Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 213 of 218
Found at i:63406639 original size:18 final size:18
Alignment explanation
Indices: 63406612--63406668 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
63406602 TACGACCGTT
63406612 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
63406630 TACGGAACTATTCACGTA
1 TACGGTACTATTCACGTA
*
63406648 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
63406666 TAC
1 TAC
63406669 AGTAGTTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:63416103 original size:29 final size:29
Alignment explanation
Indices: 63416071--63416126 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
63416061 TCCGCATCCC
63416071 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
63416100 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
63416127 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:63421155 original size:40 final size:41
Alignment explanation
Indices: 63421098--63421187 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 41
63421088 TCCTCGTAGG
* *
63421098 CGCGATTTGTGTCCACGTAAGC-AAAGCGCGCTGACGTGGA
1 CGCGATTTGTGTACACGTAACCGAAAGCGCGCTGACGTGGA
** * *
63421138 CGCGATTTGCTG-ACACGTCCCCTGACATCGCGCTGACGTGGA
1 CGCGATTTG-TGTACACGTAACC-GAAAGCGCGCTGACGTGGA
63421180 CGCGATTT
1 CGCGATTT
63421188 TGGGGAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
40 15 0.37
41 2 0.05
42 24 0.59
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (41 bp):
CGCGATTTGTGTACACGTAACCGAAAGCGCGCTGACGTGGA
Found at i:63425352 original size:29 final size:29
Alignment explanation
Indices: 63425320--63425375 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
63425310 TCCGCATCCC
63425320 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
63425349 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
63425376 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:63431289 original size:21 final size:21
Alignment explanation
Indices: 63431263--63431303 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63431253 ATCTGCTCAA
* *
63431263 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
63431284 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
63431304 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:63436223 original size:34 final size:34
Alignment explanation
Indices: 63436175--63436242 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
63436165 CTAGCTCCGC
*
63436175 ATCCCTCTTCATATTCAGTATCCATTTCATGCAT
1 ATCCCTCTTCATATTCACTATCCATTTCATGCAT
* * * *
63436209 ATCCTTCTTCATATTTACTATTCATTTGATGCAT
1 ATCCCTCTTCATATTCACTATCCATTTCATGCAT
63436243 CTCTCGCTGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.06, T:0.46
Consensus pattern (34 bp):
ATCCCTCTTCATATTCACTATCCATTTCATGCAT
Found at i:63445076 original size:24 final size:25
Alignment explanation
Indices: 63445039--63445088 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
63445029 AAAGAAAAAA
* *
63445039 TATATTTAT-GAAAATTCTAAATTT
1 TATATTTATAAAAAATTATAAATTT
*
63445063 TATATTTTTAAAAAATTATAAATTT
1 TATATTTATAAAAAATTATAAATTT
63445088 T
1 T
63445089 TTAAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (25 bp):
TATATTTATAAAAAATTATAAATTT
Found at i:63447103 original size:26 final size:26
Alignment explanation
Indices: 63447027--63447106 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 26
63447017 GATTAAAGGT
* * *
63447027 CCCTTGAGTTTGAATGGGTCCGAGGA
1 CCCTTGAGTTTGAGTTGGTCAGAGGA
* *
63447053 CCCTTGAGTTTGAGTTAGTCAGAGGT
1 CCCTTGAGTTTGAGTTGGTCAGAGGA
* *
63447079 CCCTTGAAG-TTGGGTTGGTCGGAGGA
1 CCCTTG-AGTTTGAGTTGGTCAGAGGA
63447105 CC
1 CC
63447107 ATGAGCAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 42 0.95
27 2 0.05
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.29
Consensus pattern (26 bp):
CCCTTGAGTTTGAGTTGGTCAGAGGA
Found at i:63453746 original size:37 final size:39
Alignment explanation
Indices: 63453696--63453799 Score: 122
Period size: 41 Copynumber: 2.7 Consensus size: 39
63453686 TTTGAAGTAA
*
63453696 TAAATTGACACCCAGTGTCTCATC-AGCTAAACC-GAAG
1 TAAATTGACACCCAGTGTCTCATCGAACTAAACCAGAAG
* * * * *
63453733 TAAATTGGCACCCAGTGCCTCATCGAATTAATCCAAAGTAG
1 TAAATTGACACCCAGTGTCTCATCGAACTAAACC--AGAAG
63453774 TAAATTGACACCCAGTGTCTCATCGA
1 TAAATTGACACCCAGTGTCTCATCGA
63453800 CCCGAAGTCG
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
37 22 0.40
38 6 0.11
41 27 0.49
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (39 bp):
TAAATTGACACCCAGTGTCTCATCGAACTAAACCAGAAG
Found at i:63453786 original size:41 final size:39
Alignment explanation
Indices: 63453668--63453799 Score: 117
Period size: 41 Copynumber: 3.4 Consensus size: 39
63453658 GTTTGGCACA
* ** *
63453668 CAGTGCCTCATCGGATAATTTGAAGTAATAAATTGACACC
1 CAGTGCCTCATCGAATAA-TCCAAGTAGTAAATTGACACC
* * * * *
63453708 CAGTGTCTCATC-AGCTAAACC--GAAGTAAATTGGCACC
1 CAGTGCCTCATCGA-ATAATCCAAGTAGTAAATTGACACC
63453745 CAGTGCCTCATCGAATTAATCCAAAGTAGTAAATTGACACC
1 CAGTGCCTCATCGAA-TAATCC-AAGTAGTAAATTGACACC
*
63453786 CAGTGTCTCATCGA
1 CAGTGCCTCATCGA
63453800 CCCGAAGTCG
Statistics
Matches: 71, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
37 24 0.34
38 6 0.08
40 14 0.20
41 27 0.38
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (39 bp):
CAGTGCCTCATCGAATAATCCAAGTAGTAAATTGACACC
Found at i:63454676 original size:12 final size:12
Alignment explanation
Indices: 63454659--63454706 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
63454649 AAACCCTTAG
63454659 CTTTTCTTTCTC
1 CTTTTCTTTCTC
*
63454671 CTTTTCTTTCTTT
1 CTTTTCTTTC-TC
*
63454684 CTTTT-TTTTTC
1 CTTTTCTTTCTC
63454695 C-TTTCTTTCTC
1 CTTTTCTTTCTC
63454706 C
1 C
63454707 CTTCTGTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
10 3 0.10
11 8 0.27
12 13 0.43
13 6 0.20
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
CTTTTCTTTCTC
Found at i:63454691 original size:16 final size:15
Alignment explanation
Indices: 63454660--63454702 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
63454650 AACCCTTAGC
*
63454660 TTTTCTTTCTCCTTTT
1 TTTTCTTTCT-TTTTT
*
63454676 CTTTCTTTCTTTTTT
1 TTTTCTTTCTTTTTT
*
63454691 TTTCCTTTCTTT
1 TTTTCTTTCTTT
63454703 CTCCCTTCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTCTTTCTTTTTT
Found at i:63457014 original size:31 final size:30
Alignment explanation
Indices: 63456979--63457037 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
63456969 AGAGGTGGGA
*
63456979 TGGGAAAGGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AAGGAATAAAAATTTTAGGGGAAAAG
* * *
63457010 TGGGAGGGAGTAAAAATTTTGGGGGAAA
1 TGGGAAGGAATAAAAATTTTAGGGGAAA
63457038 GTAAAAGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (30 bp):
TGGGAAGGAATAAAAATTTTAGGGGAAAAG
Found at i:63457184 original size:29 final size:30
Alignment explanation
Indices: 63457126--63457184 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
63457116 AGGGGAGGGG
* * **
63457126 AGTAAAAGTTTTGGGGGGAAAGTGGGAAAA
1 AGTAAAAGTTTTGAGGGAAAAGTGAAAAAA
63457156 AGTAAAAGTTTTGAGGGAAAAGT-AAAAAA
1 AGTAAAAGTTTTGAGGGAAAAGTGAAAAAA
63457185 CTCAACTCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.00, G:0.32, T:0.20
Consensus pattern (30 bp):
AGTAAAAGTTTTGAGGGAAAAGTGAAAAAA
Found at i:63461872 original size:18 final size:17
Alignment explanation
Indices: 63461848--63461892 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
63461838 ATTAAAAAAA
63461848 ATAAATATATACT-AAAT
1 ATAAATAT-TACTCAAAT
*
63461865 ATATAATATTACTCTAAT
1 ATA-AATATTACTCAAAT
63461883 ATAAATATTA
1 ATAAATATTA
63461893 AAATAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAAATATTACTCAAAT
Found at i:63464458 original size:11 final size:11
Alignment explanation
Indices: 63464444--63464521 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 11
63464434 TATTTTTTAA
63464444 TTTTAAAATAC
1 TTTTAAAATAC
63464455 TTTTAAAATAC
1 TTTTAAAATAC
**** *
63464466 TTTTTTTTTAA
1 TTTTAAAATAC
**
63464477 TTTTTTAAT--
1 TTTTAAAATAC
*
63464486 T-TTAAAATAT
1 TTTTAAAATAC
*
63464496 TTTTAAAATAT
1 TTTTAAAATAC
63464507 TTTTAAAATAC
1 TTTTAAAATAC
63464518 TTTT
1 TTTT
63464522 TTAATTTTTG
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
8 5 0.09
9 1 0.02
10 1 0.02
11 47 0.87
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:63464470 original size:41 final size:40
Alignment explanation
Indices: 63464423--63464529 Score: 144
Period size: 41 Copynumber: 2.6 Consensus size: 40
63464413 TAAATATTTT
63464423 TATTTTTATTTTATTTTTTAATTTTAAAATACTTTTAAAA
1 TATTTTTATTTTATTTTTTAATTTTAAAATACTTTTAAAA
*
63464463 TACTTTTT-TTTTAATTTTTTAATTTTAAAATATTTTTAAAA
1 TA-TTTTTATTTT-ATTTTTTAATTTTAAAATACTTTTAAAA
***
63464504 TATTTTTAAAATACTTTTTTAATTTT
1 TATTTTTATTTTA-TTTTTTAATTTT
63464530 TGTTTTAATT
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
40 12 0.20
41 47 0.80
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.64
Consensus pattern (40 bp):
TATTTTTATTTTATTTTTTAATTTTAAAATACTTTTAAAA
Found at i:63468176 original size:20 final size:21
Alignment explanation
Indices: 63468131--63468178 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
63468121 ACTAATCCTC
63468131 ATTTAATTAGTAAAAATATTT
1 ATTTAATTAGTAAAAATATTT
*
63468152 CTTTATATTA-TAAAAATA-TT
1 ATTTA-ATTAGTAAAAATATTT
63468172 ATTTAAT
1 ATTTAAT
63468179 GAATTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 6 0.25
21 12 0.50
22 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTTAATTAGTAAAAATATTT
Found at i:63469455 original size:10 final size:10
Alignment explanation
Indices: 63469442--63469475 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
63469432 TCTTGTTGAT
*
63469442 ATATATATAT
1 ATATATATAG
63469452 ATATATATAG
1 ATATATATAG
*
63469462 ATAGATATAG
1 ATATATATAG
63469472 ATAT
1 ATAT
63469476 CTAATAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (10 bp):
ATATATATAG
Found at i:63489827 original size:31 final size:31
Alignment explanation
Indices: 63489782--63489843 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
63489772 ACAGTCCTTA
*
63489782 AACTATTCTAAAGTTTTCGTTTAAGTTATTG
1 AACTATTCTAAAGTTTTCGTTTAAGTCATTG
*
63489813 AACTATT-TAGAAGTTTTTGTTTAAGTCATTG
1 AACTATTCTA-AAGTTTTCGTTTAAGTCATTG
63489844 GGTTGTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 26 0.93
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.48
Consensus pattern (31 bp):
AACTATTCTAAAGTTTTCGTTTAAGTCATTG
Found at i:63492049 original size:7 final size:7
Alignment explanation
Indices: 63492037--63492062 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63492027 TCTTTCTTTC
63492037 TTTTTAT
1 TTTTTAT
63492044 TTTTTAT
1 TTTTTAT
63492051 TTTTTAT
1 TTTTTAT
63492058 TTTTT
1 TTTTT
63492063 TGACATGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:63498978 original size:29 final size:30
Alignment explanation
Indices: 63498936--63499015 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 30
63498926 TGATTGAATC
*
63498936 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTGCACAT
* *
63498966 AAATCAAAGTTCATGCATACAATTGCACATT
1 AAATCAAAGTTCATGTATAAAATTGCACA-T
* *
63498997 AAACCATAGTTCATGTATA
1 AAATCAAAGTTCATGTATA
63499016 GTTTTGAGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 21 0.50
30 5 0.12
31 16 0.38
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTGCACAT
Found at i:63499170 original size:18 final size:18
Alignment explanation
Indices: 63499143--63499183 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
63499133 AATACCAAAC
*
63499143 AAATTAAAAATTATAAAG
1 AAATTAAAAATTATAAAA
* *
63499161 AAATTTAAAATTTTAAAA
1 AAATTAAAAATTATAAAA
63499179 AAATT
1 AAATT
63499184 CAAGTGATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AAATTAAAAATTATAAAA
Found at i:63503402 original size:21 final size:22
Alignment explanation
Indices: 63503378--63503418 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
63503368 TTTTTAAAAA
*
63503378 AATATTTTAT-TTTTTTATTTT
1 AATATTTAATATTTTTTATTTT
63503399 AATATTTAATATTTTTTATT
1 AATATTTAATATTTTTTATT
63503419 GAAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
AATATTTAATATTTTTTATTTT
Found at i:63503432 original size:22 final size:22
Alignment explanation
Indices: 63503360--63503432 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 22
63503350 TAGCACATAT
**
63503360 TATTTT-TA-TTTTTAAAAAAA
1 TATTTTATATTTTTTATTAAAA
**
63503380 TATTTTAT-TTTTTTATTTTAA
1 TATTTTATATTTTTTATTAAAA
*
63503401 TATTTAATATTTTTTATTGAAAA
1 TATTTTATATTTTTTATT-AAAA
63503424 T-TTTTATAT
1 TATTTTATAT
63503433 AGGCATCTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
20 6 0.15
21 16 0.39
22 16 0.39
23 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (22 bp):
TATTTTATATTTTTTATTAAAA
Found at i:63503553 original size:18 final size:18
Alignment explanation
Indices: 63503513--63503553 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
63503503 AATGTGTTCT
* *
63503513 AAATTACATAATATATAA
1 AAATAACATAATATAGAA
63503531 AAATAACATAATATAGAA
1 AAATAACATAATATAGAA
*
63503549 TAATA
1 AAATA
63503554 TAAACTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (18 bp):
AAATAACATAATATAGAA
Found at i:63504023 original size:24 final size:25
Alignment explanation
Indices: 63503995--63504050 Score: 98
Period size: 23 Copynumber: 2.3 Consensus size: 25
63503985 TACATTTTCA
63503995 ATTTTTTTTTAAAAA-AAATTGTAC
1 ATTTTTTTTTAAAAACAAATTGTAC
63504019 A-TTTTTTTTAAAAACAAATTGTAC
1 ATTTTTTTTTAAAAACAAATTGTAC
63504043 ATTTTTTT
1 ATTTTTTT
63504051 ACAAGTCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 13 0.43
24 11 0.37
25 6 0.20
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTTTTTTTTAAAAACAAATTGTAC
Found at i:63504026 original size:23 final size:24
Alignment explanation
Indices: 63503997--63504050 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
63503987 CATTTTCAAT
63503997 TTTTTTTTAAAAA-AAATTGTACA
1 TTTTTTTTAAAAACAAATTGTACA
63504020 TTTTTTTTAAAAACAAATTGTACA
1 TTTTTTTTAAAAACAAATTGTACA
63504044 TTTTTTT
1 TTTTTTT
63504051 ACAAGTCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 13 0.43
24 17 0.57
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.54
Consensus pattern (24 bp):
TTTTTTTTAAAAACAAATTGTACA
Found at i:63504690 original size:14 final size:16
Alignment explanation
Indices: 63504665--63504696 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
63504655 TTACCATGAA
63504665 TTTTTTATAAAT-ATT
1 TTTTTTATAAATAATT
63504680 TTTTTTA-AAATAATT
1 TTTTTTATAAATAATT
63504695 TT
1 TT
63504697 GAGCAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTTATAAATAATT
Found at i:63511429 original size:31 final size:31
Alignment explanation
Indices: 63511393--63511468 Score: 152
Period size: 31 Copynumber: 2.5 Consensus size: 31
63511383 GAGCTAAACC
63511393 GATAATCAAAATAGAGTGTAGGGACCAAGTT
1 GATAATCAAAATAGAGTGTAGGGACCAAGTT
63511424 GATAATCAAAATAGAGTGTAGGGACCAAGTT
1 GATAATCAAAATAGAGTGTAGGGACCAAGTT
63511455 GATAATCAAAATAG
1 GATAATCAAAATAG
63511469 TACATGTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.22
Consensus pattern (31 bp):
GATAATCAAAATAGAGTGTAGGGACCAAGTT
Found at i:63513765 original size:203 final size:201
Alignment explanation
Indices: 63513221--63513837 Score: 760
Period size: 203 Copynumber: 3.0 Consensus size: 201
63513211 ATTTGAGTTG
* * * *
63513221 AATCTTTATATGGTTCTTCGAATC-AGAGATAATCCATGCAGAGCCTTGTGTGTGTTCGTAATGC
1 AATCTTTATATGGTTCTTCGGATCGA-AGATAATCTATGCAGAGCCTTGT-TGTGTTTGTGATGC
* * * * * *
63513285 TGTTTTTATATGAGGCAATTCTAGTTAGTAGGTATACGGTATT-CCTGGTCGAGTGTCGAGCAAG
64 TG--TTTATATGGGGCAATTCTAGTTAGTAGGCACACGATATTCCCAGCT-GAGTGTCGAGCAAG
* * *
63513349 TCCCGAAGATTTCAGGTACAAGAAAGGAAATGTATGTTGTTGTTGTGCACTTGTTTTGTATGTAT
126 TCCCGAAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCA-TTGTTTTGTATGTAT
*
63513414 AGCCTGCGATGC
190 AGCCTGCAATGC
*
63513426 AATCTTTATATGGTTCTTCGG-GCTGAA-ATAATCTATGCAGAGCCTTGTTTGTGTTTGTGATGC
1 AATCTTTATATGGTTCTTCGGATC-GAAGATAATCTATGCAGAGCCTTG-TTGTGTTTGTGATGC
* * * * * *
63513489 TGTTTATGTTGGGCAATTCTAGTTAGTAGGCACAC-AGTGTTCACGGTTGAGTGTCGAGCAAGTC
64 TGTTTATATGGGGCAATTCTAGTTAGTAGGCACACGA-TATTCCCAGCTGAGTGTCGAGCAAGTC
* * *
63513553 CCAAAGATTTCAGGTTCGAGAAAGGCAATGTATTTTGTTGTTGTGCATGTGTTTTCTATGTATAG
128 CCGAAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCAT-TGTTTTGTATGTATAG
63513618 CCTGCAATGC
192 CCTGCAATGC
* * *
63513628 AATCTTTATATGGTTCTTTGGATCGAAGATAATCTATGCAGAGCCTTGTTCGTGTTTGGGATACT
1 AATCTTTATATGGTTCTTCGGATCGAAGATAATCTATGCAGAGCCTTGTT-GTGTTTGTGATGCT
* ** *
63513693 GTTTATATGGGGCAATTCTAGTTGGTAGGCACACGATATTCCCAGCTGAGTGTTAAGCAGGTCCC
65 GTTTATATGGGGCAATTCTAGTTAGTAGGCACACGATATTCCCAGCTGAGTGTCGAGCAAGTCCC
* * * **
63513758 GAAGATTTCAGGTACGAGAAAGGCGATATATTTTTTTGTTGTTTATTTGTTTTGTATGTATAGCC
130 GAAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCA-TTGTTTTGTATGTATAGCC
63513823 TGCAATGC
194 TGCAATGC
63513831 AAT-TTTA
1 AATCTTTA
63513838 CTCTTTGCTT
Statistics
Matches: 357, Mismatches: 44, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
201 1 0.00
202 142 0.40
203 155 0.43
204 36 0.10
205 22 0.06
206 1 0.00
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (201 bp):
AATCTTTATATGGTTCTTCGGATCGAAGATAATCTATGCAGAGCCTTGTTGTGTTTGTGATGCTG
TTTATATGGGGCAATTCTAGTTAGTAGGCACACGATATTCCCAGCTGAGTGTCGAGCAAGTCCCG
AAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCATTGTTTTGTATGTATAGCCTG
CAATGC
Found at i:63529725 original size:21 final size:22
Alignment explanation
Indices: 63529683--63529731 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
63529673 TAAAAGAAGT
* *
63529683 TATTTATTTATTTATTTATTAA
1 TATTTATTAATTTATATATTAA
63529705 -ATTTATTAATTTAGTAT-TTAA
1 TATTTATTAATTTA-TATATTAA
63529726 TATTTA
1 TATTTA
63529732 AAATAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTTATTAATTTATATATTAA
Found at i:63533342 original size:13 final size:13
Alignment explanation
Indices: 63533324--63533361 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
63533314 GATCATTTGG
*
63533324 GTTTTTCAGTCAT
1 GTTTTTAAGTCAT
*
63533337 GTTTTTGAGTCAT
1 GTTTTTAAGTCAT
63533350 -TTTTTAAGTCAT
1 GTTTTTAAGTCAT
63533362 TTCTAGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.18, C:0.11, G:0.16, T:0.55
Consensus pattern (13 bp):
GTTTTTAAGTCAT
Found at i:63533353 original size:12 final size:12
Alignment explanation
Indices: 63533325--63533363 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63533315 ATCATTTGGG
*
63533325 TTTTTCAGTCAT
1 TTTTTAAGTCAT
*
63533337 GTTTTTGAGTCAT
1 -TTTTTAAGTCAT
63533350 TTTTTAAGTCAT
1 TTTTTAAGTCAT
63533362 TT
1 TT
63533364 CTAGTGCTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.18, C:0.10, G:0.13, T:0.59
Consensus pattern (12 bp):
TTTTTAAGTCAT
Found at i:63542560 original size:177 final size:179
Alignment explanation
Indices: 63542329--63542652 Score: 474
Period size: 177 Copynumber: 1.8 Consensus size: 179
63542319 TGTTGAATGT
* * * *
63542329 ATGCATGCATGCATATATACATACATGTACATGAAAATCAAGATGAGAGGAACTTT-A-AA-GCA
1 ATGCATACATACATAGATACATACATATACATGAAAATCAAGATGAGAGGAACTTTAACAAGGCA
* * *
63542391 AACATCAAAAGTACATCAACATGTTGTATCACGCAAGCAAAGCAAGGGTTGTTTTACAAACTCTA
66 AACATCAAAAGTACATCAACACGATGTATCACGCAAGC-AAGCAAGGGATGTTTTACAAACTCTA
*
63542456 GTTTGGAGAATGCATATCCTCATCCATCTATGCATGCATGATACATGCAC
130 ATTTGGAGAATGCATATCCTCATCCATCTATGCATGCATGATACATGCAC
* * * *
63542506 ATGCATACATACATAGATCCATACATATACATGAAAATGAGGATTAGAGGAACTTTAAAGCAAGG
1 ATGCATACATACATAGATACATACATATACATGAAAATCAAGATGAGAGGAACTTT-AA-CAAGG
* *
63542571 CAAACATCAAAAGTACATCAACACGATGTATCATGCAAGCAAGCAAGGGATGTTTTACAAATTCT
64 CAAACATCAAAAGTACATCAACACGATGTATCACGCAAGCAAGCAAGGGATGTTTTACAAACTCT
63542636 AATTTGGAGAATGCATA
129 AATTTGGAGAATGCATA
63542653 CATACATGCA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
177 48 0.38
179 1 0.01
181 41 0.32
182 38 0.30
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (179 bp):
ATGCATACATACATAGATACATACATATACATGAAAATCAAGATGAGAGGAACTTTAACAAGGCA
AACATCAAAAGTACATCAACACGATGTATCACGCAAGCAAGCAAGGGATGTTTTACAAACTCTAA
TTTGGAGAATGCATATCCTCATCCATCTATGCATGCATGATACATGCAC
Found at i:63542685 original size:148 final size:150
Alignment explanation
Indices: 63542517--63542803 Score: 454
Period size: 148 Copynumber: 1.9 Consensus size: 150
63542507 TGCATACATA
* * *
63542517 CATAGATCCATACATATACATGAAAATGAGGATTAGAGGAACTTTAAAGCAAGGCAAACATCAAA
1 CATAGATACATACATATACATGAAAATGAAGATGAGAGGAACTTTAAAGCAAGGCAAACATCAAA
* *
63542582 AGTACATCAACACGAT-GTATCATGCAAGC-AAGCAAGGG-ATGTTTTACAAATTCTAATTTGGA
66 AGTACATCAACACG-TGGTACCATGCAAACAAAGCAAGGGTATGTTTTACAAATTCTAATTTGGA
63542644 GAATGCATACATACATGCATG
130 GAATGCATACATACATGCATG
*
63542665 CATAGATACATACATATACATGAAAATGAAGATGAGAGGAACTTTAAAGCAAGGCAAACATCGAA
1 CATAGATACATACATATACATGAAAATGAAGATGAGAGGAACTTTAAAGCAAGGCAAACATCAAA
* * *
63542730 AGTACATCAACATGTGGTACCATGCAAACAAAGCAAGGGTTTTTTTTTACAAATTCTAATTTGGA
66 AGTACATCAACACGTGGTACCATGCAAACAAAGCAAGGG-TATGTTTTACAAATTCTAATTTGGA
63542795 GAATGCATA
130 GAATGCATA
63542804 TCCATCCATC
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
147 1 0.01
148 85 0.67
149 9 0.07
151 31 0.25
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (150 bp):
CATAGATACATACATATACATGAAAATGAAGATGAGAGGAACTTTAAAGCAAGGCAAACATCAAA
AGTACATCAACACGTGGTACCATGCAAACAAAGCAAGGGTATGTTTTACAAATTCTAATTTGGAG
AATGCATACATACATGCATG
Found at i:63544495 original size:145 final size:145
Alignment explanation
Indices: 63544156--63544750 Score: 623
Period size: 145 Copynumber: 4.1 Consensus size: 145
63544146 GTTATGTTAG
* * *
63544156 AACCCGAAAAACTTCGTTACATACACCGAAAC--AGTTCATCAACCAAATCTATTATGTGAAA-A
1 AACCCG-AAAACTTCATTACATACACC-AAACAAAGTTCATCAACCAAATCTATCACGT-AAACA
* * ** * * *
63544218 ACTCGTGTTCACAGAGGCTAGAACAATCGTGTTTGGGTTAAAGCAAA-ATTTGATTACACAGTCT
63 ACTCTTGTTCAAAGAACCTAGAACGATCGTGTTCGAGTTAAAG-AAACATTTGATTACACAGTCT
*
63544282 ----AAGAGCTATTGAACT
127 AACCAAGAGCTACTGAACT
* * *
63544297 AACCCAAAAACTTCATTACATACACCAAACAGAGTTCATCAACCAAATCTATCACGTGAACAACT
1 AACCCGAAAACTTCATTACATACACCAAACAAAGTTCATCAACCAAATCTATCACGTAAACAACT
* * * *
63544362 CTTGTTCAAAGAACCTAGAATGACCATGTTCGAGTTAAAGAAACATTTGATAACACAGTCTAACC
66 CTTGTTCAAAGAACCTAGAACGATCGTGTTCGAGTTAAAGAAACATTTGATTACACAGTCTAACC
* *
63544427 AAAAGCTACTTAACT
131 AAGAGCTACTGAACT
*** * **
63544442 AACCCGAAAACTTCATTACATACACCAAACAAAGTTCATCAACTGGATGTATCACACAAACAACT
1 AACCCGAAAACTTCATTACATACACCAAACAAAGTTCATCAACCAAATCTATCACGTAAACAACT
* * * * * *
63544507 CTTTTTCATACAGCCTAGAACGATTGTGTTCGAGTTAAAGCAACATTTGATTACACAGTCTAACC
66 CTTGTTCAAAGAACCTAGAACGATCGTGTTCGAGTTAAAGAAACATTTGATTACACAGTCTAACC
63544572 AAGAGCTACTGAACT
131 AAGAGCTACTGAACT
* *** *
63544587 AACCCCG-AAACTTCATTACATACACCAAACAAAGTTCATTAATTGAATCTATCACGTAAACAAG
1 AA-CCCGAAAACTTCATTACATACACCAAACAAAGTTCATCAACCAAATCTATCACGTAAACAAC
* * * * * *
63544651 TCCTGTTCGAAGAACCTAGAATGATCGTGTTTGAGTTACTGCTTTGAGAAACATTTGATTACAGA
65 TCTTGTTCAAAGAACCTAGAACGATCGTGTTCGAGTTA-------AAGAAACATTTGATTACACA
*
63544716 GTCTAACCAAGAGCTAATGAACT
123 GTCTAACCAAGAGCTACTGAACT
63544739 AACCCGAAAACT
1 AACCCGAAAACT
63544751 ATTAACTAAA
Statistics
Matches: 377, Mismatches: 60, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
139 4 0.01
140 24 0.06
141 78 0.21
145 217 0.58
146 4 0.01
151 4 0.01
152 46 0.12
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.25
Consensus pattern (145 bp):
AACCCGAAAACTTCATTACATACACCAAACAAAGTTCATCAACCAAATCTATCACGTAAACAACT
CTTGTTCAAAGAACCTAGAACGATCGTGTTCGAGTTAAAGAAACATTTGATTACACAGTCTAACC
AAGAGCTACTGAACT
Found at i:63555864 original size:4 final size:4
Alignment explanation
Indices: 63555857--63555910 Score: 81
Period size: 4 Copynumber: 13.5 Consensus size: 4
63555847 CTAAGGTAGG
* * *
63555857 TACA TACA TACA TACA TGCA TGCA TGCA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
63555905 TACA TA
1 TACA TA
63555911 TCCATGTATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:63558302 original size:60 final size:60
Alignment explanation
Indices: 63558236--63558356 Score: 163
Period size: 60 Copynumber: 2.0 Consensus size: 60
63558226 TTTGGGGATG
** * *
63558236 TATTTAGAATGTTTTAAAGTTT-GAGAATCAATTTAGAATGATGATATTAGTTTAGAGATA
1 TATTTAGAACATTTTAAAGTTTGGA-AATCAATTTAGAATCATGATATTAATTTAGAGATA
* * *
63558296 TATTTAGAACATTTTAAAGTTTGGAAATCAATTTGGACTCATGATATTAATTTAGGGATA
1 TATTTAGAACATTTTAAAGTTTGGAAATCAATTTAGAATCATGATATTAATTTAGAGATA
63558356 T
1 T
63558357 CTAATGTAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
60 51 0.96
61 2 0.04
ACGTcount: A:0.37, C:0.04, G:0.17, T:0.41
Consensus pattern (60 bp):
TATTTAGAACATTTTAAAGTTTGGAAATCAATTTAGAATCATGATATTAATTTAGAGATA
Found at i:63559654 original size:19 final size:19
Alignment explanation
Indices: 63559630--63559667 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63559620 TTTATTCTAG
* *
63559630 AATTATTAAAAACATAAAA
1 AATTATAAAAAAAATAAAA
63559649 AATTATAAAAAAAATAAAA
1 AATTATAAAAAAAATAAAA
63559668 GTTGTCTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
AATTATAAAAAAAATAAAA
Found at i:63568785 original size:12 final size:12
Alignment explanation
Indices: 63568770--63568798 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
63568760 CAAAAAAAGA
63568770 AAAAAAAATCCC
1 AAAAAAAATCCC
63568782 AAAAAAAATCCC
1 AAAAAAAATCCC
63568794 AAAAA
1 AAAAA
63568799 GAAGCAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.72, C:0.21, G:0.00, T:0.07
Consensus pattern (12 bp):
AAAAAAAATCCC
Found at i:63571913 original size:3 final size:3
Alignment explanation
Indices: 63571897--63571941 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
63571887 CTTTATTTAG
* *
63571897 CTT CTT C-T CAT CTT CTT CTT CTT CGT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
63571942 ACTTTATTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.02, C:0.36, G:0.02, T:0.60
Consensus pattern (3 bp):
CTT
Found at i:63573740 original size:132 final size:130
Alignment explanation
Indices: 63573492--63573804 Score: 400
Period size: 132 Copynumber: 2.4 Consensus size: 130
63573482 GTGTATGTAA
* * * *
63573492 TGACAGTGATTTGTTTCTATCAAGGGTATGAGAATTGTACC----ATATATATATACCCGACGTT
1 TGACAGTGATTTGTTTCTATCAAGGGTATGTGAATTGTACCATATATATATATATAACAGACATT
* ** * * ** * *
63573553 TAGCCTACTGGTCATAGGTGCTGTCCTCATAATTCATGTTGTAGATTCGAGTTATGATGTGTGTG
66 TAGCCTACTGATCATAGGTGCTACCCTCATAATCCACGTCCTAAATTCAAGTTATGATGTGTGTG
* * *
63573618 TGACAGTGGTTTGTTTCTATCAAGGGTATGTGAATTATACCATATATATATATATATATAGAACA
1 TGACAGTGATTTGTTTCTATCAAGGGTATGTGAATTGTACCATATATATATATATA-ACAG-ACA
*
63573683 TTTAGTCTACTGATCATAGGTGCTACCCTCATAATCCACGTCCTAAATTCAAGTTATGATGTGTG
64 TTTAGCCTACTGATCATAGGTGCTACCCTCATAATCCACGTCCTAAATTCAAGTTATGATGTGTG
63573748 TG
129 TG
* * *
63573750 TGACAGTGATTTGTTTCTATCAAAGATGTGTGAATTGTACCATATATATATATAT
1 TGACAGTGATTTGTTTCTATCAAGGGTATGTGAATTGTACCATATATATATATAT
63573805 GACTATTAGG
Statistics
Matches: 159, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
126 38 0.24
130 11 0.07
131 1 0.01
132 109 0.69
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (130 bp):
TGACAGTGATTTGTTTCTATCAAGGGTATGTGAATTGTACCATATATATATATATAACAGACATT
TAGCCTACTGATCATAGGTGCTACCCTCATAATCCACGTCCTAAATTCAAGTTATGATGTGTGTG
Found at i:63575414 original size:7 final size:7
Alignment explanation
Indices: 63575402--63575427 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63575392 AAAGTATTTT
63575402 AAAATTA
1 AAAATTA
63575409 AAAATTA
1 AAAATTA
63575416 AAAATTA
1 AAAATTA
63575423 AAAAT
1 AAAAT
63575428 ATATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAATTA
Found at i:63575875 original size:27 final size:26
Alignment explanation
Indices: 63575814--63575875 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
63575804 CATTTTGGAT
63575814 TTTTTAATTAATTTTATATAAAAATA
1 TTTTTAATTAATTTTATATAAAAATA
* *
63575840 TTATATAATTTATTTTATA-AAAGAATGA
1 TT-TTTAATTAATTTTATATAAA-AAT-A
63575868 TTTTTAAT
1 TTTTTAAT
63575876 CATTACTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 5 0.17
27 22 0.73
28 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (26 bp):
TTTTTAATTAATTTTATATAAAAATA
Found at i:63577748 original size:159 final size:159
Alignment explanation
Indices: 63577366--63577788 Score: 582
Period size: 159 Copynumber: 2.7 Consensus size: 159
63577356 AAAATTCAGT
* *
63577366 TTAAAATTCTGGGTTTTTCTTATTTTTCATGTTGGTGATTGTTTGATTGATGAAATTTTAGCTTA
1 TTAAAATTGTGGGTTTTTCTTATTTTTCATGTTGGTGATTGTCTGATTGATGAAATTTTAGCTTA
** * * *
63577431 GAATTACTTTAATCAGGTTTATTGTGTTGCAAGTAAACTT-CAGGTAAAAAATTTTCTTCAATGT
66 GGGTTACTTTAATCAGGTTTCTTGTGTTGCAAGTAAACTTGTAGGTAAAAAATTTTCTTCAATAT
** * *
63577495 TTAACAATGGTTGCTTTGATGAATTTTGT
131 CAAACAATGGTTGCTTTGATGAATTTAGA
* * * *
63577524 TTGAAATTG-GGG-TTTTCTTATTTTTCATGTTGGTGATTGTCTGATTGATGGACTTTTAACTTA
1 TTAAAATTGTGGGTTTTTCTTATTTTTCATGTTGGTGATTGTCTGATTGATGAAATTTTAGCTTA
* **** *
63577587 GGGTTACTTTAATCAGGTTTCTTGTGTCGCAAGTAAACTTGTAGGTAATTTTTTTTCTTTAATAT
66 GGGTTACTTTAATCAGGTTTCTTGTGTTGCAAGTAAACTTGTAGGTAAAAAATTTTCTTCAATAT
63577652 CAAACAATGGTTGCTTTGATGAATTTAGA
131 CAAACAATGGTTGCTTTGATGAATTTAGA
* * *
63577681 TTAAAATTGTGGGTTTTTCTTATCTTTCATGTTGGTCATTGTCTGATTGATGAAATTTTGGCTTA
1 TTAAAATTGTGGGTTTTTCTTATTTTTCATGTTGGTGATTGTCTGATTGATGAAATTTTAGCTTA
* * *
63577746 GGGTTACTCTAATTAGGTTTCTTGTTTTGCAAGTAAACTTGTA
66 GGGTTACTTTAATCAGGTTTCTTGTGTTGCAAGTAAACTTGTA
63577789 CTAACAATGG
Statistics
Matches: 230, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
156 83 0.36
157 53 0.23
158 10 0.04
159 84 0.37
ACGTcount: A:0.24, C:0.09, G:0.19, T:0.47
Consensus pattern (159 bp):
TTAAAATTGTGGGTTTTTCTTATTTTTCATGTTGGTGATTGTCTGATTGATGAAATTTTAGCTTA
GGGTTACTTTAATCAGGTTTCTTGTGTTGCAAGTAAACTTGTAGGTAAAAAATTTTCTTCAATAT
CAAACAATGGTTGCTTTGATGAATTTAGA
Found at i:63585348 original size:20 final size:21
Alignment explanation
Indices: 63585319--63585358 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
63585309 TATATTTTAT
*
63585319 TTTATATAAT-ATAATAAATA
1 TTTATATAATCATAAAAAATA
*
63585339 TTTATTTAATCATAAAAAAT
1 TTTATATAATCATAAAAAAT
63585359 TATATATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTATATAATCATAAAAAATA
Found at i:63585365 original size:26 final size:26
Alignment explanation
Indices: 63585306--63585366 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
63585296 AGTAATAATG
* *
63585306 TTATATATTTTATTTTATATAATATAA
1 TTATATA-TTTATTTAATATAATAAAA
*
63585333 -TAAATATTTATTTAATCATAA-AAAA
1 TTATATATTTATTTAAT-ATAATAAAA
63585358 TTATATATT
1 TTATATATT
63585367 GAAATGGATA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
TTATATATTTATTTAATATAATAAAA
Found at i:63600969 original size:24 final size:23
Alignment explanation
Indices: 63600915--63600969 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
63600905 GGACTAACTG
*
63600915 TAAAACATATATTTGAATTTGTAA
1 TAAAA-ATATATTAGAATTTGTAA
* *
63600939 TATAAAATATATTAGTAATTTTTTA
1 TA-AAAATATATTAG-AATTTGTAA
63600964 TAAAAA
1 TAAAAA
63600970 ATAATTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (23 bp):
TAAAAATATATTAGAATTTGTAA
Found at i:63601623 original size:22 final size:22
Alignment explanation
Indices: 63601598--63601641 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
63601588 TTAAATAGTG
63601598 TGTTAACTCTATCCTTTTTGAA
1 TGTTAACTCTATCCTTTTTGAA
63601620 TGTTAACTCTATCCTTTTTGAA
1 TGTTAACTCTATCCTTTTTGAA
63601642 AACATACAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.09, T:0.50
Consensus pattern (22 bp):
TGTTAACTCTATCCTTTTTGAA
Found at i:63609183 original size:17 final size:17
Alignment explanation
Indices: 63609161--63609224 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
63609151 CTTAGAGTTC
63609161 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTT
* * *
63609178 TAATTGTGTAATCTTAGAGTTC
1 TAATTGTAT-A-C--AG-CTTT
63609200 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTT
63609217 TAATTGTA
1 TAATTGTA
63609225 GCCATTGATG
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
17 18 0.50
18 3 0.08
19 1 0.03
20 1 0.03
21 3 0.08
22 10 0.28
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (17 bp):
TAATTGTATACAGCTTT
Found at i:63609199 original size:39 final size:39
Alignment explanation
Indices: 63609145--63609223 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
63609135 GAGATGATTA
63609145 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
63609184 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
63609223 T
1 T
63609224 AGCCATTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (39 bp):
TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
Found at i:63614292 original size:39 final size:39
Alignment explanation
Indices: 63614238--63614316 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
63614228 GAGATGATTA
*
63614238 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAGTTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
*
63614277 TGTAATCTTAGAGTTCTAATTGTATACTGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
63614316 T
1 T
63614317 AGCCATTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.25, C:0.10, G:0.16, T:0.48
Consensus pattern (39 bp):
TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
Found at i:63620325 original size:22 final size:22
Alignment explanation
Indices: 63620290--63620331 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
63620280 TGCTTGTTGT
* *
63620290 CATTTTGATGTTATTTTGCTGC
1 CATTTTGATATTATATTGCTGC
*
63620312 CATTTTGCTATTATATTGCT
1 CATTTTGATATTATATTGCT
63620332 ACTATTTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.55
Consensus pattern (22 bp):
CATTTTGATATTATATTGCTGC
Found at i:63623505 original size:38 final size:38
Alignment explanation
Indices: 63623416--63623504 Score: 115
Period size: 38 Copynumber: 2.3 Consensus size: 38
63623406 AACATTTATA
* * * *
63623416 TTTAATATAATATAATATTTATTATATTTATTTGTGTT
1 TTTAATATAATAAAAGATTTATTATATTTATTAGTATT
63623454 TTTAATATAATAAAAGATTTATTATATTTATGGTAGTATTT
1 TTTAATATAATAAAAGATTTATTATATTTAT--TAGTA-TT
63623495 TTTAATATAA
1 TTTAATATAA
63623505 ATACTTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 29 0.66
40 3 0.07
41 12 0.27
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (38 bp):
TTTAATATAATAAAAGATTTATTATATTTATTAGTATT
Found at i:63629793 original size:3 final size:3
Alignment explanation
Indices: 63629785--63629819 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
63629775 AATAGGAAGA
*
63629785 AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63629820 ATTTATTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63631500 original size:44 final size:43
Alignment explanation
Indices: 63631398--63631688 Score: 145
Period size: 44 Copynumber: 6.8 Consensus size: 43
63631388 CCTTTATTTT
* * * * *
63631398 AATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATTACTGGCCTC
* *
63631441 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCCTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATTACTGGCCTC
* * *** *
63631485 GATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TTTTT
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGAT-T--ACTGGCCTC
* * * *
63631531 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGA--CCTGG--TGC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATTACTGGCCT-C
* * * * *
63631572 GATCTGCTCTACTGTAACTTCAGAGAGATAAGA-T-C---CTTT
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATTACTGGCCTC
* * ****
63631611 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATATTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATTACTGGCCTC
*
63631655 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGAT
63631689 CTGCAATTCT
Statistics
Matches: 189, Mismatches: 42, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
39 28 0.15
40 4 0.02
41 28 0.15
43 28 0.15
44 69 0.37
45 2 0.01
46 29 0.15
47 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACTCAGGGAGATAAGATTACTGGCCTC
Found at i:63633159 original size:15 final size:15
Alignment explanation
Indices: 63633109--63633169 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
63633099 CTTTTTATTA
*
63633109 TTATTATTATTTA-G
1 TTATTATTATTAATG
* *
63633123 TTCATTGTT-TTATTG
1 TT-ATTATTATTAATG
*
63633138 CTATTATTATTAATG
1 TTATTATTATTAATG
*
63633153 TTATTATTATTATTG
1 TTATTATTATTAATG
63633168 TT
1 TT
63633170 TCTATATTTC
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
14 9 0.25
15 27 0.75
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.64
Consensus pattern (15 bp):
TTATTATTATTAATG
Found at i:63639236 original size:21 final size:21
Alignment explanation
Indices: 63639210--63639249 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63639200 TATTTTTATT
63639210 TATTACCATTGT-TTTATTTTG
1 TATTACCATT-TATTTATTTTG
*
63639231 TATTACTATTTATTTATTT
1 TATTACCATTTATTTATTT
63639250 CATTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (21 bp):
TATTACCATTTATTTATTTTG
Found at i:63654896 original size:83 final size:83
Alignment explanation
Indices: 63654757--63654919 Score: 317
Period size: 83 Copynumber: 2.0 Consensus size: 83
63654747 CGGCTCTAAG
63654757 TTAGAAATTCAATATGACAAAACCCTAGAGAAATTCAGTTTGTTCTATCTCAGGCATATCACACA
1 TTAGAAATTCAATATGACAAAACCCTAGAGAAATTCAGTTTGTTCTATCTCAGGCATATCACACA
63654822 CGAAACTACCAAGTACCA
66 CGAAACTACCAAGTACCA
*
63654840 TTAGAAATTCAATATGACAAAACCCTAGGGAAATTCAGTTTGTTCTATCTCAGGCATATCACACA
1 TTAGAAATTCAATATGACAAAACCCTAGAGAAATTCAGTTTGTTCTATCTCAGGCATATCACACA
63654905 CGAAACTACCAAGTA
66 CGAAACTACCAAGTA
63654920 ACATCTGCTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26
Consensus pattern (83 bp):
TTAGAAATTCAATATGACAAAACCCTAGAGAAATTCAGTTTGTTCTATCTCAGGCATATCACACA
CGAAACTACCAAGTACCA
Found at i:63655256 original size:60 final size:62
Alignment explanation
Indices: 63655166--63655338 Score: 215
Period size: 60 Copynumber: 2.7 Consensus size: 62
63655156 ATAAGAAAAT
* * **
63655166 GAATGGCAGGATAGACGTACAAGTTCAAAAACAAAATTGCAACAAAA-AC-CCGACATAATAAA
1 GAATGGCAGG-TAAACATAC-AGTTCAAAAACAAAATTGCAACAAAATACTAAGACATAATAAA
*
63655228 GAATGGCAGGTAAACATACAGTTCAAAAACAAAATTGCAACAAAATTACTAAGAGATAATAAA
1 GAATGGCAGGTAAACATACAGTTCAAAAACAAAATTGCAACAAAA-TACTAAGACATAATAAA
* **
63655291 GAATGACAGGGTACGCATACAGTTCAAAAAGCAAAATTGCAACAAAAT
1 GAATGGCA-GGTAAACATACAGTTCAAAAA-CAAAATTGCAACAAAAT
63655339 TAAGACTACT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 26 0.27
61 7 0.07
62 12 0.12
63 17 0.17
64 20 0.20
65 16 0.16
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (62 bp):
GAATGGCAGGTAAACATACAGTTCAAAAACAAAATTGCAACAAAATACTAAGACATAATAAA
Found at i:63661295 original size:51 final size:51
Alignment explanation
Indices: 63661230--63661331 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
63661220 TAAAAACATC
63661230 CTTTCCTACTCATCATGTTGGTATGAATCTTTTTTTATGATAAAAAGGATG
1 CTTTCCTACTCATCATGTTGGTATGAATCTTTTTTTATGATAAAAAGGATG
63661281 CTTTCCTACTCATCATGTTGGTATGAATCTTTTTTTATGATAAAAAGGATG
1 CTTTCCTACTCATCATGTTGGTATGAATCTTTTTTTATGATAAAAAGGATG
63661332 TTTTTAAGCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (51 bp):
CTTTCCTACTCATCATGTTGGTATGAATCTTTTTTTATGATAAAAAGGATG
Found at i:63665127 original size:7 final size:7
Alignment explanation
Indices: 63665115--63665139 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63665105 TCTTCACAAG
63665115 TTTAAAA
1 TTTAAAA
63665122 TTTAAAA
1 TTTAAAA
63665129 TTTAAAA
1 TTTAAAA
63665136 TTTA
1 TTTA
63665140 TACTTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:63666918 original size:7 final size:7
Alignment explanation
Indices: 63666892--63666937 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
63666882 TTGCACTTTT
63666892 ATTTTAA
1 ATTTTAA
*
63666899 GTATTTAA
1 AT-TTTAA
63666907 ATTTTTAA
1 A-TTTTAA
*
63666915 TTTTTAA
1 ATTTTAA
63666922 ATTTTAA
1 ATTTTAA
63666929 ATTTTAA
1 ATTTTAA
63666936 AT
1 AT
63666938 CCAATTGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 22 0.67
8 10 0.30
9 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (7 bp):
ATTTTAA
Found at i:63671736 original size:18 final size:19
Alignment explanation
Indices: 63671698--63671739 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
63671688 AGGACTTTAG
*
63671698 GAGAGGGAAAATGAAAGAAA
1 GAGAGGGAAAA-GAAAAAAA
63671718 GAGAGGGAAAA-AAAAAAA
1 GAGAGGGAAAAGAAAAAAA
63671736 GAGA
1 GAGA
63671740 AACAGCGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.02
Consensus pattern (19 bp):
GAGAGGGAAAAGAAAAAAA
Found at i:63672178 original size:18 final size:19
Alignment explanation
Indices: 63672155--63672196 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
63672145 TGTAACTTTT
63672155 TAAAGTAAAAA-TTAAAAA
1 TAAAGTAAAAATTTAAAAA
63672173 TAAAGTAAAAATTTAAAAA
1 TAAAGTAAAAATTTAAAAA
*
63672192 AAAAG
1 TAAAG
63672197 AAATAATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (19 bp):
TAAAGTAAAAATTTAAAAA
Found at i:63672868 original size:14 final size:14
Alignment explanation
Indices: 63672835--63672877 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
63672825 TTAAAGAATA
*
63672835 TATTATATACATATT
1 TATTATTTA-ATATT
63672850 T-TTATTTAATATT
1 TATTATTTAATATT
63672863 TATTATTTAATATT
1 TATTATTTAATATT
63672877 T
1 T
63672878 GTACATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 6 0.23
14 19 0.73
15 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTATTTAATATT
Found at i:63675145 original size:40 final size:40
Alignment explanation
Indices: 63675078--63675154 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
63675068 AAGTCTGCTT
* * *
63675078 ATGTGTGAGCTTGCTTTTTGTTGTAATCTGTGATTTTCTC
1 ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTTCTC
*
63675118 ATGTGTGAGATTGGTTTGTGTTATAATCTGTGATTTT
1 ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTT
63675155 ATCTTGATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.16, C:0.08, G:0.25, T:0.52
Consensus pattern (40 bp):
ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTTCTC
Found at i:63676762 original size:17 final size:17
Alignment explanation
Indices: 63676740--63676774 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63676730 CTTGTTTTCA
*
63676740 AATATTTCTTATCATAT
1 AATATTTCATATCATAT
63676757 AATATTTCATATCATAT
1 AATATTTCATATCATAT
63676774 A
1 A
63676775 GAGTATTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (17 bp):
AATATTTCATATCATAT
Found at i:63686623 original size:21 final size:21
Alignment explanation
Indices: 63686597--63686637 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63686587 ATCTGCTCAA
* *
63686597 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
63686618 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
63686638 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:63690094 original size:121 final size:121
Alignment explanation
Indices: 63689880--63690121 Score: 466
Period size: 121 Copynumber: 2.0 Consensus size: 121
63689870 AACTTGAATC
63689880 AAGAGTCAACTAATAACATTGAGGCAAATGCCATGCTCAAAATTGGATCCCTAGCTAAGGAATGA
1 AAGAGTCAACTAATAACATTGAGGCAAATGCCATGCTCAAAATTGGATCCCTAGCTAAGGAATGA
*
63689945 GCAGCGGCATATGGTAGGAAATATGTTGAAAATGGCCAACCATGCTGCTGTTATGT
66 GCAGCGACATATGGTAGGAAATATGTTGAAAATGGCCAACCATGCTGCTGTTATGT
*
63690001 AAGAGTCAACTAATAACATTGAGGCAAATGCCATGCTCAAAATTGGATCCCTAGCTAAGGAATGG
1 AAGAGTCAACTAATAACATTGAGGCAAATGCCATGCTCAAAATTGGATCCCTAGCTAAGGAATGA
63690066 GCAGCGACATATGGTAGGAAATATGTTGAAAATGGCCAACCATGCTGCTGTTATGT
66 GCAGCGACATATGGTAGGAAATATGTTGAAAATGGCCAACCATGCTGCTGTTATGT
63690122 TTTTGTTAAA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 119 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (121 bp):
AAGAGTCAACTAATAACATTGAGGCAAATGCCATGCTCAAAATTGGATCCCTAGCTAAGGAATGA
GCAGCGACATATGGTAGGAAATATGTTGAAAATGGCCAACCATGCTGCTGTTATGT
Found at i:63691033 original size:9 final size:9
Alignment explanation
Indices: 63691019--63691052 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
63691009 ATGCAGAGAG
63691019 TGATACAGA
1 TGATACAGA
63691028 TGATACAGA
1 TGATACAGA
*
63691037 TGGTACAGA
1 TGATACAGA
63691046 TGATACA
1 TGATACA
63691053 TATGCTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (9 bp):
TGATACAGA
Found at i:63707866 original size:45 final size:45
Alignment explanation
Indices: 63707801--63707888 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
63707791 GCAGTAATAG
* *
63707801 TAACAGTATTCAACATACAAAGTG-CTAAATCTGTAACAGTAACGA
1 TAACAGTATTCAACACACAAAGTGTC-AAATCGGTAACAGTAACGA
** *
63707846 TAACAGTATTTGACACACAAAGTGTCGAATCGGTAACAGTAAC
1 TAACAGTATTCAACACACAAAGTGTCAAATCGGTAACAGTAAC
63707889 AGTAGTCGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (45 bp):
TAACAGTATTCAACACACAAAGTGTCAAATCGGTAACAGTAACGA
Found at i:63708138 original size:40 final size:41
Alignment explanation
Indices: 63708092--63708176 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 41
63708082 AATTTATTAC
* * *
63708092 TTCAGTAATTTCACAGTTCAATGCAGTACAC-ATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
* *
63708132 TTCAGTAACTTCACAATTCAATTCAGTACTCAAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
63708173 TTCA
1 TTCA
63708177 ATATTCCATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 27 0.69
41 12 0.31
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (41 bp):
TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
Found at i:63708157 original size:21 final size:21
Alignment explanation
Indices: 63708092--63708159 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
63708082 AATTTATTAC
* *
63708092 TTCAGTAATTTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
63708113 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
63708132 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
63708153 TTCAGTA
1 TTCAGTA
63708160 CTCAAAAACA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:63709016 original size:30 final size:29
Alignment explanation
Indices: 63708982--63709038 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
63708972 TTATCAAATA
63708982 AATAAA-ATCTTTTAATATAATAATTTAATT
1 AATAAATATCTTTTAAT-TAA-AATTTAATT
*
63709012 AATAAATATCTTTTACTTAAAATTTAA
1 AATAAATATCTTTTAATTAAAATTTAA
63709039 GAAAATATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 7 0.28
30 9 0.36
31 9 0.36
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (29 bp):
AATAAATATCTTTTAATTAAAATTTAATT
Found at i:63709162 original size:17 final size:16
Alignment explanation
Indices: 63709131--63709174 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
63709121 GATTTATTTA
63709131 ATAATATAATATCATT
1 ATAATATAATATCATT
*
63709147 ATAATTTAATTATCATT
1 ATAATATAA-TATCATT
*
63709164 AATTATATAAT
1 -ATAATATAAT
63709175 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 8 0.35
17 8 0.35
18 7 0.30
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATATAATATCATT
Found at i:63711615 original size:21 final size:21
Alignment explanation
Indices: 63711591--63711630 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
63711581 CTTTCTTTTT
*
63711591 CTTTCTTTTTAATTTTCTTGG
1 CTTTCTCTTTAATTTTCTTGG
* *
63711612 CTTTGTCTTTCATTTTCTT
1 CTTTCTCTTTAATTTTCTT
63711631 TTACTTAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.17, G:0.07, T:0.68
Consensus pattern (21 bp):
CTTTCTCTTTAATTTTCTTGG
Found at i:63722842 original size:23 final size:23
Alignment explanation
Indices: 63722812--63722857 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
63722802 TGTCTTCTAG
63722812 ACGGTAACTGGTGAATTTATTGA
1 ACGGTAACTGGTGAATTTATTGA
63722835 ACGGTAACTGGTGAATTTATTGA
1 ACGGTAACTGGTGAATTTATTGA
63722858 GGGCTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.35
Consensus pattern (23 bp):
ACGGTAACTGGTGAATTTATTGA
Found at i:63724525 original size:5 final size:5
Alignment explanation
Indices: 63724515--63724539 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63724505 GTTAAGAAAA
63724515 TAATT TAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT TAATT TAATT
63724540 GAATGAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TAATT
Found at i:63728666 original size:125 final size:125
Alignment explanation
Indices: 63728511--63728763 Score: 443
Period size: 125 Copynumber: 2.0 Consensus size: 125
63728501 GCTATTATGA
* * *
63728511 AGGGAATGAAGATGGCAGTGATCGGTGTAAGAAAAACAGATGAGGAAACAGAGAGTCAAGAGGGA
1 AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGAAAACAGAAAGTCAAGAGGGA
* *
63728576 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATTCAGAAAAGAG
66 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
* *
63728636 AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAGCAGATGAGAAAATAGAAAGTCAAGAGGGA
1 AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGAAAACAGAAAGTCAAGAGGGA
63728701 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
66 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
63728761 AGG
1 AGG
63728764 AATAAGTAAG
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (125 bp):
AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGAAAACAGAAAGTCAAGAGGGA
ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
Found at i:63730679 original size:141 final size:141
Alignment explanation
Indices: 63730510--63730792 Score: 514
Period size: 144 Copynumber: 2.0 Consensus size: 141
63730500 CATTGGAAGA
*
63730510 CCTTGACTTGGAATTAACACCCATCATCATCATCATG-GTCATTTGGAACAAGTTTTCTTGTTGG
1 CCTTGACTTGGAATTAACACCCATCATCATCATCATGAATCATTTGGAACAAGTTTTCTTGTTGG
63730574 TCAAAACTCCCTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGTCCACATCACCAGAAGGC
66 TCAAAACTCCCTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGTCCACATCACCAGAAGGC
63730639 TAATACATAGG
131 TAATACATAGG
63730650 CCTTGACTTGGAAATTAACACCCATCATCATCATCATGATCATCATTTGGAACAAGTTTTCTTGT
1 CCTTGACTTGG-AATTAACACCCATCATCATCATCATGA--ATCATTTGGAACAAGTTTTCTTGT
*
63730715 TGGTCAAAACTCCCTTTTAATAGTCTTTCATGCCTTCTTCTTCATCAAAGTCCACATCACCAGAA
63 TGGTCAAAACTCCCTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGTCCACATCACCAGAA
63730780 GGCTAATACATAG
128 GGCTAATACATAG
63730793 ACTTAAGGCA
Statistics
Matches: 137, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
140 11 0.08
141 26 0.19
144 100 0.73
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (141 bp):
CCTTGACTTGGAATTAACACCCATCATCATCATCATGAATCATTTGGAACAAGTTTTCTTGTTGG
TCAAAACTCCCTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGTCCACATCACCAGAAGGC
TAATACATAGG
Found at i:63749535 original size:444 final size:450
Alignment explanation
Indices: 63748572--63749591 Score: 1113
Period size: 444 Copynumber: 2.3 Consensus size: 450
63748562 AGAACCTTAC
* * * * * *
63748572 TAATTTAAGGGAAATTGACGTTTCATATTGCAAGAATTTAAGGAAGATGCATAATCTTTCAGGAG
1 TAATTTAAGGAAAATTTACGTTTCAGAATGCAAGAATTTAAGGAAGATACATAATCTTTCAAGAG
* ** * *
63748637 CCATCAACCTTGAACTCCTTCGTTGCAT-TGGCTGTGAAAGTCTGGTTGAACTTTGGAATGAAGA
66 CCATCAACCTTGAATTCCTT-GTTGC-TCTAACTGTAAAAGTTTGGTTGAACTTTGGAATGAAGA
* * *
63748701 TGATCATATAGTATGTGTGCTTTCATACTTATTTCATTTAAGAATATATATATTTTTAATTTAAT
129 TGATCATATAGTATGCGT-CTTTCATACTTATTTCATTTAAGAATATATAGATTTATAATTTAAT
*
63748766 GTATCAAATAATCATATGTTATGTTAACATCTTAATTAAAGTTTTTAAAAAAGAAATATGAAAGA
193 GTATCAAATAATCATATG-TA--TTAACATCTTAATTAAAGTTTTTAAAAAAGAAATATAAAAGA
* * * * *
63748831 TTTTATTTTATTTTATATAAATTAGTGGCATCATTTGATCTATTAATTGTGGGTTAATTTTCACA
255 ATTTA-TTTATTTTAGAT-AA-TAGTGACATCATTTGATCTATTAACTGTGGGTGAATTTTCACA
* ** *
63748896 CCCAATACATCAAATATGAATTTCTATTTTTCTTAGTATTATAATTATTTATTTCCTTTTTTATT
317 CCCAATACATCAAATATAAATTTCTATTTTTCTTAGTATTATAATTATTTATTTCCTTTTACATA
* * *
63748961 TTTTACTACTTAAAGTAAGTAGTTGATGCTTAAAAGCAATACAAATGTTGTTTCTATACAGGAGC
382 TTTTACTACTTAAAGTAAGTAGTTGATGCTTAAAAGCAAAACAAATATTGTTTCTATACAGGACC
63749026 TTGT
447 TTGT
* * * **
63749030 TAATTTAAGGGAAATTTACGTTTCAGAATGCAAAAATATAAGGAAGATATGTAATCTTTCAAGAG
1 TAATTTAAGGAAAATTTACGTTTCAGAATGCAAGAATTTAAGGAAGATACATAATCTTTCAAGAG
*
63749095 CCATCAACCTTGAATTCCTTGATTGCTCTTACTGTAAAAGTTTGGTTGAACTTTGGAATGAAGAT
66 CCATCAACCTTGAATTCCTTG-TTGCTCTAACTGTAAAAGTTTGGTTGAACTTTGGAATGAAGAT
* * * * *
63749160 GATCGTATGGTATGCGT-TTTTATACTCTCACTTT-TTTTGAA-AA-A-AT-GATTTATAATTTG
130 GATCATATAGTATGCGTCTTTCATACT-T-A-TTTCATTT-AAGAATATATAGATTTATAATTTA
* * * * * *
63749219 GTGTATCAAATATTCATATG-A-TAACATTTTATTTAAAGGTTTTT-AAAAATATATATAAAAGA
191 ATGTATCAAATAATCATATGTATTAACATCTTAATTAAA-GTTTTTAAAAAAGAAATATAAAAGA
* * * * *
63749281 ATTTA-TTATGTTTAGAT-A-AGTGACATCGTTTGATTTATTAGCTGTGGGTGAATTTTCACGCT
255 ATTTATTTAT-TTTAGATAATAGTGACATCATTTGATCTATTAACTGTGGGTGAATTTTCACACC
** * * *
63749343 GGATACATTAAATATAAATTTTTATTTTT-TATCGTATTATAATTATTTATTTCC-TTTACATAT
319 CAATACATCAAATATAAATTTCTATTTTTCT-TAGTATTATAATTATTTATTTCCTTTTACATAT
* * * * * *
63749406 TTTACT-GTCTAAAGTAAGTGGTTGAAT-CTTAAAAGTAAAACAATTATTTTTTCTGTACAGGAC
383 TTTACTACT-TAAAGTAAGTAGTTG-ATGCTTAAAAGCAAAACAAATATTGTTTCTATACAGGAC
63749469 CTTGT
446 CTTGT
* * ** ** * *
63749474 TCATTTAAGGAAAATTTAC-TTTGATGGGTGCGTGAATTTAAGGAAGATACCTAACCTTTCAAGA
1 TAATTTAAGGAAAATTTACGTTTCA-GAATGCAAGAATTTAAGGAAGATACATAATCTTTCAAGA
63749538 GCCATCAACCTTGAATTCCTTGGTTGCTCTAACTGTAAAAGTTTGGTTGAACTT
65 GCCATCAACCTTGAATTCCTT-GTTGCTCTAACTGTAAAAGTTTGGTTGAACTT
63749592 CCTTGCCTCA
Statistics
Matches: 479, Mismatches: 70, Indels: 40
0.81 0.12 0.07
Matches are distributed among these distances:
443 5 0.01
444 159 0.33
445 85 0.18
447 1 0.00
448 4 0.01
449 6 0.01
450 33 0.07
451 6 0.01
453 1 0.00
455 28 0.06
456 10 0.02
457 4 0.01
458 132 0.28
459 5 0.01
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (450 bp):
TAATTTAAGGAAAATTTACGTTTCAGAATGCAAGAATTTAAGGAAGATACATAATCTTTCAAGAG
CCATCAACCTTGAATTCCTTGTTGCTCTAACTGTAAAAGTTTGGTTGAACTTTGGAATGAAGATG
ATCATATAGTATGCGTCTTTCATACTTATTTCATTTAAGAATATATAGATTTATAATTTAATGTA
TCAAATAATCATATGTATTAACATCTTAATTAAAGTTTTTAAAAAAGAAATATAAAAGAATTTAT
TTATTTTAGATAATAGTGACATCATTTGATCTATTAACTGTGGGTGAATTTTCACACCCAATACA
TCAAATATAAATTTCTATTTTTCTTAGTATTATAATTATTTATTTCCTTTTACATATTTTACTAC
TTAAAGTAAGTAGTTGATGCTTAAAAGCAAAACAAATATTGTTTCTATACAGGACCTTGT
Found at i:63750184 original size:189 final size:189
Alignment explanation
Indices: 63749852--63750360 Score: 820
Period size: 189 Copynumber: 2.7 Consensus size: 189
63749842 GTGGTTGCCC
* *
63749852 AATTGAAGAAGTGTCGTTGCCTTTCGACCCCCTATGTAATCTTCAGCACTTAAAAATGAGTGGCT
1 AATTGAAGAAGTGTCGTTGCCTTTCGACTCCCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
* * * ** *
63749917 CAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCGCATGCTGAATCTTAGTGGATGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCGTAAACTGAATCTTAGTGGTTGCCCA
* *
63749982 ATGGTCAAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
131 ATAGTCAAATTTCCAGAAATCCCAAGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
* ** * *
63750041 AATTGAAGAAGTATCGTTGCCTTTCGACTCTTTATGTAATCTTCAGAACTTAAATATGAGTAGCT
1 AATTGAAGAAGTGTCGTTGCCTTTCGACTCCCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
63750106 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCGTAAACTGAATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCGTAAACTGAATCTTAGTGGTTGCCCA
* * *
63750171 CTAGTCGAATTTCCAGAAATCCCAAGAAGCTTAATAGAATTAAACTTATCTGGCACTCA
131 ATAGTCAAATTTCCAGAAATCCCAAGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
63750230 AATTGAAGAAGTGTCGTTGCCTTTCGACTCCCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
1 AATTGAAGAAGTGTCGTTGCCTTTCGACTCCCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
* * * *
63750295 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCATTATCTGGATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCGTAAACTGAATCTTAGTGGTTGCCCA
63750360 A
131 A
63750361 AGGTCGAATT
Statistics
Matches: 292, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
189 292 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (189 bp):
AATTGAAGAAGTGTCGTTGCCTTTCGACTCCCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCGTAAACTGAATCTTAGTGGTTGCCCA
ATAGTCAAATTTCCAGAAATCCCAAGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
Found at i:63757227 original size:26 final size:26
Alignment explanation
Indices: 63757190--63757239 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
63757180 CTAACTTGTA
63757190 CAATTTGCTGCTGCTGGTCCTTTGAC
1 CAATTTGCTGCTGCTGGTCCTTTGAC
* * *
63757216 CAATTTGTTGCTGTTGGTTCTTTG
1 CAATTTGCTGCTGCTGGTCCTTTG
63757240 TTGCAATGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (26 bp):
CAATTTGCTGCTGCTGGTCCTTTGAC
Found at i:63759214 original size:9 final size:9
Alignment explanation
Indices: 63759196--63759253 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
63759186 TTTGGTTAAA
63759196 AATTAACCG
1 AATTAACCG
*
63759205 AATTATCCG
1 AATTAACCG
*
63759214 AATTAACCA
1 AATTAACCG
63759223 AATTAACCG
1 AATTAACCG
63759232 AATTAACCG
1 AATTAACCG
*
63759241 AATTACCCG
1 AATTAACCG
63759250 AATT
1 AATT
63759254 GAATTACTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:63759320 original size:17 final size:17
Alignment explanation
Indices: 63759261--63759323 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
63759251 ATTGAATTAC
*
63759261 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
** * *
63759278 TACATAAGTCTTTGAACCAC
1 TACATAA---TTAAAAACAT
63759298 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
63759315 TACATAATT
1 TACATAATT
63759324 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 22 0.65
20 12 0.35
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:63759503 original size:38 final size:39
Alignment explanation
Indices: 63759459--63759575 Score: 173
Period size: 39 Copynumber: 3.0 Consensus size: 39
63759449 ACTTAAGAGT
*
63759459 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
* *
63759497 TAGACTTTAGTTTTAGTTTTATTGGATTAGGTAATTTGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
* * *
63759536 TAGACTTTTGTTTTAGTTTTATTGAGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
63759575 T
1 T
63759576 TGGGTTGGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 26 0.37
39 44 0.63
ACGTcount: A:0.20, C:0.03, G:0.26, T:0.52
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
Found at i:63765047 original size:42 final size:42
Alignment explanation
Indices: 63764946--63765148 Score: 232
Period size: 42 Copynumber: 4.9 Consensus size: 42
63764936 TTAAAAAAAT
* * *
63764946 AAACGCCGCTAAAGATCATGTTCTTTAGCGGTGGTTAGA-AA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
* ** *
63764987 AAACCCCGCTAAAG-TCATGTTCTTTAATGGCGTTTAAAGAA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
* *
63765028 AAACGCCGCTAAATATCATGTTCTTTAGCGGCGCTTGAAG-A
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
** * *
63765069 AAACTGCCGCTAAAGGGCATGTTCTTTAGGCGGCGCCTGAAGAA
1 AAAC-GCCGCTAAAGATCATGTTCTTTA-GCGGCGCTTAAAGAA
* *
63765113 AAACGTCGCTAAAGAACATGTTCTTTAGCGGCGCTT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
63765149 TATACACAAA
Statistics
Matches: 137, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
40 19 0.14
41 32 0.23
42 49 0.36
43 32 0.23
44 5 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (42 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
Found at i:63765133 original size:85 final size:82
Alignment explanation
Indices: 63764946--63765148 Score: 255
Period size: 85 Copynumber: 2.4 Consensus size: 82
63764936 TTAAAAAAAT
* * *
63764946 AAACGCCGCTAAAGATCATGTTCTTTAGCGGTGGTTAGAAAAAACCCCGCTAAAGTCATGTTCTT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAACCCCGCTAAAGGCATGTTCTT
* **
63765011 TAATGGCGTTTAAAGAA
66 TAACGGCGCCTAAAGAA
* *
63765028 AAACGCCGCTAAATATCATGTTCTTTAGCGGCGCTT-GAAGAAAACTGCCGCTAAAGGGCATGTT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA-AAAAC-CCCGCTAAA-GGCATGTT
* *
63765092 CTTTAGGCGGCGCCTGAAGAA
63 CTTTA-ACGGCGCCTAAAGAA
* *
63765113 AAACGTCGCTAAAGAACATGTTCTTTAGCGGCGCTT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
63765149 TATACACAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
81 3 0.03
82 38 0.37
83 8 0.08
84 12 0.12
85 43 0.41
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (82 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAACCCCGCTAAAGGCATGTTCTT
TAACGGCGCCTAAAGAA
Found at i:63771070 original size:9 final size:9
Alignment explanation
Indices: 63771056--63771552 Score: 185
Period size: 9 Copynumber: 58.1 Consensus size: 9
63771046 TTTTTATGTA
63771056 TTATGTAAG
1 TTATGTAAG
63771065 TTATGTAAG
1 TTATGTAAG
* *
63771074 CTATAT-A-
1 TTATGTAAG
63771081 TTATGT-A-
1 TTATGTAAG
63771088 TTATGTAAG
1 TTATGTAAG
*
63771097 -AACT-TAAG
1 TTA-TGTAAG
* *
63771105 TAATTGT-GG
1 TTA-TGTAAG
63771114 TTATGTAAG
1 TTATGTAAG
*
63771123 TAATGT-A-
1 TTATGTAAG
63771130 TTATGTAAG
1 TTATGTAAG
*
63771139 TTGTGT-A-
1 TTATGTAAG
63771146 -TATGTAAG
1 TTATGTAAG
*
63771154 TTAAG-AAGG
1 TTATGTAA-G
63771163 TTATGT-A-
1 TTATGTAAG
63771170 TTATGTAAG
1 TTATGTAAG
*
63771179 TTATTTAAG
1 TTATGTAAG
* *
63771188 TAATGT-TG
1 TTATGTAAG
63771196 TATTATGTAAG
1 --TTATGTAAG
*
63771207 TTATTTAAG
1 TTATGTAAG
63771216 TTATGTAAG
1 TTATGTAAG
* *
63771225 TTAT-TTAT
1 TTATGTAAG
*
63771233 TTATAT-AG
1 TTATGTAAG
63771241 TTATGTAAG
1 TTATGTAAG
63771250 TTATGTAAG
1 TTATGTAAG
*
63771259 TTAT-TTAG
1 TTATGTAAG
63771267 TTTTATGTAAG
1 --TTATGTAAG
63771278 TTATGTAAG
1 TTATGTAAG
*
63771287 TTATGTAGG
1 TTATGTAAG
63771296 TTATGT-A-
1 TTATGTAAG
*
63771303 TTATGTTAG
1 TTATGTAAG
*
63771312 TTAT-TATG
1 TTATGTAAG
*
63771320 TTATTATATAAG
1 ---TTATGTAAG
*
63771332 TTATGCAAG
1 TTATGTAAG
* *
63771341 TTCTAT-A-
1 TTATGTAAG
*
63771348 -TATGTTTA-
1 TTATG-TAAG
*
63771356 TATATTGTATG
1 T-TA-TGTAAG
*
63771367 TTA-GTTA-
1 TTATGTAAG
*
63771374 TTATGTTA-
1 TTATGTAAG
*
63771382 TTATATAAG
1 TTATGTAAG
*
63771391 TTATGCAAG
1 TTATGTAAG
*
63771400 TTATATAAG
1 TTATGTAAG
*
63771409 TTATTTAAG
1 TTATGTAAG
* *
63771418 TTGTGTAAA
1 TTATGTAAG
63771427 TGT-TGT-A-
1 T-TATGTAAG
63771434 TTATGTAAG
1 TTATGTAAG
63771443 TTATGT-A-
1 TTATGTAAG
63771450 TTATGTAAG
1 TTATGTAAG
* * *
63771459 ATACGTACG
1 TTATGTAAG
*
63771468 -T-TGT-AT
1 TTATGTAAG
*
63771474 TTATGTAAT
1 TTATGTAAG
*
63771483 TTCTGT-A-
1 TTATGTAAG
*
63771490 TTATGTATG
1 TTATGTAAG
63771499 TTATGTAAG
1 TTATGTAAG
*
63771508 TTGTGT-AG
1 TTATGTAAG
*
63771516 -AATGTAAG
1 TTATGTAAG
*
63771524 CTATGTAAG
1 TTATGTAAG
63771533 TTATGTAAG
1 TTATGTAAG
63771542 TTAATGTAAG
1 TT-ATGTAAG
63771552 T
1 T
63771553 GGTTATTTAG
Statistics
Matches: 367, Mismatches: 70, Indels: 101
0.68 0.13 0.19
Matches are distributed among these distances:
6 7 0.02
7 54 0.15
8 62 0.17
9 206 0.56
10 24 0.07
11 11 0.03
12 3 0.01
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:63771151 original size:15 final size:16
Alignment explanation
Indices: 63771114--63771315 Score: 117
Period size: 16 Copynumber: 12.8 Consensus size: 16
63771104 GTAATTGTGG
*
63771114 TTATGTAAGTAATGTA
1 TTATGTAAGTTATGTA
*
63771130 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
63771146 -TATGTAAGTTAAG-A
1 TTATGTAAGTTATGTA
63771160 --A-G---GTTATGTA
1 TTATGTAAGTTATGTA
63771170 TTATGTAAGTTA--T-
1 TTATGTAAGTTATGTA
*
63771183 TTAAGTAA-TGT-TGTA
1 TTATGTAAGT-TATGTA
*
63771198 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
63771215 GTTATGTAAGTTATTTA
1 -TTATGTAAGTTATGTA
*
63771232 TT-TATATAGTTATGTAA
1 TTATGTA-AGTTATGT-A
*
63771249 GTTATGTAAGTTATTTAGTT
1 -TTATGTAAGTTA--T-GTA
63771269 TTATGTAAGTTATGTAA
1 TTATGTAAGTTATGT-A
*
63771286 GTTATGTAGGTTATGTA
1 -TTATGTAAGTTATGTA
*
63771303 TTATGTTAGTTAT
1 TTATGTAAGTTAT
63771316 TATGTTATTA
Statistics
Matches: 146, Mismatches: 16, Indels: 48
0.70 0.08 0.23
Matches are distributed among these distances:
9 5 0.03
10 1 0.01
12 3 0.02
13 10 0.07
14 3 0.02
15 22 0.15
16 43 0.29
17 5 0.03
18 36 0.25
19 15 0.10
20 1 0.01
21 2 0.01
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:63771206 original size:28 final size:28
Alignment explanation
Indices: 63771166--63771221 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63771156 AAGAAGGTTA
63771166 TGTATTATGTAAGTTATTTAAGTAATGT
1 TGTATTATGTAAGTTATTTAAGTAATGT
*
63771194 TGTATTATGTAAGTTATTTAAGTTATGT
1 TGTATTATGTAAGTTATTTAAGTAATGT
63771222 AAGTTATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (28 bp):
TGTATTATGTAAGTTATTTAAGTAATGT
Found at i:63771278 original size:62 final size:61
Alignment explanation
Indices: 63771207--63771324 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
63771197 ATTATGTAAG
* * *
63771207 TTATTTAAGTTATGTAAGTTATTTA-TTTATATAGTTATGTAAGTTATGTAAGTTATTTAGTT
1 TTATGTAAGTTATGTAAGTTATGTAGGTTATATA-TTATGTAAGTTAT-TAAGTTATTTAGTT
* * *
63771269 TTATGTAAGTTATGTAAGTTATGTAGGTTATGTATTATGTTAGTTATTATGTTATT
1 TTATGTAAGTTATGTAAGTTATGTAGGTTATATATTATGTAAGTTATTAAGTTATT
63771325 ATATAAGTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
61 8 0.16
62 35 0.71
63 6 0.12
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (61 bp):
TTATGTAAGTTATGTAAGTTATGTAGGTTATATATTATGTAAGTTATTAAGTTATTTAGTT
Found at i:63771313 original size:71 final size:71
Alignment explanation
Indices: 63771113--63771323 Score: 217
Period size: 71 Copynumber: 3.1 Consensus size: 71
63771103 AGTAATTGTG
* * * *
63771113 GTTATGTAAGTAA---TGTATTATGTAAGTTGTGT-A--TATGTAAGTTAAGAAGGTTATGTA-T
1 GTTATGTAAGTAATGTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTA-TTTATGTAGT
63771171 TATGTAA
65 TATGTAA
* * * *
63771178 GTTATTTAAGTAATGTTGTATTATGTAAGTTATTTAAGTTATGTAAGTTATTTATTTATATAGTT
1 GTTATGTAAGTAATGTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTATTTATGTAGTT
63771243 ATGTAA
66 ATGTAA
* * *
63771249 GTTATGTAAGTTAT-TTAGTTTTATGTAAGTTATGTAAGTTATGTAGGTTATGTA-TTATGTTAG
1 GTTATGTAAGTAATGTT-GTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTATTTATG-TAG
*
63771312 TTAT-TAT
64 TTATGTAA
63771319 GTTAT
1 GTTAT
63771324 TATATAAGTT
Statistics
Matches: 121, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
65 12 0.10
68 17 0.14
69 1 0.01
70 19 0.16
71 72 0.60
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (71 bp):
GTTATGTAAGTAATGTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTATTTATGTAGTT
ATGTAA
Found at i:63771314 original size:34 final size:34
Alignment explanation
Indices: 63771113--63771549 Score: 186
Period size: 34 Copynumber: 12.5 Consensus size: 34
63771103 AGTAATTGTG
* *
63771113 GTTATGTAAGTAATGTATTATGTAAGTTGTGT-A
1 GTTATGTAAGTTATGTATTATGTAAGTTATGTAA
* *
63771146 --TATGTAAGTTAAGAAGGTTATGT-A-TTATGTAA
1 GTTATGTAAGTTATGTA--TTATGTAAGTTATGTAA
* * *
63771178 GTTATTTAAGTAATGTTGTATTATGTAAGTTATTTAA
1 GTTATGTAAGT--T-ATGTATTATGTAAGTTATGTAA
* *
63771215 GTTATGTAAGTTATTTATT-TATATAGTTATGTAA
1 GTTATGTAAGTTATGTATTATGTA-AGTTATGTAA
*
63771249 GTTATGTAAGTTATTTAGTTTTATGTAAGTTATGTAA
1 GTTATGTAAGTTA--T-GTATTATGTAAGTTATGTAA
* * *
63771286 GTTATGTAGGTTATGTATTATGTTAGTTAT-TAT
1 GTTATGTAAGTTATGTATTATGTAAGTTATGTAA
* * * * *
63771319 GTTATTATATAAGTTATGCAAGTTCTATATATGTT-TATATA
1 G---TTATGTAAGTTATG-TA--T-TATGTAAGTTATGTA-A
* * * *
63771360 TTGTATGTTAGTTATTATGTTATTATATAAGTTATGCAA
1 GT-TATGTAAG-T--TATG-TATTATGTAAGTTATGTAA
* * * *
63771399 GTTATATAAGTTATTTAAGTTGTGTAAATGT-TGT-A
1 GTTATGTAAGTTATGT-A-TTATGTAAGT-TATGTAA
* * *
63771434 -TTATGTAAGTTATGTATTATGTAAGATACGTAC
1 GTTATGTAAGTTATGTATTATGTAAGTTATGTAA
* * *
63771467 G-T-TGT-ATTTATGTAATTTCTGT-A-TTATGTAT
1 GTTATGTAAGTTATGT-A-TTATGTAAGTTATGTAA
* ** *
63771498 GTTATGTAAGTTGTGTAGAATGTAAGCTATGTAA
1 GTTATGTAAGTTATGTATTATGTAAGTTATGTAA
63771532 GTTATGTAAGTTAATGTA
1 GTTATGTAAGTT-ATGTA
63771550 AGTGGTTATT
Statistics
Matches: 297, Mismatches: 64, Indels: 84
0.67 0.14 0.19
Matches are distributed among these distances:
31 31 0.10
32 20 0.07
33 24 0.08
34 87 0.29
35 17 0.06
36 24 0.08
37 47 0.16
38 10 0.03
39 19 0.06
40 13 0.04
42 5 0.02
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.49
Consensus pattern (34 bp):
GTTATGTAAGTTATGTATTATGTAAGTTATGTAA
Found at i:63771333 original size:20 final size:20
Alignment explanation
Indices: 63771296--63771394 Score: 62
Period size: 20 Copynumber: 5.0 Consensus size: 20
63771286 GTTATGTAGG
* *
63771296 TTATG-TATTATGTTAGTTA
1 TTATGTTATTATATAAGTTA
63771315 TTATGTTATTATATAAGTTA
1 TTATGTTATTATATAAGTTA
* * * *
63771335 TGCAAGTT-CTATATATGTT-
1 T-TATGTTATTATATAAGTTA
* * * *
63771354 TATATATT-GTATGTTAGTTA
1 T-TATGTTATTATATAAGTTA
63771374 TTATGTTATTATATAAGTTA
1 TTATGTTATTATATAAGTTA
63771394 T
1 T
63771395 GCAAGTTATA
Statistics
Matches: 58, Mismatches: 18, Indels: 7
0.70 0.22 0.08
Matches are distributed among these distances:
19 21 0.36
20 33 0.57
21 4 0.07
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.55
Consensus pattern (20 bp):
TTATGTTATTATATAAGTTA
Found at i:63771449 original size:16 final size:17
Alignment explanation
Indices: 63771382--63771549 Score: 75
Period size: 16 Copynumber: 9.9 Consensus size: 17
63771372 TATTATGTTA
* *
63771382 TTATATAAGTTATGCAAG
1 TTATGTAAGTTATG-TAG
* *
63771400 TTATATAAGTTATTTAAG
1 TTATGTAAGTTATGT-AG
* *
63771418 TTGTGTAAATGT-TGTA-
1 TTATGTAAGT-TATGTAG
63771434 TTATGTAAGTTATGTA-
1 TTATGTAAGTTATGTAG
* *
63771450 TTATGTAAGATACGTACG
1 TTATGTAAGTTATGTA-G
* *
63771468 -T-TGT-ATTTATGTAAT
1 TTATGTAAGTTATGT-AG
*
63771483 TTCTGT-A-TTATGTATG
1 TTATGTAAGTTATGTA-G
*
63771499 TTATGTAAGTTGTGTAG
1 TTATGTAAGTTATGTAG
* *
63771516 -AATGTAAGCTATGTAAG
1 TTATGTAAGTTATGT-AG
63771533 TTATGTAAGTTAATGTA
1 TTATGTAAGTT-ATGTA
63771550 AGTGGTTATT
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
15 7 0.06
16 53 0.46
17 10 0.09
18 39 0.34
19 5 0.04
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.46
Consensus pattern (17 bp):
TTATGTAAGTTATGTAG
Found at i:63771511 original size:40 final size:39
Alignment explanation
Indices: 63771428--63771511 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
63771418 TTGTGTAAAT
*
63771428 GTTGTATTATGTAAGTTATGTATTATGTAAGATACGTAC
1 GTTGTATTATGTAAGTTATGTATTATGTAAGATACGTAA
* * * * *
63771467 GTTGTATTTATGTAATTTCTGTATTATGTATGTTATGTAA
1 GTTGTA-TTATGTAAGTTATGTATTATGTAAGATACGTAA
63771507 GTTGT
1 GTTGT
63771512 GTAGAATGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 6 0.16
40 32 0.84
ACGTcount: A:0.26, C:0.04, G:0.20, T:0.50
Consensus pattern (39 bp):
GTTGTATTATGTAAGTTATGTATTATGTAAGATACGTAA
Found at i:63771514 original size:25 final size:25
Alignment explanation
Indices: 63771469--63771539 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 25
63771459 ATACGTACGT
* * **
63771469 TGTAT-TTATGTAATTTCTGTATTA
1 TGTATGTTATGTAAGTTATGTAGAA
*
63771493 TGTATGTTATGTAAGTTGTGTAGAA
1 TGTATGTTATGTAAGTTATGTAGAA
* *
63771518 TGTAAGCTATGTAAGTTATGTA
1 TGTATGTTATGTAAGTTATGTA
63771540 AGTTAATGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 5 0.13
25 34 0.87
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (25 bp):
TGTATGTTATGTAAGTTATGTAGAA
Found at i:63920346 original size:21 final size:21
Alignment explanation
Indices: 63920320--63920360 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63920310 ATCTGCTCAA
*
63920320 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
63920341 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
63920361 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:63928224 original size:26 final size:27
Alignment explanation
Indices: 63928182--63928246 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
63928172 GCCCGAATAT
63928182 AATAAATATTTTTATTTTTTA-TTTTAA
1 AATAAAT-TTTTTATTTTTTATTTTTAA
*
63928209 AATAATTTTTTTATTTTTTATTTTTAA
1 AATAAATTTTTTATTTTTTATTTTTAA
63928236 AATAAATTTTT
1 AATAAATTTTT
63928247 GGTGTTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 13 0.37
27 22 0.63
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
AATAAATTTTTTATTTTTTATTTTTAA
Found at i:63928254 original size:26 final size:27
Alignment explanation
Indices: 63928186--63928256 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 27
63928176 GAATATAATA
* *
63928186 AATATTTTTATTTTTTA-TTTTAAAAT
1 AATATTTTTAGTGTTTATTTTTAAAAT
* * *
63928212 AATTTTTTTATTTTTTATTTTTAAAAT
1 AATATTTTTAGTGTTTATTTTTAAAAT
*
63928239 AA-ATTTTTGGTGTTTATT
1 AATATTTTTAGTGTTTATT
63928257 AAAAAATGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 28 0.72
27 11 0.28
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (27 bp):
AATATTTTTAGTGTTTATTTTTAAAAT
Found at i:63932479 original size:29 final size:29
Alignment explanation
Indices: 63932442--63932526 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
63932432 GCATCAATAA
63932442 AAAAAATATATGTAGTGTATTTTAAAAAT
1 AAAAAATATATGTAGTGTATTTTAAAAAT
63932471 AAAAAATATATGTAGTGTA-TTT---AA-
1 AAAAAATATATGTAGTGTATTTTAAAAAT
63932495 AAAAAATATA---A-TGTATTTTAAAAAT
1 AAAAAATATATGTAGTGTATTTTAAAAAT
63932520 AAAAAAT
1 AAAAAAT
63932527 TAATCTGATG
Statistics
Matches: 51, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
20 4 0.08
21 4 0.08
24 12 0.24
25 9 0.18
28 3 0.06
29 19 0.37
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.35
Consensus pattern (29 bp):
AAAAAATATATGTAGTGTATTTTAAAAAT
Found at i:63932495 original size:22 final size:21
Alignment explanation
Indices: 63932470--63932521 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
63932460 ATTTTAAAAA
* *
63932470 TAAAAAATATATGTAGTGTATT
1 TAAAAAATA-ATATAATGTATT
63932492 TAAAAAA-AATATAATGTATT
1 TAAAAAATAATATAATGTATT
*
63932512 TTAAAAATAA
1 TAAAAAATAA
63932522 AAAATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.37
Consensus pattern (21 bp):
TAAAAAATAATATAATGTATT
Found at i:63932530 original size:24 final size:23
Alignment explanation
Indices: 63932457--63932526 Score: 79
Period size: 26 Copynumber: 2.9 Consensus size: 23
63932447 ATATATGTAG
63932457 TGTATTTTAAAAATAAAAAATATA
1 TGTATTTTAAAAATAAAAAATA-A
* *
63932481 TGTAGTGTATTTAAAA-AAAATATAA
1 TGTA-T-T-TTAAAAATAAAAAATAA
63932506 TGTATTTTAAAAATAAAAAAT
1 TGTATTTTAAAAATAAAAAAT
63932527 TAATCTGATG
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
22 6 0.16
23 7 0.18
24 5 0.13
25 6 0.16
26 8 0.21
27 6 0.16
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (23 bp):
TGTATTTTAAAAATAAAAAATAA
Found at i:63937833 original size:21 final size:21
Alignment explanation
Indices: 63937801--63937841 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
63937791 GAACATTTGG
63937801 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
63937822 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
63937842 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:63957015 original size:125 final size:125
Alignment explanation
Indices: 63956862--63957101 Score: 428
Period size: 125 Copynumber: 1.9 Consensus size: 125
63956852 GCTACTATGA
*
63956862 AGGGAATGAAGATGGCAGTGATAGGTGTAAGAAAAACAGATGAGGAAACAGAGAGTCAAGAGGGA
1 AGGGAATGAAGATGGCAGTGATAGGTGTAAGAAAAACAGATGAGGAAACAGAGAGTCAAGAGGAA
*
63956927 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
66 ATTAATGGCAGATCTTTGGAAAGGCCATTACGCTTGGAATTTTAGCTATACAAAAAAGAG
* *
63956987 AGGGAATGAAGATGGCAGTGATCA-GTGTAGGAAAAGCAGATGAGGAAACAGAGAGTCAAGAGGA
1 AGGGAATGAAGATGGCAGTGAT-AGGTGTAAGAAAAACAGATGAGGAAACAGAGAGTCAAGAGGA
63957051 AATTAATGGCAGATCTTTGGAAAGGCCATTACGCTTGGAATTTTAGCTATA
65 AATTAATGGCAGATCTTTGGAAAGGCCATTACGCTTGGAATTTTAGCTATA
63957102 GGAACAAGTA
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
125 109 0.99
126 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.30, T:0.21
Consensus pattern (125 bp):
AGGGAATGAAGATGGCAGTGATAGGTGTAAGAAAAACAGATGAGGAAACAGAGAGTCAAGAGGAA
ATTAATGGCAGATCTTTGGAAAGGCCATTACGCTTGGAATTTTAGCTATACAAAAAAGAG
Found at i:63958808 original size:15 final size:15
Alignment explanation
Indices: 63958768--63958812 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
63958758 TGGTCTTTAT
*
63958768 TTAA-TTTTTT-AGA
1 TTAATTTTTTTAAAA
63958781 TTAATTTTATTTAAAA
1 TTAATTTT-TTTAAAA
63958797 TTAATTTTTTTAAAA
1 TTAATTTTTTTAAAA
63958812 T
1 T
63958813 AATGTATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 4 0.14
14 3 0.11
15 11 0.39
16 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
TTAATTTTTTTAAAA
Found at i:63960478 original size:34 final size:34
Alignment explanation
Indices: 63960440--63960507 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
63960430 TAAGGAAAAA
63960440 ATGGAGAGTATTTGATGAACAAAAATGATTCATT
1 ATGGAGAGTATTTGATGAACAAAAATGATTCATT
63960474 ATGGAGAGTATTTGATGAACAAAAATGATTCATT
1 ATGGAGAGTATTTGATGAACAAAAATGATTCATT
63960508 CATTTTTTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (34 bp):
ATGGAGAGTATTTGATGAACAAAAATGATTCATT
Found at i:63967487 original size:189 final size:188
Alignment explanation
Indices: 63967192--63967844 Score: 731
Period size: 189 Copynumber: 3.5 Consensus size: 188
63967182 GTGAATTGGT
* *
63967192 TCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTAT
1 TCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCCAAGAAGCTTAACAAAATTAAA-TTAT
* * * *
63967257 CTAGAACTCAAATTGAAGAAGTATCGTTGCCTTTCGACTCTCTATGTAATCTTCAGGACTTAAAT
65 CTAGCACTCAAATTGAAGAAGTGTCATTACCTTTCGACTCTCTATGTAATCTTCAGGACTTAAAT
*
63967322 ATGAGCGGCTCAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCATAAACTGAA
130 ATGAGAGGCTCAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCATAAACTGAA
* * *
63967381 TCTTAGTGATTGCCCGATGATCAAATTTCCAGAAATCCCAAGAAGCTTAATAGAATTAAATTTAT
1 TCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCCAAGAAGCTTAACAAAATTAAA-TTAT
* * *
63967446 CTGGCACTCAAATTGAAGAAGTGTCCTTACCTTTTGACTCTCTATGTAATCTTCA-GATCTTAAA
65 CTAGCACTCAAATTGAAGAAGTGTCATTACCTTTCGACTCTCTATGTAATCTTCAGGA-CTTAAA
* * * * * * *
63967510 TATGAGTGGCTCAGCAGTCAAAAATATATCGATCAGGTTGGAATCCCTTCGTAAACTGGA
129 TATGAGAGGCTCAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCATAAACTGAA
* * * * * *
63967570 TCTTAGTGGTTGCCCAATGGTCCAATTTCCA-AACGTCCCAAGAAGCTTAACACATTTAGAATTA
1 TCTTAGTGATTGCCCAATGATCAAATTTCCAGAA-ATCCCAAGAAGCTTAACAAAATTA-AATTA
* * * * *
63967634 TCTCGCACTCAAATTGAAGAAGTGTCATTCCCTTTCGACCCTTTATGTAATC-TCGAGTACTTAA
64 TCTAGCACTCAAATTGAAGAAGTGTCATTACCTTTCGACTCTCTATGTAATCTTC-AGGACTTAA
* * * ** *
63967698 A-AGTGAGAGGCTCAACGGTCAAAAATGTATCAATCAAGTTGGAATCCATTCGTCGACTGGA
128 ATA-TGAGAGGCTCAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCATAAACTGAA
* * * * ** * * * ****
63967759 TATTAGTGGTTGCCCAATGGTCGAATTTTTA-AAAGTCCCGAGAGGCTTAATATGGCTAAAGTTA
1 TCTTAGTGATTGCCCAATGATCAAATTTCCAGAAA-TCCCAAGAAGCTTAACAAAATTAAA-TTA
*
63967823 TCTAACACTCAAATTGAAGAAG
64 TCTAGCACTCAAATTGAAGAAG
63967845 CGGCCATGTC
Statistics
Matches: 399, Mismatches: 57, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
188 9 0.02
189 387 0.97
190 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (188 bp):
TCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCCAAGAAGCTTAACAAAATTAAATTATC
TAGCACTCAAATTGAAGAAGTGTCATTACCTTTCGACTCTCTATGTAATCTTCAGGACTTAAATA
TGAGAGGCTCAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCATAAACTGAA
Found at i:63967875 original size:378 final size:378
Alignment explanation
Indices: 63967192--63967876 Score: 851
Period size: 378 Copynumber: 1.8 Consensus size: 378
63967182 GTGAATTGGT
63967192 TCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTAT
1 TCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTAT
* * *
63967257 CTAGAACTCAAATTGAAGAAGTATCGTTGCCTTTCGACTCTCTATGTAATCTTCAGGACTTAAAT
66 CTAGAACTCAAATTGAAGAAGTATCATTCCCTTTCGACCCTCTATGTAATCTTCAGGACTTAAAT
* * * *
63967322 ATGAGCGGCTCAGCGGTCAAAAATGTATCAATCAAGTTGGAATCCCTTCATAAACTGAATCTTAG
131 ATGAGAGGCTCAACGGTCAAAAATGTATCAATCAAGTTGGAATCCATTCATAAACTGAATATTAG
* * * **
63967387 TGATTGCCCGATGATCAAATTTCCAGAAATCCCAAGAAGCTTAATAGAATTAAATTTATCTGGCA
196 TGATTGCCCAATGATCAAATTTCCAGAAATCCCAAGAAGCTTAATAGAACTAAAGTTATCTAACA
* * * * * * *
63967452 CTCAAATTGAAGAAGTGTCCTTACCTTTTGACTCTCTATGTAATCTTCAGATCTTAAATATGAGT
261 CTCAAATTGAAGAAGCGGCCATACCTATAGACACTCTAAGTAATCTTCAGATCTTAAATATGAGT
63967517 GGCTCAGCAGTCAAAAATATATCGATCAGGTTGGAATCCCTTCGTAAACTGGA
326 GGCTCAGCAGTCAAAAATATATCGATCAGGTTGGAATCCCTTCGTAAACTGGA
** * * * * * *
63967570 TCTTAGTGGTTGCCCAATGGTCCAATTTCCA-AACGTCCCAAGAAGCTTAACACATTTAGAA-TT
1 TCTTAGTAATTGCCCAATGATCAAATTTCCAGAA-ATCCCAAAAAGCTTAACAAAATTA-AACTT
* * * * *
63967633 ATCTCGCACTCAAATTGAAGAAGTGTCATTCCCTTTCGACCCTTTATGTAATC-TCGAGTACTTA
64 ATCTAGAACTCAAATTGAAGAAGTATCATTCCCTTTCGACCCTCTATGTAATCTTC-AGGACTTA
* ** *
63967697 AA-AGTGAGAGGCTCAACGGTCAAAAATGTATCAATCAAGTTGGAATCCATTCGTCGACTGGATA
128 AATA-TGAGAGGCTCAACGGTCAAAAATGTATCAATCAAGTTGGAATCCATTCATAAACTGAATA
* * * ** * * *
63967761 TTAGTGGTTGCCCAATGGTCGAATTTTTA-AAAGTCCCGAGAGGCTTAATATG-GCTAAAGTTAT
192 TTAGTGATTGCCCAATGATCAAATTTCCAGAAA-TCCCAAGAAGCTTAATA-GAACTAAAGTTAT
** *
63967824 CTAACACTCAAATTGAAGAAGCGGCCATGTCTATAGACACTTTAAGTAATCTT
255 CTAACACTCAAATTGAAGAAGCGGCCATACCTATAGACACTCTAAGTAATCTT
63967877 AAGGAGTTAA
Statistics
Matches: 254, Mismatches: 47, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
377 8 0.03
378 243 0.96
379 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (378 bp):
TCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTAT
CTAGAACTCAAATTGAAGAAGTATCATTCCCTTTCGACCCTCTATGTAATCTTCAGGACTTAAAT
ATGAGAGGCTCAACGGTCAAAAATGTATCAATCAAGTTGGAATCCATTCATAAACTGAATATTAG
TGATTGCCCAATGATCAAATTTCCAGAAATCCCAAGAAGCTTAATAGAACTAAAGTTATCTAACA
CTCAAATTGAAGAAGCGGCCATACCTATAGACACTCTAAGTAATCTTCAGATCTTAAATATGAGT
GGCTCAGCAGTCAAAAATATATCGATCAGGTTGGAATCCCTTCGTAAACTGGA
Found at i:63978047 original size:138 final size:138
Alignment explanation
Indices: 63977799--63978279 Score: 935
Period size: 138 Copynumber: 3.5 Consensus size: 138
63977789 TCCTATTGAT
63977799 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
1 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
63977864 ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
66 ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
*
63977929 AGAACTCC
131 AAAACTCC
63977937 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
1 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
63978002 ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
66 ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
63978067 AAAACTCC
131 AAAACTCC
*
63978075 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAAAAGGCTAATACATAG
1 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
63978140 ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
66 ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
63978205 AAAACTCC
131 AAAACTCC
*
63978213 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGTCCACATCACCAGAAGGCTAATACATAG
1 CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
63978278 AC
66 AC
63978280 TTAAGGCTTA
Statistics
Matches: 339, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 339 1.00
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (138 bp):
CTTTTAATACTCTTTCATGCCTTCTTCTTCATCAAAGCCCACATCACCAGAAGGCTAATACATAG
ACCTTGACTTGGAAATTAACACCCATCATCATCGTCGTCGTTTGGAACAAGTTTTCTTGTTGGTC
AAAACTCC
Found at i:63979522 original size:22 final size:22
Alignment explanation
Indices: 63979472--63979522 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
63979462 TCCAAACAAT
63979472 AACAATAAAATATTAACAATAC
1 AACAATAAAATATTAACAATAC
* *
63979494 GATAATAAAAT-TGTAACGAA-AC
1 AACAATAAAATAT-TAAC-AATAC
63979516 AACAATA
1 AACAATA
63979523 TAACAGCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.04
22 20 0.87
23 2 0.09
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.22
Consensus pattern (22 bp):
AACAATAAAATATTAACAATAC
Found at i:63983208 original size:125 final size:125
Alignment explanation
Indices: 63983052--63983304 Score: 470
Period size: 125 Copynumber: 2.0 Consensus size: 125
63983042 GCTACTATGA
* *
63983052 AGGGAATGAAGATGGCAGTGATCGGTGTAAGAAAAACAGATGAGGAAACAGAGAGTCAAGAGGGA
1 AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGGAAACAGAAAGTCAAGAGGGA
*
63983117 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATTCAAAAAAGAG
66 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
*
63983177 AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGGAAATAGAAAGTCAAGAGGGA
1 AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGGAAACAGAAAGTCAAGAGGGA
63983242 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
66 ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
63983302 AGG
1 AGG
63983305 AATAAGTAAG
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 124 1.00
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (125 bp):
AGGGAATGAAGATGGCAGTGATCGGCGTAAGAAAAACAGATGAGGAAACAGAAAGTCAAGAGGGA
ATTAATGGCAGATCTTTGGAAAGGCCATTATGCTTGGAATTTTAGCTATACAAAAAAGAG
Found at i:64006238 original size:42 final size:42
Alignment explanation
Indices: 64006190--64006394 Score: 270
Period size: 42 Copynumber: 4.9 Consensus size: 42
64006180 AGCGTTTAAA
*
64006190 AAAATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAG
1 AAAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
64006233 AAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
** *
64006275 AAAAAAACGCCGCTAAAGATCATGTTCTTTAATGGCGTTTA-
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
*
64006316 AAGAAAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTT-G
1 AA-AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* * **
64006358 AAGAAAACCGTCGCTAAAGGGCATGTTCTTTAGCGGC
1 AA-AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGC
64006395 ACTTTATACA
Statistics
Matches: 143, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.01
42 138 0.97
43 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
Found at i:64006343 original size:126 final size:129
Alignment explanation
Indices: 64006181--64006416 Score: 338
Period size: 126 Copynumber: 1.9 Consensus size: 129
64006171 TATGTTTGCA
* *
64006181 GCGTTTAAAAAAATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAGAA-ATAAA-CGCC
1 GCGTTTAAAAAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTT-GAAGA-AAACCGCC
*
64006244 GCTAAAGATCATGTTCTTTAGCGGCAC-TTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAAT
64 GCTAAAGAGCATGTTCTTTAGCGGCACTTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAAT
64006308 G
129 G
* *
64006309 GCGTTT-AAAGAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTGAAGAAAACCGTCGC
1 GCGTTTAAAAAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTGAAGAAAACCGCCGC
* * * *
64006372 TAAAGGGCATGTTCTTTAGCGGCACTTTATACACAAACGCCGCTA
66 TAAAGAGCATGTTCTTTAGCGGCACTTTAGAAAAAAACGCCGCTA
64006417 TAGGGACACG
Statistics
Matches: 96, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
125 6 0.06
126 63 0.66
127 21 0.22
128 6 0.06
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (129 bp):
GCGTTTAAAAAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTGAAGAAAACCGCCGC
TAAAGAGCATGTTCTTTAGCGGCACTTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAATG
Found at i:64006859 original size:21 final size:21
Alignment explanation
Indices: 64006828--64006900 Score: 110
Period size: 21 Copynumber: 3.5 Consensus size: 21
64006818 TTCTTTTGAA
*
64006828 CCTCTGTTTCTCTCACTGTAG
1 CCTCTGCTTCTCTCACTGTAG
*
64006849 CGTCTGCTTCTCTCACTGTAG
1 CCTCTGCTTCTCTCACTGTAG
* *
64006870 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCTCTCACTGTAG
64006891 CCTCTGCTTC
1 CCTCTGCTTC
64006901 CCTCGCTACC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.07, C:0.38, G:0.16, T:0.38
Consensus pattern (21 bp):
CCTCTGCTTCTCTCACTGTAG
Found at i:64006914 original size:21 final size:21
Alignment explanation
Indices: 64006868--64006916 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
64006858 CTCTCACTGT
* *
64006868 AGCCTCTGCTTCTCTCGCTGC
1 AGCCTCTGCTTCCCTCGCTAC
64006889 AGCCTCTGCTTCCCTCGCTAC
1 AGCCTCTGCTTCCCTCGCTAC
*
64006910 CGCCTCT
1 AGCCTCT
64006917 ACTTTAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.06, C:0.47, G:0.16, T:0.31
Consensus pattern (21 bp):
AGCCTCTGCTTCCCTCGCTAC
Found at i:64006915 original size:42 final size:42
Alignment explanation
Indices: 64006828--64006916 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
64006818 TTCTTTTGAA
* * * * **
64006828 CCTCTGTTTCTCTCACTGTAGCGTCTGCTTCTCTCACTGTAG
1 CCTCTGCTTCTCTCACTGCAGCCTCTGCTTCCCTCACTACAG
* * *
64006870 CCTCTGCTTCTCTCGCTGCAGCCTCTGCTTCCCTCGCTACCG
1 CCTCTGCTTCTCTCACTGCAGCCTCTGCTTCCCTCACTACAG
64006912 CCTCT
1 CCTCT
64006917 ACTTTAAGTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.07, C:0.42, G:0.16, T:0.36
Consensus pattern (42 bp):
CCTCTGCTTCTCTCACTGCAGCCTCTGCTTCCCTCACTACAG
Done.