTTCTTC-TTTTCTTCTT
57695613 CTCTCTCTTTTTT
1 CTCTCTCTTTTTT
57695626 TAAACATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 1 0.03
28 19 0.54
29 15 0.43
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (27 bp):
CTCTCTCTTTTTTCTTCTTTTCTTCTT
Found at i:57695623 original size:17 final size:15
Alignment explanation
Indices: 57695565--57695614 Score: 64
Period size: 17 Copynumber: 3.1 Consensus size: 15
57695555 GCCTCTCCTT
57695565 TTCTTTTTCTTTTCTTC
1 TTCTTTTTC-TTT-TTC
57695582 TTCTTCTTTCTTTTTTC
1 TTCTT-TTTC-TTTTTC
57695599 TTCTTTTTCTTTTTC
1 TTCTTTTTCTTTTTC
57695614 T
1 T
57695615 CTCTCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.22
16 4 0.12
17 13 0.41
18 8 0.25
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTCTTTTTCTTTTTC
Found at i:57695625 original size:20 final size:20
Alignment explanation
Indices: 57695563--57695626 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 20
57695553 TGGCCTCTCC
*
57695563 TTTTCTTTTTCTTTTCTTCTTCT
1 TTTTCTTTTTC-TCTC-TCTT-T
57695586 TCTTTCTTTTT-TCT-TC--T
1 T-TTTCTTTTTCTCTCTCTTT
57695603 TTTTCTTTTTCTCTCTCTTT
1 TTTTCTTTTTCTCTCTCTTT
57695623 TTTT
1 TTTT
57695627 AAACATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
16 9 0.26
17 5 0.14
18 2 0.06
20 7 0.20
22 2 0.06
23 1 0.03
24 9 0.26
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTCTTTTTCTCTCTCTTT
Found at i:57704218 original size:5 final size:5
Alignment explanation
Indices: 57704208--57704246 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
57704198 GCCTAAGATG
* *
57704208 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
57704247 GTTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:57717237 original size:16 final size:16
Alignment explanation
Indices: 57717218--57717248 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57717208 CCTAAACTAA
*
57717218 TAAAGTAATAAATTAT
1 TAAACTAATAAATTAT
57717234 TAAACTAATAAATTA
1 TAAACTAATAAATTA
57717249 ACACATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
TAAACTAATAAATTAT
Found at i:57718970 original size:11 final size:11
Alignment explanation
Indices: 57718950--57718979 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
57718940 TAAAAAATAA
57718950 AAAAAGTATTTT
1 AAAAA-TATTTT
57718962 AAAAATATTTT
1 AAAAATATTTT
57718973 AAAAATA
1 AAAAATA
57718980 AAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:57721077 original size:22 final size:22
Alignment explanation
Indices: 57721046--57721088 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
57721036 AACTTTTTTC
*
57721046 TTGCTGCTATTTTGCTATTATA
1 TTGCTACTATTTTGCTATTATA
*
57721068 TTGCTACTATTTTGTTATTAT
1 TTGCTACTATTTTGCTATTAT
57721089 TGTTTTATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.58
Consensus pattern (22 bp):
TTGCTACTATTTTGCTATTATA
Found at i:57723095 original size:21 final size:21
Alignment explanation
Indices: 57723071--57723116 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
57723061 GGGAATTTGT
57723071 AAATCTAAAAGCTTTGGTTAG
1 AAATCTAAAAGCTTTGGTTAG
57723092 AAATCTAAAAGCTTTGGTTAG
1 AAATCTAAAAGCTTTGGTTAG
57723113 AAAT
1 AAAT
57723117 TTTAAGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (21 bp):
AAATCTAAAAGCTTTGGTTAG
Found at i:57724545 original size:29 final size:29
Alignment explanation
Indices: 57724508--57724563 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
57724498 ATTTATTACA
**
57724508 GTTAAGTGGGGTGATTTAGGGTTTAAATG
1 GTTAAGTGGAATGATTTAGGGTTTAAATG
* *
57724537 GTTAGGTGGAATGATTTCGGGTTTAAA
1 GTTAAGTGGAATGATTTAGGGTTTAAA
57724564 ATAAATGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.25, C:0.02, G:0.36, T:0.38
Consensus pattern (29 bp):
GTTAAGTGGAATGATTTAGGGTTTAAATG
Found at i:57725726 original size:28 final size:28
Alignment explanation
Indices: 57725666--57725725 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
57725656 TCACCAAAGC
* *
57725666 TTTTTGTGTTTGTTTCCTTATTACATGT
1 TTTTTGTGTTTGTTTCCTTATCAAATGT
* *
57725694 GTTTTGTGTTTGTTTCCTT-TCAAATTT
1 TTTTTGTGTTTGTTTCCTTATCAAATGT
57725721 TTTTT
1 TTTTT
57725726 TTGAAGTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.10, C:0.10, G:0.13, T:0.67
Consensus pattern (28 bp):
TTTTTGTGTTTGTTTCCTTATCAAATGT
Found at i:57727702 original size:16 final size:17
Alignment explanation
Indices: 57727670--57727702 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
57727660 AATAAAATAT
*
57727670 AAATTACAAACATAAAA
1 AAATTACAAACAAAAAA
57727687 AAATTA-AAACAAAAAA
1 AAATTACAAACAAAAAA
57727703 CTCCAACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (17 bp):
AAATTACAAACAAAAAA
Found at i:57732561 original size:13 final size:13
Alignment explanation
Indices: 57732543--57732579 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
57732533 AATGGCATAT
57732543 TATTCAAGCTCAA
1 TATTCAAGCTCAA
*
57732556 TATTCAAG-T-AT
1 TATTCAAGCTCAA
57732567 TATTCAAGCTCAA
1 TATTCAAGCTCAA
57732580 GAGGAAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
11 9 0.45
12 2 0.10
13 9 0.45
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (13 bp):
TATTCAAGCTCAA
Found at i:57736249 original size:3 final size:3
Alignment explanation
Indices: 57736241--57736282 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
57736231 ATTCCCACTC
57736241 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
57736283 CTTACCTCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:57737017 original size:15 final size:15
Alignment explanation
Indices: 57736989--57737030 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
57736979 GTTTCGTCTC
* *
57736989 TTCTATTCTGTTTCTT
1 TTCT-TTCTTTTTCTA
57737005 TTCTTTCTTTTTCTA
1 TTCTTTCTTTTTCTA
57737020 TTCTTTCTTTT
1 TTCTTTCTTTT
57737031 GTTTTATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (15 bp):
TTCTTTCTTTTTCTA
Found at i:57737054 original size:5 final size:5
Alignment explanation
Indices: 57737040--57737107 Score: 63
Period size: 5 Copynumber: 13.6 Consensus size: 5
57737030 TGTTTTATGT
*
57737040 ATATA TATATA ATATA ATAT- AT-TA ATAATA ATATA ATATA A-A-A ACATA
1 ATATA -ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA ATATA
57737088 ATCATTA ATATA ATATA ATA
1 AT-A-TA ATATA ATATA ATA
57737108 ATATTTTTTT
Statistics
Matches: 54, Mismatches: 1, Indels: 15
0.77 0.01 0.21
Matches are distributed among these distances:
3 3 0.06
4 6 0.11
5 30 0.56
6 11 0.20
7 4 0.07
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:57739398 original size:13 final size:13
Alignment explanation
Indices: 57739380--57739429 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
57739370 AATGACATAT
57739380 TATTCAAGCTCAA
1 TATTCAAGCTCAA
*
57739393 TATTCAAG-T-AT
1 TATTCAAGCTCAA
57739404 TATTCAAGCTCAA
1 TATTCAAGCTCAA
57739417 TATTCAAGCTCAA
1 TATTCAAGCTCAA
57739430 GAGGAAACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 9 0.27
12 2 0.06
13 22 0.67
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (13 bp):
TATTCAAGCTCAA
Found at i:57739409 original size:24 final size:24
Alignment explanation
Indices: 57739377--57739424 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
57739367 TTCAATGACA
57739377 TATTATTCAAGCTCAATATTCAAG
1 TATTATTCAAGCTCAATATTCAAG
57739401 TATTATTCAAGCTCAATATTCAAG
1 TATTATTCAAGCTCAATATTCAAG
57739425 CTCAAGAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (24 bp):
TATTATTCAAGCTCAATATTCAAG
Found at i:57740605 original size:3 final size:3
Alignment explanation
Indices: 57740597--57740629 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
57740587 TCCTATTTTT
57740597 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
57740630 TATTCAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:57749630 original size:24 final size:24
Alignment explanation
Indices: 57749603--57749652 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
57749593 TATATATATA
57749603 TATATATATTATAT-TTTTAGATTT
1 TATATATATTATATATTTT-GATTT
*
57749627 TATATATTTTATATATTTTGATTT
1 TATATATATTATATATTTTGATTT
57749651 TA
1 TA
57749653 AAATGATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (24 bp):
TATATATATTATATATTTTGATTT
Found at i:57749635 original size:9 final size:9
Alignment explanation
Indices: 57749580--57749645 Score: 57
Period size: 8 Copynumber: 7.4 Consensus size: 9
57749570 ATGAAATAAT
57749580 TTTTATA-A
1 TTTTATATA
*
57749588 ATTTATATA
1 TTTTATATA
*
57749597 -TATATATA
1 TTTTATATA
*
57749605 TATATATTATA
1 T-TTTA-TATA
*
57749616 TTTT-TAGA
1 TTTTATATA
57749624 TTTTATATA
1 TTTTATATA
57749633 TTTTATATA
1 TTTTATATA
57749642 TTTT
1 TTTT
57749646 GATTTTAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
8 20 0.42
9 17 0.35
10 6 0.12
11 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTATATA
Found at i:57752260 original size:56 final size:56
Alignment explanation
Indices: 57752174--57752285 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
57752164 TTACGATGTA
57752174 GGAGAGGCTATTTATATTAAATATGTTTTTGTTATCTTATAGTAAAGTCCCAAACT
1 GGAGAGGCTATTTATATTAAATATGTTTTTGTTATCTTATAGTAAAGTCCCAAACT
*
57752230 GGAGAGGCTATTTATATTAACTATGTTTTTGTTATCTTATAGTAAAGTCCCAAACT
1 GGAGAGGCTATTTATATTAAATATGTTTTTGTTATCTTATAGTAAAGTCCCAAACT
57752286 TTGAGGGGGA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (56 bp):
GGAGAGGCTATTTATATTAAATATGTTTTTGTTATCTTATAGTAAAGTCCCAAACT
Found at i:57752745 original size:22 final size:24
Alignment explanation
Indices: 57752720--57752768 Score: 75
Period size: 22 Copynumber: 2.1 Consensus size: 24
57752710 GATATCAGCC
57752720 AAAGGAAAGAA-AAAAA-AAACAA
1 AAAGGAAAGAATAAAAATAAACAA
*
57752742 AAAGGAAAGAATAAAAATAAAGAA
1 AAAGGAAAGAATAAAAATAAACAA
57752766 AAA
1 AAA
57752769 CTGATGAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.46
23 5 0.21
24 8 0.33
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.04
Consensus pattern (24 bp):
AAAGGAAAGAATAAAAATAAACAA
Found at i:57755450 original size:15 final size:15
Alignment explanation
Indices: 57755430--57755459 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57755420 TAATCCTTAA
*
57755430 TAATTATCTTAATAT
1 TAATTATCCTAATAT
57755445 TAATTATCCTAATAT
1 TAATTATCCTAATAT
57755460 GATTAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:57758949 original size:18 final size:18
Alignment explanation
Indices: 57758926--57758962 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
57758916 TACCTAGCTT
*
57758926 TCAATATCGATACCAAAA
1 TCAATATCGAGACCAAAA
57758944 TCAATATCGAGACCAAAA
1 TCAATATCGAGACCAAAA
57758962 T
1 T
57758963 TGTAACACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.22, G:0.08, T:0.22
Consensus pattern (18 bp):
TCAATATCGAGACCAAAA
Found at i:57760659 original size:20 final size:20
Alignment explanation
Indices: 57760616--57760679 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
57760606 CAAACGTCAG
* *
57760616 AAAAGAAAATTTGAGAAAA-G
1 AAAAGAAAATTTTA-AAAATT
57760636 AAAAGAAAATTTTAAAAATT
1 AAAAGAAAATTTTAAAAATT
*
57760656 AAAATTAAAA--TT-AAAATT
1 AAAA-GAAAATTTTAAAAATT
57760674 AAAAGA
1 AAAAGA
57760680 GTATCCCAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 1 0.03
18 10 0.26
19 6 0.16
20 17 0.45
21 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.23
Consensus pattern (20 bp):
AAAAGAAAATTTTAAAAATT
Found at i:57760661 original size:6 final size:6
Alignment explanation
Indices: 57760650--57760677 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
57760640 GAAAATTTTA
57760650 AAAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAA
57760678 GAGTATCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:57767490 original size:16 final size:16
Alignment explanation
Indices: 57767469--57767502 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
57767459 CAGAAAACTA
57767469 AAAGTCTTCCAGTTTC
1 AAAGTCTTCCAGTTTC
*
57767485 AAAGTCTTCTAGTTTC
1 AAAGTCTTCCAGTTTC
57767501 AA
1 AA
57767503 CGTCCAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (16 bp):
AAAGTCTTCCAGTTTC
Found at i:57772344 original size:18 final size:18
Alignment explanation
Indices: 57772321--57772355 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
57772311 CCCAGCTTTT
57772321 AATATCGATACCAAAATC
1 AATATCGATACCAAAATC
57772339 AATATCGATACCAAAAT
1 AATATCGATACCAAAAT
57772356 TGCTTTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.20, G:0.06, T:0.23
Consensus pattern (18 bp):
AATATCGATACCAAAATC
Found at i:57773193 original size:29 final size:29
Alignment explanation
Indices: 57773133--57773205 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
57773123 GCAAATAATA
* *
57773133 ATAAGCACCAAAGTGCAAAATAATATTCG
1 ATAAGCACCAAAGTGCAAAATAACAATCG
* *
57773162 ATAAGCACCAAAGTGCAAATTTTACAAT-G
1 ATAAGCACCAAAGTGCAAA-ATAACAATCG
*
57773191 ATAAGCACCGAAGTG
1 ATAAGCACCAAAGTG
57773206 TGAAATAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 34 0.89
30 4 0.11
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (29 bp):
ATAAGCACCAAAGTGCAAAATAACAATCG
Found at i:57776750 original size:65 final size:62
Alignment explanation
Indices: 57776676--57776812 Score: 154
Period size: 65 Copynumber: 2.2 Consensus size: 62
57776666 TATGCACATA
* ** *
57776676 TGGTTCGAATATATATATTTAAAGTTC-TTGAGCTGAA-TTTAATGTATG-AATTTTACTTACAT
1 TGGTTCGAATATAGAT-TACAAA-TTCTTTGAGCTGAATTTTAATGT-TGTAA-ATTA--TACAT
57776738 ATG
60 ATG
*
57776741 TGGTTCGAATATAGGTTACAAATTCTTTGAGCTGAATTTTAATGTTGTAAATTATACATATG
1 TGGTTCGAATATAGATTACAAATTCTTTGAGCTGAATTTTAATGTTGTAAATTATACATATG
57776803 TGGTTCGAAT
1 TGGTTCGAAT
57776813 GTTTGTTTGC
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
62 18 0.28
63 3 0.05
64 19 0.30
65 24 0.38
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (62 bp):
TGGTTCGAATATAGATTACAAATTCTTTGAGCTGAATTTTAATGTTGTAAATTATACATATG
Found at i:57776984 original size:41 final size:41
Alignment explanation
Indices: 57776927--57777207 Score: 370
Period size: 41 Copynumber: 6.9 Consensus size: 41
57776917 TATATGAGAT
* *
57776927 TTTCAGGCTTAATGCCTAGCAGGCTTGATGTCGGTGGATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
57776968 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
57777009 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTG-ATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
57777049 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
* * * *
57777090 TTTTAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
* * * * * *
57777131 ATTCCGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAAATGA
1 TTTCAGGCTTAATGCCTAGCAGGC-TTGATGCCGGTG-AATTA
* * ** *
57777173 -ATCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTG
57777208 TTTTATATAG
Statistics
Matches: 220, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 42 0.19
41 171 0.78
42 7 0.03
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (41 bp):
TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
Found at i:57777150 original size:122 final size:121
Alignment explanation
Indices: 57776927--57777207 Score: 366
Period size: 122 Copynumber: 2.3 Consensus size: 121
57776917 TATATGAGAT
* * *
57776927 TTTCAGGCTTAATGCCTAGCAGGCTTGATGTCGGTGGATTATTTCAGGCTTAATGCCTAGCAGGC
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTCAGACTTAATGCCTAGCAGGC
* * *
57776992 TTGATGCCGGTGAATTATTTCAGGCTTAATGCCTAGCAGGC-TTGATGCCGGTGATTA
66 TTGATGCCGGTGAATTAATTCAGACTTAATGCCTAGCAGGCTTTG-TGCCGGTGA-AA
* * *
57777049 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGC
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTCAGACTTAATGCCTAGCAGGC
* * *
57777114 TTGATGCCGGTGAATTAATTCCGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAA
66 TTGATGCCGGTGAATTAATTCAGACTTAATGCCTAGCAGGCTTTGTGCCGGTGAAA
* * ** *
57777170 TGAATCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 T--TTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTG
57777208 TTTTATATAG
Statistics
Matches: 139, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
121 2 0.01
122 104 0.75
123 33 0.24
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (121 bp):
TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTCAGACTTAATGCCTAGCAGGC
TTGATGCCGGTGAATTAATTCAGACTTAATGCCTAGCAGGCTTTGTGCCGGTGAAA
Found at i:57777899 original size:14 final size:15
Alignment explanation
Indices: 57777875--57777909 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
57777865 TACTTTAATC
57777875 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
57777890 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
57777905 ATGGT
1 ATGGT
57777910 AATATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:57784103 original size:163 final size:163
Alignment explanation
Indices: 57783833--57784154 Score: 450
Period size: 163 Copynumber: 2.0 Consensus size: 163
57783823 TATATGAGAT
* *
57783833 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGGATTATTTCAGGCTTAATGCCTAGCAGGC
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTCAGACTTAATGCCTAGCAGGC
* * * * * *
57783898 TTGATGCCGGTGGATTATTTCAGGCTTAATGCCTAGCAGGC-TTGATGCCGGTG-GATTATTTCA
66 TTGATGCCGGTGAATTAATTCAGACTTAATGCCTAGCAGGCTTTG-TGCCGGTGAAATGA-ATCA
57783961 GGCTTAATGCCTAGCAGGCTTGATGCCGGTGATTA
129 GGCTTAATGCCTAGCAGGCTTGATGCCGGTGATTA
* * *
57783996 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTTAGACTTTATGTCTAGCAGGC
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTCAGACTTAATGCCTAGCAGGC
* * * *
57784061 TTGATGCCGGTGAATTAATTCTGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGAATCGGG
66 TTGATGCCGGTGAATTAATTCAGACTTAATGCCTAGCAGGCTTTGTGCCGGTGAAATGAATCAGG
** *
57784126 CTTTGTGCCTAGCAGGCTTTATGCCGGTG
131 CTTAATGCCTAGCAGGCTTGATGCCGGTG
57784155 TTTTATATAG
Statistics
Matches: 139, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
163 133 0.96
164 6 0.04
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (163 bp):
TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTATTTCAGACTTAATGCCTAGCAGGC
TTGATGCCGGTGAATTAATTCAGACTTAATGCCTAGCAGGCTTTGTGCCGGTGAAATGAATCAGG
CTTAATGCCTAGCAGGCTTGATGCCGGTGATTA
Found at i:57784168 original size:41 final size:41
Alignment explanation
Indices: 57783833--57784154 Score: 443
Period size: 41 Copynumber: 7.9 Consensus size: 41
57783823 TATATGAGAT
*
57783833 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGGATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
*
57783874 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGGATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
*
57783915 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGGATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
57783956 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTG-ATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
57783996 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
* * * *
57784037 TTTTAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
* * * * * *
57784078 ATTCTGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAAATGA
1 TTTCAGGCTTAATGCCTAGCAGGC-TTGATGCCGGTG-AATTA
* * ** *
57784120 -ATCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTG
57784155 TTTTATATAG
Statistics
Matches: 263, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
40 42 0.16
41 214 0.81
42 7 0.03
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (41 bp):
TTTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTA
Found at i:57784846 original size:14 final size:15
Alignment explanation
Indices: 57784822--57784856 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
57784812 TACTTTAATC
57784822 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
57784837 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
57784852 ATGGT
1 ATGGT
57784857 AATATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:57789152 original size:24 final size:23
Alignment explanation
Indices: 57789087--57789134 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
57789077 AATTAGTACC
57789087 TGATAGAATAACATTATGACACG
1 TGATAGAATAACATTATGACACG
57789110 TGATAGAATAACATTATGACACG
1 TGATAGAATAACATTATGACACG
57789133 TG
1 TG
57789135 GCATAAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (23 bp):
TGATAGAATAACATTATGACACG
Found at i:57795355 original size:35 final size:37
Alignment explanation
Indices: 57795282--57795371 Score: 94
Period size: 36 Copynumber: 2.5 Consensus size: 37
57795272 AAGTTGTTTA
**
57795282 TATATAAAATTTTAATAAATAAATAAAAATATATTTT
1 TATATAAAAAATTAATAAATAAATAAAAATATATTTT
** *
57795319 TATATAAAAAATTAA-AAAT-AATATGAATATTTTTT
1 TATATAAAAAATTAATAAATAAATAAAAATATATTTT
* *
57795354 TAAAATTAAAAATTAATA
1 T-ATATAAAAAATTAATA
57795372 TAGATGAGTC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
35 14 0.32
36 16 0.36
37 14 0.32
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (37 bp):
TATATAAAAAATTAATAAATAAATAAAAATATATTTT
Found at i:57797870 original size:26 final size:27
Alignment explanation
Indices: 57797832--57797889 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 27
57797822 TAATTTGGAC
* *
57797832 TTAAAATTTAAAAAATGTATAAA-AAT
1 TTAAAAATAAAAAAATGTATAAACAAT
57797858 TTAAAAATAAAAAAATGTATAAACTAAT
1 TTAAAAATAAAAAAATGTATAAAC-AAT
57797886 TTAA
1 TTAA
57797890 CTTTAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 21 0.75
28 7 0.25
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (27 bp):
TTAAAAATAAAAAAATGTATAAACAAT
Found at i:57799087 original size:114 final size:114
Alignment explanation
Indices: 57798584--57799347 Score: 850
Period size: 114 Copynumber: 7.0 Consensus size: 114
57798574 TTTTTTTACT
* * *
57798584 TTTTTTAATTTTTTTCGTATATTTATATTTGACTCTGACACGAAAAAAAAAAGAAAAA-A--ATT
1 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACG--AAAAAAAAGAAAAATATTTTT
57798646 TT-AAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAATAAA
64 TTAAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAAA-AAA
* * * * *
57798698 TTTTTTTAAATTTTTTTCTTATATTTATATCTAACTTTGACAC---------G-AAATTTTTTTT
1 --TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAAAATATTTTT
* * * * **
57798753 TTTAAATTTGTACTGGGTGCTGGCC--CGGCAGGCCAGCACCCAAAAAAGT
64 TTAAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
* *
57798802 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACG-AAAAAAA-AAATATTTTTTTTT
1 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAAAATATTTTTTT
* * *
57798865 TAAATTTGTACTAGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAAAA
66 AAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
** *
57798914 AATTTAAATTTTTTTCGTATATTTATATCTAACTCTGACAC-------AA-AAAAA-A----TTT
1 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAAAATATTTTTTT
57798966 AAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
66 AAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
57799015 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAAAATATTTTTTT
1 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAAAATATTTTTTT
* * *
57799080 AAAATTTGTATTGGGTGCCGGCCATTGACAGGCCAACACCCAAAAAAAT
66 AAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
*
57799129 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACATGAAAAAAAAAAGAAAAATA-TTTT
1 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACG--AAAAAAAAGAAAAATATTTTT
* ****
57799193 TTAAAATTTGTATTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTT
64 TTAAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
*
57799244 TTTTTAAA-TTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAA-AGTAAAT-TTTTTT
1 TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGA-AAAATATTTTTT
** * *
57799306 T-TTA-CTGT--TGAGTGCCGGCCATTGACAGGCCAGCACCCAAAA
65 TAAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
57799348 TTTTTTTTCC
Statistics
Matches: 566, Mismatches: 50, Indels: 72
0.82 0.07 0.10
Matches are distributed among these distances:
101 87 0.15
102 38 0.07
104 4 0.01
105 6 0.01
106 20 0.04
107 4 0.01
108 56 0.10
109 5 0.01
110 36 0.06
111 2 0.00
112 75 0.13
114 122 0.22
115 59 0.10
116 52 0.09
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.36
Consensus pattern (114 bp):
TTTTTAAATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAAAATATTTTTTT
AAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAA
Found at i:57799565 original size:19 final size:18
Alignment explanation
Indices: 57799533--57799578 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
57799523 TTATTTTAGT
*
57799533 AATTA-TTTTAAAATTTA
1 AATTATTTTTAAAATATA
57799550 AATTATTTTTACAAATATA
1 AATTATTTTTA-AAATATA
*
57799569 ATTTATTTTT
1 AATTATTTTT
57799579 GGATTAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.20
18 5 0.20
19 15 0.60
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
AATTATTTTTAAAATATA
Found at i:57800040 original size:23 final size:22
Alignment explanation
Indices: 57799996--57800040 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
57799986 TTTTTTTACT
* **
57799996 ATTTTTAAATATTTTATTTTTA
1 ATTTTTAAATATTTAAAGTTTA
57800018 ATTTTATAAATATTTAAAGTTTA
1 ATTTT-TAAATATTTAAAGTTTA
57800041 TATATAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTTTAAATATTTAAAGTTTA
Found at i:57801511 original size:76 final size:76
Alignment explanation
Indices: 57801384--57801529 Score: 188
Period size: 76 Copynumber: 1.9 Consensus size: 76
57801374 TGTAACGACC
* * *
57801384 CGATAGTCAGGGGTGTCGAAAAGTGCATTCCTGAGATTTCGTTCCCGTAAATCAAACTCGTAAAT
1 CGATAGTCAGGGGTATCGAAAAGTGCATTCCTGAGATCTCATTCCCGTAAATCAAACTCGTAAAT
57801449 ATTTAACAACT
66 ATTTAACAACT
* * * **
57801460 CGATAGTCAGGGGTATCGGAAAGTGTATT-CTCGAGA-CTCTATTCTCGTAAATCGGACTCGTAA
1 CGATAGTCAGGGGTATCGAAAAGTGCATTCCT-GAGATCTC-ATTCCCGTAAATCAAACTCGTAA
57801523 ATATTTA
64 ATATTTA
57801530 TTAAAAATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
75 4 0.07
76 56 0.93
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (76 bp):
CGATAGTCAGGGGTATCGAAAAGTGCATTCCTGAGATCTCATTCCCGTAAATCAAACTCGTAAAT
ATTTAACAACT
Found at i:57802299 original size:19 final size:20
Alignment explanation
Indices: 57802272--57802309 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
57802262 TTTAGGCAAC
*
57802272 TATTGAATA-AAAATTGAAA
1 TATTCAATATAAAATTGAAA
*
57802291 TATTCAATATGAAATTGAA
1 TATTCAATATAAAATTGAA
57802310 TTGTGTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.53, C:0.03, G:0.11, T:0.34
Consensus pattern (20 bp):
TATTCAATATAAAATTGAAA
Found at i:57802547 original size:5 final size:5
Alignment explanation
Indices: 57802519--57802570 Score: 70
Period size: 5 Copynumber: 10.4 Consensus size: 5
57802509 CACTTTGATT
* *
57802519 ATTGA ATTGA TTTAA AGTTG- ATTGA ATTGA ATTGA ATTGA ATTGA ATTGA
1 ATTGA ATTGA ATTGA A-TTGA ATTGA ATTGA ATTGA ATTGA ATTGA ATTGA
57802569 AT
1 AT
57802571 ATGTGTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
4 3 0.07
5 36 0.88
6 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.42
Consensus pattern (5 bp):
ATTGA
Found at i:57805303 original size:19 final size:17
Alignment explanation
Indices: 57805270--57805304 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
57805260 CTTTATTTTA
57805270 TTTAAGAATAAATTAAG
1 TTTAAGAATAAATTAAG
57805287 TTTATAGAATGAAATTAA
1 TTTA-AGAAT-AAATTAA
57805305 ATCATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (17 bp):
TTTAAGAATAAATTAAG
Found at i:57818046 original size:11 final size:11
Alignment explanation
Indices: 57818030--57818055 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57818020 TAAGCATATA
57818030 TATTTTTAATT
1 TATTTTTAATT
57818041 TATTTTTAATT
1 TATTTTTAATT
57818052 TATT
1 TATT
57818056 AGGAAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTTTTAATT
Found at i:57862024 original size:31 final size:31
Alignment explanation
Indices: 57861986--57862044 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
57861976 AAAAAAACTT
57861986 ACTTAAAT-AAAAGCTTTTGAATAATTTAATG
1 ACTTAAATGAAAA-CTTTTGAATAATTTAATG
* *
57862017 ACTTAAATGAAAATTTTTGAATAGTTTA
1 ACTTAAATGAAAACTTTTGAATAATTTA
57862045 GTGATCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (31 bp):
ACTTAAATGAAAACTTTTGAATAATTTAATG
Found at i:57867969 original size:27 final size:27
Alignment explanation
Indices: 57867934--57867988 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
57867924 AAACTGTTGG
*
57867934 TTTCATTTTTTCTCTTATTTTCAATTTT
1 TTTCATTTTATCTCTTATTTT-AATTTT
*
57867962 TTTC-TTTTATCTCTTCTTTTAATTTT
1 TTTCATTTTATCTCTTATTTTAATTTT
57867988 T
1 T
57867989 AATTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.28
27 14 0.56
28 4 0.16
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTCATTTTATCTCTTATTTTAATTTT
Found at i:57868223 original size:17 final size:17
Alignment explanation
Indices: 57868201--57868235 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
57868191 GGTGTCTAAA
57868201 AACTATATTTTTAAGTT
1 AACTATATTTTTAAGTT
*
57868218 AACTATGTTTTTAAGTT
1 AACTATATTTTTAAGTT
57868235 A
1 A
57868236 TTCCATGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (17 bp):
AACTATATTTTTAAGTT
Found at i:57869458 original size:31 final size:31
Alignment explanation
Indices: 57869423--57869487 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
57869413 CTTTCAGATC
57869423 TTTCATTCAAGTCATTGAACTATTTAAAAAT
1 TTTCATTCAAGTCATTGAACTATTTAAAAAT
* * * * *
57869454 TTTCATTTAGGTTATTGAACTATTTGAAAGT
1 TTTCATTCAAGTCATTGAACTATTTAAAAAT
57869485 TTT
1 TTT
57869488 TATTTGAGTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (31 bp):
TTTCATTCAAGTCATTGAACTATTTAAAAAT
Found at i:57875879 original size:31 final size:31
Alignment explanation
Indices: 57875830--57875971 Score: 113
Period size: 31 Copynumber: 4.6 Consensus size: 31
57875820 AATGATCACC
* *
57875830 GAACTCTTCGAAAGTTTTCATTTAAGTCATT
1 GAACTATTCAAAAGTTTTCATTTAAGTCATT
* *
57875861 GAACTATTCAAAAATTTTCATTTAGGTCATT
1 GAACTATTCAAAAGTTTTCATTTAAGTCATT
* * ** * * ***
57875892 AAACTCTTTGAAAGTTTTTATTTAAATTGCT
1 GAACTATTCAAAAGTTTTCATTTAAGTCATT
* * * * * *
57875923 AAATTATTCAAAAATTCTCATTTAGGTTATT
1 GAACTATTCAAAAGTTTTCATTTAAGTCATT
57875954 GAACTATTCAAAAGTTTT
1 GAACTATTCAAAAGTTTT
57875972 TATGTAAATC
Statistics
Matches: 81, Mismatches: 30, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (31 bp):
GAACTATTCAAAAGTTTTCATTTAAGTCATT
Found at i:57875908 original size:62 final size:62
Alignment explanation
Indices: 57875831--57875984 Score: 173
Period size: 62 Copynumber: 2.5 Consensus size: 62
57875821 ATGATCACCG
* * * *
57875831 AACTCTTCGAAAGTTTTCATTTAAGTCATTGAACTATTCAAAAATTTTCATTTAGGTCATTA
1 AACTCTTCGAAAGTTTTCATTTAAATCACTAAACTATTCAAAAATTCTCATTTAGGTCATTA
* * ** * * *
57875893 AACTCTTTGAAAGTTTTTATTTAAATTGCTAAATTATTCAAAAATTCTCATTTAGGTTATTG
1 AACTCTTCGAAAGTTTTCATTTAAATCACTAAACTATTCAAAAATTCTCATTTAGGTCATTA
* * * *
57875955 AACTATTCAAAAGTTTTTATGTAAATCACT
1 AACTCTTCGAAAGTTTTCATTTAAATCACT
57875985 GAGTTGTTAA
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
62 75 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (62 bp):
AACTCTTCGAAAGTTTTCATTTAAATCACTAAACTATTCAAAAATTCTCATTTAGGTCATTA
Found at i:57881737 original size:29 final size:30
Alignment explanation
Indices: 57881704--57881783 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 30
57881694 TCTCTATAAT
57881704 GTTATATTTCTGTGACTACATTCTTAGTAA
1 GTTATATTTCTGTGACTACATTCTTAGTAA
*** * * *
57881734 -TTATATTTCAAAGAATCACTTTCTTTGTAA
1 GTTATATTTCTGTGACT-ACATTCTTAGTAA
57881764 TGTTATATTTCTGTGACTAC
1 -GTTATATTTCTGTGACTAC
57881784 GACCACTCGA
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
29 12 0.32
30 11 0.30
31 2 0.05
32 12 0.32
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47
Consensus pattern (30 bp):
GTTATATTTCTGTGACTACATTCTTAGTAA
Found at i:57892308 original size:125 final size:124
Alignment explanation
Indices: 57892080--57892356 Score: 448
Period size: 125 Copynumber: 2.2 Consensus size: 124
57892070 TTCCTCTCAA
* * *
57892080 TTTCCAGGACCTACTGTA-ACAAAAGCGCGTCCAAGAGGGCGCGATTTCACAAGTTCTTCTCAAA
1 TTTCCAGGACCTACTGTAGA-AAAAGCGCGTCCAAGAGGCCGCGATTTCACAAATTCTTATCAAA
* * *
57892144 TAGCATCCTGCTAGAAGCGATTTTATACTATTTGTTCAGAAACGTCAACTCGAAATTATT
65 CAGCATCCAGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
*
57892204 TCTTCCAGGACCTACTGTAGAAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTATCAAA
1 T-TTCCAGGACCTACTGTAGAAAAAGCGCGTCCAAGAGGCCGCGATTTCACAAATTCTTATCAAA
57892269 CAGCATCCAGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
65 CAGCATCCAGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
* *
57892329 TTTTCAGGACCTACTGTAGCAAAAGCGC
1 TTTCCAGGACCTACTGTAGAAAAAGCGC
57892357 ATAAACATAG
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
124 26 0.18
125 115 0.81
126 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (124 bp):
TTTCCAGGACCTACTGTAGAAAAAGCGCGTCCAAGAGGCCGCGATTTCACAAATTCTTATCAAAC
AGCATCCAGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
Found at i:57893055 original size:21 final size:19
Alignment explanation
Indices: 57893016--57893091 Score: 68
Period size: 20 Copynumber: 3.8 Consensus size: 19
57893006 AAAAATAATA
57893016 TAAAAAT-ATTCAAAAAATTT
1 TAAAAATAATTC--AAAATTT
57893036 TAATAAAATAATTCAAAA-TT
1 T-A-AAAATAATTCAAAATTT
57893056 TAAAAA-AATTCTAAAAATTT
1 TAAAAATAATTC--AAAATTT
57893076 TAAAAATAATATCAAA
1 TAAAAATAAT-TCAAA
57893092 TACTCATCAA
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
17 5 0.10
18 4 0.08
19 5 0.10
20 15 0.31
21 8 0.17
22 7 0.15
23 4 0.08
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAAATAATTCAAAATTT
Found at i:57893060 original size:40 final size:39
Alignment explanation
Indices: 57893016--57893091 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
57893006 AAAAATAATA
*
57893016 TAAAAATATTCAAAAAATTTTAATAAAATAAT-TCAAAATT
1 TAAAAAAATTCAAAAAATTTT-A-AAAATAATATCAAAATT
*
57893056 TAAAAAAATTCTAAAAATTTTAAAAATAATATCAAA
1 TAAAAAAATTCAAAAAATTTTAAAAATAATATCAAA
57893092 TACTCATCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 8 0.24
39 6 0.18
40 19 0.58
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (39 bp):
TAAAAAAATTCAAAAAATTTTAAAAATAATATCAAAATT
Found at i:57898527 original size:173 final size:175
Alignment explanation
Indices: 57898142--57898535 Score: 465
Period size: 174 Copynumber: 2.3 Consensus size: 175
57898132 AATTCATGCC
* * * * *
57898142 AATCAATTTGAATGGTTTACTTTTTTAATACCTTGTTACAATAC-TCAAAAAGCACTTCTTCAAC
1 AATCAACTTGAATGATTTAC-TTTTTAATACCCTATTACAACACTTCAAAAAGCACTTCTTCAAC
* * * *
57898206 TTCAACAAAGTGCACGAATAAACTTTCCGAACAAGGATAATACACTTCAACACATCAAATTCATC
65 TTCAACAAAGTGCAAGAATAAACTTTCCGAACAAAGATAACACACTTCAACACATCAAATTCAGC
* * * ** * *
57898271 TCCTTCTACATTAGTAAGAATATTCATGTCAATTAAGTTAAGACTT
130 TCCTCCTACATTAGTAAGAACATCCATACCAATCAAGTTAAGAATT
* * * *
57898317 AATCAACTTAAATGATTTACTTTTTAATACCCTATTACAACACTTCAACAA-TACTTTTTCAACT
1 AATCAACTTGAATGATTTACTTTTTAATACCCTATTACAACACTTCAAAAAGCACTTCTTCAACT
*** * * *
57898381 TCAGTGAAGTGCAAGAATAAATTTTCCGAACAAAGATAACACACTTCAACATACTCAAA-TGAGC
66 TCAACAAAGTGCAAGAATAAACTTTCCGAACAAAGATAACACACTTCAACACA-TCAAATTCAGC
* *
57898445 -CCTCCTATATTAGTAAGAACGTCCATACCAATCAAGTTAA-AATT
130 TCCTCCTACATTAGTAAGAACATCCATACCAATCAAGTTAAGAATT
*
57898489 GAATTAACTTGAATGATTTACTTTTTAATACCCTATTACAACACTTC
1 -AATCAACTTGAATGATTTACTTTTTAATACCCTATTACAACACTTC
57898536 GAATTAACTT
Statistics
Matches: 186, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
172 3 0.02
173 76 0.41
174 79 0.42
175 28 0.15
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (175 bp):
AATCAACTTGAATGATTTACTTTTTAATACCCTATTACAACACTTCAAAAAGCACTTCTTCAACT
TCAACAAAGTGCAAGAATAAACTTTCCGAACAAAGATAACACACTTCAACACATCAAATTCAGCT
CCTCCTACATTAGTAAGAACATCCATACCAATCAAGTTAAGAATT
Found at i:57901587 original size:30 final size:30
Alignment explanation
Indices: 57901544--57901602 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
57901534 AAAGTTATAT
*
57901544 TTTAAAATCTATAATAATAATAATTTTTTAA
1 TTTAAAATCTATAAAAATAAT-ATTTTTTAA
* *
57901575 TTTAATAT-TATAAAAATTATATTTTTTA
1 TTTAAAATCTATAAAAATAATATTTTTTA
57901603 TTATCGTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.32
30 10 0.40
31 7 0.28
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
TTTAAAATCTATAAAAATAATATTTTTTAA
Found at i:57904633 original size:14 final size:14
Alignment explanation
Indices: 57904614--57904651 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
57904604 GATTGGCTGT
57904614 AAAATGTTTTCTGG
1 AAAATGTTTTCTGG
*
57904628 AAAATGATTTCTGG
1 AAAATGTTTTCTGG
57904642 AAAATGTTTT
1 AAAATGTTTT
57904652 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (14 bp):
AAAATGTTTTCTGG
Found at i:57904660 original size:20 final size:20
Alignment explanation
Indices: 57904635--57904674 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57904625 TGGAAAATGA
*
57904635 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
57904655 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
57904675 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:57904666 original size:34 final size:35
Alignment explanation
Indices: 57904620--57904686 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
57904610 CTGTAAAATG
*
57904620 TTTTCTGGAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGGAAAATGATTTACTGGAAAATATTTTAC
*
57904654 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGGAAAATGATTTACTGGAAAATATTTT
57904687 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.46
Consensus pattern (35 bp):
TTTTCTGGAAAATGATTTACTGGAAAATATTTTAC
Found at i:57904789 original size:20 final size:20
Alignment explanation
Indices: 57904761--57904837 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
57904751 TCCGGAAAAG
57904761 TTATTTTTACATATATTAAA
1 TTATTTTTACATATATTAAA
* *
57904781 TTGTTTTTACATATATATTAA
1 TTATTTTTACATATAT-TAAA
* *
57904802 TAAATTTTT--ATATTTTAAA
1 T-TATTTTTACATATATTAAA
57904821 TTATTTTTACATATATT
1 TTATTTTTACATATATT
57904838 GCAATGATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
18 6 0.13
19 4 0.09
20 26 0.58
21 4 0.09
22 5 0.11
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (20 bp):
TTATTTTTACATATATTAAA
Found at i:57904876 original size:18 final size:18
Alignment explanation
Indices: 57904853--57904888 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
57904843 GATTTATTTA
57904853 TAAATAAATAAATCAAAT
1 TAAATAAATAAATCAAAT
* *
57904871 TAAATATATCAATCAAAT
1 TAAATAAATAAATCAAAT
57904889 GGTTTAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATAAATAAATCAAAT
Found at i:57907161 original size:21 final size:22
Alignment explanation
Indices: 57907127--57907172 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
57907117 GAGGATGTGG
57907127 AAGAAGATTTGCTTAGAAGAGA
1 AAGAAGATTTGCTTAGAAGAGA
57907149 AAGAAGA-TTGCTTAGAAGAGA
1 AAGAAGATTTGCTTAGAAGAGA
57907170 AAG
1 AAG
57907173 GAGAAAGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.48, C:0.04, G:0.28, T:0.20
Consensus pattern (22 bp):
AAGAAGATTTGCTTAGAAGAGA
Found at i:57928227 original size:94 final size:95
Alignment explanation
Indices: 57928061--57928300 Score: 247
Period size: 94 Copynumber: 2.6 Consensus size: 95
57928051 AAGCTTGGGT
* *
57928061 GGTGTATGTTTTATAACTTTGTAAAATTTAGGTAAGTG-CTTTAAGAGGCTAGAAGCAATCATTC
1 GGTGTATGCTTTATAACTTTGTAAAATTTAGCTAAGTGTCTTTAAGAGGCTAGAAGCAATCATTC
* * * *
57928125 TATGAAACTTAGTGAGCAATTTCCTTTTAG-
66 TATGAAACTTAGCGACCAATTT-CGTGTAGA
* * * * * *
57928155 GGTGTTTGCTTTATAACTTTATAAAATTTAGCTAAGTGTC-TTATGAGGTTAGAAGTGATTC-TT
1 GGTGTATGCTTTATAACTTTGTAAAATTTAGCTAAGTGTCTTTAAGAGGCTAGAAG-CAATCATT
* * *
57928218 TTATTAAACTTAGCGACCAATTTCGTGTCGA
65 CTATGAAACTTAGCGACCAATTTCGTGTAGA
* * * * *
57928249 GGTGTCTACTTTAAAACTTTGTAAAATGTAGCTAAGTGT-TTTAAAAGGCTAG
1 GGTGTATGCTTTATAACTTTGTAAAATTTAGCTAAGTGTCTTTAAGAGGCTAG
57928301 CAACTTTTCT
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
93 4 0.03
94 111 0.93
95 4 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (95 bp):
GGTGTATGCTTTATAACTTTGTAAAATTTAGCTAAGTGTCTTTAAGAGGCTAGAAGCAATCATTC
TATGAAACTTAGCGACCAATTTCGTGTAGA
Found at i:57931106 original size:9 final size:9
Alignment explanation
Indices: 57931077--57931113 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
57931067 TGAGTTTTCG
57931077 AATTCGAAT
1 AATTCGAAT
*
57931086 AACTCGAAT
1 AATTCGAAT
57931095 AATTCGAAT
1 AATTCGAAT
*
57931104 AATTTGAAT
1 AATTCGAAT
57931113 A
1 A
57931114 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:57931225 original size:29 final size:29
Alignment explanation
Indices: 57931165--57931227 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
57931155 CTTTTTTACT
* ** *
57931165 TTTCCCTCAAAACTTTTACTCCTTTCCAC
1 TTTCCCCCAAAACTTTTACTCCCCTACAC
57931194 TTTCCCCCAGAAACTTTTACTCCCCTAC-C
1 TTTCCCCCA-AAACTTTTACTCCCCTACAC
57931223 TTTCC
1 TTTCC
57931228 AACTCCCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.19, C:0.41, G:0.02, T:0.38
Consensus pattern (29 bp):
TTTCCCCCAAAACTTTTACTCCCCTACAC
Found at i:57939043 original size:18 final size:18
Alignment explanation
Indices: 57939022--57939061 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
57939012 CCTAAAAACT
57939022 AAAAAAAAAACCCAAAAG
1 AAAAAAAAAACCCAAAAG
* * *
57939040 AAAAAAAGAATCGAAAAG
1 AAAAAAAAAACCCAAAAG
57939058 AAAA
1 AAAA
57939062 TCAAGGTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.78, C:0.10, G:0.10, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAACCCAAAAG
Found at i:57942485 original size:43 final size:43
Alignment explanation
Indices: 57942420--57942503 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
57942410 CCACTCATCC
57942420 CAACCCCCACCACCGCCACCTTCCCTCTCACTCCTCACCGTCT
1 CAACCCCCACCACCGCCACCTTCCCTCTCACTCCTCACCGTCT
* * *
57942463 CAACCCCCACCATCGTTC-CCTTCCCTTTCACTCCTCACCGT
1 CAACCCCCACCACCG-CCACCTTCCCTCTCACTCCTCACCGT
57942504 TGATCTCACC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.15, C:0.57, G:0.05, T:0.23
Consensus pattern (43 bp):
CAACCCCCACCACCGCCACCTTCCCTCTCACTCCTCACCGTCT
Found at i:57946390 original size:29 final size:29
Alignment explanation
Indices: 57946336--57946392 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
57946326 ATTAAAACAA
* * *
57946336 AAAAAATTTTAAATGTTAGTATCTAAAAT
1 AAAAAATTTTAAATGTAAATAACTAAAAT
57946365 AAAAAATTTTAAAAT-TAAATAACTAAAA
1 AAAAAATTTT-AAATGTAAATAACTAAAA
57946393 CAGAAATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (29 bp):
AAAAAATTTTAAATGTAAATAACTAAAAT
Found at i:57948410 original size:23 final size:22
Alignment explanation
Indices: 57948384--57948428 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
57948374 TATTTAATTT
*
57948384 TTTATTGAAGTTATATTATAAAA
1 TTTATTGAA-ATATATTATAAAA
*
57948407 TTTATTTAAATATATTATAAAA
1 TTTATTGAAATATATTATAAAA
57948429 ATTAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTATTGAAATATATTATAAAA
Found at i:57948423 original size:22 final size:24
Alignment explanation
Indices: 57948395--57948451 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
57948385 TTATTGAAGT
*
57948395 TATATTATAAAATTTATT-TA-AA
1 TATATTATAAAATTAATTATATAA
57948417 TATATTATAAAAATTAATTATATAA
1 TATATTAT-AAAATTAATTATATAA
57948442 TATAATTATA
1 TAT-ATTATA
57948452 GTATTTGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.27
23 9 0.30
24 2 0.07
25 6 0.20
26 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TATATTATAAAATTAATTATATAA
Found at i:57948866 original size:15 final size:15
Alignment explanation
Indices: 57948823--57948871 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
57948813 ATAACTTAAA
*
57948823 TTCAACATTTAA-TT
1 TTCAACACTTAATTT
*
57948837 TTCTAATACTT-ATTT
1 TTC-AACACTTAATTT
57948852 TTCAACACTTAATTT
1 TTCAACACTTAATTT
57948867 TTCAA
1 TTCAA
57948872 TTTATCAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 10 0.34
15 19 0.66
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:57957883 original size:29 final size:30
Alignment explanation
Indices: 57957848--57957905 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
57957838 TTACTTTAAC
57957848 GTGTAATATTATAAAT-AAATTTTAATTTT
1 GTGTAATATTATAAATGAAATTTTAATTTT
* *
57957877 GTGTAATTTTATATATGAAATTTTAATTT
1 GTGTAATATTATAAATGAAATTTTAATTT
57957906 GATCCAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (30 bp):
GTGTAATATTATAAATGAAATTTTAATTTT
Found at i:57963245 original size:20 final size:21
Alignment explanation
Indices: 57963206--57963250 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
57963196 ATATTTTCAA
*
57963206 TTATTTTAATTGTATTTTAT-
1 TTATTTTAATTGTATATTATC
57963226 TTATTTTAA-TGTTATATTATC
1 TTATTTTAATTG-TATATTATC
57963247 TTAT
1 TTAT
57963251 AAAAACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 2 0.09
20 16 0.73
21 4 0.18
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (21 bp):
TTATTTTAATTGTATATTATC
Found at i:57963741 original size:3 final size:3
Alignment explanation
Indices: 57963735--57963853 Score: 238
Period size: 3 Copynumber: 39.7 Consensus size: 3
57963725 TATAATAATC
57963735 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
57963783 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
57963831 AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AA
57963854 TGAGTCAAAC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 116 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:57970092 original size:15 final size:15
Alignment explanation
Indices: 57970072--57970121 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
57970062 TGTTAAAAAT
57970072 ATAATAATAATAGTA
1 ATAATAATAATAGTA
* *
57970087 ATAATATTAATATTA
1 ATAATAATAATAGTA
* *
57970102 ATGATAGTAATAGTA
1 ATAATAATAATAGTA
57970117 ATAAT
1 ATAAT
57970122 GAAGTTCGAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:57977488 original size:17 final size:18
Alignment explanation
Indices: 57977454--57977490 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
57977444 TTTTTAGAAT
*
57977454 TTAAAATTTCTAGAAAAA
1 TTAAAATTTATAGAAAAA
57977472 TTAAAATTTAT-GAAAAA
1 TTAAAATTTATAGAAAAA
57977489 TT
1 TT
57977491 TTCTAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (18 bp):
TTAAAATTTATAGAAAAA
Found at i:57977615 original size:21 final size:19
Alignment explanation
Indices: 57977560--57977615 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
57977550 TTTATACAAA
57977560 ATTTTGAATTTTTATATATT
1 ATTTTG-ATTTTTATATATT
** *
57977580 ATTTTGAAATTTATATTTAT
1 ATTTTGATTTTTATATAT-T
57977600 ATTTTAGATTTTTATA
1 ATTTT-GATTTTTATA
57977616 AAAATTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 9 0.31
20 12 0.41
21 8 0.28
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTTTGATTTTTATATATT
Found at i:57984437 original size:42 final size:42
Alignment explanation
Indices: 57984364--57984449 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
57984354 AAAGATTTTT
* * *
57984364 TGTCTCACATGGCCTAGTCACACGCCGATGTCATTGCTCGTG
1 TGTCTCACACGGCCTAGTCACACACCCATGTCATTGCTCGTG
* * *
57984406 TGTCTCACACGGCCTGAG-CACATACCCATGTCCTTGGTCGTG
1 TGTCTCACACGGCCT-AGTCACACACCCATGTCATTGCTCGTG
57984448 TG
1 TG
57984450 GTTTTAAAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 35 0.95
43 2 0.05
ACGTcount: A:0.16, C:0.31, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTCTCACACGGCCTAGTCACACACCCATGTCATTGCTCGTG
Found at i:57987574 original size:2 final size:2
Alignment explanation
Indices: 57987569--57987595 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
57987559 TCACACACAC
57987569 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
57987596 AAAGGACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57989665 original size:25 final size:26
Alignment explanation
Indices: 57989595--57989678 Score: 61
Period size: 25 Copynumber: 3.3 Consensus size: 26
57989585 ATATGTACAT
*
57989595 ATTATAAAA-ATGTATAAACATAT-A-A
1 ATTATAAAACATG-A-AAATATATAATA
*
57989620 ATTATAAAACGTGAAAATATA-AATA
1 ATTATAAAACATGAAAATATATAATA
* **
57989645 ATTATAAAATATGAATGTATATAAT-
1 ATTATAAAACATGAAAATATATAATA
57989670 ATATATAAA
1 AT-TATAAA
57989679 CTATATATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
24 7 0.15
25 30 0.62
26 11 0.23
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.33
Consensus pattern (26 bp):
ATTATAAAACATGAAAATATATAATA
Found at i:57989813 original size:3 final size:3
Alignment explanation
Indices: 57989799--57989852 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
57989789 ATATGTAAGT
* * *
57989799 ATA ATA AAA ATA ATA ATA GTA ATA ATA ATA ATA ATA ACT- ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
57989844 ATA A-A ATA A
1 ATA ATA ATA A
57989853 ACTAAAAACT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 3 0.07
3 38 0.90
4 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:57991965 original size:44 final size:44
Alignment explanation
Indices: 57991189--57991969 Score: 213
Period size: 44 Copynumber: 17.8 Consensus size: 44
57991179 GAATTACTGG
* * * * **
57991189 CTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCT--GCTCAGGGAGATAAGATCTGTAAT
* **
57991234 CTTCGATCTACTCCACTAATGC-CTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCTC-AGGGAGATAAGATCTGTAAT
* * * *
57991278 CTTCAATCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTAG
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTA--AT
* * * * **
57991321 CTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCT--GCTCAGGGAGATAAGATCTGTAAT
* **
57991366 CTTCGATCTACTCCACTAATGC-CTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCTC-AGGGAGATAAGATCTGTAAT
* * *
57991410 CTTCAATCTATTCCACTGCTGCTCAGGGAGAT-AGA-AT-TACT
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAAT
* * * * * ****
57991451 GGCTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATCCACCAT
1 --CTTCAATCTACTCCACTGCT--GCTCAGGGAGATAAGATCTGTAAT
** * * * * * * **
57991498 CTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATCTAAAAT
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAAT
* * * *
57991542 CTTCAATCTATTCCACTGCTGCCCAGGGA-AGT-AGA-AT-TACTAG
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGA-TAAGATCTGTA--AT
* * * * * * * *
57991585 CTTCAATGTACTCTACTG-TAACCACAAGGAGGTAAAAT-T-CACCAT
1 CTTCAATCTACTCCACTGCT--GCTCAGGGAGATAAGATCTGTA--AT
** * * * * * * *
57991630 CTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAAT
* * * * *
57991674 CTTTAATCTATTCCTCTGCTGC-CTAGGGA-AGT-AGA-AT-TACT
1 CTTCAATCTACTCCACTGCTGCTC-AGGGAGA-TAAGATCTGTAAT
* * * * * *
57991715 GGCTTCAATGTACTCCACTG-TAACCTCAAGGAGGTAAAATCTGTCAT
1 --CTTCAATCTACTCCACTGCT--GCTCAGGGAGATAAGATCTGTAAT
* **
57991762 CTTCGATCTACTCCACTAATGC-CTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCTC-AGGGAGATAAGATCTGTAAT
* * * *
57991806 CTTCAATC-ATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACT
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAAT
* * * * **
57991846 GGCTTCAATGTA-TACCACTG-TAACCTCAGGGAGGTAAAATCTGCCAT
1 --CTTCAATCTACT-CCACTGCT--GCTCAGGGAGATAAGATCTGTAAT
* **
57991893 CTTCGATCTACTCCACTAATGC-CTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCTC-AGGGAGATAAGATCTGTAAT
*
57991937 CTTCAATCTATTCCACTGCTGCTCAGGGAGATA
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATA
57991970 GAATTACTGG
Statistics
Matches: 514, Mismatches: 163, Indels: 119
0.65 0.20 0.15
Matches are distributed among these distances:
40 3 0.01
41 9 0.02
42 20 0.04
43 106 0.21
44 262 0.51
45 99 0.19
46 11 0.02
47 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAAT
Found at i:57991997 original size:43 final size:44
Alignment explanation
Indices: 57991806--57991997 Score: 114
Period size: 44 Copynumber: 4.4 Consensus size: 44
57991796 GATCTGTAAT
* *
57991806 CTTCAATC-ATTCCACTGCTGCCCAGGGAGATAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAGAATCTACTGG
* * * * * ***
57991848 CTTCAATGTA-TACCACTG-TAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACT-CCACTGCT--GCTCAGGGAGATAGAATCTACTGG
* ** *
57991893 CTTCGATCTACTCCACTAATGC-CTAGGGAGATA-AGATCTGTAAT--
1 CTTCAATCTACTCCACTGCTGCTC-AGGGAGATAGA-ATC--TACTGG
*
57991937 CTTCAATCTATTCCACTGCTGCTCAGGGAGATAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCTCAGGGAGATAGAATCTACTGG
*
57991980 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
57991998 TAACCACAGG
Statistics
Matches: 111, Mismatches: 24, Indels: 29
0.68 0.15 0.18
Matches are distributed among these distances:
41 3 0.03
42 9 0.08
43 25 0.23
44 54 0.49
45 17 0.15
46 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCTGCTCAGGGAGATAGAATCTACTGG
Found at i:57992172 original size:527 final size:528
Alignment explanation
Indices: 57991144--57993791 Score: 3946
Period size: 527 Copynumber: 5.0 Consensus size: 528
57991134 GCCGTCATGA
*
57991144 CTTCAATCTATTCCACTACACTACC-AGGGAAGTAAGAATTACTGGCTTCAATGTACTCCACTGT
1 CTTCAATCTATTCCACT--ACTGCCTAGGGAAGT-AGAATTACTGGCTTCAATGTACTCCACTGT
57991208 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCT
63 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCT
57991273 GTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACT
128 GTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACT
* * * * * * *
57991338 GTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGAT
193 GTAACCTCAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGAT
* *
57991403 CTGTAATCTTCAATCTATTCCACTGCTGCTCAGGG-AGATAGAATTACTGGCTTCAATGTACTCC
258 CTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCC
* *
57991467 ACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAA
322 ACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAA
* *
57991532 GATCTAAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACT
387 GATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACT
* * * *
57991597 CTACTGTAACCACA-AGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAG
452 CCACTGTAACCACAGA-GAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAG
* *
57991660 ACAAGATCTGAAAT
515 ATAAGATCTGTAAT
* * *
57991674 CTTTAATCTATTCCTCTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
57991739 CTCAAGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
*
57991804 ATCTTCAATC-ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTA-TACCACTGT
131 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACT-CCACTGT
* * * * * * *
57991867 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCT
195 AACCTCAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCT
* *
57991932 GTAATCTTCAATCTATTCCACTGCTGCTCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCAC
260 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCAC
* *
57991996 TGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGA
324 TGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGA
* *
57992061 TCTAAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCC
389 TCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCC
* * * * * *
57992126 ACTGTAACCACAGAAAGGTAAAAT-TCACCATCTTTGATCTGCCCCATTACTACTTAGGGAGACA
454 ACTGTAACCACAGAGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATA
*
57992190 AGATCTGAAAT
518 AGATCTGTAAT
* * * *
57992201 ATTTAATCTATTCCACTGCGGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
*
57992266 CTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
* *
57992331 ATCTTCAATCTATTCCACTGCTGCTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
131 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTA
* * * * *
57992396 ACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAAGGAGACAAGATCTA
196 ACCTCAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTG
*
57992461 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTG
261 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
* *
57992526 TAACCATAGGGAGGTAAAATTCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGATC
326 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATC
* * * *
57992591 TGAAATATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACGA-CTTTAATGTACTCTAC
391 TGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCAC
* * ** * * * *
57992655 TGTAACCTCAGTGAGGTAAAATCTGTTATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGA
456 TGTAACCACAGAGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
57992720 TCTGTAAT
521 TCTGTAAT
*
57992728 CTTCAATCTATTCCACTACTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTACTGCCTAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* ** * * * * * * *
57992792 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCCTAGGGAGACAAGATCTGA
65 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGT
*
57992857 AATCTTCAATCTATTCCACTGCTGTCCAGGGA-AGTAGAATTACTAGCTTCAATGTACTCCACTG
130 AATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTAGCTTCAATGTACTCCACTG
*
57992921 TAACCAT-AGGGAGGTAAAAT-TCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGA
194 TAACC-TCAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGA
* *
57992984 TCTGAAATATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCC
257 TCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCC
57993049 ACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAA
322 ACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAA
* *
57993114 GATCTGAAATTTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACGA-CTTCAATGTACT
387 GATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACT
* * * * * *
57993178 CCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTACTCCACTAATGCCTAGGGAGAT
452 CCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGAT
57993243 AAGATCTGTAAT
517 AAGATCTGTAAT
*
57993255 CTTCAATCTATTCCACTACTGCCTAGGG-AGATAGAATTACTGGCTTCAACGTACTCCACTGTAA
1 CTTCAATCTATTCCACTACTGCCTAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* ** * * * * * * * *
57993319 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCCTAGGGAGACAAGATTTGA
65 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGT
*
57993384 AATCTTCAATCTATTCCACTGCTGTCCAGGGA-AGTAGAATTACTAGCTTCAATGTACTCCACTG
130 AATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTAGCTTCAATGTACTCCACTG
*
57993448 TAACCAT-AGGGAGGTAAAAT-TCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGA
194 TAACC-TCAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGA
* *
57993511 TCTGAAATATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCC
257 TCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCC
57993576 ACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAA
322 ACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAA
* *
57993641 GATCTGAAATCTTTAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACT
387 GATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACT
* * * * *
57993706 CCACTATAACCACAGGGAGGAAAAATCTGCCATCTTTGATTTGCTCCACTACCGCTTAGGGAGAT
452 CCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGAT
57993771 AAGATCTGTAAT
517 AAGATCTGTAAT
57993783 CTTCAATCT
1 CTTCAATCT
57993792 TTTCTACTGC
Statistics
Matches: 1999, Mismatches: 107, Indels: 26
0.94 0.05 0.01
Matches are distributed among these distances:
526 4 0.00
527 1500 0.75
528 469 0.23
529 11 0.01
530 15 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (528 bp):
CTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTA
ACCTCAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTG
AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATC
TGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCAC
TGTAACCACAGAGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGTAAT
Found at i:57992361 original size:44 final size:44
Alignment explanation
Indices: 57992244--57992365 Score: 122
Period size: 44 Copynumber: 2.8 Consensus size: 44
57992234 GAATTACTGG
* * * *
57992244 CTTCAATGTACTCCACTGTAA-CCTCAGGGAGGTAAAATCTGTCAT
1 CTTCAATCTACTCCAC--TAATGCTCAGGGAGATAAAATCTGTAAT
* *
57992289 CTTCGATCTACTCCACTAATGC-CTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTAATGCTC-AGGGAGATAAAATCTGTAAT
* **
57992333 CTTCAATCTATTCCACTGCTGCTCAGGGAGATA
1 CTTCAATCTACTCCACTAATGCTCAGGGAGATA
57992366 GAATTACTGG
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.06
44 45 0.70
45 15 0.23
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTAATGCTCAGGGAGATAAAATCTGTAAT
Found at i:57992459 original size:659 final size:660
Alignment explanation
Indices: 57991144--57993801 Score: 3974
Period size: 659 Copynumber: 4.0 Consensus size: 660
57991134 GCCGTCATGA
* *
57991144 CTTCAATCTATTCCACTACACT-ACCAGGGAAGTAAGAATTACTGGCTTCAATGTACTCCACTGT
1 CTTCAATCTATTCCACT--GCTGCCCAGGGAAGT-AGAATTACTGGCTTCAATGTACTCCACTGT
57991208 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCT
63 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCT
*
57991273 GTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACT
128 GTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACT
* ** * *
57991338 GTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGAT
193 GTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTACCCCACTAATGCCTAGGGAGACAAGAT
* * *
57991403 CTGTAATCTTCAATCTATTCCACTGCTGCTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCA
258 CTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCA
57991468 CTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAG
323 CTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAG
* * *
57991533 ATCTAAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTC
388 ATCTGAAATATTCAATCTATTCCACTGCGGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTC
* * *
57991598 TACTGTAACCACAAGGAGGTAAAATTCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACA
453 CACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACA
* *
57991663 AGATCTGAAATCTTTAATCTATTCCTCTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTAC
518 AGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
* * *** * * * * *
57991728 TCCACTGTAACCTCAAGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTAATGCCTAGGGAGA
583 TCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGA
* *
57991793 TAAGATCTGTAAT
648 CAAGATCTGAAAT
57991806 CTTCAATC-ATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTA-TACCACTGTA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACT-CCACTGTA
57991868 ACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTG
64 ACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTG
*
57991933 TAATCTTCAATCTATTCCACTGCTGCTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTG
129 TAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTG
* * * * *
57991998 TAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATC
194 TAACCACAGGGAGGTAAAATCCACCATCTTCGATCTACCCCACTAATGCCTAGGGAGACAAGATC
*
57992063 TAAAATCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTACTAGCTTCAATGTACTCCA
259 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTAGCTTCAATGTACTCCA
** * *
57992127 CTGTAACCACAGAAAGGTAAAATTCACCATCTTTGATCTGCCCCATTACTACTTAGGGAGACAAG
323 CTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAG
* * *
57992192 ATCTGAAATATTTAATCTATTCCACTGCGGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTC
388 ATCTGAAATATTCAATCTATTCCACTGCGGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTC
* ** * * * * * *
57992257 CACTGTAACCTCAGGGAGGTAAAA-TCTGTCATCTTCGATCTACTCCACTAATGCCTAGGGAGAT
453 CACTGTAACCACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGAC
* * *
57992321 AAGATCTGTAATCTTCAATCTATTCCACTGCTGCTCAGGG-AGATAGAATTACTGGCTTCAATGT
517 AAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGT
* *
57992385 ACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAAGGA
581 ACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTGCTTAGGGA
*
57992450 GACAAGATCTAAAAT
646 GACAAGATCTGAAAT
*
57992465 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* ** * * * * *
57992530 CAT-AGGGAGGTAAAAT-TCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGATCTG
66 C-TCAGGGAGGTAAAATCT-GCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTG
* * * * * *
57992593 AAATATTTAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTAC-GACTTTAATGTACTCTACT
129 TAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACT
* * **** * *
57992656 GTAACCTCAGTGAGGTAAAATCTGTTATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGAT
193 GTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTACCCCACTAATGCCTAGGGAGACAAGAT
* * *
57992721 CTGTAATCTTCAATCTATTCCACTACTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCA
258 CTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCA
*
57992786 CTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCCTAGGGAGACAAG
323 CTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAG
* * *
57992851 ATCTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTC
388 ATCTGAAATATTCAATCTATTCCACTGCGGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTC
* *
57992916 CACTGTAACCATAGGGAGGTAAAATTCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACA
453 CACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACA
*
57992981 AGATCTGAAATATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
518 AGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
*
57993046 TCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGA
583 TCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGA
57993111 CAAGATCTGAAAT
648 CAAGATCTGAAAT
* * *
57993124 TTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTAC-GACTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
57993188 CTCAGGGAGGTAAAATCTGTCATCTTTGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
* * *
57993253 ATCTTCAATCTATTCCACTACTGCCTAGGGAGATAGAATTACTGGCTTCAACGTACTCCACTGTA
131 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* * * * *
57993318 ACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCCTAGGGAGACAAGATTTG
196 ACCACAGGGAGGTAAAATCCACCATCTTCGATCTACCCCACTAATGCCTAGGGAGACAAGATCTG
*
57993383 AAATCTTCAATCTATTCCACTGCTGTCCAGGGA-AGTAGAATTACTAGCTTCAATGTACTCCACT
261 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTAGCTTCAATGTACTCCACT
* * * *
57993447 GTAACCATAGGGAGGTAAAATTCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGAT
325 GTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGAT
* * *
57993512 CTGAAATATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCA
390 CTGAAATATTCAATCTATTCCACTGCGGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCA
57993577 CTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAG
455 CTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAG
*
57993642 ATCTGAAATCTTTAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTC
520 ATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTC
* * ** * * * *
57993707 CACTATAACCACAGGGAGGAAAAATCTGCCATCTTTGATTTGCTCCACTACCGCTTAGGGAGATA
585 CACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACA
*
57993772 AGATCTGTAAT
650 AGATCTGAAAT
* *
57993783 CTTCAATCTTTTCTACTGC
1 CTTCAATCTATTCCACTGC
57993802 AACTGAGGGA
Statistics
Matches: 1788, Mismatches: 188, Indels: 43
0.89 0.09 0.02
Matches are distributed among these distances:
657 1 0.00
658 117 0.07
659 1499 0.84
660 151 0.08
661 12 0.01
662 8 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (660 bp):
CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
ACCACAGGGAGGTAAAATCCACCATCTTCGATCTACCCCACTAATGCCTAGGGAGACAAGATCTG
AAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTG
TAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATC
TGAAATATTCAATCTATTCCACTGCGGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCAC
TGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGA
TCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCC
ACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAA
GATCTGAAAT
Found at i:57992724 original size:44 final size:44
Alignment explanation
Indices: 57992675--57992760 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
57992665 GTGAGGTAAA
* * *
57992675 ATCTGTTATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAG
1 ATCTGTAATCTTCAATCTACTCCACTAATGCCCAGGGAGATAAG
* *
57992719 ATCTGTAATCTTCAATCTATTCCACTACTGCCCAGGGAGATA
1 ATCTGTAATCTTCAATCTACTCCACTAATGCCCAGGGAGATA
57992761 GAATTACTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTGTAATCTTCAATCTACTCCACTAATGCCCAGGGAGATAAG
Found at i:57993250 original size:44 final size:44
Alignment explanation
Indices: 57993166--57993287 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
57993156 AGAATTACGA
* * *
57993166 CTTCAATGTACTCCACTGTAA--CCTCAGGGAGGTAAAATCTGTCAT
1 CTTCAATCTACTCCAC--TAATGCCT-AGGGAGATAAAATCTGTAAT
** *
57993211 CTTTGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTAATGCCTAGGGAGATAAAATCTGTAAT
* *
57993255 CTTCAATCTATTCCACTACTGCCTAGGGAGATA
1 CTTCAATCTACTCCACTAATGCCTAGGGAGATA
57993288 GAATTACTGG
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
43 3 0.05
44 46 0.71
45 16 0.25
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTAATGCCTAGGGAGATAAAATCTGTAAT
Found at i:57993832 original size:132 final size:132
Alignment explanation
Indices: 57991144--57993801 Score: 3698
Period size: 132 Copynumber: 20.1 Consensus size: 132
57991134 GCCGTCATGA
* *
57991144 CTTCAATCTATTCCACTACACT-ACCAGGGAAGTAAGAATTACTGGCTTCAATGTACTCCACTGT
1 CTTCAATCTATTCCACT--GCTGCCCAGGGAAGT-AGAATTACTGGCTTCAATGTACTCCACTGT
* * * * * * * *
57991208 AACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCT
63 AACCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCT
*
57991273 GTAAT
128 GAAAT
*
57991278 CTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTAGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * * * * * *
57991342 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGT
65 CCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57991407 AAT
130 AAT
*
57991410 CTTCAATCTATTCCACTGCTGCTCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
57991474 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATCTAA
65 CCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57991539 AAT
130 AAT
* *
57991542 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCTACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
57991607 CACAAGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57991671 AAT
130 AAT
* * *
57991674 CTTTAATCTATTCCTCTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * ** * * * * * * *
57991739 CTCAAGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
57991804 AT
131 AT
57991806 CTTCAATC-ATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTA-TACCACTGTA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACT-CCACTGTA
* * * * * * * *
57991868 ACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTG
64 ACCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTG
*
57991933 TAAT
129 AAAT
*
57991937 CTTCAATCTATTCCACTGCTGCTCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
57992001 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAGGGAGACAAGATCTAA
65 CCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57992066 AAT
130 AAT
*
57992069 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
** * *
57992134 CACAGAAAGGTAAAAT-TCACCATCTTTGATCTGCCCCATTACTACTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57992198 AAT
130 AAT
* * * *
57992201 ATTTAATCTATTCCACTGCGGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* ** * * * * * * *
57992266 CTCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
57992331 AT
131 AT
*
57992333 CTTCAATCTATTCCACTGCTGCTCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * *
57992397 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCTTAAGGAGACAAGATCTAA
65 CCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57992462 AAT
130 AAT
*
57992465 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
57992530 CATAGGGAGGTAAAAT-TCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57992594 AAT
130 AAT
* * * * *
57992597 ATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTAC-GACTTTAATGTACTCTACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *** * * * * * * *
57992661 CTCAGTGAGGTAAAATCTGTTATCTTCGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
57992726 AT
131 AT
*
57992728 CTTCAATCTATTCCACTACTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
57992792 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCCTAGGGAGACAAGATCTGA
65 CCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57992857 AAT
130 AAT
* *
57992860 CTTCAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
57992925 CATAGGGAGGTAAAAT-TCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57992989 AAT
130 AAT
* *
57992992 ATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
57993057 CACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57993121 AAT
130 AAT
* * *
57993124 TTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTAC-GACTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* ** * * * * * *
57993188 CTCAGGGAGGTAAAATCTGTCATCTTTGATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTA
66 CACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
57993253 AT
131 AT
* * *
57993255 CTTCAATCTATTCCACTACTGCCTAGGG-AGATAGAATTACTGGCTTCAACGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * *
57993319 CCACAGGGAGGTAAAATCCACCATCTTTGATCTGCCCCATTACTGCCTAGGGAGACAAGATTTGA
65 CCACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57993384 AAT
130 AAT
* *
57993387 CTTCAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
57993452 CATAGGGAGGTAAAAT-TCACCATCTTTAATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57993516 AAT
130 AAT
* *
57993519 ATTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
57993584 CACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CACAGGGAGGTAAAATCT-ACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGA
57993648 AAT
130 AAT
* * *
57993651 CTTTAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAAC
1 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * * * * * *
57993716 CACAGGGAGGAAAAATCTGCCATCTTTGATTTGCTCCACTACCGCTTAGGGAGATAAGATCTGTA
66 CACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
57993781 AT
131 AT
* *
57993783 CTTCAATCTTTTCTACTGC
1 CTTCAATCTATTCCACTGC
57993802 AACTGAGGGA
Statistics
Matches: 2277, Mismatches: 221, Indels: 54
0.89 0.09 0.02
Matches are distributed among these distances:
130 7 0.00
131 341 0.15
132 1891 0.83
133 21 0.01
134 17 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (132 bp):
CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CACAGGGAGGTAAAATCTACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
AT
Found at i:57995154 original size:23 final size:23
Alignment explanation
Indices: 57995122--57995171 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
57995112 AGCCTCTCCA
*
57995122 TTTTAC-TTTTCTATTTTTCAT-T
1 TTTTACTTTTTC-ATTTCTCATCT
57995144 TTTTCACTTTTTCATTTCTCATCT
1 TTTT-ACTTTTTCATTTCTCATCT
57995168 TTTT
1 TTTT
57995172 TTTCTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 4 0.17
23 10 0.42
24 10 0.42
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTACTTTTTCATTTCTCATCT
Found at i:58000507 original size:13 final size:13
Alignment explanation
Indices: 58000489--58000522 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
58000479 AATATGAATG
58000489 TATATAATA-TATA
1 TATATAA-ACTATA
58000502 TATATAAACTATA
1 TATATAAACTATA
58000515 TATATAAA
1 TATATAAA
58000523 TTATGGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (13 bp):
TATATAAACTATA
Found at i:58000641 original size:9 final size:10
Alignment explanation
Indices: 58000627--58000672 Score: 53
Period size: 9 Copynumber: 4.7 Consensus size: 10
58000617 ATATGTAAGT
58000627 ATAATAA-AA
1 ATAATAATAA
58000636 ATAATAATAA
1 ATAATAATAA
58000646 TAGTAATAATAA
1 -A-TAATAATAA
58000658 A-AATAA-AA
1 ATAATAATAA
58000666 ATAATAA
1 ATAATAA
58000673 CTATATTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
8 3 0.09
9 17 0.52
10 2 0.06
11 2 0.06
12 9 0.27
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (10 bp):
ATAATAATAA
Found at i:58000644 original size:6 final size:6
Alignment explanation
Indices: 58000627--58000689 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
58000617 ATATGTAAGT
* * * *
58000627 ATAATA AAAATA ATAATA ATAGTA ATAATA AAAATA AAAATA ATAACT-
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAA-TA
*
58000675 ATATTA ATAA-A ATAA
1 ATAATA ATAATA ATAA
58000690 ACTAAAAACT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
5 6 0.13
6 40 0.85
7 1 0.02
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (6 bp):
ATAATA
Found at i:58000665 original size:30 final size:30
Alignment explanation
Indices: 58000629--58000697 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
58000619 ATGTAAGTAT
58000629 AATAAAAATAATAA-TAATAGTAATAATAA-A
1 AATAAAAATAATAACT-ATAGTAATAA-AATA
*
58000659 AATAAAAATAATAACTATATTAATAAAATA
1 AATAAAAATAATAACTATAGTAATAAAATA
58000689 AACTAAAAA
1 AA-TAAAAA
58000698 CTTAAAATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
29 2 0.06
30 26 0.74
31 7 0.20
ACGTcount: A:0.70, C:0.03, G:0.01, T:0.26
Consensus pattern (30 bp):
AATAAAAATAATAACTATAGTAATAAAATA
Found at i:58005290 original size:95 final size:95
Alignment explanation
Indices: 58005180--58005362 Score: 312
Period size: 95 Copynumber: 1.9 Consensus size: 95
58005170 TTTACTTTTT
* * *
58005180 TTTTTATGTTTTGTGAATTTAAGTTTTAGTTTTTTTATTGATTAAGGGTTAATGTTTTTATTATT
1 TTTTTATGATCTGTGAATTTAAGTTTTAGTTTTTTTATTGATTAAGGGTTAATGTTTTTATTATG
58005245 ATCTTTATATTAATCTTTAATTTTAGTTTC
66 ATCTTTATATTAATCTTTAATTTTAGTTTC
* *
58005275 TTTTTATGATCTGTGAATTTAGGTTTTAGTTTTTTTATTGATTAATGGTTAATGTTTTTATTATG
1 TTTTTATGATCTGTGAATTTAAGTTTTAGTTTTTTTATTGATTAAGGGTTAATGTTTTTATTATG
*
58005340 ATCTTTATATTAATCTTTGATTT
66 ATCTTTATATTAATCTTTAATTT
58005363 AGAATTGATT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.23, C:0.03, G:0.13, T:0.61
Consensus pattern (95 bp):
TTTTTATGATCTGTGAATTTAAGTTTTAGTTTTTTTATTGATTAAGGGTTAATGTTTTTATTATG
ATCTTTATATTAATCTTTAATTTTAGTTTC
Found at i:58007001 original size:15 final size:15
Alignment explanation
Indices: 58006983--58007012 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58006973 AATTATTAAT
*
58006983 ATATGATATGATATA
1 ATATGATATAATATA
58006998 ATATGATATAATATA
1 ATATGATATAATATA
58007013 GCGTTATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATGATATAATATA
Found at i:58007184 original size:25 final size:26
Alignment explanation
Indices: 58007137--58007185 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
58007127 AATATATTAT
*
58007137 GTATTACTATTATAATATGTGATATA
1 GTATTACTATTAAAATATGTGATATA
58007163 GTATTAC-ATTAAAACTAT-TGATA
1 GTATTACTATTAAAA-TATGTGATA
58007186 CATATATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (26 bp):
GTATTACTATTAAAATATGTGATATA
Found at i:58009173 original size:4 final size:4
Alignment explanation
Indices: 58009164--58009188 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
58009154 TAATGGACAT
58009164 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
58009189 CATCAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:58009271 original size:23 final size:24
Alignment explanation
Indices: 58009243--58009293 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
58009233 TATAAAATAT
* *
58009243 AAAAATAT-ATATGTACATATAAG
1 AAAAATATAATATGTAAATAAAAG
58009266 AAAAATATAAATATGTAAATAAAAG
1 AAAAATAT-AATATGTAAATAAAAG
58009291 AAA
1 AAA
58009294 TAAAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.33
25 16 0.67
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (24 bp):
AAAAATATAATATGTAAATAAAAG
Found at i:58009302 original size:25 final size:25
Alignment explanation
Indices: 58009241--58009304 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
58009231 ATTATAAAAT
* *
58009241 ATAAAAATATATATGTACATATAAGAA
1 ATAAAAA-A-ATATGTAAATAAAAGAA
*
58009268 A-AATATAAATATGTAAATAAAAGAA
1 ATAA-AAAAATATGTAAATAAAAGAA
58009293 ATAAAAAAATAT
1 ATAAAAAAATAT
58009305 AAAAAAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
25 23 0.74
26 5 0.16
27 3 0.10
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.27
Consensus pattern (25 bp):
ATAAAAAAATATGTAAATAAAAGAA
Found at i:58009320 original size:20 final size:20
Alignment explanation
Indices: 58009298--58009334 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
58009288 AAGAAATAAA
58009298 AAAATATAAAAAA-ATATTT
1 AAAATATAAAAAATATATTT
*
58009317 AAAATGTAAAAAATATAT
1 AAAATATAAAAAATATAT
58009335 AAGTATGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (20 bp):
AAAATATAAAAAATATATTT
Done.