Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 200 of 218
Found at i:59237695 original size:38 final size:38
Alignment explanation
Indices: 59237652--59237731 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
59237642 ATTATGGATA
*
59237652 GCTAAGATTATAAGATA-CTGTTAGGGTTTAGATCTAGG
1 GCTAAGATTATAAGATATCT-TTAGGGTTTAAATCTAGG
* *
59237690 GCTAAGATTATTAGTTATCTTTAGGGTTTAAATCTAGG
1 GCTAAGATTATAAGATATCTTTAGGGTTTAAATCTAGG
59237728 GCTA
1 GCTA
59237732 TTAGAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 36 0.95
39 2 0.05
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.38
Consensus pattern (38 bp):
GCTAAGATTATAAGATATCTTTAGGGTTTAAATCTAGG
Found at i:59240328 original size:204 final size:204
Alignment explanation
Indices: 59239978--59240385 Score: 807
Period size: 204 Copynumber: 2.0 Consensus size: 204
59239968 ATGTCAAAAT
59239978 CATGATCTAGTTTAGGTAGATCTGCTGCGGAGGATTTTGTACACTTCCTAATCAAAGGCTGATGA
1 CATGATCTAGTTTAGGTAGATCTGCTGCGGAGGATTTTGTACACTTCCTAATCAAAGGCTGATGA
59240043 CATGGGAGGTTTAATATGGAACATGTCAAATTATTTACTGGATGATATTATCTAAAATTGGCATT
66 CATGGGAGGTTTAATATGGAACATGTCAAATTATTTACTGGATGATATTATCTAAAATTGGCATT
59240108 CAAAGGATTATTTCCATATTTTCATGATTTCATGCATCATGGTACTGCATAGCAGTGATAATGCT
131 CAAAGGATTATTTCCATATTTTCATGATTTCATGCATCATGGTACTGCATAGCAGTGATAATGCT
59240173 GTTATTAGA
196 GTTATTAGA
59240182 CATGATCTAGTTTAGGTAGATCTGCTGCGGAGGATTTTGTACACTTCCTAATCAAAGGCTGATGA
1 CATGATCTAGTTTAGGTAGATCTGCTGCGGAGGATTTTGTACACTTCCTAATCAAAGGCTGATGA
59240247 CATGGGAGGTTTAATATGGAACATGTCAAATTATTTACTGGATGATATTATCTAAAATTGGCATT
66 CATGGGAGGTTTAATATGGAACATGTCAAATTATTTACTGGATGATATTATCTAAAATTGGCATT
*
59240312 CAAAGGATTATTTCCATATTTTCATGATTTCATGCATCATGGTACTGCATAGCGGTGATAATGCT
131 CAAAGGATTATTTCCATATTTTCATGATTTCATGCATCATGGTACTGCATAGCAGTGATAATGCT
59240377 GTTATTAGA
196 GTTATTAGA
59240386 TGCCATTATA
Statistics
Matches: 203, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 203 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (204 bp):
CATGATCTAGTTTAGGTAGATCTGCTGCGGAGGATTTTGTACACTTCCTAATCAAAGGCTGATGA
CATGGGAGGTTTAATATGGAACATGTCAAATTATTTACTGGATGATATTATCTAAAATTGGCATT
CAAAGGATTATTTCCATATTTTCATGATTTCATGCATCATGGTACTGCATAGCAGTGATAATGCT
GTTATTAGA
Found at i:59249801 original size:20 final size:20
Alignment explanation
Indices: 59249772--59249814 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
59249762 AGTTCAAGGT
*
59249772 TTCGAGTTTTGAGTTTAGGG
1 TTCGAATTTTGAGTTTAGGG
*
59249792 TTCGAATTTTGAGTTTGGGG
1 TTCGAATTTTGAGTTTAGGG
59249812 TTC
1 TTC
59249815 TGAGTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.07, G:0.33, T:0.47
Consensus pattern (20 bp):
TTCGAATTTTGAGTTTAGGG
Found at i:59251317 original size:39 final size:40
Alignment explanation
Indices: 59251263--59251342 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 40
59251253 AATAAACACC
*
59251263 AAAAAATTATTTAAAAATAAAAAAA-TAAAAAAAGTATTT
1 AAAAAATTATTTAAAAATAAAAAAATTAAAAAAAATATTT
*
59251302 AAAAAA-TATTTTAAAATTAAAAAAATTAAAAAAAATATTT
1 AAAAAATTA-TTTAAAAATAAAAAAATTAAAAAAAATATTT
59251342 A
1 A
59251343 TTATATATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.05
39 21 0.57
40 14 0.38
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (40 bp):
AAAAAATTATTTAAAAATAAAAAAATTAAAAAAAATATTT
Found at i:59262062 original size:87 final size:87
Alignment explanation
Indices: 59261949--59262116 Score: 266
Period size: 87 Copynumber: 1.9 Consensus size: 87
59261939 TTCCTCTTTT
* *
59261949 TTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTCTT
1 TTTTTTTT-CACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAATTCTT
59262014 CAAAAAAAGCAATTAAGCCCCTGC
65 C-AAAAAAGCAATTAAGCCCCTGC
* * *
59262038 TTTTTTTT-ACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAATTTTTC
1 TTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAATTCTTC
59262102 AAAAAAGCAATTAAG
66 AAAAAAGCAATTAAG
59262117 TCCATGTTCT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
86 15 0.20
87 51 0.69
89 8 0.11
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (87 bp):
TTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAATTCTTC
AAAAAAGCAATTAAGCCCCTGC
Found at i:59262186 original size:19 final size:19
Alignment explanation
Indices: 59262152--59262201 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
59262142 AAAAAATATA
*
59262152 AATAATAAATAATAAATTTT
1 AATAA-AAATATTAAATTTT
59262172 AGA-AAAAATATTAAATTTT
1 A-ATAAAAATATTAAATTTT
59262191 AATAAAAATAT
1 AATAAAAATAT
59262202 AAAAAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.04
19 22 0.81
20 3 0.11
21 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
AATAAAAATATTAAATTTT
Found at i:59262526 original size:11 final size:10
Alignment explanation
Indices: 59262510--59262555 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
59262500 ATTTTACAAT
59262510 TTTTTATATA
1 TTTTTATATA
*
59262520 CTTTTTA-CTA
1 -TTTTTATATA
59262530 TTTTTATATA
1 TTTTTATATA
59262540 TATTTTATAT-
1 T-TTTTATATA
59262550 TTTTTA
1 TTTTTA
59262556 ATAAATTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 11 0.35
10 6 0.19
11 14 0.45
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTATATA
Found at i:59262527 original size:21 final size:21
Alignment explanation
Indices: 59262501--59262545 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
59262491 CTTTATAAAA
59262501 TTTTACAATTTTT-TATATACT
1 TTTTACAATTTTTATATATA-T
*
59262522 TTTTACTATTTTTATATATAT
1 TTTTACAATTTTTATATATAT
59262543 TTT
1 TTT
59262546 ATATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTACAATTTTTATATATAT
Found at i:59262554 original size:9 final size:9
Alignment explanation
Indices: 59262508--59262555 Score: 51
Period size: 9 Copynumber: 4.9 Consensus size: 9
59262498 AAATTTTACA
59262508 ATTTTTTAT
1 ATTTTTTAT
59262517 ATACTTTTTACT
1 AT--TTTTTA-T
59262529 ATTTTTATAT
1 ATTTTT-TAT
*
59262539 ATATTTTAT
1 ATTTTTTAT
59262548 ATTTTTTA
1 ATTTTTTA
59262556 ATAAATTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 12 0.36
10 10 0.30
11 8 0.24
12 3 0.09
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:59262570 original size:21 final size:20
Alignment explanation
Indices: 59262492--59262572 Score: 69
Period size: 20 Copynumber: 4.0 Consensus size: 20
59262482 TTCTTATGAC
*
59262492 TTTATA-AAATTTTACAATTT
1 TTTATATAAATTTTA-TATTT
**
59262512 TTTATATACTTTTTACTA-TT
1 TTTATATAAATTTTA-TATTT
*
59262532 TTTATATATATTTTATATTT
1 TTTATATAAATTTTATATTT
59262552 TTTA-ATAAATTGTTAATATTT
1 TTTATATAAATT-TT-ATATTT
59262573 GAATTTTTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
19 8 0.16
20 29 0.57
21 14 0.27
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (20 bp):
TTTATATAAATTTTATATTT
Found at i:59262801 original size:91 final size:90
Alignment explanation
Indices: 59262642--59262862 Score: 293
Period size: 91 Copynumber: 2.4 Consensus size: 90
59262632 AATTTTTAAT
* * *
59262642 AAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAGTTTG-GGGTCTTTTTGATGCATTTTGAAAGTT
1 AAAACCAGGGGCTTAATTGCTTTTTTTGAAAAGTTTGAGAGCCTTTTTGATGCATTTTGAAAGTT
* * *
59262706 CAAATACTCAATTGAGTG-AAAAAA
66 CAAATACCCAAATAAGTGCAAAAAA
* ** *
59262730 AGAGAGTAGGGGATTAATTGCTTTTTTTGAAAATGTTTGAGAGCCTTTTTGATGCATTTTGAAAG
1 A-AAACCAGGGGCTTAATTGCTTTTTTTGAAAA-GTTTGAGAGCCTTTTTGATGCATTTTGAAAG
59262795 TTCAAATACCCAAATAAGTGCCAAAAAA
64 TTCAAATACCCAAATAAGTG-CAAAAAA
*
59262823 AAAACCAGAGGCTTAATTGCTTTTTTTGAAAAAGTTTGAG
1 AAAACCAGGGGCTTAATTGCTTTTTTTG-AAAAGTTTGAG
59262863 GAATTATTGC
Statistics
Matches: 114, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
88 1 0.01
89 28 0.25
90 5 0.04
91 40 0.35
92 29 0.25
93 11 0.10
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (90 bp):
AAAACCAGGGGCTTAATTGCTTTTTTTGAAAAGTTTGAGAGCCTTTTTGATGCATTTTGAAAGTT
CAAATACCCAAATAAGTGCAAAAAA
Found at i:59268441 original size:29 final size:29
Alignment explanation
Indices: 59268402--59268457 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
59268392 TTTTTAAAAT
* **
59268402 AAAATATTAAAAATTTATTTTAAAAATTA
1 AAAAAATTAAAAAAGTATTTTAAAAATTA
*
59268431 AAAAAATTAAAAAAGTATTTTTAAAAT
1 AAAAAATTAAAAAAGTATTTTAAAAAT
59268458 ATTTTTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAAAATTAAAAAAGTATTTTAAAAATTA
Found at i:59268463 original size:12 final size:12
Alignment explanation
Indices: 59268440--59268474 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
59268430 AAAAAAATTA
59268440 AAAAAGTATTTTT
1 AAAAA-TATTTTT
59268453 -AAAATATTTTT
1 AAAAATATTTTT
59268464 AAAAATATTTT
1 AAAAATATTTT
59268475 AAATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
AAAAATATTTTT
Found at i:59268483 original size:17 final size:17
Alignment explanation
Indices: 59268461--59268537 Score: 53
Period size: 17 Copynumber: 5.0 Consensus size: 17
59268451 TTAAAATATT
59268461 TTTAAAAATATTTTAAA
1 TTTAAAAATATTTTAAA
59268478 TTT-AAAAT-TTTT---
1 TTTAAAAATATTTTAAA
** *
59268490 TTTAAAAA-A-AGT-AT
1 TTTAAAAATATTTTAAA
59268504 TTTAAAAATATTTTAAA
1 TTTAAAAATATTTTAAA
* *
59268521 ATTAAAAAAATTTTAAA
1 TTTAAAAATATTTTAAA
59268538 AAATAAATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
12 4 0.09
13 4 0.09
14 8 0.17
15 5 0.11
16 6 0.13
17 19 0.41
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (17 bp):
TTTAAAAATATTTTAAA
Found at i:59268539 original size:18 final size:17
Alignment explanation
Indices: 59268505--59268538 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
59268495 AAAAAGTATT
*
59268505 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTTAAAA
59268522 TTAAAAAAATTTTAAAA
1 TTAAAAAAATTTTAAAA
59268539 AATAAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAAAATTTTAAAA
Found at i:59268544 original size:18 final size:17
Alignment explanation
Indices: 59268506--59268544 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
59268496 AAAAGTATTT
* *
59268506 TAAAAATATTTTAAAAT
1 TAAAAAAATTTTAAAAA
59268523 TAAAAAAATTTTAAAAAA
1 TAAAAAAATTTT-AAAAA
59268541 TAAA
1 TAAA
59268545 TATATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAAAAATTTTAAAAA
Found at i:59268551 original size:18 final size:17
Alignment explanation
Indices: 59268506--59268551 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
59268496 AAAAGTATTT
*
59268506 TAAAAATATTTTAAAAT
1 TAAAAATATTTTAAAAA
*
59268523 TAAAAAAATTTTAAAAAA
1 TAAAAATATTTT-AAAAA
*
59268541 TAAATATATTT
1 TAAAAATATTT
59268552 ATTATATTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAAATATTTTAAAAA
Found at i:59272329 original size:7 final size:8
Alignment explanation
Indices: 59272310--59272337 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
59272300 ACATTCAAAA
59272310 AAAAAATC
1 AAAAAATC
59272318 AAAAAATC
1 AAAAAATC
59272326 AAAAAATC
1 AAAAAATC
59272334 AAAA
1 AAAA
59272338 GGTGATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATC
Found at i:59282662 original size:12 final size:12
Alignment explanation
Indices: 59282645--59282673 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
59282635 TATGAATTAC
59282645 AAAAAAAAAATT
1 AAAAAAAAAATT
59282657 AAAAAAAAAATT
1 AAAAAAAAAATT
59282669 AAAAA
1 AAAAA
59282674 CTAGAGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAAAAAATT
Found at i:59283276 original size:19 final size:20
Alignment explanation
Indices: 59283253--59283311 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 20
59283243 AAAATTACAA
*
59283253 AAAAAAATCAAAATGATTT-T
1 AAAAAATTCAAAAT-ATTTAT
59283273 AAAAAATTCAAAATATTTAT
1 AAAAAATTCAAAATATTTAT
*
59283293 -AAAAATTCTAAA-ATTTAT
1 AAAAAATTCAAAATATTTAT
59283311 A
1 A
59283312 TTTTTTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 6 0.17
19 15 0.43
20 14 0.40
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAAAATTCAAAATATTTAT
Found at i:59283276 original size:20 final size:20
Alignment explanation
Indices: 59283253--59283297 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
59283243 AAAATTACAA
59283253 AAAAAAATCAAAATGATTT-T
1 AAAAAAATCAAAAT-ATTTAT
*
59283273 AAAAAATTCAAAATATTTAT
1 AAAAAAATCAAAATATTTAT
59283293 AAAAA
1 AAAAA
59283298 TTCTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAAAATCAAAATATTTAT
Found at i:59287745 original size:32 final size:32
Alignment explanation
Indices: 59287703--59287769 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
59287693 CATGGATCCA
* *
59287703 TGCACCCAGAGTCAGTGGGTTATTGTTGGTAG
1 TGCACACAGAGTCAGTGGGATATTGTTGGTAG
59287735 TGCACACAGAGTCAGTGGGATATTGTTGGTAG
1 TGCACACAGAGTCAGTGGGATATTGTTGGTAG
59287767 TGC
1 TGC
59287770 TGTCTATGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.15, G:0.34, T:0.30
Consensus pattern (32 bp):
TGCACACAGAGTCAGTGGGATATTGTTGGTAG
Found at i:59293500 original size:24 final size:24
Alignment explanation
Indices: 59293457--59293503 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
59293447 GGTGCTTCCC
* *
59293457 GTTAATTGCTCTTCGGAGCTACCT
1 GTTAATTGCTATTCGAAGCTACCT
*
59293481 GTTAATTGCTATTTGAAGCTACC
1 GTTAATTGCTATTCGAAGCTACC
59293504 CATTATAGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (24 bp):
GTTAATTGCTATTCGAAGCTACCT
Found at i:59295850 original size:26 final size:26
Alignment explanation
Indices: 59295815--59295866 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
59295805 AATGTGAAAG
*
59295815 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59295841 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59295867 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:59295991 original size:104 final size:103
Alignment explanation
Indices: 59295737--59296103 Score: 623
Period size: 103 Copynumber: 3.6 Consensus size: 103
59295727 TGTATATAAA
** * * *
59295737 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
59295801 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
59295840 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
59295905 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
59295944 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
59296009 TGAAA--TAAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
59296045 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
59296104 ATAACGGTTA
Statistics
Matches: 254, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
101 62 0.24
102 25 0.10
103 91 0.36
104 76 0.30
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:59296055 original size:26 final size:26
Alignment explanation
Indices: 59296020--59296071 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
59296010 GAAATAAAAG
*
59296020 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59296046 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59296072 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:59303435 original size:26 final size:26
Alignment explanation
Indices: 59303400--59303451 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
59303390 AATGTGAAAG
*
59303400 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59303426 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59303452 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:59303565 original size:105 final size:105
Alignment explanation
Indices: 59303322--59303690 Score: 624
Period size: 102 Copynumber: 3.6 Consensus size: 105
59303312 TGTATATAAA
** * * *
59303322 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
59303386 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
59303425 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
59303490 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
59303530 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
59303595 TGAAA--T-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
59303632 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
59303691 ATAACGGTTA
Statistics
Matches: 256, Mismatches: 7, Indels: 7
0.95 0.03 0.03
Matches are distributed among these distances:
102 88 0.34
103 68 0.27
104 25 0.10
105 75 0.29
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:59305558 original size:44 final size:42
Alignment explanation
Indices: 59305495--59305643 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 42
59305485 AATGTGACAT
** * *
59305495 CGTGTAAGACCACATCTGGGACATTGGCATCG-ATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGACATCGTATAT--GA-TTA
*
59305539 CGTGTAAGACCATGTCTGGGACATTGACGTCGTATATGATTA
1 CGTGTAAGACCATGTCTGGGACATTGACATCGTATATGATTA
* * * * * *
59305581 CGTGTAAGACCCTGTCTGCGACAGTGCCATTGTTATTTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGACATCG-TATATGATTA
* *
59305624 CATGTAAGACCACGTCTGGG
1 CGTGTAAGACCATGTCTGGG
59305644 GCGTTGGCAT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
42 29 0.33
43 27 0.31
44 28 0.32
45 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGACATCGTATATGATTA
Found at i:59308207 original size:19 final size:19
Alignment explanation
Indices: 59308183--59308295 Score: 154
Period size: 19 Copynumber: 5.8 Consensus size: 19
59308173 AATCATATAT
59308183 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
59308202 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
59308221 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59308240 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
** *
59308261 TCTTGGATTACATATCATA
1 TCTAAGATTGCATATCATA
59308280 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
59308296 CTCAAAAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 64 0.80
21 16 0.20
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59308270 original size:59 final size:56
Alignment explanation
Indices: 59308176--59308295 Score: 170
Period size: 59 Copynumber: 2.1 Consensus size: 56
59308166 ATTACAAAAT
* *
59308176 CATAT-ATTCTAAGATTGCATATCATATCTAAGATTATATATCATCTCTAAGATTG
1 CATATCATTCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTG
**
59308231 CATATCATATCTAAGATTGCATATATCATATCTTGGATTACATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTGC--ATATCATATCTAAGATTACATATCATATCTAAGATTG
59308290 CATATC
1 CATATC
59308296 CTCAAAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.04
57 11 0.19
59 39 0.68
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (56 bp):
CATATCATTCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:59308275 original size:40 final size:40
Alignment explanation
Indices: 59308183--59308294 Score: 174
Period size: 40 Copynumber: 2.9 Consensus size: 40
59308173 AATCATATAT
*
59308183 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
59308221 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
** *
59308261 TCTTGGATTACATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
59308295 CCTCAAAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.41
40 40 0.59
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:59308622 original size:44 final size:43
Alignment explanation
Indices: 59308509--59309356 Score: 371
Period size: 44 Copynumber: 19.6 Consensus size: 43
59308499 CTTCAATCTA
59308509 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATCTT-AGTCTG
* *
59308554 C-CTCACTGCAACTCCA-GGAGGATAAGACTTGCTTCCTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCAT-CTTAGTCTG
* ** *
59308598 CTCCACTGCAACTTTAGGGAGATAAGACAAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCAT-CTTAGTCTG
* * * * *
59308639 CT-CTCTGCAACTTCAGAGAGATAAGATCTGTG-ATTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCATCTTAGTCTG
* * ** *
59308682 CTCTACTGCAACTTCAGGGAGATAGGTTTATCGGC-T-TTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACT-T--GCATCTTAGTCTG
* *
59308726 CTCCACTGCTACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATCTT-AGTCTG
* *
59308771 C-CTCACTGTAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCAT-CTTAGTC-TG
* * * * *
59308816 -TCCACCGCAACTTCAAGGAGATAAGACTAG-ATGC-GA-TCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCAT-CTTAGTCTG
* * * * * * *
59308856 CT-CTCTGTAACTTCAGAGAGATAAGA-TCTGTAATTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGACT-TG-CATCTTAGTCTG
* * ** *
59308899 CTCCACTGCAACTTTAGGGAGATAGGA-TTGTCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATC-TTAGTCTG
* * * * *
59308943 TTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATCTT-AGTCTG
* * * *
59308988 C-CTCACTGTAACTTCA-AGAGGATAATACTTGCTTACTTAGTCTTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCAT-CTTAGTC-TG
* * * *
59309033 -TCCACCGCAACTTCAGGGAGATAAGGCTAG-ATGC-GA-TCT-
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCAT-CTTAGTCTG
* * * * * * * * *
59309072 ATTCTCTGTAACTTCAGAGAGATAAGA-TCTGTAATTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGACT-TG-CATCTTAGTCTG
* ** *
59309116 CTCCACTGCAACTTCAGGGAGATAGGA-TTGTCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATC-TTAGTCTG
* * *
59309160 CTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-CATCTT-AGTCTG
* * * *
59309205 C-CTCACTGTAACTTTA-GAAGGATAAGACTTGCTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCAT-CTTAGTCTG
* * * *
59309249 CTCCAGTGCAACTTTAGGGAGATAAGACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCAT-CTTAGTCTG
* * * *
59309290 CT-CTCTGCAACTTCAGAGG-GATAAGATCTGTG-ATTTTAATCCG
1 CTCCACTGCAACTTCAG-GGAGATAAGA-CT-TGCATCTTAGTCTG
59309333 CTCCACTGCAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
59309357 GGATTGTCGA
Statistics
Matches: 605, Mismatches: 137, Indels: 123
0.70 0.16 0.14
Matches are distributed among these distances:
39 2 0.00
40 82 0.14
41 23 0.04
42 19 0.03
43 36 0.06
44 301 0.50
45 142 0.23
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTAGTCTG
Found at i:59308842 original size:217 final size:217
Alignment explanation
Indices: 59308498--59309378 Score: 1388
Period size: 217 Copynumber: 4.1 Consensus size: 217
59308488 AGGAATTAGT
* * * * * *
59308498 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGC
1 GCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * * * *
59308563 AACTCCAGGAGGATAAGACTTGCTTCCTTAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACAA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
59308628 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAA
131 GATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
* *
59308693 CTTCAGGGAGATAGGTTTATCG
196 CTTCAGGGAGATAGGATTGTCG
* * *
59308715 GCTTTAATCTGCTCCACTGCTACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
*
59308780 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAAGGAGATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
*
59308844 AGATGCGATCTACTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
130 AGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
*
59308909 ACTTTAGGGAGATAGGATTGTCG
195 ACTTCAGGGAGATAGGATTGTCG
* *
59308932 GCTTTAATCTGTTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTACCTCACTGT
1 GCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * *
59308997 AACTTCAAGAGGATAATACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGGCT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
* *
59309061 AGATGCGATCTATTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
130 AGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
59309126 ACTTCAGGGAGATAGGATTGTCG
195 ACTTCAGGGAGATAGGATTGTCG
59309149 GCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * ** *
59309214 AACTTTAGAAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGCAACTTTAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
59309279 GATGCGATCTGCTCTCTGCAACTTCAGAGGGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
131 GATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
59309344 CTTCAGGGAGATAGGATTGTCG
196 CTTCAGGGAGATAGGATTGTCG
*
59309366 ACTTTAATCTGCT
1 GCTTTAATCTGCT
59309379 TCCCACTATT
Statistics
Matches: 617, Mismatches: 45, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
216 2 0.00
217 613 0.99
218 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
GCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
GATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGTCG
Found at i:59309526 original size:132 final size:132
Alignment explanation
Indices: 59309371--59309987 Score: 995
Period size: 132 Copynumber: 4.7 Consensus size: 132
59309361 TGTCGACTTT
* * *
59309371 AATCTGCTTCCCACTATTTTGGAAAGATATGATTTGTCGTCTTCGATCTACTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
59309436 GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCT
59309501 TA
131 TA
*
59309503 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
* *
59309568 GGGAGATAAGATCTACAATTTTCAACATCCTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCT
59309633 TA
131 TA
* * *
59309635 AATCTACTTCCCACTATCTTGGAAATATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
* *
59309700 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCT
59309765 TA
131 TA
**
59309767 AATCTGCTTCCCACTATCTTGGAAAGATAAGA-TTCACTGTCTTCGATCTGCTCCACTACTGCTT
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC-GTCTTCGATCTGCTCCACTACTGCTT
* *
59309831 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTG-TTCAGGGAGACAAGGCTTGGTGG
65 AGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTT-AGGGAGACAAGGCTTGGTGG
59309895 CTTA
129 CTTA
* * * *
59309899 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGTTCCACTACTGTTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
*
59309964 GGGAGATAAGATCTATAATTTTCA
66 GGGAGATAAGATCTACAATTTTCA
59309988 CTGATCTGTT
Statistics
Matches: 450, Mismatches: 32, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
131 3 0.01
132 445 0.99
133 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCT
TA
Found at i:59309575 original size:44 final size:44
Alignment explanation
Indices: 59309395--59309711 Score: 125
Period size: 44 Copynumber: 7.2 Consensus size: 44
59309385 TATTTTGGAA
* * *
59309395 AGATATGATTTGTCGTCTTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCATCTTCAATCTACTCCACTACTGCTTAGGG
* * * * *
59309439 AGATAAGATCT-ACAATCTTCAACCTACTCCGCTGCTGCTTAGGG
1 AGATAAGATTTGTC-ATCTTCAATCTACTCCACTACTGCTTAGGG
* * * * ** * * *
59309483 AAACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCATCTTCAATCTAC-T-CCACTACTGCTTAGG-G
* *
59309527 AGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCATCTTCAATCTACTCCACTACTGCTTAGGG
* * * * * *
59309571 AGATAAGATCT-ACAATTTTCAA-CATCCTCCGCTGCTGCTTAGGG
1 AGATAAGATTTGTC-ATCTTCAATC-TACTCCACTACTGCTTAGGG
* * * ** * *
59309615 AGACAAGGCTTGGT-GGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCATCTTCAATCTAC-T-CCACTACTGCTTAGG-G
* * * * *
59309659 ATATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCATCTTCAATCTACTCCACTACTGCTTAGGG
59309703 AGATAAGAT
1 AGATAAGAT
59309712 CTACAATTTT
Statistics
Matches: 190, Mismatches: 61, Indels: 44
0.64 0.21 0.15
Matches are distributed among these distances:
42 12 0.06
43 21 0.11
44 136 0.72
45 13 0.07
46 8 0.04
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGTCATCTTCAATCTACTCCACTACTGCTTAGGG
Found at i:59309839 original size:44 final size:44
Alignment explanation
Indices: 59309673--59309975 Score: 126
Period size: 44 Copynumber: 6.9 Consensus size: 44
59309663 AAGATTCGTC
* *
59309673 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACT
* * * * * * * **
59309719 -T-TTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAAGCTT-GGT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGA-TAAGATTCACT
* * *
59309761 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTCACT
1 GTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTCACT
* *
59309805 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTACA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-ACT
* * * * * * **
59309849 ATCTTCAACCTTCTCCACTGCTG-TTCAGGGAGACAAGGCTT-GGT
1 GTCTTCAATCTGCTCCACTACTGCTT-AGGGAGATAA-GATTCACT
* * * * *
59309893 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTCGCC
1 GTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTCACT
* * *
59309937 GTCTTCGATCTGTTCCACTACTGTTTAGGGAGATAAGAT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
59309976 CTATAATTTT
Statistics
Matches: 181, Mismatches: 54, Indels: 46
0.64 0.19 0.16
Matches are distributed among these distances:
42 13 0.07
43 20 0.11
44 122 0.67
45 16 0.09
46 10 0.06
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACT
Found at i:59311221 original size:20 final size:18
Alignment explanation
Indices: 59311193--59311247 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
59311183 TGGCCTCTCA
*
59311193 TTTTACTTTTTATTTTTCTT
1 TTTTCCTTTTT-TTTTTC-T
*
59311213 TTTTCCTTTTTCCTTTTCT
1 TTTTCCTTTTT-TTTTTCT
59311232 TTTTCCTCTTTTTTTT
1 TTTTCCT-TTTTTTTT
59311248 GAAATATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 11 0.37
20 19 0.63
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTCCTTTTTTTTTTCT
Found at i:59316177 original size:98 final size:98
Alignment explanation
Indices: 59315998--59316194 Score: 324
Period size: 98 Copynumber: 2.0 Consensus size: 98
59315988 GTACAATAAA
* *
59315998 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATATGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
59316063 CCTCTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCTCAAACTCAGAATATTTCCTTT
*
59316096 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
59316161 CCTTTAAAAT-TCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCT-CAAACTCAGAATATTTCCTTT
59316194 A
1 A
59316195 TTATTTTTAA
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
97 1 0.01
98 91 0.99
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCTCAAACTCAGAATATTTCCTTT
Found at i:59316868 original size:23 final size:22
Alignment explanation
Indices: 59316827--59316870 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
59316817 ATATATATAT
59316827 GAAAATATTCATTTAAAAAAAA
1 GAAAATATTCATTTAAAAAAAA
* *
59316849 GAAAATATTCGTTTTAAAAAAA
1 GAAAATATTCATTTAAAAAAAA
59316871 TATATATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (22 bp):
GAAAATATTCATTTAAAAAAAA
Found at i:59317519 original size:19 final size:19
Alignment explanation
Indices: 59317495--59317607 Score: 154
Period size: 19 Copynumber: 5.8 Consensus size: 19
59317485 AATCATATAT
59317495 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
59317514 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
59317533 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59317552 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
* **
59317573 TTTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59317592 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
59317608 CTCAAAAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 64 0.80
21 16 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59317582 original size:40 final size:40
Alignment explanation
Indices: 59317495--59317606 Score: 174
Period size: 40 Copynumber: 2.9 Consensus size: 40
59317485 AATCATATAT
*
59317495 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
59317533 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
* **
59317573 TTTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
59317607 CCTCAAAAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.41
40 40 0.59
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:59319366 original size:16 final size:16
Alignment explanation
Indices: 59319329--59319368 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
59319319 TAAATAAAAT
* *
59319329 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
59319345 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
59319361 TAAAATTA
1 TAAAATTA
59319369 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:59319447 original size:59 final size:59
Alignment explanation
Indices: 59319379--59319557 Score: 241
Period size: 59 Copynumber: 2.9 Consensus size: 59
59319369 TCAAATTATT
*
59319379 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
* *
59319438 AATTATTAATTGTATTAATTGTTGTAATAAAATTTAACACTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
59319497 AATTATTCATTGTATTAACTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAA
1 AATTATT-A----A-T---TGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAA
59319558 ATAAACTTGA
Statistics
Matches: 105, Mismatches: 6, Indels: 9
0.88 0.05 0.08
Matches are distributed among these distances:
59 63 0.60
60 1 0.01
64 1 0.01
65 1 0.01
68 39 0.37
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:59319662 original size:22 final size:23
Alignment explanation
Indices: 59319624--59319667 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
59319614 AAATAAACTT
59319624 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAAC-ATTATATTTTA
59319648 AAAATAAAAAA-ATTATATTT
1 AAAATAAAAAACATTATATTT
59319668 AATATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
24 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAATAAAAAACATTATATTTTA
Found at i:59320942 original size:14 final size:14
Alignment explanation
Indices: 59320920--59320953 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
59320910 ACCTATTTTT
*
59320920 TAAAATAAAAAGAG
1 TAAATTAAAAAGAG
59320934 TAAATTAAAAAGAG
1 TAAATTAAAAAGAG
*
59320948 CAAATT
1 TAAATT
59320954 GCAATATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (14 bp):
TAAATTAAAAAGAG
Found at i:59331260 original size:23 final size:23
Alignment explanation
Indices: 59331230--59331275 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
59331220 CATTATAAGG
59331230 TAAAATTTC-AAAAAAAAATTAA
1 TAAAATTTCTAAAAAAAAATTAA
**
59331252 TAAATATTTCTTTAAAAAAATTAA
1 TAAA-ATTTCTAAAAAAAAATTAA
59331276 ATATTCAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 5 0.25
24 11 0.55
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAAATTTCTAAAAAAAAATTAA
Found at i:59346545 original size:10 final size:10
Alignment explanation
Indices: 59346530--59346559 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
59346520 TTAACTTTCT
59346530 TAAAAATTTA
1 TAAAAATTTA
59346540 TAAAAATTTA
1 TAAAAATTTA
59346550 TAAAAATTTA
1 TAAAAATTTA
59346560 AATTAGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TAAAAATTTA
Found at i:59347555 original size:19 final size:19
Alignment explanation
Indices: 59347516--59347554 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
59347506 AAAAAGTTAA
59347516 TTAATTATTTTAATGACTT
1 TTAATTATTTTAATGACTT
59347535 TTAATTA-TTTAATGACTT
1 TTAATTATTTTAATGACTT
59347553 TT
1 TT
59347555 TTGCTTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TTAATTATTTTAATGACTT
Found at i:59354142 original size:20 final size:22
Alignment explanation
Indices: 59354104--59354149 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
59354094 AAAATAGTAG
*
59354104 AAAGAAGAACCCAAGAAAGAGA
1 AAAGAAGAACCCAAGAAAGAAA
59354126 AAAGAA-AACCC-AGAAAGAAA
1 AAAGAAGAACCCAAGAAAGAAA
59354146 AAAG
1 AAAG
59354150 GGGAAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.52
21 5 0.22
22 6 0.26
ACGTcount: A:0.67, C:0.13, G:0.20, T:0.00
Consensus pattern (22 bp):
AAAGAAGAACCCAAGAAAGAAA
Found at i:59357443 original size:67 final size:67
Alignment explanation
Indices: 59357363--59357497 Score: 243
Period size: 67 Copynumber: 2.0 Consensus size: 67
59357353 TTTGGCATAT
*
59357363 TCCCTGAAGCGAATATTGCATATAATTGTTTAGAAATTATATTTATTTTGTTGACTTAGTGACAT
1 TCCCTAAAGCGAATATTGCATATAATTGTTTAGAAATTATATTTATTTTGTTGACTTAGTGACAT
59357428 TA
66 TA
* *
59357430 TCCCTAAAGCGAATATTGCATATAATTGTTTGGAAATTATATTTATTTTTTTGACTTAGTGACAT
1 TCCCTAAAGCGAATATTGCATATAATTGTTTAGAAATTATATTTATTTTGTTGACTTAGTGACAT
59357495 TA
66 TA
59357497 T
1 T
59357498 AATATTCACA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.44
Consensus pattern (67 bp):
TCCCTAAAGCGAATATTGCATATAATTGTTTAGAAATTATATTTATTTTGTTGACTTAGTGACAT
TA
Found at i:59362610 original size:31 final size:29
Alignment explanation
Indices: 59362575--59362651 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
59362565 TTAATAGCTC
**
59362575 AGTGACTAAAATGTTGCAATACGACAACATA
1 AGTGACTAAAATGTAACAATAC-A-AACATA
* * * *
59362606 AGTGACAAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAATACAAACATA
59362635 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
59362652 TTAAAGTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 21 0.55
30 1 0.03
31 16 0.42
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.22
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAATACAAACATA
Found at i:59363070 original size:28 final size:28
Alignment explanation
Indices: 59363030--59363086 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
59363020 TTAACATTAA
59363030 TATAATAATTTAAGATAAGATTGGATCG
1 TATAATAATTTAAGATAAGATTGGATCG
59363058 TATAATAATTTAAGATAAGATTGGATCG
1 TATAATAATTTAAGATAAGATTGGATCG
59363086 T
1 T
59363087 CGTCTTAGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.37
Consensus pattern (28 bp):
TATAATAATTTAAGATAAGATTGGATCG
Found at i:59363437 original size:22 final size:22
Alignment explanation
Indices: 59363401--59363451 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
59363391 AATCGATCCG
59363401 ATATCTCTATTATATTAATATGAA
1 ATAT-TCTATTATATTAATAT-AA
*
59363425 ATATTCTA-TATATTAATATAT
1 ATATTCTATTATATTAATATAA
59363446 ATATTC
1 ATATTC
59363452 AATGTTTGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 7 0.27
22 11 0.42
23 4 0.15
24 4 0.15
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (22 bp):
ATATTCTATTATATTAATATAA
Found at i:59364387 original size:16 final size:17
Alignment explanation
Indices: 59364362--59364403 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
59364352 GTAATTTTCT
59364362 TTCT-ATTTTTCAT-CC
1 TTCTAATTTTTCATCCC
*
59364377 TTCTAATTTTTTATCCC
1 TTCTAATTTTTCATCCC
*
59364394 TTCAAATTTT
1 TTCTAATTTT
59364404 CGTCCTTCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 11 0.48
ACGTcount: A:0.19, C:0.21, G:0.00, T:0.60
Consensus pattern (17 bp):
TTCTAATTTTTCATCCC
Found at i:59367705 original size:19 final size:19
Alignment explanation
Indices: 59367668--59367706 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
59367658 ATTGATTTTT
59367668 TAAATTTTGAATTAAAATGA
1 TAAATTTTGAA-TAAAATGA
59367688 TAAATTTTGTAA-AAAATGA
1 TAAATTTTG-AATAAAATGA
59367707 GGGCTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 9 0.50
21 2 0.11
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TAAATTTTGAATAAAATGA
Found at i:59372638 original size:18 final size:17
Alignment explanation
Indices: 59372594--59372645 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
59372584 ATCATTATTA
*
59372594 AAAATCATT-AAAAATAT
1 AAAAT-ATTCAAAAAAAT
*
59372611 ATAATATTCAAAAAAAT
1 AAAATATTCAAAAAAAT
59372628 AAAATATTTCAAAGAAAA
1 AAAATA-TTCAAA-AAAA
59372646 ATATAAGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 3 0.10
17 16 0.55
18 6 0.21
19 4 0.14
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (17 bp):
AAAATATTCAAAAAAAT
Found at i:59374053 original size:28 final size:29
Alignment explanation
Indices: 59373988--59374053 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
59373978 AATGTTTAGG
59373988 TTAT-ATTATATCAAACAATAATTATTTA
1 TTATAATTATATCAAACAATAATTATTTA
* * *
59374016 TTA-ATTTTATATCAAATAA-AATTATTTT
1 TTATA-ATTATATCAAACAATAATTATTTA
59374044 TTATAATTAT
1 TTATAATTAT
59374054 TGAACTCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (29 bp):
TTATAATTATATCAAACAATAATTATTTA
Found at i:59381481 original size:1 final size:1
Alignment explanation
Indices: 59381475--59381504 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
59381465 CATATAACAG
59381475 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
59381505 CTTCCCAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:59383099 original size:39 final size:39
Alignment explanation
Indices: 59383045--59383122 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
59383035 ATAAGTCGCC
*
59383045 GGCACTCGGGGATGCGTAGGTTATCTCCATTCCCGCACT
1 GGCACTCGAGGATGCGTAGGTTATCTCCATTCCCGCACT
59383084 GGCACTCGAGGATGCGTAGGTTATCTCCATTCCCGCACT
1 GGCACTCGAGGATGCGTAGGTTATCTCCATTCCCGCACT
59383123 ATCGGAGCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.17, C:0.31, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCACTCGAGGATGCGTAGGTTATCTCCATTCCCGCACT
Found at i:59387493 original size:12 final size:12
Alignment explanation
Indices: 59387476--59387502 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
59387466 GTACACTTAA
59387476 AAATATTAAAAC
1 AAATATTAAAAC
59387488 AAATATTAAAAC
1 AAATATTAAAAC
59387500 AAA
1 AAA
59387503 AAAAAACAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:59387698 original size:21 final size:22
Alignment explanation
Indices: 59387656--59387712 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
59387646 CAAAAAATGC
*
59387656 ACAAAAAAACAACACCCAAACA
1 ACAAAAAAACAACACACAAACA
59387678 ACAAAAATAACAACA-AC-AACA
1 ACAAAAA-AACAACACACAAACA
* *
59387699 CCAAAAAAAAAACA
1 ACAAAAAAACAACA
59387713 GCAATATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 6 0.19
21 10 0.32
22 8 0.26
23 7 0.23
ACGTcount: A:0.72, C:0.26, G:0.00, T:0.02
Consensus pattern (22 bp):
ACAAAAAAACAACACACAAACA
Found at i:59392368 original size:14 final size:14
Alignment explanation
Indices: 59392349--59392380 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
59392339 TAAAATCTTC
*
59392349 GATTCCAACTACAG
1 GATTCCAACTAAAG
59392363 GATTCCAACTAAAG
1 GATTCCAACTAAAG
59392377 GATT
1 GATT
59392381 TCTCCACTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (14 bp):
GATTCCAACTAAAG
Found at i:59408188 original size:25 final size:25
Alignment explanation
Indices: 59408129--59408206 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 25
59408119 AATTTAAGTG
*
59408129 TAATT-TTATTTTTGTAAATGATATT
1 TAATTATTATTTTT-TAAATAATATT
* *
59408154 CAAGTA--ATTTTTTAAATAATATT
1 TAATTATTATTTTTTAAATAATATT
* *
59408177 TAATTATTATTTTCTAAATATATACT
1 TAATTATTATTTTTTAAATA-ATATT
59408203 TAAT
1 TAAT
59408207 ATATAAAAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
23 14 0.33
24 6 0.14
25 14 0.33
26 8 0.19
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (25 bp):
TAATTATTATTTTTTAAATAATATT
Found at i:59416857 original size:39 final size:39
Alignment explanation
Indices: 59416814--59416895 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
59416804 TTGAGGAAGG
*
59416814 ATTATTGTAAATTCTAAACATTATATCAA-AAAAGTAAAA
1 ATTATGGTAAATTCTAAACATTATATCAAGAAAA-TAAAA
* *
59416853 ATTATGGTAAATTTTAAACATTATATTAAGAAAATAAAA
1 ATTATGGTAAATTCTAAACATTATATCAAGAAAATAAAA
59416892 ATTA
1 ATTA
59416896 AGAGAGTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
39 35 0.90
40 4 0.10
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (39 bp):
ATTATGGTAAATTCTAAACATTATATCAAGAAAATAAAA
Found at i:59419234 original size:25 final size:27
Alignment explanation
Indices: 59419184--59419234 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 27
59419174 ACAAATAATT
*
59419184 AAAAAATTATAATAAAATATTAAAAAC
1 AAAAAATTATAATAAAATATCAAAAAC
59419211 AAAAAA-TAT-ATAAAAT-TCATAAAA
1 AAAAAATTATAATAAAATATCA-AAAA
59419235 ATTTAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 2 0.09
25 11 0.50
26 3 0.14
27 6 0.27
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (27 bp):
AAAAAATTATAATAAAATATCAAAAAC
Found at i:59436813 original size:44 final size:44
Alignment explanation
Indices: 59436535--59436825 Score: 192
Period size: 44 Copynumber: 6.8 Consensus size: 44
59436525 ATAATACAGG
* * * **
59436535 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--CTAGAGA
* * *
59436581 TCTTA--TCCTTGAGATTACAGCGGAGCAGATCAAAGATAGTA-A
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCTAG-AGA
* * * * *
59436623 TCCTATCTCCTTGAGATTACAATGGAGCGGAT-TAA---AG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCTAGAGA
* * * * *
59436662 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATCACATC-AG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGCTAGAGA
* * * **
59436703 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--CTAGAGA
* * **
59436749 TCTTATCTCCCGGAGGTTACAGTGGAGCAGATTGAAGCTAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCTAGAGA
*
59436793 TCTTATCTCCCTGAGATTACAGCGGAGCAGATC
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATC
59436826 GAAGACACTA
Statistics
Matches: 187, Mismatches: 44, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
38 1 0.01
39 24 0.13
40 3 0.02
41 28 0.15
42 10 0.05
43 3 0.02
44 81 0.43
45 1 0.01
46 36 0.19
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCTAGAGA
Found at i:59436843 original size:87 final size:88
Alignment explanation
Indices: 59436703--59436902 Score: 208
Period size: 87 Copynumber: 2.3 Consensus size: 88
59436693 TCACATCAGG
* * *
59436703 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCGGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAA--TCAGATCCTATCTCCCGGAAGTTA
** *
59436768 CAGTGGAGCAGATTGAAGCTAGA-GA
64 CAGTGGAGCAGATT-AAAATAAAGGA
* * * * *
59436793 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-CACTATCCTATCTCCCTGAAGTTAC
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCA-GATCCTATCTCCCGGAAGTTAC
**
59436856 AGTGGAGTGGATTAAAATAAAGGA
65 AGTGGAGCAGATTAAAATAAAGGA
* *
59436880 TCTTATCTCTCTGAGGTTACAGC
1 TCTTATCTCCCTGAGATTACAGC
59436903 AGAGTAGGTC
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
86 7 0.08
87 52 0.56
89 1 0.01
90 33 0.35
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (88 bp):
TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCAGATCCTATCTCCCGGAAGTTACA
GTGGAGCAGATTAAAATAAAGGA
Found at i:59436856 original size:43 final size:44
Alignment explanation
Indices: 59436746--59436862 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
59436736 AAAGAATTTC
* * * *
59436746 AGATCTTATCTCCCGGAGGTTACAGTGGAGCAGATTGAAGCTAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCTAG
* *
59436790 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGAC-A-
1 AGATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAG-CTAG
**
59436833 CTATCCTATCTCCCTGAAGTTACAGTGGAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAG
59436863 TGGATTAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
43 24 0.39
44 37 0.60
45 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (44 bp):
AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCTAG
Found at i:59438853 original size:18 final size:19
Alignment explanation
Indices: 59438820--59438867 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
59438810 CTTAAATGTC
* *
59438820 TTTATTCTTGTTTGTTTA-T
1 TTTATTATT-TTTGTTAACT
*
59438839 TTTTTTATTTTTGTTAACT
1 TTTATTATTTTTGTTAACT
59438858 TTTATTATTT
1 TTTATTATTT
59438868 ACCATGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (19 bp):
TTTATTATTTTTGTTAACT
Found at i:59441267 original size:18 final size:19
Alignment explanation
Indices: 59441234--59441281 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
59441224 CTTAAATGTC
* *
59441234 TTTATTCTTGTTTGTTTA-T
1 TTTATTATT-TTTGTTAACT
*
59441253 TTTTTTATTTTTGTTAACT
1 TTTATTATTTTTGTTAACT
59441272 TTTATTATTT
1 TTTATTATTT
59441282 ACCATGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (19 bp):
TTTATTATTTTTGTTAACT
Found at i:59444987 original size:29 final size:28
Alignment explanation
Indices: 59444925--59444989 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
59444915 ATAAAATTGC
* *
59444925 TAAAATATGGGCTAAATCGAAATAAAAA
1 TAAAATATGGGCGAAATCGAAAGAAAAA
* *
59444953 TGAAAATGTAGGGCGAAATTGAAAGAAAAA
1 T-AAAATAT-GGGCGAAATCGAAAGAAAAA
59444983 TAAAATA
1 TAAAATA
59444990 AAAGGGACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 1 0.03
29 11 0.37
30 18 0.60
ACGTcount: A:0.57, C:0.05, G:0.18, T:0.20
Consensus pattern (28 bp):
TAAAATATGGGCGAAATCGAAAGAAAAA
Found at i:59446644 original size:44 final size:43
Alignment explanation
Indices: 59446451--59446963 Score: 304
Period size: 46 Copynumber: 12.1 Consensus size: 43
59446441 ACTGGCTTCA
* * *
59446451 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTTCTTTG
* * * * *
59446497 GTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGAC-GC---G
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA--TTACTTCTTTG
* ** * * *
59446538 ATCTACTCTGCTGTAA-CTTTAGAGAGATAAGA-T-C--CTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTTCTTTG
* *
59446577 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-TCTTTG
*
59446621 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTACTT-TTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA--T-TACTTCTTT-G
* * * * *
59446667 GTCTGCTCCACTGTAATTTCAGGGAGATAAGACCTAATAC---G
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTACTTCTTTG
** * * *
59446708 ATCCACTCTACTGTAA-CTTCAGAGAGATAAGA-T-C--CTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTTCTTTG
*
59446747 ATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-TCTTTG
* *
59446791 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCACTTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTTCTTTG
* * * ** *
59446837 GTCTGTTCCACTGTAATCTCAGGGAGATAAGA--CCTGATATG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTTCTTTG
** * * *
59446878 ATCCACTCTACTGTAA-CTTCAGAGAGATAAGA-T-C--CTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTTCTTTG
59446917 ATC-GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-TCTTTG
59446960 ATCT
1 ATCT
59446964 ACTTCACTTG
Statistics
Matches: 358, Mismatches: 70, Indels: 80
0.70 0.14 0.16
Matches are distributed among these distances:
36 2 0.01
37 1 0.00
38 23 0.06
39 58 0.16
40 7 0.02
41 80 0.22
43 7 0.02
44 72 0.20
45 6 0.02
46 94 0.26
47 7 0.02
48 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTTCTTTG
Found at i:59446996 original size:170 final size:170
Alignment explanation
Indices: 59446451--59446963 Score: 884
Period size: 170 Copynumber: 3.0 Consensus size: 170
59446441 ACTGGCTTCA
*
59446451 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAACTTCTTCGGTCTGTTCCACTGTAATCT
* ** * * *
59446516 CAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTAATCC
66 CAGGGAGATAAGACCTGATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
*
59446581 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTTG
131 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
* * * *
59446621 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTACTTTTTCGGTCTGCTCCACTGTAATTT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAACTTCTTCGGTCTGTTCCACTGTAATCT
*
59446686 CAGGGAGATAAGACCTAATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
66 CAGGGAGATAAGACCTGATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
59446751 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
131 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
*
59446791 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCACTTCTTCGGTCTGTTCCACTGTAATCT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAACTTCTTCGGTCTGTTCCACTGTAATCT
*
59446856 CAGGGAGATAAGACCTGATATGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAAT-C
66 CAGGGAGATAAGACCTGATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
59446920 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
131 GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
59446960 ATCT
1 ATCT
59446964 ACTTCACTTG
Statistics
Matches: 324, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
169 45 0.14
170 279 0.86
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (170 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAACTTCTTCGGTCTGTTCCACTGTAATCT
CAGGGAGATAAGACCTGATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
GCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
Found at i:59458668 original size:9 final size:9
Alignment explanation
Indices: 59458654--59458683 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
59458644 CTTGATGTCG
59458654 AAAATTAAA
1 AAAATTAAA
59458663 AAAATTAAAA
1 AAAATT-AAA
59458673 AAAATTAAA
1 AAAATTAAA
59458682 AA
1 AA
59458684 TACGATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAATTAAA
Found at i:59458675 original size:10 final size:10
Alignment explanation
Indices: 59458654--59458683 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
59458644 CTTGATGTCG
59458654 AAAATT-AAA
1 AAAATTAAAA
59458663 AAAATTAAAA
1 AAAATTAAAA
59458673 AAAATTAAAA
1 AAAATTAAAA
59458683 A
1 A
59458684 TACGATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATTAAAA
Found at i:59459750 original size:29 final size:28
Alignment explanation
Indices: 59459688--59459752 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
59459678 ATAAAATTGC
* *
59459688 TAAAATATGGGCTAAATCGAAATAAAAA
1 TAAAATATGGGCGAAATCGAAAGAAAAA
* *
59459716 TGAAAATGTAGGGCGAAATTGAAAGAAAAA
1 T-AAAATAT-GGGCGAAATCGAAAGAAAAA
59459746 TAAAATA
1 TAAAATA
59459753 AAAGGGACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 1 0.03
29 11 0.37
30 18 0.60
ACGTcount: A:0.57, C:0.05, G:0.18, T:0.20
Consensus pattern (28 bp):
TAAAATATGGGCGAAATCGAAAGAAAAA
Found at i:59461262 original size:28 final size:28
Alignment explanation
Indices: 59461172--59461269 Score: 81
Period size: 28 Copynumber: 3.3 Consensus size: 28
59461162 TGTAGGTACA
59461172 AATAGAAAATTTAAAGAGAAATGTGCTT
1 AATAGAAAATTTAAAGAGAAATGTGCTT
* * * * **
59461200 AATATATGTAAAA-ATAAATCATATATGTATATT
1 -A-ATA-G-AAAATTTAAA-GAGAAATGT-GCTT
59461233 AATAGAAAATTTAAAGAGAAATGTGCTT
1 AATAGAAAATTTAAAGAGAAATGTGCTT
59461261 AATAGAAAA
1 AATAGAAAA
59461270 ATTATTAATA
Statistics
Matches: 51, Mismatches: 12, Indels: 13
0.67 0.16 0.17
Matches are distributed among these distances:
28 11 0.22
29 11 0.22
30 8 0.16
31 8 0.16
32 11 0.22
33 2 0.04
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.31
Consensus pattern (28 bp):
AATAGAAAATTTAAAGAGAAATGTGCTT
Found at i:59461348 original size:22 final size:21
Alignment explanation
Indices: 59461319--59461359 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
59461309 TCCAAAAAAT
*
59461319 ATTAATAAATAATTTAAATTA
1 ATTAATAAATAATTAAAATTA
*
59461340 ATTACATAATTAATTAAAAT
1 ATTA-ATAAATAATTAAAAT
59461360 ATTGGAAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTAATAAATAATTAAAATTA
Found at i:59461578 original size:21 final size:21
Alignment explanation
Indices: 59461554--59461609 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
59461544 CACTATTATT
* * *
59461554 TCTAATTTCACTGCTATAGTA
1 TCTAATCTCACCGCTACAGTA
59461575 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
59461596 ACTAATCTCACCGC
1 TCTAATCTCACCGC
59461610 CACCGCTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:59462439 original size:23 final size:23
Alignment explanation
Indices: 59462382--59462426 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
59462372 CATATAATCA
59462382 AATCAAACTAAAAATGATAAATG
1 AATCAAACTAAAAATGATAAATG
59462405 AATCAAACTAAAAATGATAAAT
1 AATCAAACTAAAAATGATAAAT
59462427 TATAGTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.62, C:0.09, G:0.07, T:0.22
Consensus pattern (23 bp):
AATCAAACTAAAAATGATAAATG
Found at i:59463874 original size:14 final size:14
Alignment explanation
Indices: 59463850--59463883 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
59463840 TTTATTTTCC
*
59463850 CCCTCTTTTTCTCT
1 CCCTCTCTTTCTCT
*
59463864 CTCTCTCTTTCTCT
1 CCCTCTCTTTCTCT
59463878 CCCTCT
1 CCCTCT
59463884 TCAGTTTCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (14 bp):
CCCTCTCTTTCTCT
Found at i:59473970 original size:13 final size:13
Alignment explanation
Indices: 59473954--59473981 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
59473944 AGTTATAGTT
59473954 AGCAGAATTGTTA
1 AGCAGAATTGTTA
59473967 AGCAGAATTGTTA
1 AGCAGAATTGTTA
59473980 AG
1 AG
59473982 AGAGGCAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (13 bp):
AGCAGAATTGTTA
Found at i:59475171 original size:42 final size:42
Alignment explanation
Indices: 59475075--59475177 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
59475065 GTTTTCGAAC
* *
59475075 CTTGGTCAAAATGGCTATGGCACTAGTCAAAATAATTTTTCT
1 CTTGGTCAAAATTGCTATGGCACTAGTCAAAATAATTTTGCT
* *
59475117 -TCTGGTCAAAATTGCTATGG-ATTTGGTCAAAATAATTTTGCT
1 CT-TGGTCAAAATTGCTATGGCA-CTAGTCAAAATAATTTTGCT
*
59475159 CTTGGTCAAAATTGTTATG
1 CTTGGTCAAAATTGCTATG
59475178 CTGATGGATA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
41 2 0.04
42 50 0.94
43 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (42 bp):
CTTGGTCAAAATTGCTATGGCACTAGTCAAAATAATTTTGCT
Found at i:59475179 original size:21 final size:20
Alignment explanation
Indices: 59475119--59475179 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
59475109 ATTTTTCTTC
* *
59475119 TGGTCAAAATTGCTATGGATT
1 TGGTCAAAATTGTTAT-GCTT
** *
59475140 TGGTCAAAATAATTTTGCTCT
1 TGGTCAAAATTGTTATGCT-T
59475161 TGGTCAAAATTGTTATGCT
1 TGGTCAAAATTGTTATGCT
59475180 GATGGATATA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (20 bp):
TGGTCAAAATTGTTATGCTT
Found at i:59485976 original size:8 final size:8
Alignment explanation
Indices: 59485963--59485987 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
59485953 AGAAGCATGG
59485963 TATGGGTT
1 TATGGGTT
59485971 TATGGGTT
1 TATGGGTT
59485979 TATGGGTT
1 TATGGGTT
59485987 T
1 T
59485988 TGGTTATAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.36, T:0.52
Consensus pattern (8 bp):
TATGGGTT
Found at i:59485999 original size:14 final size:14
Alignment explanation
Indices: 59485978--59486009 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
59485968 GTTTATGGGT
59485978 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
59485991 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
59486005 TTATA
1 TTATA
59486010 AGCAAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:59486164 original size:24 final size:25
Alignment explanation
Indices: 59486137--59486184 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
59486127 AAAAGAAAGT
59486137 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAATGAAAAAAAA
** *
59486161 TTAAATTACTTAAAATGAAAAAAA
1 TTAAAGAACATAAAATGAAAAAAA
59486185 TATGGGGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (25 bp):
TTAAAGAACATAAAATGAAAAAAAA
Found at i:59486485 original size:28 final size:28
Alignment explanation
Indices: 59486445--59486502 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
59486435 TTAATTTCAA
* *
59486445 ATTTTGTTGTATATATGTACATACATAC
1 ATTTTGTTATATATATATACATACATAC
*
59486473 ATTTTGTTATATATATATACATACGTAC
1 ATTTTGTTATATATATATACATACATAC
59486501 AT
1 AT
59486503 ATTTTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (28 bp):
ATTTTGTTATATATATATACATACATAC
Found at i:59487446 original size:18 final size:18
Alignment explanation
Indices: 59487423--59487458 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
59487413 TTTCAAATAA
59487423 GTAAATTTTTCGGCATGT
1 GTAAATTTTTCGGCATGT
59487441 GTAAATTTTTCGGCATGT
1 GTAAATTTTTCGGCATGT
59487459 ACTCTCGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (18 bp):
GTAAATTTTTCGGCATGT
Found at i:59487526 original size:21 final size:21
Alignment explanation
Indices: 59487502--59487542 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
59487492 TAACGCATTG
59487502 GATATGA-CATTTTGTTTTCTC
1 GATATGAGCATTTT-TTTTCTC
*
59487523 GATATGAGGATTTTTTTTCT
1 GATATGAGCATTTTTTTTCT
59487543 AAAAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.20, C:0.10, G:0.17, T:0.54
Consensus pattern (21 bp):
GATATGAGCATTTTTTTTCTC
Found at i:59489867 original size:22 final size:22
Alignment explanation
Indices: 59489816--59489861 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
59489806 TAGTTTAAAC
**
59489816 TTTAAATTCCTTTATCCTTTAT
1 TTTAAATTTATTTATCCTTTAT
59489838 TTTAAATTTATTTAT-CTTTAT
1 TTTAAATTTATTTATCCTTTAT
59489859 TTT
1 TTT
59489862 TGAATTCTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTAAATTTATTTATCCTTTAT
Found at i:59493187 original size:237 final size:236
Alignment explanation
Indices: 59492767--59493480 Score: 1194
Period size: 236 Copynumber: 3.0 Consensus size: 236
59492757 ACAGAGTTGT
* * *
59492767 GTGCTATATATAGAGAGGTTGACATGCAGCAACCAAGGGCCACAGAGAAGTGGAATGGTCAATGC
1 GTGCTATATATAGAGAGGTTAATATGCAGTAACCAAGGGCCACAGAGAAGTGGAATGGTCAATGC
* * * *
59492832 TATAGTAAATAAGTCTTGGTGATTTACGAGTGTGATACTTCCCAATGATCTATATATCGACCACT
66 --TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACT
*
59492897 GGCCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGGGAATTCAATA
129 GGCCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATA
59492962 ATCGATAATTATCTCTTATTTTACTTATGAGGTTACATATATCA
194 ATCGATAATTATCTCTTA-TTTACTTATGAGGTTACATATATCA
* *
59493006 GTGCTATATATAGAGAGGTTAATATGCAGTAAACAAGGGCCACAGAGAAGTGGAATGGTAAATGC
1 GTGCTATATATAGAGAGGTTAATATGCAGTAACCAAGGGCCACAGAGAAGTGGAATGGTCAATGC
*
59493071 TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATGTATCTACAACTGG
66 TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGG
* * **
59493136 CCTCCAACATTTGACTAGGAACTGATAACTAATGCTAATAATTTGTGTCTTGAGAATTCAATAAT
131 CCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATAAT
* *
59493201 CGATAATTATCTCTTATTTACCTATGAGGTTAAATATATCA
196 CGATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
* *
59493242 GCGGTATATATAGAGAGGTTAATATGCAGTAACCAAGGGCCACAGAGAAGTGGAATGGTCAATGC
1 GTGCTATATATAGAGAGGTTAATATGCAGTAACCAAGGGCCACAGAGAAGTGGAATGGTCAATGC
59493307 TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGG
66 TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGG
* * *
59493372 CCTCCAACATTTGTCCAGGAACTGATAACTAATGCTGATAATTACTATCTTGAGACTTCAATAAT
131 CCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATAAT
*
59493437 CGATAATTATCTCTTATTTACTTATGAGGTTACATATATAA
196 CGATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
59493478 GTG
1 GTG
59493481 ATATGAGCTT
Statistics
Matches: 442, Mismatches: 33, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
236 246 0.56
237 136 0.31
239 60 0.14
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (236 bp):
GTGCTATATATAGAGAGGTTAATATGCAGTAACCAAGGGCCACAGAGAAGTGGAATGGTCAATGC
TAGTAAATAAGTCTTGGTGATTTACAAGGGTGATACTTCCCAATGATCTATATATCTACAACTGG
CCTCCAACATTTGTCCAGGAACTGATAACTAATGCTAATAATTACTGTCTTGAGAATTCAATAAT
CGATAATTATCTCTTATTTACTTATGAGGTTACATATATCA
Found at i:59497586 original size:31 final size:31
Alignment explanation
Indices: 59497548--59497625 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
59497538 ACTATAAAAA
59497548 TAGTCACTTTTGTTTGCCTCAGGTTACATTT
1 TAGTCACTTTTGTTTGCCTCAGGTTACATTT
* *
59497579 TAGTCACTTTTGTTTGTCTTAGGTTACATTT
1 TAGTCACTTTTGTTTGCCTCAGGTTACATTT
*
59497610 TAGTCACTTATGTTTG
1 TAGTCACTTTTGTTTG
59497626 AAATGTTACG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (31 bp):
TAGTCACTTTTGTTTGCCTCAGGTTACATTT
Found at i:59500054 original size:18 final size:18
Alignment explanation
Indices: 59500031--59500069 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
59500021 TTTACCAACT
59500031 CCATTCTCCAAATTACCA
1 CCATTCTCCAAATTACCA
59500049 CCATTCTCCAAATTACCA
1 CCATTCTCCAAATTACCA
59500067 CCA
1 CCA
59500070 AGTCCGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.41, G:0.00, T:0.26
Consensus pattern (18 bp):
CCATTCTCCAAATTACCA
Found at i:59500567 original size:18 final size:19
Alignment explanation
Indices: 59500532--59500568 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
59500522 AGCAATAAGG
59500532 AGCGCCGCAACAAGCCCTC
1 AGCGCCGCAACAAGCCCTC
59500551 AGCGCCGCAAC-AGCCCTC
1 AGCGCCGCAACAAGCCCTC
59500569 GCCTCTAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.24, C:0.49, G:0.22, T:0.05
Consensus pattern (19 bp):
AGCGCCGCAACAAGCCCTC
Found at i:59502688 original size:71 final size:71
Alignment explanation
Indices: 59502595--59502745 Score: 284
Period size: 71 Copynumber: 2.1 Consensus size: 71
59502585 AAAGAATCAG
*
59502595 TGGCGAATCCAGTTTTTGTTTTTAAGTCGACAACTAAATTTTTTGTTTTCAAAAAACCGGTTTCG
1 TGGCGACTCCAGTTTTTGTTTTTAAGTCGACAACTAAATTTTTTGTTTTCAAAAAACCGGTTTCG
59502660 ACAGCT
66 ACAGCT
59502666 TGGCGACTCCAGTTTTTGTTTTTAAGTCGACAACTAAATTTTTTGTTTTCAAAAAACCGGTTTCG
1 TGGCGACTCCAGTTTTTGTTTTTAAGTCGACAACTAAATTTTTTGTTTTCAAAAAACCGGTTTCG
*
59502731 GCAGCT
66 ACAGCT
59502737 TGGCGACTC
1 TGGCGACTC
59502746 TGCTGGGGAC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (71 bp):
TGGCGACTCCAGTTTTTGTTTTTAAGTCGACAACTAAATTTTTTGTTTTCAAAAAACCGGTTTCG
ACAGCT
Found at i:59502889 original size:6 final size:6
Alignment explanation
Indices: 59502878--59502904 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
59502868 TGTTGGCTAC
59502878 TTTGCA TTTGCA TTTGCA TTTGCA TTT
1 TTTGCA TTTGCA TTTGCA TTTGCA TTT
59502905 TTGCATTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGCA
Found at i:59513627 original size:44 final size:46
Alignment explanation
Indices: 59513560--59513709 Score: 146
Period size: 44 Copynumber: 3.3 Consensus size: 46
59513550 TACTGGTGGC
* * *
59513560 GAAGCAGATCAAA-G-AAAGTAGATCTTGTCTTCATGTACTGGCAT
1 GAAGTAGATCAAAGGAAAAGCAGATCTTGTCTTCATGTACTGGCGT
* * *** *
59513604 GAAGTAGATCAAAGG-TAA-CAGATCTTGCCTTCCCATACTGGCGGC
1 GAAGTAGATCAAAGGAAAAGCAGATCTTGTCTTCATGTACTGGC-GT
* * *
59513649 GAAGCAAATCAAAGGAAAAAGCAGATCTTGTCTTCATGTATTGGCGT
1 GAAGTAGATCAAAGG-AAAAGCAGATCTTGTCTTCATGTACTGGCGT
59513696 GAAGTAGATCAAAG
1 GAAGTAGATCAAAG
59513710 ACATCAGGTT
Statistics
Matches: 81, Mismatches: 20, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
44 31 0.38
45 16 0.20
47 15 0.19
48 19 0.23
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (46 bp):
GAAGTAGATCAAAGGAAAAGCAGATCTTGTCTTCATGTACTGGCGT
Found at i:59513744 original size:92 final size:89
Alignment explanation
Indices: 59513533--59513712 Score: 270
Period size: 92 Copynumber: 2.0 Consensus size: 89
59513523 TGAAAAGCAG
* *
59513533 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAAATCAAAGAAAGCAGATCTTGTCTTCATGTAC
**
59513598 TGGCATGAAGTAGATCAAAGGTAA
66 TGGCATGAAGTAGATCAAAGACAA
*
59513622 CAGATCTTGCCTTCCCATACTGGCGGCGAAGCAAATCAAAGGAAAAAGCAGATCTTGTCTTCATG
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAAATCAAA-G--AAAGCAGATCTTGTCTTCATG
* *
59513687 TATTGGCGTGAAGTAGATCAAAGACA
63 TACTGGCATGAAGTAGATCAAAGACA
59513713 TCAGGTTCTG
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
89 38 0.47
90 1 0.01
92 42 0.52
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (89 bp):
CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAAATCAAAGAAAGCAGATCTTGTCTTCATGTAC
TGGCATGAAGTAGATCAAAGACAA
Found at i:59513990 original size:44 final size:45
Alignment explanation
Indices: 59513929--59514021 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 45
59513919 GAATCAATCG
* **
59513929 AAGAAAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCA
1 AAGAAAGCAGATATTGTCTTCACATACTGGTCGTGAAGTAGATCA
* * *
59513973 AAGAAAGCAGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCG
1 AAGAAAGCAGATATTGTCTTCACATACTGGTCGTGAAGTAGATCA
59514018 AAGA
1 AAGA
59514022 TACAAGTCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 26 0.62
45 16 0.38
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (45 bp):
AAGAAAGCAGATATTGTCTTCACATACTGGTCGTGAAGTAGATCA
Found at i:59514089 original size:44 final size:44
Alignment explanation
Indices: 59514026--59514133 Score: 171
Period size: 44 Copynumber: 2.5 Consensus size: 44
59514016 CGAAGATACA
* *
59514026 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACAAAAGTAACC
1 AGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACAAAAGTAACC
*
59514070 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGTAACC
1 AGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACAAAAGTAACC
* *
59514114 AATCCTATCTCCTTGAAGTT
1 AGTCTTATCTCCTTGAAGTT
59514134 GTAATGGAGT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (44 bp):
AGTCTTATCTCCTTGAAGTTACAGTGGAGCAGACAAAAGTAACC
Found at i:59514578 original size:18 final size:19
Alignment explanation
Indices: 59514543--59514578 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
59514533 AGCAATAAGG
59514543 AGCGCCGCAACAAGCCCTC
1 AGCGCCGCAACAAGCCCTC
59514562 AGCGCCGCAAC-AGCCCT
1 AGCGCCGCAACAAGCCCT
59514579 TGCCTCTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.25, C:0.47, G:0.22, T:0.06
Consensus pattern (19 bp):
AGCGCCGCAACAAGCCCTC
Found at i:59515070 original size:14 final size:13
Alignment explanation
Indices: 59515045--59515079 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
59515035 ACCTAAGAGA
59515045 TTTTTTT-ATTTT
1 TTTTTTTCATTTT
59515057 TTTTTTTCATTTT
1 TTTTTTTCATTTT
59515070 TTTTCTTTCA
1 TTTT-TTTCA
59515080 CTCGGTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.33
13 9 0.43
14 5 0.24
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTCATTTT
Found at i:59521138 original size:51 final size:51
Alignment explanation
Indices: 59521062--59521162 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
59521052 GGCTTCAAAA
59521062 GGGTGCCTTTGTTTACTGTTGGCTGAAT-TTAGGTATCATTCATATTCTCAT
1 GGGTGCCTTTGTTTACTGTTGGCTGAATGTT-GGTATCATTCATATTCTCAT
* *
59521113 GGGTGTCTTTGTTTGCTGTTGGCTGAATGTTGGTATCATTCATATTCTCA
1 GGGTGCCTTTGTTTACTGTTGGCTGAATGTTGGTATCATTCATATTCTCA
59521163 AGGCTGTCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 45 0.96
52 2 0.04
ACGTcount: A:0.16, C:0.15, G:0.24, T:0.46
Consensus pattern (51 bp):
GGGTGCCTTTGTTTACTGTTGGCTGAATGTTGGTATCATTCATATTCTCAT
Found at i:59525784 original size:3 final size:3
Alignment explanation
Indices: 59525776--59525812 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
59525766 AAAAACAATT
*
59525776 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
59525813 AATTGCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:59527481 original size:44 final size:43
Alignment explanation
Indices: 59527420--59527914 Score: 232
Period size: 44 Copynumber: 11.4 Consensus size: 43
59527410 ATCCACTCTG
* * * * *
59527420 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTGATTTTGATCTGCTCCA
* ** * *
59527464 CTGTAACTTCAGGGAGATAGGATAGTG-TCTTCGATCTGCTCCG
1 CTGTAACTTCAGGGAGATAAGATCTTGAT-TTTGATCTGCTCCA
** **
59527507 CTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACT-TCAGGGAGATAAGATCT-TGATTTTGATCTGCTCCA
* * *
59527551 CTGTAACCTCAGGGAGATAAGATC-TGAAATTCTCTGGTCTACTCCA
1 CTGTAACTTCAGGGAGATAAGATCTTG--ATT-T-TGATCTGCTCCA
* * * * * *
59527597 CTGTAACCTCAGGGAAATAAGA-CCTGA-TGTGATCTTCTCTA
1 CTGTAACTTCAGGGAGATAAGATCTTGATTTTGATCTGCTCCA
* * * *
59527638 CTGTAACTTCAGAGAGATAAGATC----CTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCTTGATTTTGATCTGCTCCA
* * * *
59527677 TTGTAA-TCTCAAGGAGATAGGAT-TACT-ATCTTTGATCTGCTCCG
1 CTGTAACT-TCAGGGAGATAAGATCT--TGAT-TTTGATCTGCTCCA
** **
59527721 CTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACT-TCAGGGAGATAAGATCT-TGATTTTGATCTGCTCCA
* * *
59527765 CTGTAACCTCAGGGAGATAAGATC-TGAAATTCTTCGGTCTACTCCA
1 CTGTAACTTCAGGGAGATAAGATCTTG--ATT-TT-GATCTGCTCCA
* * * * ** * **
59527811 ATGTAACCTCAGGGTGATAAGA-CCTGA-TGCGATCTACTCTG
1 CTGTAACTTCAGGGAGATAAGATCTTGATTTTGATCTGCTCCA
* * * *
59527852 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTGATTTTGATCTGCTCCA
59527896 CTGTAA-TCTCAGGGAGATA
1 CTGTAACT-TCAGGGAGATA
59527915 GGATTACTAG
Statistics
Matches: 340, Mismatches: 80, Indels: 62
0.71 0.17 0.13
Matches are distributed among these distances:
38 1 0.00
39 26 0.08
41 54 0.16
42 7 0.02
43 37 0.11
44 149 0.44
45 5 0.01
46 61 0.18
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTGTAACTTCAGGGAGATAAGATCTTGATTTTGATCTGCTCCA
Found at i:59527609 original size:46 final size:46
Alignment explanation
Indices: 59527541--59528008 Score: 170
Period size: 44 Copynumber: 10.7 Consensus size: 46
59527531 TCTGGCTTCA
*
59527541 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTG
* * * *
59527587 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTG--A---TGTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTG
* * * * **
59527628 ATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAA-TC-C-G
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTCTG
* * * * * *
59527672 -----CTCCATTGTAATCTCAAGGAGATAGGAT-T--ACTATCTTTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTCTG
* * * ***** *
59527711 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT-TC-A
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTG
*
59527755 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT-TCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCT-G
* * * * *
59527801 GTCTACTCCAATGTAACCTCAGGGTGATAAGACCTG--A-T-GC-G
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTG
** * * ** *
59527842 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATT-T-TA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTCTG
** * * * * *
59527886 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-T--ACTAGCT-TCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTCT-G
** * *
59527930 ATCTACTCCGTTGTAATCTCAGGGAGATAAGATCTGAAATTTCTTTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAA-TTCTCTG
* ** *
59527977 GTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGA
59528009 CCTGTATAAT
Statistics
Matches: 308, Mismatches: 80, Indels: 67
0.68 0.18 0.15
Matches are distributed among these distances:
35 1 0.00
37 3 0.01
39 22 0.07
41 56 0.18
42 5 0.02
43 4 0.01
44 117 0.38
45 4 0.01
46 64 0.21
47 30 0.10
48 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (46 bp):
ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTG
Found at i:59527773 original size:214 final size:215
Alignment explanation
Indices: 59527369--59527964 Score: 903
Period size: 214 Copynumber: 2.7 Consensus size: 215
59527359 TTAGGTTTAA
** * *
59527369 GTCTACTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCCACTCTGCTGTAACCTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
* *
59527434 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCG
66 AGATAAGATCC----TTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCG
59527497 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
126 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
59527562 GGGAGATAAGATCTGAAATTC-TCTG
191 GGGAGATAAGATCTGAAATTCTTC-G
* * * *
59527587 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
* * *
59527652 AGATAAGATCC-TTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTG
66 AGATAAGATCCTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCGATCTG
59527716 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
131 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
59527781 ATAAGATCTGAAATTCTTCG
196 ATAAGATCTGAAATTCTTCG
* *
59527801 GTCTACTCCAATGTAACCTCAGGGTGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
* *
59527866 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
66 AGATAAGATCC----TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCGA
* *
59527931 TCTACTCCGTTGTAATCTCAGGGAGATAAGATCT
127 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
59527965 GAAATTTCTT
Statistics
Matches: 344, Mismatches: 26, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
213 32 0.09
214 166 0.48
215 2 0.01
218 68 0.20
219 76 0.22
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (215 bp):
GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
AGATAAGATCCTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCGATCTG
CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTCTTCG
Found at i:59540443 original size:26 final size:28
Alignment explanation
Indices: 59540414--59540478 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 28
59540404 TAAATAAAAA
59540414 AATAGATATGAAATAA-TA-ATATATAT
1 AATAGATATGAAATAATTATATATATAT
* ***
59540440 AATATATATGTTTTAATTATATATATAT
1 AATAGATATGAAATAATTATATATATAT
59540468 AGATAGATATG
1 A-ATAGATATG
59540479 TATATAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 12 0.39
27 2 0.06
28 9 0.29
29 8 0.26
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (28 bp):
AATAGATATGAAATAATTATATATATAT
Found at i:59540552 original size:3 final size:3
Alignment explanation
Indices: 59540544--59540580 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
59540534 AAAAACAATT
59540544 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
59540581 AATTGCTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:59549309 original size:27 final size:28
Alignment explanation
Indices: 59549255--59549308 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
59549245 AGGTGTGAAG
*
59549255 TTAAATAAATGAATGATTAAATTAAAAT
1 TTAAATAAATGAATGATTAAAATAAAAT
*
59549283 TTAAAT-AATGAATTATATAAAATAAA
1 TTAAATAAATGAATGAT-TAAAATAAA
59549309 TAAATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (28 bp):
TTAAATAAATGAATGATTAAAATAAAAT
Found at i:59549688 original size:3 final size:3
Alignment explanation
Indices: 59549680--59549708 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
59549670 GTCAAAAAAG
59549680 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
59549709 AACATTTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:59551761 original size:17 final size:18
Alignment explanation
Indices: 59551727--59551772 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
59551717 CCGTTATGTC
59551727 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
59551742 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
59551759 CGCGACCGCGACCG
1 CGCGACCGCGACCG
59551773 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:59553081 original size:119 final size:119
Alignment explanation
Indices: 59552870--59553110 Score: 482
Period size: 119 Copynumber: 2.0 Consensus size: 119
59552860 ACTTTTTCTT
59552870 CCAATGCATCAAGCTGTTTAATGTTGAACTTATAGAGCAAATTTATGCTCGAAATAGTTGACATA
1 CCAATGCATCAAGCTGTTTAATGTTGAACTTATAGAGCAAATTTATGCTCGAAATAGTTGACATA
59552935 GGAGTAATTGTTAGATCATCCATGACCGTGTATGTAATGACCCCTTTTACGTAA
66 GGAGTAATTGTTAGATCATCCATGACCGTGTATGTAATGACCCCTTTTACGTAA
59552989 CCAATGCATCAAGCTGTTTAATGTTGAACTTATAGAGCAAATTTATGCTCGAAATAGTTGACATA
1 CCAATGCATCAAGCTGTTTAATGTTGAACTTATAGAGCAAATTTATGCTCGAAATAGTTGACATA
59553054 GGAGTAATTGTTAGATCATCCATGACCGTGTATGTAATGACCCCTTTTACGTAA
66 GGAGTAATTGTTAGATCATCCATGACCGTGTATGTAATGACCCCTTTTACGTAA
59553108 CCA
1 CCA
59553111 CCCTCATTTG
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 122 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (119 bp):
CCAATGCATCAAGCTGTTTAATGTTGAACTTATAGAGCAAATTTATGCTCGAAATAGTTGACATA
GGAGTAATTGTTAGATCATCCATGACCGTGTATGTAATGACCCCTTTTACGTAA
Found at i:59566613 original size:4 final size:4
Alignment explanation
Indices: 59566604--59566641 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
59566594 ACAAGCTGTT
* *
59566604 TTTA TTTA TTTA TTTA TCTA TTCA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
59566642 ACCTTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:59566745 original size:17 final size:16
Alignment explanation
Indices: 59566693--59566752 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 16
59566683 TTATGCATTT
*
59566693 TTTTTATTATTGTCATTA
1 TTTTT-TTATT-TTATTA
59566711 TTATTTTTA-TTTATTTA
1 TT-TTTTTATTTTA-TTA
59566728 TTTTTGTTATTTTATTA
1 TTTTT-TTATTTTATTA
59566745 TTTCTTTT
1 TTT-TTTT
59566753 TGATATTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
16 5 0.14
17 17 0.47
18 11 0.31
19 3 0.08
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTTTTATTTTATTA
Found at i:59566747 original size:21 final size:22
Alignment explanation
Indices: 59566715--59566761 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
59566705 TCATTATTAT
*
59566715 TTTTATTTATTTATTTTTGTTA
1 TTTTATTTATTTATTTTTGATA
*
59566737 TTTTA-TTATTTCTTTTTGATA
1 TTTTATTTATTTATTTTTGATA
59566758 TTTT
1 TTTT
59566762 CATGTCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (22 bp):
TTTTATTTATTTATTTTTGATA
Found at i:59568790 original size:13 final size:13
Alignment explanation
Indices: 59568763--59568809 Score: 76
Period size: 13 Copynumber: 3.5 Consensus size: 13
59568753 TTTTTAAGTT
59568763 TTTATTTATTTTTC
1 TTTATTTA-TTTTC
59568777 TTTATTTATTTTC
1 TTTATTTATTTTC
*
59568790 TTTATTTGTTTTC
1 TTTATTTATTTTC
59568803 TTTATTT
1 TTTATTT
59568810 GTTTATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
13 24 0.75
14 8 0.25
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTATTTATTTTC
Found at i:59568801 original size:37 final size:36
Alignment explanation
Indices: 59568734--59568825 Score: 91
Period size: 37 Copynumber: 2.5 Consensus size: 36
59568724 TGATTTGTCC
*
59568734 TTTTTCATTTCTTT-TTTTCTTTTTAAGTTTTTATTTA
1 TTTTTC-TTTATTTATTTTCTTTTTAAG-TTTTATTTA
* *
59568771 TTTTTCTTTATTTATTTTCTTTATT-TGTTTTCTTTA
1 TTTTTCTTTATTTATTTTCTTT-TTAAGTTTTATTTA
59568807 TTTGTT-TATTATTTATTTT
1 TTT-TTCT-TTATTTATTTT
59568826 ATAAAATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
36 18 0.38
37 28 0.58
38 2 0.04
ACGTcount: A:0.13, C:0.07, G:0.03, T:0.77
Consensus pattern (36 bp):
TTTTTCTTTATTTATTTTCTTTTTAAGTTTTATTTA
Done.