Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 214 of 218
Found at i:64012428 original size:25 final size:25
Alignment explanation
Indices: 64012400--64012926 Score: 201
Period size: 25 Copynumber: 20.8 Consensus size: 25
64012390 TGATATATTT
64012400 TTATGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
*
64012425 TTATATATTATGT-A-TTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
* *
64012448 -TACTGTAAGTAATGTGAGTTATGTAAG
1 TTA-TGT-A-TTATGTAAGTTATGTAAG
* *
64012475 TAATGTATTATGTAAGTTGTGT-A-
1 TTATGTATTATGTAAGTTATGTAAG
* *
64012498 TAATGTAAGTTAAG-AAGGTTATGT-A-
1 TTATGT-A-TTATGTAA-GTTATGTAAG
* * * *
64012523 -TATGTA--A-GTTATTTAAGTAAA
1 TTATGTATTATGTAAGTTATGTAAG
*
64012544 TGT-TGTATTATGTAAGTTATTTAAG
1 T-TATGTATTATGTAAGTTATGTAAG
64012569 TTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
*
64012596 TTATTTAATTTATGTAAGTTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
*
64012623 TTATGTATGTTATGT-A-TTATGTTAG
1 TTATGTA--TTATGTAAGTTATGTAAG
* *
64012648 TTATTATGTTATTATATAAGTTATGCAAG
1 ---TTATG-TATTATGTAAGTTATGTAAG
* * *
64012677 TT-TCTATATATGTTTA-TATATTGTATG
1 TTATGTAT-TATG-TAAGT-TA-TGTAAG
* *
64012704 TTA-GTTATTATGTTA-TTATATAAG
1 TTATG-TATTATGTAAGTTATGTAAG
* * *
64012728 TTATGCAAGTTATATAAGTTATTTAAG
1 TTATG-TA-TTATGTAAGTTATGTAAG
*
64012755 TTGTGTAAATGT-TGT-A-TTATGTAAG
1 TTATGT--AT-TATGTAAGTTATGTAAG
* *
64012780 TTATGTATTATGTAAGATATGTACG
1 TTATGTATTATGTAAGTTATGTAAG
* * * * *
64012805 TTGTATTTTATGTAATTTCTGT-A-
1 TTATGTATTATGTAAGTTATGTAAG
*
64012828 TTATGTATGTTATGTAAGTTGTGT-AG
1 TTATGTA--TTATGTAAGTTATGTAAG
* *
64012854 -AATGTAAGCTATGTAAGTTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
**
64012880 TTATGTAAGTGGTGT-A-TTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
*
64012905 TTGTGTAAGTTATGTAAGTTAT
1 TTATGT-A-TTATGTAAGTTAT
64012927 TATGTAAGTT
Statistics
Matches: 383, Mismatches: 69, Indels: 98
0.70 0.13 0.18
Matches are distributed among these distances:
19 6 0.02
20 3 0.01
22 7 0.02
23 28 0.07
24 23 0.06
25 159 0.42
26 27 0.07
27 109 0.28
28 12 0.03
29 9 0.02
ACGTcount: A:0.31, C:0.01, G:0.19, T:0.48
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:64012678 original size:29 final size:30
Alignment explanation
Indices: 64012646--64012750 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 30
64012636 GTATTATGTT
64012646 AGTTAT-TATGTTATTATATAAGTTATGCA
1 AGTTATATATGTTATTATATAAGTTATGCA
* **
64012675 AGTTTCTATATATG-T-TTATAT-ATTGTATGTT
1 AG--T-TATATATGTTATTATATAAGT-TATGCA
64012706 AGTTAT-TATGTTATTATATAAGTTATGCA
1 AGTTATATATGTTATTATATAAGTTATGCA
*
64012735 AGTTATATAAGTTATT
1 AGTTATATATGTTATT
64012751 TAAGTTGTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
27 4 0.07
28 4 0.07
29 19 0.32
30 12 0.20
31 13 0.22
32 4 0.07
33 4 0.07
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.51
Consensus pattern (30 bp):
AGTTATATATGTTATTATATAAGTTATGCA
Found at i:64012884 original size:43 final size:43
Alignment explanation
Indices: 64012828--64012926 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
64012818 AATTTCTGTA
* *
64012828 TTATGTATGTTATGTAAGTTGTGTAGAATGTAAGCTATGTAAG
1 TTATGTAAGTTATGTAAGTGGTGTAGAATGTAAGCTATGTAAG
** * *
64012871 TTATGTAAGTTATGTAAGTGGTGTATTATGTAAGTTGTGTAAG
1 TTATGTAAGTTATGTAAGTGGTGTAGAATGTAAGCTATGTAAG
64012914 TTATGTAAGTTAT
1 TTATGTAAGTTAT
64012927 TATGTAAGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.44
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGTGGTGTAGAATGTAAGCTATGTAAG
Found at i:64012901 original size:34 final size:31
Alignment explanation
Indices: 64012872--64012948 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 31
64012862 CTATGTAAGT
64012872 TATGTAAGTTATGTAAGTGGTGTATTATGTAAGT
1 TATGTAAGTTATGTAA-T-GT-TATTATGTAAGT
*
64012906 TGTGTAAGTTATGTAA-GTTATTATGTAAGT
1 TATGTAAGTTATGTAATGTTATTATGTAAGT
*
64012936 TATGCAAGCTTAT
1 TATGTAAG-TTAT
64012949 ATATAAGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 18 0.46
31 6 0.15
34 15 0.38
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.44
Consensus pattern (31 bp):
TATGTAAGTTATGTAATGTTATTATGTAAGT
Found at i:64012931 original size:12 final size:12
Alignment explanation
Indices: 64012914--64012938 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64012904 GTTGTGTAAG
64012914 TTATGTAAGTTA
1 TTATGTAAGTTA
64012926 TTATGTAAGTTA
1 TTATGTAAGTTA
64012938 T
1 T
64012939 GCAAGCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:64012934 original size:21 final size:22
Alignment explanation
Indices: 64012908--64012948 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
64012898 ATGTAAGTTG
*
64012908 TGTAAGTTATGTAAG-TTATTA
1 TGTAAGTTATGCAAGCTTATTA
64012929 TGTAAGTTATGCAAGCTTAT
1 TGTAAGTTATGCAAGCTTAT
64012949 ATATAAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.44
Consensus pattern (22 bp):
TGTAAGTTATGCAAGCTTATTA
Found at i:64012939 original size:9 final size:9
Alignment explanation
Indices: 64012407--64012926 Score: 286
Period size: 9 Copynumber: 60.4 Consensus size: 9
64012397 TTTTTATGTA
64012407 TTATGTAAG
1 TTATGTAAG
64012416 TTATGTAAG
1 TTATGTAAG
*
64012425 TTATAT-A-
1 TTATGTAAG
64012432 TTATGT-A-
1 TTATGTAAG
64012439 TTATGTAAG
1 TTATGTAAG
64012448 -TACTGTAAG
1 TTA-TGTAAG
* *
64012457 TAATGTGAG
1 TTATGTAAG
64012466 TTATGTAAG
1 TTATGTAAG
*
64012475 TAATGT-A-
1 TTATGTAAG
64012482 TTATGTAAG
1 TTATGTAAG
*
64012491 TTGTGT-A-
1 TTATGTAAG
*
64012498 TAATGTAAG
1 TTATGTAAG
*
64012507 TTAAG-AAGG
1 TTATGTAA-G
64012516 TTATGT-A-
1 TTATGTAAG
64012523 -TATGTAAG
1 TTATGTAAG
*
64012531 TTATTTAAG
1 TTATGTAAG
* *
64012540 TAAATGT-TG
1 T-TATGTAAG
64012549 TATTATGTAAG
1 --TTATGTAAG
*
64012560 TTATTTAAG
1 TTATGTAAG
64012569 TTATGTAAG
1 TTATGTAAG
64012578 TTATGTAAG
1 TTATGTAAG
64012587 TTATGTAAG
1 TTATGTAAG
* *
64012596 TTATTTAAT
1 TTATGTAAG
64012605 TTATGTAAG
1 TTATGTAAG
64012614 TTATGTAAG
1 TTATGTAAG
*
64012623 TTATGTATG
1 TTATGTAAG
64012632 TTATGT-A-
1 TTATGTAAG
*
64012639 TTATGTTAG
1 TTATGTAAG
*
64012648 TTAT-TATG
1 TTATGTAAG
*
64012656 TTATTATATAAG
1 ---TTATGTAAG
*
64012668 TTATGCAAG
1 TTATGTAAG
*
64012677 TT-TCT-A-
1 TTATGTAAG
*
64012683 TATATGTTTA-
1 T-TATG-TAAG
*
64012693 TATATTGTATG
1 T-TA-TGTAAG
*
64012704 TTA-GTTA-
1 TTATGTAAG
*
64012711 TTATGTTA-
1 TTATGTAAG
*
64012719 TTATATAAG
1 TTATGTAAG
*
64012728 TTATGCAAG
1 TTATGTAAG
*
64012737 TTATATAAG
1 TTATGTAAG
*
64012746 TTATTTAAG
1 TTATGTAAG
* *
64012755 TTGTGTAAA
1 TTATGTAAG
64012764 TGT-TGT-A-
1 T-TATGTAAG
64012771 TTATGTAAG
1 TTATGTAAG
64012780 TTATGT-A-
1 TTATGTAAG
64012787 TTATGTAAG
1 TTATGTAAG
* *
64012796 ATATGTACG
1 TTATGTAAG
**
64012805 -T-TGTATT
1 TTATGTAAG
*
64012812 TTATGTAAT
1 TTATGTAAG
*
64012821 TTCTGT-A-
1 TTATGTAAG
*
64012828 TTATGTATG
1 TTATGTAAG
64012837 TTATGTAAG
1 TTATGTAAG
*
64012846 TTGTGT-AG
1 TTATGTAAG
*
64012854 -AATGTAAG
1 TTATGTAAG
*
64012862 CTATGTAAG
1 TTATGTAAG
64012871 TTATGTAAG
1 TTATGTAAG
64012880 TTATGTAAG
1 TTATGTAAG
**
64012889 TGGTGT-A-
1 TTATGTAAG
64012896 TTATGTAAG
1 TTATGTAAG
*
64012905 TTGTGTAAG
1 TTATGTAAG
64012914 TTATGTAAG
1 TTATGTAAG
64012923 TTAT
1 TTAT
64012927 TATGTAAGTT
Statistics
Matches: 396, Mismatches: 70, Indels: 90
0.71 0.13 0.16
Matches are distributed among these distances:
6 7 0.02
7 59 0.15
8 40 0.10
9 261 0.66
10 17 0.04
11 9 0.02
12 3 0.01
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:64012955 original size:21 final size:21
Alignment explanation
Indices: 64012910--64012960 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
64012900 GTAAGTTGTG
* *
64012910 TAAGTTATGTAAGTTATTATG
1 TAAGTTATGCAAGTTATTATA
64012931 TAAGTTATGCAAGCTTA-TATA
1 TAAGTTATGCAAG-TTATTATA
64012952 TAAGCTTAT
1 TAAG-TTAT
64012961 ATATAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (21 bp):
TAAGTTATGCAAGTTATTATA
Found at i:64012956 original size:12 final size:12
Alignment explanation
Indices: 64012941--64012966 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64012931 TAAGTTATGC
64012941 AAGCTTATATAT
1 AAGCTTATATAT
64012953 AAGCTTATATAT
1 AAGCTTATATAT
64012965 AA
1 AA
64012967 TTATTTAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (12 bp):
AAGCTTATATAT
Found at i:64013047 original size:30 final size:30
Alignment explanation
Indices: 64013013--64013094 Score: 105
Period size: 28 Copynumber: 2.8 Consensus size: 30
64013003 TTTATTACTA
* *
64013013 ATAAATTTAGAACACTTATTTAGAAAACTT
1 ATAAATTTAGAAAACTTATATAGAAAACTT
* *
64013043 ATAAATTT--AATACTAATATAGAAAACTT
1 ATAAATTTAGAAAACTTATATAGAAAACTT
*
64013071 ATGAATTTAGAAAACTTATATAGA
1 ATAAATTTAGAAAACTTATATAGA
64013095 TATTAAAACA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 24 0.55
30 20 0.45
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (30 bp):
ATAAATTTAGAAAACTTATATAGAAAACTT
Found at i:64013397 original size:21 final size:21
Alignment explanation
Indices: 64013368--64013409 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
64013358 TCCAAAATTT
*
64013368 ATTGTGTTTTTGGCACGAATG
1 ATTGCGTTTTTGGCACGAATG
*
64013389 ATTGCGTTTTTTGCACGAATG
1 ATTGCGTTTTTGGCACGAATG
64013410 TAGCAAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.43
Consensus pattern (21 bp):
ATTGCGTTTTTGGCACGAATG
Found at i:64014124 original size:16 final size:16
Alignment explanation
Indices: 64014084--64014124 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
64014074 TGAAATCCGG
64014084 GAAATTGGGGGAAAAT
1 GAAATTGGGGGAAAAT
*
64014100 G-AATTGGGGGGAAAT
1 GAAATTGGGGGAAAAT
*
64014115 GAAATCGGGG
1 GAAATTGGGG
64014125 AAGTTGGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.37, C:0.02, G:0.44, T:0.17
Consensus pattern (16 bp):
GAAATTGGGGGAAAAT
Found at i:64014148 original size:23 final size:24
Alignment explanation
Indices: 64014103--64014149 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
64014093 GGAAAATGAA
*
64014103 TTGGGGGGAAATGAAATCGGGGAAG
1 TTGGGGGGAAAGGAAATC-GGGAAG
*
64014128 TTGGGGGGATAGGAAAT-GGGAA
1 TTGGGGGGAAAGGAAATCGGGAA
64014150 ATTAGGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
25 15 0.75
ACGTcount: A:0.32, C:0.02, G:0.49, T:0.17
Consensus pattern (24 bp):
TTGGGGGGAAAGGAAATCGGGAAG
Found at i:64014516 original size:115 final size:115
Alignment explanation
Indices: 64014281--64014733 Score: 439
Period size: 114 Copynumber: 3.9 Consensus size: 115
64014271 TCCTAGACAG
* * * * *
64014281 AAAACGACAACGTTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAATGCCACTAA
1 AAAACGACAACATTTAGCAAACACTAAAAACATAATTGCGGCATTT-TTATAAAAACGCCACTAA
* * * * * *
64014346 AACATATCC-TTTACCGGCGTTTTAGTACAAATGCCATTAAAAACGTAGATA
65 CACATAACCTTTTA-CGGCATTTTAGTAAAAACGCCACTAAAAACGTAGATA
* * *** *
64014397 AAAACGACAACGTTTAGCGAACACTTGTAACATAATTGCGGCATTTTTATAAAAACGCCACTATC
1 AAAACGACAACATTTAGCAAACACTAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTAAC
* * * *
64014462 ACATAACCTTTTACGGCATTTTCGTAAAAATGCCACTAATAATGTAGATA
66 ACATAACCTTTTACGGCATTTTAGTAAAAACGCCACTAAAAACGTAGATA
* * * * *** *
64014512 AAAACGACAACATTTA-CAGAAGACTAATAACATAATTGTGGC-GTTACCTAACAACGCCACTAA
1 AAAACGACAACATTTAGCA-AACACTAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTAA
* * * * * *
64014575 CACATATCATTTTGCGGCGTTTTGGCAAAAACGCCACTAAAAACGTAGATA
65 CACATAACCTTTTACGGCATTTTAGTAAAAACGCCACTAAAAACGTAGATA
* * * * *
64014626 AAAACGACAACATTTAACAAAGACAAAAAACATAATTGCGGCATTTTTCGTAGAAACGCCACT-A
1 AAAACGACAACATTTAGCAAACACTAAAAACATAATTGCGGCATTTTT-ATAAAAACGCCACTAA
* *
64014690 -ATATAACTCCTTTTGCGGCATTTTAGTAAAAACGCCACTAAAAA
65 CACATAA--CCTTTTACGGCATTTTAGTAAAAACGCCACTAAAAA
64014734 ATCAGACAAA
Statistics
Matches: 279, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
114 98 0.35
115 92 0.33
116 89 0.32
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.25
Consensus pattern (115 bp):
AAAACGACAACATTTAGCAAACACTAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTAAC
ACATAACCTTTTACGGCATTTTAGTAAAAACGCCACTAAAAACGTAGATA
Found at i:64014747 original size:229 final size:230
Alignment explanation
Indices: 64014281--64014733 Score: 529
Period size: 229 Copynumber: 2.0 Consensus size: 230
64014271 TCCTAGACAG
* *
64014281 AAAACGACAACGTTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAATGCCACTAA
1 AAAACGACAACATTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAACGCCACTAA
* * * * * *
64014346 AACATATCCTTTACCGGCGTTTTAGTACAAATGCCATTAAAAACGTAGATAAAAACGACAACGTT
66 AACATATCATTTACCGGCGTTTTAGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAACATT
* * ****
64014411 TAGCGAACACTTGTAACATAATTGCGGCATTTTTATAAAAACGCCACTATCACATAACCTTTTAC
131 TAACAAACACAAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTA-CACATAACCTTTTAC
* * * *
64014476 GGCATTTTCGTAAAAATGCCACTAATAATGTAGATA
195 GGCATTTTAGTAAAAACGCCACTAAAAATGCAGATA
* * ** *
64014512 AAAACGACAACATTTA-CAGAAGAC-TAATAACATAATTGTGGCG-TTA-CCTAACAACGCCACT
1 AAAACGACAACATTTAGCA-AACACTTAA-AACATAATTGCGGCGTTTATAATAAAAACGCCACT
* ** *
64014573 AACACATATCATTTTGCGGCGTTTTGGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAACA
64 AAAACATATCATTTACCGGCGTTTTAGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAACA
* * * *
64014638 TTTAACAAAGACAAAAAACATAATTGCGGCATTTTTCGTAGAAACGCCACTA-ATATAACTCCTT
129 TTTAACAAACACAAAAAACATAATTGCGGCATTTTT-ATAAAAACGCCACTACACATAA--CCTT
*
64014702 TTGCGGCATTTTAGTAAAAACGCCACTAAAAA
191 TTACGGCATTTTAGTAAAAACGCCACTAAAAA
64014734 ATCAGACAAA
Statistics
Matches: 186, Mismatches: 31, Indels: 11
0.82 0.14 0.05
Matches are distributed among these distances:
228 5 0.03
229 95 0.51
230 53 0.28
231 33 0.18
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.25
Consensus pattern (230 bp):
AAAACGACAACATTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAACGCCACTAA
AACATATCATTTACCGGCGTTTTAGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAACATT
TAACAAACACAAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTACACATAACCTTTTACG
GCATTTTAGTAAAAACGCCACTAAAAATGCAGATA
Found at i:64015156 original size:21 final size:21
Alignment explanation
Indices: 64015132--64015207 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 21
64015122 CCATAAATCG
*
64015132 TAAATCATAAATTATAAACCC
1 TAAACCATAAATTATAAACCC
*
64015153 TAAAACCATAAATCT-TAAACCT
1 T-AAACCATAAAT-TATAAACCC
*
64015175 TAAACCATAAATCATAAACCC
1 TAAACCATAAATTATAAACCC
64015196 TAAACCACTAAA
1 TAAACCA-TAAA
64015208 GCCCATGAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
21 25 0.53
22 21 0.45
23 1 0.02
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAACCATAAATTATAAACCC
Found at i:64015185 original size:36 final size:38
Alignment explanation
Indices: 64015106--64015185 Score: 92
Period size: 36 Copynumber: 2.1 Consensus size: 38
64015096 ACCCTAAGCT
* **
64015106 ATAAACCCTAAATTAACCATAAATCGTAAATCATAAATT
1 ATAAACCCTAAA-TAACCATAAATCGTAAACCATAAACC
* *
64015145 ATAAACCCT-AA-AACCATAAATCTTAAACCTTAAACC
1 ATAAACCCTAAATAACCATAAATCGTAAACCATAAACC
64015181 ATAAA
1 ATAAA
64015186 TCATAAACCC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
36 25 0.69
38 2 0.06
39 9 0.25
ACGTcount: A:0.53, C:0.21, G:0.01, T:0.25
Consensus pattern (38 bp):
ATAAACCCTAAATAACCATAAATCGTAAACCATAAACC
Found at i:64015199 original size:7 final size:7
Alignment explanation
Indices: 64015120--64015207 Score: 59
Period size: 7 Copynumber: 12.3 Consensus size: 7
64015110 ACCCTAAATT
64015120 AACCATA
1 AACCATA
* *
64015127 AATCGTA
1 AACCATA
*
64015134 AATCATA
1 AACCATA
**
64015141 AATTATA
1 AACCATA
*
64015148 AACCCTAA
1 AACCAT-A
64015156 AACCATA
1 AACCATA
* *
64015163 AATCTTA
1 AACCATA
*
64015170 AACCTTA
1 AACCATA
64015177 AACCATA
1 AACCATA
*
64015184 AATCATA
1 AACCATA
*
64015191 AACCCTA
1 AACCATA
64015198 AACCACTA
1 AACCA-TA
64015206 AA
1 AA
64015208 GCCCATGAAC
Statistics
Matches: 63, Mismatches: 16, Indels: 3
0.77 0.20 0.04
Matches are distributed among these distances:
7 53 0.84
8 10 0.16
ACGTcount: A:0.52, C:0.24, G:0.01, T:0.23
Consensus pattern (7 bp):
AACCATA
Found at i:64015440 original size:21 final size:22
Alignment explanation
Indices: 64015410--64015464 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
64015400 ATAAATCCTA
*
64015410 AAACCCTAAACTA-TAAA-AATT
1 AAACCTTAAA-TACTAAACAATT
*
64015431 AAACCTTAAATACTAAACACTT
1 AAACCTTAAATACTAAACAATT
*
64015453 AAACCTAAAATA
1 AAACCTTAAATA
64015465 AATTTATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 13 0.45
22 14 0.48
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (22 bp):
AAACCTTAAATACTAAACAATT
Found at i:64017792 original size:9 final size:9
Alignment explanation
Indices: 64017770--64017859 Score: 119
Period size: 9 Copynumber: 10.1 Consensus size: 9
64017760 TACGTGGATG
*
64017770 CAGATGATA
1 CAGATGCTA
*
64017779 TAGATGCTA
1 CAGATGCTA
64017788 CAGATGCTA
1 CAGATGCTA
64017797 CAGATGCTA
1 CAGATGCTA
64017806 CAGATGCTA
1 CAGATGCTA
* *
64017815 TAGATGATA
1 CAGATGCTA
*
64017824 CAGATGATA
1 CAGATGCTA
64017833 CAGATGCTA
1 CAGATGCTA
*
64017842 CAGAT-ATA
1 CAGATGCTA
64017850 CAGATGCTA
1 CAGATGCTA
64017859 C
1 C
64017860 TGAAAAGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
8 7 0.10
9 64 0.90
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (9 bp):
CAGATGCTA
Found at i:64021674 original size:22 final size:22
Alignment explanation
Indices: 64021623--64021674 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
64021613 TTTTAGCAGT
*
64021623 TTTTTAGAACCTCTTTTTTCTA
1 TTTTTAGTACCTCTTTTTTCTA
64021645 TTTTTAGTACCTCTTTTTTCTA
1 TTTTTAGTACCTCTTTTTTCTA
64021667 TTTTTAGT
1 TTTTTAGT
64021675 CTTGAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.63
Consensus pattern (22 bp):
TTTTTAGTACCTCTTTTTTCTA
Found at i:64026397 original size:43 final size:43
Alignment explanation
Indices: 64026173--64026414 Score: 235
Period size: 43 Copynumber: 5.7 Consensus size: 43
64026163 TTTTAGAAAT
* * *
64026173 AAACACCGCTATAGATC-AGACCTTTAGCGACGTTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
64026215 AAAC-ACGCTATAGGTTAGGACCTTTAGCGGTG-TTGTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTT-TTCCCAC
* * * * *
64026257 AAAAGTCACTATAGCTCAAGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* ** *
64026300 AAACGCCACTATAGATCAAGACCTTTAGCAACGCTTATT-TCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTT-TTCCCAC
**
64026343 AAACGTAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
*
64026386 AAACGCCGCTATAAAAT-AA-ACCTTTAGCG
1 AAACGCCGCTAT-AGATCAAGACCTTTAGCG
64026415 ACGGTTCTCG
Statistics
Matches: 163, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
41 11 0.07
42 38 0.23
43 107 0.66
44 7 0.04
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:64026432 original size:42 final size:41
Alignment explanation
Indices: 64026363--64026442 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 41
64026353 ATAGATCAAG
* * * *
64026363 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAAAATAA
1 ACCTTTAGCGACGCTTCTCCCAAAAACGCCACTA-AAAATAA
* *
64026405 ACCTTTAGCGACGGTTCTCGCAAAAACGCCACTAAAAA
1 ACCTTTAGCGACGCTTCTCCCAAAAACGCCACTAAAAA
64026443 CATAACATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 4 0.12
42 28 0.88
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (41 bp):
ACCTTTAGCGACGCTTCTCCCAAAAACGCCACTAAAAATAA
Found at i:64031216 original size:21 final size:21
Alignment explanation
Indices: 64031179--64031280 Score: 82
Period size: 21 Copynumber: 4.9 Consensus size: 21
64031169 CCTAACTATT
*
64031179 AACCCTTAAACCTTAAACCCC
1 AACCCATAAACCTTAAACCCC
*
64031200 AGCCCAT-AACTCTTAAACCCC
1 AACCCATAAAC-CTTAAACCCC
* **
64031221 AACCCTTAAACCTTAAACCAT
1 AACCCATAAACCTTAAACCCC
* * * **
64031242 AAACCATAATCCCTAAACCAT
1 AACCCATAAACCTTAAACCCC
64031263 ATA-CCATAAACCTTAAAC
1 A-ACCCATAAACCTTAAAC
64031281 ATTAAAAACC
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
20 3 0.05
21 59 0.89
22 4 0.06
ACGTcount: A:0.42, C:0.36, G:0.01, T:0.21
Consensus pattern (21 bp):
AACCCATAAACCTTAAACCCC
Found at i:64031259 original size:42 final size:42
Alignment explanation
Indices: 64031179--64031260 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
64031169 CCTAACTATT
* ** *
64031179 AACCCTTAAACCTTAAACCCCAGCCCATAACTCTTAAACCCC
1 AACCCTTAAACCTTAAACCACAAACCATAACTCCTAAACCCC
*
64031221 AACCCTTAAACCTTAAACCATAAACCATAA-TCCCTAAACC
1 AACCCTTAAACCTTAAACCACAAACCATAACT-CCTAAACC
64031261 ATATACCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.40, C:0.39, G:0.01, T:0.20
Consensus pattern (42 bp):
AACCCTTAAACCTTAAACCACAAACCATAACTCCTAAACCCC
Found at i:64031296 original size:7 final size:7
Alignment explanation
Indices: 64031227--64031280 Score: 63
Period size: 7 Copynumber: 7.7 Consensus size: 7
64031217 CCCCAACCCT
*
64031227 TAAACCT
1 TAAACCA
64031234 TAAACCA
1 TAAACCA
64031241 TAAACCA
1 TAAACCA
* *
64031248 TAATCCC
1 TAAACCA
64031255 TAAACCA
1 TAAACCA
*
64031262 TATACCA
1 TAAACCA
*
64031269 TAAACCT
1 TAAACCA
64031276 TAAAC
1 TAAAC
64031281 ATTAAAAACC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:64031454 original size:14 final size:14
Alignment explanation
Indices: 64031437--64031463 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64031427 CCCATAACGT
64031437 CTAACCCCTAAACC
1 CTAACCCCTAAACC
64031451 CTAACCCCTAAAC
1 CTAACCCCTAAAC
64031464 ATTAAATCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.15
Consensus pattern (14 bp):
CTAACCCCTAAACC
Found at i:64031513 original size:15 final size:15
Alignment explanation
Indices: 64031486--64031526 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
64031476 CCCTTAAACT
64031486 ATAATCCCT-AATCC
1 ATAATCCCTAAATCC
64031500 ATAATCCCTAAATCC
1 ATAATCCCTAAATCC
*
64031515 ATACTCCCTAAA
1 ATAATCCCTAAA
64031527 CCTTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.39, C:0.34, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAATCCCTAAATCC
Found at i:64031951 original size:41 final size:41
Alignment explanation
Indices: 64031906--64032072 Score: 174
Period size: 41 Copynumber: 4.1 Consensus size: 41
64031896 GCCGCTACAT
* *
64031906 CCCCGAGCATTAGCGGCGCTTCTTCAAAAATGCCACTAAAG
1 CCCCGAGCATTAGCGACGCTTCTTCAAAAACGCCACTAAAG
* ** * * * *
64031947 CCCCGAACATTAGCGACGCTTCTTTGAGAACGTCGCTAAAT
1 CCCCGAGCATTAGCGACGCTTCTTCAAAAACGCCACTAAAG
** *
64031988 CCCCGAGCATTAGC-AGCGCTTCTTCAAAAACGCTGCTAAAA
1 CCCCGAGCATTAGCGA-CGCTTCTTCAAAAACGCCACTAAAG
* * * *
64032029 CCCCGAGCATTAGCGACGCTTCTTCCAAAATGCTACTAGAG
1 CCCCGAGCATTAGCGACGCTTCTTCAAAAACGCCACTAAAG
64032070 CCC
1 CCC
64032073 TAAAAGGTCT
Statistics
Matches: 103, Mismatches: 21, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
40 1 0.01
41 101 0.98
42 1 0.01
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (41 bp):
CCCCGAGCATTAGCGACGCTTCTTCAAAAACGCCACTAAAG
Found at i:64032040 original size:82 final size:82
Alignment explanation
Indices: 64031898--64032052 Score: 247
Period size: 82 Copynumber: 1.9 Consensus size: 82
64031888 TAAAAAAAGC
* * * *
64031898 CGCTACATCCCCGAGCATTAGCGGCGCTTCTTCAAAAATGCCACTAAAGCCCCGAACATTAGCGA
1 CGCTAAATCCCCGAGCATTAGCAGCGCTTCTTCAAAAACGCCACTAAAACCCCGAACATTAGCGA
64031963 CGCTTCTTTGAGAACGT
66 CGCTTCTTTGAGAACGT
** *
64031980 CGCTAAATCCCCGAGCATTAGCAGCGCTTCTTCAAAAACGCTGCTAAAACCCCGAGCATTAGCGA
1 CGCTAAATCCCCGAGCATTAGCAGCGCTTCTTCAAAAACGCCACTAAAACCCCGAACATTAGCGA
64032045 CGCTTCTT
66 CGCTTCTT
64032053 CCAAAATGCT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 66 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (82 bp):
CGCTAAATCCCCGAGCATTAGCAGCGCTTCTTCAAAAACGCCACTAAAACCCCGAACATTAGCGA
CGCTTCTTTGAGAACGT
Found at i:64038377 original size:23 final size:22
Alignment explanation
Indices: 64038326--64038377 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
64038316 CCTCGTCTTT
*
64038326 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
64038348 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
64038371 TTCTTTT
1 TTCTTTT
64038378 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:64038386 original size:12 final size:12
Alignment explanation
Indices: 64038335--64038389 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
64038325 TTTCTTTTGT
64038335 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
64038348 -TCATTTTC-TC
1 TTCTTTTTCAAC
64038358 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
64038371 TTCTTTTTCAAT
1 TTCTTTTTCAAC
64038383 TTCTTTT
1 TTCTTTT
64038390 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:64038396 original size:17 final size:18
Alignment explanation
Indices: 64038371--64038408 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
64038361 TTTCTTCAAC
* *
64038371 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
64038388 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
64038406 TTC
1 TTC
64038409 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:64062750 original size:28 final size:28
Alignment explanation
Indices: 64062710--64062768 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
64062700 ATTTATTGTT
64062710 ATATCAATATCAAAATTATGTGAATTTG
1 ATATCAATATCAAAATTATGTGAATTTG
64062738 ATATCAATATCAAAATTATGTGAATTTG
1 ATATCAATATCAAAATTATGTGAATTTG
64062766 ATA
1 ATA
64062769 GAAGACATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (28 bp):
ATATCAATATCAAAATTATGTGAATTTG
Found at i:64063506 original size:83 final size:82
Alignment explanation
Indices: 64063346--64063511 Score: 289
Period size: 83 Copynumber: 2.0 Consensus size: 82
64063336 GTTTTAGTCT
64063346 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
1 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
*
64063411 TTTCTTGTTGGTCAAAA
66 TTTCTTGCTGGTCAAAA
*
64063428 CCCATTGGAAGACCTTGACTTGGAAATTAACAC-CCATCATTATCATCATCGTCATTTGGAACAA
1 CCCATTGGAAGACCTTGACTTGGAAATTAACACACC--CATCATCATCATCGTCATTTGGAACAA
64063492 GTTTTCTTGCTGGTCAAAA
64 GTTTTCTTGCTGGTCAAAA
64063511 C
1 C
64063512 TCCCTTTTAA
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
81 2 0.03
82 33 0.41
83 45 0.56
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (82 bp):
CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
TTTCTTGCTGGTCAAAA
Found at i:64064835 original size:22 final size:22
Alignment explanation
Indices: 64064790--64064840 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
64064780 TCCAAACAAT
64064790 AACAATAAAATATTAACAATAC
1 AACAATAAAATATTAACAATAC
*
64064812 AATAATAAAAT-TGTAACGAA-AC
1 AACAATAAAATAT-TAAC-AATAC
64064834 AACAATA
1 AACAATA
64064841 TAACAGCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 22 0.88
23 2 0.08
ACGTcount: A:0.63, C:0.12, G:0.04, T:0.22
Consensus pattern (22 bp):
AACAATAAAATATTAACAATAC
Found at i:64087605 original size:12 final size:12
Alignment explanation
Indices: 64087588--64087612 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64087578 GGTGTGCATT
64087588 CGGTTAACCGAC
1 CGGTTAACCGAC
64087600 CGGTTAACCGAC
1 CGGTTAACCGAC
64087612 C
1 C
64087613 CGAAATAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:64087796 original size:9 final size:9
Alignment explanation
Indices: 64087776--64087857 Score: 119
Period size: 9 Copynumber: 9.1 Consensus size: 9
64087766 GGTTAAAAAC
*
64087776 TAACCAAAT
1 TAACCGAAT
*
64087785 TAACCGATT
1 TAACCGAAT
64087794 TAACCGAAT
1 TAACCGAAT
64087803 TAACCGAAT
1 TAACCGAAT
64087812 TAACCGAAT
1 TAACCGAAT
*
64087821 TACCCGAAT
1 TAACCGAAT
*
64087830 TAACTGAAT
1 TAACCGAAT
64087839 TAACCGAAT
1 TAACCGAAT
*
64087848 TACCCGAAT
1 TAACCGAAT
64087857 T
1 T
64087858 GAATCACTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 65 1.00
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
TAACCGAAT
Found at i:64087904 original size:37 final size:37
Alignment explanation
Indices: 64087856--64087930 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
64087846 ATTACCCGAA
* *
64087856 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAACCACTACATAATTAAAAACATTACATAAGTCT
*
64087893 TTGAACCACTACATAATTAAAAACATTACATAATTCT
1 TTGAACCACTACATAATTAAAAACATTACATAAGTCT
64087930 T
1 T
64087931 GAAATTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (37 bp):
TTGAACCACTACATAATTAAAAACATTACATAAGTCT
Found at i:64087924 original size:17 final size:17
Alignment explanation
Indices: 64087865--64087927 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
64087855 ATTGAATCAC
*
64087865 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
** * *
64087882 TACATAAGTCTTTGAACCAC
1 TACATAA---TTAAAAACAT
64087902 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
64087919 TACATAATT
1 TACATAATT
64087928 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 22 0.65
20 12 0.35
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:64087941 original size:13 final size:13
Alignment explanation
Indices: 64087923--64087948 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64087913 AAACATTACA
64087923 TAATTCTTGAAAT
1 TAATTCTTGAAAT
64087936 TAATTCTTGAAAT
1 TAATTCTTGAAAT
64087949 AACACATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
TAATTCTTGAAAT
Found at i:64088158 original size:39 final size:39
Alignment explanation
Indices: 64088073--64088181 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
64088063 ACTTAAGAGT
* * *
64088073 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTTGG
1 TAGACTTTTGTTTTAGTTTTATTGGGTTAGGTAATTGGG
* *
64088111 TAGGCTTTTGTTTTAGTTTTATTAGGTTAGGTAATTGGG
1 TAGACTTTTGTTTTAGTTTTATTGGGTTAGGTAATTGGG
64088150 TAGACTTTTGTTTTAGTTTTATTGGGTTAGGT
1 TAGACTTTTGTTTTAGTTTTATTGGGTTAGGT
64088182 TGGTAATTGG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 24 0.38
39 39 0.62
ACGTcount: A:0.17, C:0.03, G:0.26, T:0.54
Consensus pattern (39 bp):
TAGACTTTTGTTTTAGTTTTATTGGGTTAGGTAATTGGG
Found at i:64092241 original size:42 final size:42
Alignment explanation
Indices: 64092148--64092349 Score: 230
Period size: 42 Copynumber: 4.9 Consensus size: 42
64092138 TTAAAAAAAT
* * * * *
64092148 AAACGCCGCTAAAGGTCATATTCTTTAGCGGTGGTTAGA-AA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
** *
64092189 AAAC-CCGCTAAAGATCATGTTCTTTAATGGCGTTTAAAGAA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
* *
64092230 AAACGCCGCTAAATATCATGTTCTTTAGCGGCGCTTGAAG-A
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
** * *
64092271 AAACTGCCGCTAAAGGGCATGTTCTTTAGCGGCGCCTGAAGAA
1 AAAC-GCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
* *
64092314 AAACGTCGCTAAAGAACATGTTCTTTAGCGGCGCTT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
64092350 TATACACAAA
Statistics
Matches: 137, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
40 27 0.20
41 15 0.11
42 90 0.66
43 5 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (42 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAA
Found at i:64098327 original size:9 final size:9
Alignment explanation
Indices: 64098313--64098883 Score: 262
Period size: 9 Copynumber: 65.4 Consensus size: 9
64098303 TTTTTATGTA
64098313 TTATGTAAG
1 TTATGTAAG
64098322 TTATGTAAG
1 TTATGTAAG
* *
64098331 CTATAT-A-
1 TTATGTAAG
64098338 TTATGT-A-
1 TTATGTAAG
64098345 TTATGTAAG
1 TTATGTAAG
*
64098354 -AACTGTAAG
1 TTA-TGTAAG
* *
64098363 TAATGTGAG
1 TTATGTAAG
64098372 TTATGTAAG
1 TTATGTAAG
*
64098381 TAATGT-A-
1 TTATGTAAG
64098388 TTATGTAAG
1 TTATGTAAG
*
64098397 TTGTGT-A-
1 TTATGTAAG
*
64098404 TAATGTAAG
1 TTATGTAAG
*
64098413 TTAAG-AAGG
1 TTATGTAA-G
64098422 TTATGT-A-
1 TTATGTAAG
64098429 TTATGTAAG
1 TTATGTAAG
*
64098438 TTATTTAAG
1 TTATGTAAG
* *
64098447 TAAATGT-TG
1 T-TATGTAAG
64098456 TATTATGTAAG
1 --TTATGTAAG
*
64098467 TTATTTAAG
1 TTATGTAAG
64098476 TTATGTAAG
1 TTATGTAAG
* *
64098485 TTATTTAAT
1 TTATGTAAG
*
64098494 TTATATAAG
1 TTATGTAAG
64098503 TTATGTAAG
1 TTATGTAAG
64098512 TTATGTAAG
1 TTATGTAAG
*
64098521 TTAT-TTAG
1 TTATGTAAG
64098529 TTTATGTAAG
1 -TTATGTAAG
64098539 TTATGTAAG
1 TTATGTAAG
*
64098548 TTATGTAGG
1 TTATGTAAG
64098557 TTATGT-A-
1 TTATGTAAG
*
64098564 TTATGTTAG
1 TTATGTAAG
*
64098573 TTAT-TATG
1 TTATGTAAG
*
64098581 TTATTATATAAG
1 ---TTATGTAAG
*
64098593 TTATGCAAG
1 TTATGTAAG
*
64098602 TT-TCT-A-
1 TTATGTAAG
*
64098608 TATATGTTTA-
1 T-TATG-TAAG
*
64098618 TATATTGTATG
1 T-TA-TGTAAG
*
64098629 TTA-GTTA-
1 TTATGTAAG
*
64098636 TTATGTTA-
1 TTATGTAAG
*
64098644 TTATATAAG
1 TTATGTAAG
*
64098653 TTATGCAAG
1 TTATGTAAG
*
64098662 TTATATAAG
1 TTATGTAAG
*
64098671 TTATTTAAG
1 TTATGTAAG
* *
64098680 TTGTGTAAA
1 TTATGTAAG
64098689 TGT-TGT-A-
1 T-TATGTAAG
64098696 TTATGTAAG
1 TTATGTAAG
64098705 TTATGT-A-
1 TTATGTAAG
64098712 TTATGTAAG
1 TTATGTAAG
* * *
64098721 ATACGTACG
1 TTATGTAAG
**
64098730 -T-TGTATT
1 TTATGTAAG
*
64098737 TTATGTAAT
1 TTATGTAAG
*
64098746 TTCTGT-A-
1 TTATGTAAG
*
64098753 TTATGTATG
1 TTATGTAAG
64098762 TTATGTAAG
1 TTATGTAAG
*
64098771 TTGTGT-AG
1 TTATGTAAG
*
64098779 -AATGTAAG
1 TTATGTAAG
*
64098787 CTATGTAAG
1 TTATGTAAG
64098796 TTATGTAAG
1 TTATGTAAG
64098805 TTATGTAAG
1 TTATGTAAG
**
64098814 TGGTGT-A-
1 TTATGTAAG
*
64098821 TTACGTAAG
1 TTATGTAAG
*
64098830 TTGTGTAAG
1 TTATGTAAG
64098839 TTATGTAAG
1 TTATGTAAG
64098848 TTATTATGTAAG
1 ---TTATGTAAG
*
64098860 TTATGCAAG
1 TTATGTAAG
*
64098869 CTTATATAAG
1 -TTATGTAAG
64098879 CTTAT
1 -TTAT
64098884 ATATAATTAT
Statistics
Matches: 430, Mismatches: 82, Indels: 99
0.70 0.13 0.16
Matches are distributed among these distances:
6 2 0.00
7 61 0.14
8 43 0.10
9 270 0.63
10 33 0.08
11 9 0.02
12 12 0.03
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:64098347 original size:32 final size:34
Alignment explanation
Indices: 64098279--64098353 Score: 109
Period size: 32 Copynumber: 2.3 Consensus size: 34
64098269 CATAAATGAG
* *
64098279 TTATGTAAGTTATGATATGATATATTTTTATGTA
1 TTATGTAAGTTATGATAAGATATATTATTATGTA
*
64098313 TTATGTAAGTTATG-TAAGCTATA-TATTATGTA
1 TTATGTAAGTTATGATAAGATATATTATTATGTA
64098345 TTATGTAAG
1 TTATGTAAG
64098354 AACTGTAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 17 0.45
33 7 0.18
34 14 0.37
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.49
Consensus pattern (34 bp):
TTATGTAAGTTATGATAAGATATATTATTATGTA
Found at i:64098512 original size:36 final size:36
Alignment explanation
Indices: 64098357--64098883 Score: 179
Period size: 34 Copynumber: 14.8 Consensus size: 36
64098347 ATGTAAGAAC
* * * *
64098357 TGTAAGTAATGTGAGTTATGTAAGTAATGT-A-TTA
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* * ** *
64098391 TGTAAGTTGTGT-A-TAATGTAAGTTA-AGAAGGTTA
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAA-TTTA
* * *
64098425 TGT-A-TTATGTAAGTTATTTAAGTAAATGTT-GTATTA
1 TGTAAGTTATGTAAGTTATGTAAGT-TAT-TTAAT-TTA
*
64098461 TGTAAGTTATTTAAGTTATGTAAGTTATTTAATTTA
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* *
64098497 TATAAGTTATGTAAGTTATGTAAGTTATTTAGTTTA
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* *
64098533 TGTAAGTTATGTAAGTTATGTAGGTTATGT-A-TTA
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* * * **
64098567 TGTTAGTTAT-TATGTTATTATATAAGTTATGCAAGTTTCTA
1 TGTAAGTTATGTAAG---TTATGTAAGTTATTTAA--TT-TA
* * * * * **
64098608 TATATGTT-TATATATTGTATGTTAGTTATTATGTTATTA
1 TGTAAGTTATGTA-AGT-TATGTAAGTTATT-TAAT-TTA
* * * * *
64098647 TATAAGTTATGCAAGTTATATAAGTTATTTAAGTTG
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* *
64098683 TGTAAATGT-TGT-A-TTATGTAAGTTATGT-A-TTA
1 TGTAAGT-TATGTAAGTTATGTAAGTTATTTAATTTA
* * * ** * *
64098715 TGTAAGATACGTACG-T-TGTATTTTATGTAATTTC
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* * *
64098749 TGT-A-TTATGTATGTTATGTAAGTTGTGTAGA---A
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTA-ATTTA
* * * **
64098781 TGTAAGCTATGTAAGTTATGTAAGTTATGTAAGTGG
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
* * *
64098817 TGT-A-TTACGTAAGTTGTGTAAGTTATGTAAGTTATTA
1 TGTAAGTTATGTAAGTTATGTAAGTTATTTAA--T-TTA
* *
64098854 TGTAAGTTATGCAAGCTTATATAAGCTTAT
1 TGTAAGTTATGTAAG-TTATGTAAG-TTAT
64098884 ATATAATTAT
Statistics
Matches: 361, Mismatches: 85, Indels: 87
0.68 0.16 0.16
Matches are distributed among these distances:
31 1 0.00
32 44 0.12
33 13 0.04
34 109 0.30
35 4 0.01
36 95 0.26
37 11 0.03
38 29 0.08
39 20 0.06
40 22 0.06
41 13 0.04
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.47
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA
Found at i:64098603 original size:29 final size:30
Alignment explanation
Indices: 64098571--64098675 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 30
64098561 GTATTATGTT
64098571 AGTTAT-TATGTTATTATATAAGTTATGCA
1 AGTTATATATGTTATTATATAAGTTATGCA
* **
64098600 AGTTTCTATATATG-T-TTATAT-ATTGTATGTT
1 AG--T-TATATATGTTATTATATAAGT-TATGCA
64098631 AGTTAT-TATGTTATTATATAAGTTATGCA
1 AGTTATATATGTTATTATATAAGTTATGCA
*
64098660 AGTTATATAAGTTATT
1 AGTTATATATGTTATT
64098676 TAAGTTGTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
27 4 0.07
28 4 0.07
29 19 0.32
30 12 0.20
31 13 0.22
32 4 0.07
33 4 0.07
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.51
Consensus pattern (30 bp):
AGTTATATATGTTATTATATAAGTTATGCA
Found at i:64098698 original size:60 final size:60
Alignment explanation
Indices: 64098456--64098701 Score: 175
Period size: 60 Copynumber: 4.0 Consensus size: 60
64098446 GTAAATGTTG
* ** * * * *
64098456 TATTATGTAAGTTATTTAAGTTATGTAAGTTATTTAA-TTTATATAAGTTATGTAAGTTATGT
1 TATTATATAAGTTATGCAAGTTATATAAGTTATTTAAGTTTGTA-ATGTTA-GTTA-TTATGT
* * * * * *
64098518 AAGTTAT-TTAGTTTATGTAAGTTATGTAAGTTATGTAGGTTATGTATTATGTTAGTTATTATGT
1 TA-TTATATAAG-TTATGCAAGTTATATAAGTTATTTAAGTT-TGTA--ATGTTAGTTATTATGT
* *
64098582 TATTATATAAGTTATGCAAGTT-TCTATA-TATGTTTATA-TATTGT-ATGTTAGTTATTATGT
1 TATTATATAAGTTATGCAAGTTATATA-AGT-TATTTA-AGT-TTGTAATGTTAGTTATTATGT
64098642 TATTATATAAGTTATGCAAGTTATATAAGTTATTTAAGTTGTGTAAATGTT-G-TATTATGT
1 TATTATATAAGTTATGCAAGTTATATAAGTTATTTAAGTT-TGT-AATGTTAGTTATTATGT
64098702 AAGTTATGTA
Statistics
Matches: 151, Mismatches: 17, Indels: 34
0.75 0.08 0.17
Matches are distributed among these distances:
59 2 0.01
60 56 0.37
61 5 0.03
62 13 0.09
63 50 0.33
64 13 0.09
65 6 0.04
66 6 0.04
ACGTcount: A:0.31, C:0.01, G:0.16, T:0.51
Consensus pattern (60 bp):
TATTATATAAGTTATGCAAGTTATATAAGTTATTTAAGTTTGTAATGTTAGTTATTATGT
Found at i:64098711 original size:16 final size:17
Alignment explanation
Indices: 64098644--64098851 Score: 85
Period size: 16 Copynumber: 12.2 Consensus size: 17
64098634 TATTATGTTA
* *
64098644 TTATATAAGTTATGCAAG
1 TTATGTAAGTTATG-TAG
* *
64098662 TTATATAAGTTATTTAAG
1 TTATGTAAGTTATGT-AG
* *
64098680 TTGTGTAAATGT-TGTA-
1 TTATGTAAGT-TATGTAG
64098696 TTATGTAAGTTATGTA-
1 TTATGTAAGTTATGTAG
* *
64098712 TTATGTAAGATACGTACG
1 TTATGTAAGTTATGTA-G
** *
64098730 -T-TGTATTTTATGTAAT
1 TTATGTAAGTTATGT-AG
*
64098746 TTCTGT-A-TTATGTATG
1 TTATGTAAGTTATGTA-G
*
64098762 TTATGTAAGTTGTGTAG
1 TTATGTAAGTTATGTAG
* *
64098779 -AATGTAAGCTATGTAAG
1 TTATGTAAGTTATGT-AG
64098796 TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-AG
** *
64098814 TGGTGT-A-TTACGTAAG
1 TTATGTAAGTTATGT-AG
*
64098830 TTGTGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-AG
64098848 TTAT
1 TTAT
64098852 TATGTAAGTT
Statistics
Matches: 145, Mismatches: 30, Indels: 30
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.01
16 69 0.48
17 10 0.07
18 63 0.43
19 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.46
Consensus pattern (17 bp):
TTATGTAAGTTATGTAG
Found at i:64098774 original size:41 final size:41
Alignment explanation
Indices: 64098696--64098847 Score: 106
Period size: 43 Copynumber: 3.6 Consensus size: 41
64098686 AAATGTTGTA
*
64098696 TTATGTAAGTTATGTATTATGTAAGATACGTACGTTGTATT
1 TTATGTAAGTTATGTATTATGTAAGATACGTAAGTTGTATT
* * * * * * *
64098737 TTATGTAATTTCTGTATTATGTATGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTATTATGTAAGATACGTAAGTTGTATT
** * * * * * *
64098778 GAATGTAAGCTATGTAAGTTATGTAAGTTATGTAAGTGGTGTA
1 TTATGTAAGTTATGT-A-TTATGTAAGATACGTAAGTTGTATT
* *
64098821 TTACGTAAGTTGTGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
64098848 TTATTATGTA
Statistics
Matches: 89, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
41 43 0.48
42 1 0.01
43 45 0.51
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (41 bp):
TTATGTAAGTTATGTATTATGTAAGATACGTAAGTTGTATT
Found at i:64098777 original size:25 final size:25
Alignment explanation
Indices: 64098731--64098811 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
64098721 ATACGTACGT
* * *
64098731 TGTATTTTATGTAATTTCTGTATTA
1 TGTATGTTATGTAAGTTATGTATTA
* **
64098756 TGTATGTTATGTAAGTTGTGTAGAA
1 TGTATGTTATGTAAGTTATGTATTA
* *
64098781 TGTAAGCTATGTAAGTTATGTAAGTTA
1 TGTATGTTATGTAAGTTATGT-A-TTA
64098808 TGTA
1 TGTA
64098812 AGTGGTGTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
25 38 0.86
26 1 0.02
27 5 0.11
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.48
Consensus pattern (25 bp):
TGTATGTTATGTAAGTTATGTATTA
Found at i:64098808 original size:43 final size:43
Alignment explanation
Indices: 64098753--64098851 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
64098743 AATTTCTGTA
* * *
64098753 TTATGTATGTTATGTAAGTTGTGTAGAATGTAAGCTATGTAAG
1 TTATGTAAGTTATGTAAGTGGTGTAGAACGTAAGCTATGTAAG
** * *
64098796 TTATGTAAGTTATGTAAGTGGTGTATTACGTAAGTTGTGTAAG
1 TTATGTAAGTTATGTAAGTGGTGTAGAACGTAAGCTATGTAAG
64098839 TTATGTAAGTTAT
1 TTATGTAAGTTAT
64098852 TATGTAAGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.43
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGTGGTGTAGAACGTAAGCTATGTAAG
Found at i:64098856 original size:12 final size:12
Alignment explanation
Indices: 64098839--64098863 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64098829 GTTGTGTAAG
64098839 TTATGTAAGTTA
1 TTATGTAAGTTA
64098851 TTATGTAAGTTA
1 TTATGTAAGTTA
64098863 T
1 T
64098864 GCAAGCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:64098986 original size:15 final size:15
Alignment explanation
Indices: 64098966--64098998 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
64098956 TAGAAAACTT
64098966 ATAAATTTAATACTA
1 ATAAATTTAATACTA
64098981 ATAAATTTAATACTA
1 ATAAATTTAATACTA
64098996 ATA
1 ATA
64098999 TAGAAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:64099012 original size:43 final size:44
Alignment explanation
Indices: 64098920--64099017 Score: 135
Period size: 43 Copynumber: 2.2 Consensus size: 44
64098910 ATTAATACTA
* * *
64098920 ATAAATTTTATTACTAATAAATTTAGAACACTTATTTAGAAAACTT
1 ATAAA-TTTAATACTAATAAATTTA-AACACTAATATAGAAAACTT
*
64098966 ATAAATTTAATACTAATAAATTT-AATACTAATATAGAAAACTT
1 ATAAATTTAATACTAATAAATTTAAACACTAATATAGAAAACTT
64099009 ATAAATTTA
1 ATAAATTTA
64099018 GAAAACTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
43 26 0.54
45 17 0.35
46 5 0.10
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (44 bp):
ATAAATTTAATACTAATAAATTTAAACACTAATATAGAAAACTT
Found at i:64099018 original size:60 final size:59
Alignment explanation
Indices: 64098890--64099028 Score: 176
Period size: 61 Copynumber: 2.3 Consensus size: 59
64098880 TTATATATAA
* *
64098890 TTATTTAGAAAACTTATAAAATTAATACTAATAAATTTTATTACTAATAAATTTAGAACAC
1 TTATTTAGAAAACTTATAAAATTAATACTAATAAATTTTAATACTAAT-AA-TTAGAAAAC
*
64098951 TTATTTAGAAAACTTATAAATTTAATACTAATAAA-TTTAATACTAAT-A-TAGAAAAC
1 TTATTTAGAAAACTTATAAAATTAATACTAATAAATTTTAATACTAATAATTAGAAAAC
64099007 TTATAAATTTAGAAAACTTATA
1 -T-T--ATTTAGAAAACTTATA
64099029 TAGATATTAA
Statistics
Matches: 71, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
56 7 0.10
57 1 0.01
58 2 0.03
60 27 0.38
61 34 0.48
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (59 bp):
TTATTTAGAAAACTTATAAAATTAATACTAATAAATTTTAATACTAATAATTAGAAAAC
Found at i:64099068 original size:19 final size:18
Alignment explanation
Indices: 64098999--64099073 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 18
64098989 AATACTAATA
64098999 TAGAAAACTTATAA-ATT
1 TAGAAAACTTATAATATT
*
64099016 TAGAAAACTTATATAGATAT
1 TAGAAAACTTATA-ATAT-T
*
64099036 TA-AAACAATATATAATTATT
1 TAGAAA-ACT-TATAA-TATT
64099056 TAGAAAACTTATAA-ATT
1 TAGAAAACTTATAATATT
64099073 T
1 T
64099074 TATAGTAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
17 17 0.35
18 1 0.02
19 10 0.21
20 11 0.23
21 9 0.19
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.37
Consensus pattern (18 bp):
TAGAAAACTTATAATATT
Found at i:64099976 original size:8 final size:8
Alignment explanation
Indices: 64099963--64099987 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64099953 ACATGAGGGA
64099963 ATTTGGGG
1 ATTTGGGG
64099971 ATTTGGGG
1 ATTTGGGG
64099979 ATTTGGGG
1 ATTTGGGG
64099987 A
1 A
64099988 AATGAAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (8 bp):
ATTTGGGG
Found at i:64100013 original size:24 final size:25
Alignment explanation
Indices: 64099983--64100029 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
64099973 TTGGGGATTT
*
64099983 GGGGAAATGAAATT-GGGGAAATTG
1 GGGGAAAAGAAATTGGGGGAAATTG
*
64100007 GGGGAAAAGGAATTGGGGGAAAT
1 GGGGAAAAGAAATTGGGGGAAAT
64100030 GAAATCGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.45, T:0.17
Consensus pattern (25 bp):
GGGGAAAAGAAATTGGGGGAAATTG
Found at i:64100039 original size:15 final size:15
Alignment explanation
Indices: 64100000--64100039 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
64099990 TGAAATTGGG
64100000 GAAATTGGGGGAAAA
1 GAAATTGGGGGAAAA
* *
64100015 GGAATTGGGGGAAAT
1 GAAATTGGGGGAAAA
*
64100030 GAAATCGGGG
1 GAAATTGGGG
64100040 AAGTTGGGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.03, G:0.45, T:0.15
Consensus pattern (15 bp):
GAAATTGGGGGAAAA
Found at i:64100057 original size:39 final size:39
Alignment explanation
Indices: 64099983--64100062 Score: 115
Period size: 39 Copynumber: 2.1 Consensus size: 39
64099973 TTGGGGATTT
* *
64099983 GGGGAAATGAAATTGGGGAAATTGGGGGAAAAGGAATTG
1 GGGGAAATGAAATCGGGGAAATTGGGGGAAAAGGAAATG
* * *
64100022 GGGGAAATGAAATCGGGGAAGTTGGGGGGATAGGAAATG
1 GGGGAAATGAAATCGGGGAAATTGGGGGAAAAGGAAATG
64100061 GG
1 GG
64100063 AAATTAGGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.01, G:0.47, T:0.16
Consensus pattern (39 bp):
GGGGAAATGAAATCGGGGAAATTGGGGGAAAAGGAAATG
Found at i:64100424 original size:115 final size:114
Alignment explanation
Indices: 64100196--64100647 Score: 464
Period size: 114 Copynumber: 3.9 Consensus size: 114
64100186 TCCTAGACAG
* * *
64100196 AAAATGACAACGTTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAACGCCACTAA
1 AAAACGACAACGTTTAGCAAACACTAAAAACATAATTGCGGCGTTT-TTATAAAAACGCCACTAA
* * * *
64100261 AACATATCC-TTTACCGGCGTTTTAGTACAAACGCCATTAAAAACGTAGATA
65 CACATAACCTTTTA-CGGCGTTTTAGTAAAAACGCCACT-AAAACGTAGATA
* *** * *
64100312 AAAACGACAACGTTTAGCGAACACTTGTAACATAATTGCGGCATTTTTATAAAAACGCCACTATC
1 AAAACGACAACGTTTAGCAAACACTAAAAACATAATTGCGGCGTTTTTATAAAAACGCCACTAAC
* * *
64100377 ACATAACCTTTTACGGCGTTTTCGTAAAAATGCCACTAATAATGTAGATA
66 ACATAACCTTTTACGGCGTTTTAGTAAAAACGCCACTAA-AACGTAGATA
* * *** * *
64100427 AAAACGACAACGTTTA-CAGAAGACTAATAACATAATTGCGGCG-TTACCTAACAATGCCACTAA
1 AAAACGACAACGTTTAGCA-AACACTAAAAACATAATTGCGGCGTTTTTATAAAAACGCCACTAA
* * * *
64100490 CACATATCATTTTACGGCGTTTTGGCAAAAACGCCACTGAAAACGTAGATA
65 CACATAACCTTTTACGGCGTTTTAGTAAAAACGCCACT-AAAACGTAGATA
* * * * * *
64100541 AAAACGACAACATTTAACAAAGACAAAAAACATAATTGCGGCGTTTTTCGTAGAAACGCCACT-A
1 AAAACGACAACGTTTAGCAAACACTAAAAACATAATTGCGGCGTTTTT-ATAAAAACGCCACTAA
* * *
64100605 -ATATAACTCCTTTTGCGGCATTTTAGTAAAAACGCCACTAAAA
65 CACATAA--CCTTTTACGGCGTTTTAGTAAAAACGCCACTAAAA
64100648 AATCAGACAA
Statistics
Matches: 280, Mismatches: 47, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
114 100 0.36
115 99 0.35
116 81 0.29
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (114 bp):
AAAACGACAACGTTTAGCAAACACTAAAAACATAATTGCGGCGTTTTTATAAAAACGCCACTAAC
ACATAACCTTTTACGGCGTTTTAGTAAAAACGCCACTAAAACGTAGATA
Found at i:64100662 original size:229 final size:230
Alignment explanation
Indices: 64100196--64100648 Score: 522
Period size: 229 Copynumber: 2.0 Consensus size: 230
64100186 TCCTAGACAG
*
64100196 AAAATGACAACGTTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAACGCCACTAA
1 AAAACGACAACGTTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAACGCCACTAA
* * * *
64100261 AACATATCCTTTACCGGCGTTTTAGTACAAACGCCATTAAAAACGTAGATAAAAACGACAACGTT
66 AACATATCCTTTACCGGCGTTTTAGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAACATT
* * ****
64100326 TAGCGAACACTTGTAACATAATTGCGGCATTTTTATAAAAACGCCACTATCACATAACCTTTTAC
131 TAACAAACACAAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTA-CACATAACCTTTTAC
* * * * *
64100391 GGCGTTTTCGTAAAAATGCCACTAATAATGTAGATA
195 GGCATTTTAGTAAAAACGCCACTAAAAATGCAGATA
* ** * *
64100427 AAAACGACAACGTTTA-CAGAAGAC-TAATAACATAATTGCGGCG-TTA-CCTAACAATGCCACT
1 AAAACGACAACGTTTAGCA-AACACTTAA-AACATAATTGCGGCGTTTATAATAAAAACGCCACT
* * * *
64100488 AACACATATCATTTTA-CGGCGTTTTGGCAAAAACGCCACTGAAAACGTAGATAAAAACGACAAC
64 AAAACATATC-CTTTACCGGCGTTTTAGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAAC
* * * * *
64100552 ATTTAACAAAGACAAAAAACATAATTGCGGCGTTTTTCGTAGAAACGCCACTA-ATATAACTCCT
128 ATTTAACAAACACAAAAAACATAATTGCGGCATTTTT-ATAAAAACGCCACTACACATAA--CCT
*
64100616 TTTGCGGCATTTTAGTAAAAACGCCACTAAAAA
190 TTTACGGCATTTTAGTAAAAACGCCACTAAAAA
64100649 ATCAGACAAA
Statistics
Matches: 186, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
228 5 0.03
229 91 0.49
230 56 0.30
231 34 0.18
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (230 bp):
AAAACGACAACGTTTAGCAAACACTTAAAACATAATTGCGGCGTTTATAATAAAAACGCCACTAA
AACATATCCTTTACCGGCGTTTTAGCAAAAACGCCACTAAAAACGTAGATAAAAACGACAACATT
TAACAAACACAAAAAACATAATTGCGGCATTTTTATAAAAACGCCACTACACATAACCTTTTACG
GCATTTTAGTAAAAACGCCACTAAAAATGCAGATA
Found at i:64101076 original size:22 final size:22
Alignment explanation
Indices: 64101051--64101117 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
64101041 ATAAAATCAT
64101051 AAATAATAAAT-TATAAACCCTA
1 AAATAATAAATCT-TAAACCCTA
* *
64101073 AAATCATAAATCTTAAACCTTA
1 AAATAATAAATCTTAAACCCTA
* *
64101095 AACGT--TAAACCTTAAACCCTA
1 AA-ATAATAAATCTTAAACCCTA
64101116 AA
1 AA
64101118 CTACTAAACC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
21 16 0.42
22 20 0.53
23 2 0.05
ACGTcount: A:0.52, C:0.19, G:0.01, T:0.27
Consensus pattern (22 bp):
AAATAATAAATCTTAAACCCTA
Found at i:64101094 original size:7 final size:7
Alignment explanation
Indices: 64101079--64101118 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
64101069 CCTAAAATCA
*
64101079 TAAATCT
1 TAAACCT
64101086 TAAACCT
1 TAAACCT
*
64101093 TAAACGT
1 TAAACCT
64101100 TAAACCT
1 TAAACCT
*
64101107 TAAACCC
1 TAAACCT
64101114 TAAAC
1 TAAAC
64101119 TACTAAACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.45, C:0.25, G:0.03, T:0.28
Consensus pattern (7 bp):
TAAACCT
Found at i:64101108 original size:21 final size:21
Alignment explanation
Indices: 64101079--64101118 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64101069 CCTAAAATCA
* *
64101079 TAAATCTTAAACCTTAAACGT
1 TAAACCTTAAACCCTAAACGT
64101100 TAAACCTTAAACCCTAAAC
1 TAAACCTTAAACCCTAAAC
64101119 TACTAAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.25, G:0.03, T:0.28
Consensus pattern (21 bp):
TAAACCTTAAACCCTAAACGT
Found at i:64101173 original size:15 final size:15
Alignment explanation
Indices: 64101133--64101219 Score: 56
Period size: 15 Copynumber: 5.9 Consensus size: 15
64101123 AAACCCCATG
*
64101133 AACCCCTAAACCCTT
1 AACCCATAAACCCTT
*
64101148 AACCTATAAACCCTT
1 AACCCATAAACCCTT
64101163 AAACCCA-AAACCC-T
1 -AACCCATAAACCCTT
* * * *
64101177 AAGCCATTACCCCAT
1 AACCCATAAACCCTT
* *
64101192 AGACCC-TAAGCCCAT
1 A-ACCCATAAACCCTT
64101207 AACCC-TAAACCCT
1 AACCCATAAACCCT
64101220 ATGCTCCTAA
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
13 5 0.09
14 15 0.26
15 29 0.51
16 8 0.14
ACGTcount: A:0.38, C:0.41, G:0.03, T:0.17
Consensus pattern (15 bp):
AACCCATAAACCCTT
Found at i:64101219 original size:7 final size:7
Alignment explanation
Indices: 64101086--64101253 Score: 61
Period size: 7 Copynumber: 22.9 Consensus size: 7
64101076 TCATAAATCT
*
64101086 TAAACCT
1 TAAACCC
**
64101093 TAAACGT
1 TAAACCC
*
64101100 TAAACCT
1 TAAACCC
64101107 TAAACCC
1 TAAACCC
*
64101114 TAAACTAC
1 TAAAC-CC
64101122 TAAACCCC
1 TAAA-CCC
*
64101130 ATGAACCCC
1 -T-AAACCC
64101139 TAAACCC
1 TAAACCC
* *
64101146 TTAACCTA
1 TAAACC-C
64101154 TAAACCC
1 TAAACCC
64101161 TTAAACCC
1 -TAAACCC
*
64101169 AAAACCC
1 TAAACCC
* *
64101176 TAAGCCA
1 TAAACCC
* *
64101183 TTACCCC
1 TAAACCC
*
64101190 ATAGACCC
1 -TAAACCC
*
64101198 TAAGCCC
1 TAAACCC
64101205 -ATAACCC
1 TA-AACCC
64101212 TAAACCC
1 TAAACCC
**
64101219 TATGCTCC
1 TAAAC-CC
64101227 T-AACCAC
1 TAAACC-C
*
64101234 TAAACAC
1 TAAACCC
*
64101241 TAAACCA
1 TAAACCC
64101248 TAAACC
1 TAAACC
64101254 ACGAACGGTA
Statistics
Matches: 118, Mismatches: 31, Indels: 24
0.68 0.18 0.14
Matches are distributed among these distances:
6 2 0.02
7 79 0.67
8 30 0.25
9 5 0.04
10 2 0.02
ACGTcount: A:0.40, C:0.37, G:0.04, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:64101357 original size:21 final size:22
Alignment explanation
Indices: 64101327--64101381 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
64101317 ATAAATCCTA
*
64101327 AAACCCTAAACTA-TAAA-AATT
1 AAACCTTAAA-TACTAAACAATT
*
64101348 AAACCTTAAATACTAAACACTT
1 AAACCTTAAATACTAAACAATT
*
64101370 AAACCTAAAATA
1 AAACCTTAAATA
64101382 AATTTATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 13 0.45
22 14 0.48
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (22 bp):
AAACCTTAAATACTAAACAATT
Found at i:64103818 original size:9 final size:9
Alignment explanation
Indices: 64103804--64103880 Score: 111
Period size: 9 Copynumber: 8.7 Consensus size: 9
64103794 TACGTGGATG
64103804 CAGATGATA
1 CAGATGATA
*
64103813 CAGATGCTA
1 CAGATGATA
*
64103822 CAGATGCTA
1 CAGATGATA
*
64103831 CAGATGCTA
1 CAGATGATA
*
64103840 TAGATGATA
1 CAGATGATA
64103849 CAGATGATA
1 CAGATGATA
64103858 CAGATGATA
1 CAGATGATA
64103867 CAGAT-ATA
1 CAGATGATA
64103875 CAGATG
1 CAGATG
64103881 CTACTGAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
8 8 0.13
9 55 0.87
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.23
Consensus pattern (9 bp):
CAGATGATA
Found at i:64116426 original size:43 final size:43
Alignment explanation
Indices: 64116365--64116452 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
64116355 GATCAAAAGA
64116365 AGATGATTTTGGGGTTGATTGAGCAAATGGACGTGCGTGTAAT
1 AGATGATTTTGGGGTTGATTGAGCAAATGGACGTGCGTGTAAT
64116408 AGATGATTTTGGGGTTGATTGAGCAAATGGACGTGCGTGTAAT
1 AGATGATTTTGGGGTTGATTGAGCAAATGGACGTGCGTGTAAT
64116451 AG
1 AG
64116453 GACTTTGGGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.26, C:0.07, G:0.35, T:0.32
Consensus pattern (43 bp):
AGATGATTTTGGGGTTGATTGAGCAAATGGACGTGCGTGTAAT
Found at i:64118737 original size:189 final size:185
Alignment explanation
Indices: 64118535--64118899 Score: 577
Period size: 188 Copynumber: 2.0 Consensus size: 185
64118525 AATTGCCCAG
64118535 TGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTATCTCGCACTCAAATTGAA
1 TGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTATCTCGCACTCAAATTGAA
* *
64118600 GAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGGACTTAAATATCAGTGGCTCAGCGGT
66 GAAGTGTCCTTGCC-TTCGACTCTCTATGTAATCTTCAGGACTTAAATATCAGTGGCTCAGCAGT
* *
64118665 CAAAAATGTATCGATCAAGTTGGATTCCCTTCGTAAACTGAATCTTAGTGAATGCTCGA
130 AAAAAATGTATCGATCAAGTTGGAATCCC-T--TAAACTGAATCTTAGTGAATGCTCGA
* * * * * *
64118724 TGATCAAATTTCCAGAAATCCCAAGAAGCTTAATAGAATTAAATTTATCTGGCTCTCAAATTGAA
1 TGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTATCTCGCACTCAAATTGAA
* *
64118789 GAAGTGTCCTTGCCTTCGACTCTCTATGTAATCTTCAGGTCTTAAATATGAGTGGCTCAGCAGTA
66 GAAGTGTCCTTGCCTTCGACTCTCTATGTAATCTTCAGGACTTAAATATCAGTGGCTCAGCAGTA
*
64118854 AAAAATGTATCGATCAAGTTGGAATCCCTTAAACTGGATCTTAGTG
131 AAAAATGTATCGATCAAGTTGGAATCCCTTAAACTGAATCTTAGTG
64118900 GTTGCCCAAT
Statistics
Matches: 163, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
185 16 0.10
187 1 0.01
188 74 0.45
189 72 0.44
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (185 bp):
TGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAAAATTAAACTTATCTCGCACTCAAATTGAA
GAAGTGTCCTTGCCTTCGACTCTCTATGTAATCTTCAGGACTTAAATATCAGTGGCTCAGCAGTA
AAAAATGTATCGATCAAGTTGGAATCCCTTAAACTGAATCTTAGTGAATGCTCGA
Found at i:64123867 original size:7 final size:8
Alignment explanation
Indices: 64123850--64123902 Score: 54
Period size: 8 Copynumber: 6.4 Consensus size: 8
64123840 ATAATAAATA
64123850 TTTTTATT
1 TTTTTATT
64123858 TTTTTATT
1 TTTTTATT
64123866 TTTTTATT
1 TTTTTATT
* *
64123874 TTAAAATAATT
1 TT---TTTATT
64123885 TTTTTA-T
1 TTTTTATT
64123892 TTTTTATT
1 TTTTTATT
64123900 TTT
1 TTT
64123903 AAAATAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 7 0.19
8 24 0.65
11 6 0.16
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTATT
Found at i:64123894 original size:26 final size:28
Alignment explanation
Indices: 64123855--64123915 Score: 99
Period size: 27 Copynumber: 2.2 Consensus size: 28
64123845 AAATATTTTT
64123855 ATTTTTTTATTTTTTTA-TTTTAAAATA
1 ATTTTTTTATTTTTTTATTTTTAAAATA
64123882 ATTTTTTTA-TTTTTTATTTTTAAAATA
1 ATTTTTTTATTTTTTTATTTTTAAAATA
*
64123909 AATTTTT
1 ATTTTTT
64123916 GGTGTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 7 0.22
27 25 0.78
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (28 bp):
ATTTTTTTATTTTTTTATTTTTAAAATA
Found at i:64123923 original size:26 final size:27
Alignment explanation
Indices: 64123868--64123925 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
64123858 TTTTTATTTT
* * *
64123868 TTTA-TTTTAAAATAATTTTTTTATTT
1 TTTATTTTTAAAATAATATTTTTAGTG
*
64123894 TTTATTTTTAAAATAA-ATTTTTGGTG
1 TTTATTTTTAAAATAATATTTTTAGTG
64123920 TTTATT
1 TTTATT
64123926 AAAAAATGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (27 bp):
TTTATTTTTAAAATAATATTTTTAGTG
Found at i:64136465 original size:83 final size:82
Alignment explanation
Indices: 64136305--64136470 Score: 280
Period size: 83 Copynumber: 2.0 Consensus size: 82
64136295 GTTGTAGTCT
*
64136305 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
1 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCATCATTTGGAACAAGT
*
64136370 TTTCTTGTTGGTCAAAA
66 TTTCTTGCTGGTCAAAA
*
64136387 CCCATTGGAAGACCTTGACTTGGAAATTAACAC-CCATCATTATCATCATCATCATTTGGAACAA
1 CCCATTGGAAGACCTTGACTTGGAAATTAACACACC--CATCATCATCATCATCATTTGGAACAA
64136451 GTTTTCTTGCTGGTCAAAA
64 GTTTTCTTGCTGGTCAAAA
64136470 C
1 C
64136471 TCCCTTTTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
81 2 0.03
82 33 0.42
83 44 0.56
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (82 bp):
CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCATCATTTGGAACAAGT
TTTCTTGCTGGTCAAAA
Found at i:64137877 original size:3 final size:3
Alignment explanation
Indices: 64137869--64137900 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
64137859 TCTTCCATGG
64137869 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
64137901 ACTCTAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:64142342 original size:9 final size:9
Alignment explanation
Indices: 64142328--64142397 Score: 104
Period size: 9 Copynumber: 7.8 Consensus size: 9
64142318 ATGCAGAGAG
64142328 TGATACAGA
1 TGATACAGA
64142337 TGATACAGA
1 TGATACAGA
* *
64142346 TGTTATAGA
1 TGATACAGA
64142355 TGATACAGA
1 TGATACAGA
64142364 TGATACAGA
1 TGATACAGA
*
64142373 TGGTACAGA
1 TGATACAGA
*
64142382 TGGTACAGA
1 TGATACAGA
64142391 TGATACA
1 TGATACA
64142398 ATGCTACTGC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 55 1.00
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (9 bp):
TGATACAGA
Found at i:64147375 original size:22 final size:22
Alignment explanation
Indices: 64147350--64147429 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 22
64147340 AAAATGTATG
*
64147350 ATAATTTTAAAACATGTTAGTA
1 ATAATTTTAAAACATATTAGTA
*
64147372 ATAA-TTTAAAA-ATAATAGTA
1 ATAATTTTAAAACATATTAGTA
*
64147392 TATTACATTTTAAAATCATATTAATA
1 -A-TA-ATTTTAAAA-CATATTAGTA
*
64147418 ATAAGTTTAAAA
1 ATAATTTTAAAA
64147430 GCAATGTCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
20 7 0.15
21 8 0.17
22 6 0.13
23 9 0.19
24 9 0.19
25 1 0.02
26 7 0.15
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (22 bp):
ATAATTTTAAAACATATTAGTA
Found at i:64148887 original size:50 final size:50
Alignment explanation
Indices: 64148825--64149026 Score: 271
Period size: 50 Copynumber: 4.0 Consensus size: 50
64148815 AGGGAGATAG
* * *
64148825 GATTTGCTGTTGTAGCTTCAATCTGTTTAACTGCAATGTCGGGGAAGTAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
* ** * *
64148875 GATTCG-TCGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAA
1 GATTCGCT-GTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
*
64148925 GATTCGCTGTTGTAGTTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
* * * *
64148975 GATTCGCTGTTGTAACTTCAATCTGTTCCACTACAATGTCGGAGAAATAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
64149025 GA
1 GA
64149027 AAATCTATCA
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 1 0.01
50 129 0.98
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (50 bp):
GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
Found at i:64148962 original size:100 final size:100
Alignment explanation
Indices: 64148825--64149009 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
64148815 AGGGAGATAG
* * *
64148825 GATTTGCTGTTGTAGCTTCAATCTGTTTAACTGCAATGTCGGGGAAGTAAGATTCG-TCGTTGTA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCT-GTTGTA
*
64148889 GCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAA
65 ACTTCAATCTGTTCCACTACACCGCCAGGGAAGTAA
*
64148925 GATTCGCTGTTGTAGTTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCTGTTGTAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCTGTTGTAA
64148990 CTTCAATCTGTTCCACTACA
66 CTTCAATCTGTTCCACTACA
64149010 ATGTCGGAGA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 78 0.99
101 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCTGTTGTAA
CTTCAATCTGTTCCACTACACCGCCAGGGAAGTAA
Found at i:64149026 original size:100 final size:100
Alignment explanation
Indices: 64148801--64149010 Score: 296
Period size: 100 Copynumber: 2.1 Consensus size: 100
64148791 TTCGATCCAA
* ** * * * * *
64148801 TCCACTGCAACGTTAGGGAGATAGGATTTGCTGTTGTAGCTTCAATCTGTTTAACTGCAATGTCG
1 TCCACTACAACGCCAGGGAAATAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCG
*
64148866 GGGAAGTAAGATTCGTCGTTGTAGCTTCAATCTGT
66 GGGAAGTAAGATTCGTCGTTGTAACTTCAATCTGT
* * *
64148901 TCCACTACACCGCCAGGGAAGTAAGATTCGCTGTTGTAGTTTCAATCTGTTCAACTACAATGTCG
1 TCCACTACAACGCCAGGGAAATAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCG
64148966 GGGAAGTAAGATTCG-CTGTTGTAACTTCAATCTGT
66 GGGAAGTAAGATTCGTC-GTTGTAACTTCAATCTGT
64149001 TCCACTACAA
1 TCCACTACAA
64149011 TGTCGGAGAA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 1 0.01
100 95 0.99
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
TCCACTACAACGCCAGGGAAATAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCG
GGGAAGTAAGATTCGTCGTTGTAACTTCAATCTGT
Found at i:64159528 original size:56 final size:56
Alignment explanation
Indices: 64159442--64159554 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
64159432 CTCGGAGCTT
64159442 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
1 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
64159498 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
1 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
64159554 C
1 C
64159555 TTTGCAGATC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (56 bp):
CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
Found at i:64160417 original size:12 final size:12
Alignment explanation
Indices: 64160400--64160428 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
64160390 ATCATAAATC
64160400 TTCATGTTATTT
1 TTCATGTTATTT
64160412 TTCATGTTATTT
1 TTCATGTTATTT
64160424 TTCAT
1 TTCAT
64160429 ATTGCCATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.66
Consensus pattern (12 bp):
TTCATGTTATTT
Found at i:64168110 original size:189 final size:189
Alignment explanation
Indices: 64167714--64168231 Score: 840
Period size: 189 Copynumber: 2.7 Consensus size: 189
64167704 GTGGTTGCCC
* * * * *
64167714 AATTGAAGAAGTGTCGTTGCCTTTCGACCCCCTATGTAATCTTCAGCACTTAAAAATGAGTGGCT
1 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
* * *
64167779 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCATTCGCAAACTGAATCTTAGTGGATGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
*
64167844 AT-GTCAAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
131 ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
* **
64167902 AATTGAAGAAGTGTCGTTGCCGTTCGACTCTCTATGTAATCTTCAGCTTTTAAATATGAGTAGCT
1 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
64167967 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
* *
64168032 CTGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAGAATTAAACTTATCTGGCACTCA
131 ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
64168091 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
1 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
* * * * * *
64168156 CAGGGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCATTATCTGGATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
*
64168221 AAGGTCGAATT
131 ATGGTCGAATT
64168232 ACTCTCAGAG
Statistics
Matches: 305, Mismatches: 24, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
188 121 0.40
189 184 0.60
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (189 bp):
AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
Found at i:64169488 original size:3 final size:3
Alignment explanation
Indices: 64169480--64169529 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
64169470 TGATTTTTTC
* * *
64169480 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTT TTA TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
64169528 TT
1 TT
64169530 TTCTCATCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (3 bp):
TTA
Found at i:64175063 original size:12 final size:12
Alignment explanation
Indices: 64175046--64175072 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64175036 CTCTTAAAGT
64175046 TTTGGGTTCTGA
1 TTTGGGTTCTGA
64175058 TTTGGGTTCTGA
1 TTTGGGTTCTGA
64175070 TTT
1 TTT
64175073 AAATAAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.30, T:0.56
Consensus pattern (12 bp):
TTTGGGTTCTGA
Found at i:64177671 original size:9 final size:9
Alignment explanation
Indices: 64177653--64177706 Score: 81
Period size: 9 Copynumber: 6.0 Consensus size: 9
64177643 GGATGCAGAG
64177653 AGATGCTAC
1 AGATGCTAC
*
64177662 AGATGATAC
1 AGATGCTAC
64177671 AGATGCTAC
1 AGATGCTAC
*
64177680 AGATGGTAC
1 AGATGCTAC
*
64177689 AGATGGTAC
1 AGATGCTAC
64177698 AGATGCTAC
1 AGATGCTAC
64177707 TGAAAAGAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (9 bp):
AGATGCTAC
Found at i:64177684 original size:27 final size:27
Alignment explanation
Indices: 64177653--64177706 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
64177643 GGATGCAGAG
64177653 AGATGCTACAGATGATACAGATGCTAC
1 AGATGCTACAGATGATACAGATGCTAC
* *
64177680 AGATGGTACAGATGGTACAGATGCTAC
1 AGATGCTACAGATGATACAGATGCTAC
64177707 TGAAAAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (27 bp):
AGATGCTACAGATGATACAGATGCTAC
Found at i:64178855 original size:218 final size:218
Alignment explanation
Indices: 64178473--64178904 Score: 837
Period size: 218 Copynumber: 2.0 Consensus size: 218
64178463 ATAGGTCCAA
*
64178473 TGGTGGACTCGGTTCAGCTTCGTTGTTTAGTTCCAGCGTTGGTATCATCTGGTATCTCAATACTT
1 TGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCAGCGTTGGTATCATCTGGTATCTCAATACTT
64178538 GCTGCATTTTCCTTCAATCATATCTTGATTCATTAGAAAGATTGGTTATTTGTGAGATTGTTTTT
66 GCTGCATTTTCCTTCAATCATATCTTGATTCATTAGAAAGATTGGTTATTTGTGAGATTGTTTTT
*
64178603 TCTTATATCCTTTGCTTCTGTGTTGATTTAAGATTAGGGAATGACAAATCTTTGGGAATGCCACT
131 TCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGGAATGACAAATCTTTGGGAATGCCACT
64178668 GCTGAATTGGAGCTTTAGCTATT
196 GCTGAATTGGAGCTTTAGCTATT
*
64178691 TGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCAGCGTTGGTATCATCTGGTATCTCAATGCTT
1 TGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCAGCGTTGGTATCATCTGGTATCTCAATACTT
64178756 GCTGCATTTTCCTTCAATCATATCTTGATTCATTAGAAAGATTGGTTATTTGTGAGATTGTTTTT
66 GCTGCATTTTCCTTCAATCATATCTTGATTCATTAGAAAGATTGGTTATTTGTGAGATTGTTTTT
64178821 TCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGGAATGACAAATCTTTGGGAATGCCACT
131 TCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGGAATGACAAATCTTTGGGAATGCCACT
64178886 GCTGAATTGGAGCTTTAGC
196 GCTGAATTGGAGCTTTAGC
64178905 CATACAAGGA
Statistics
Matches: 211, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
218 211 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.42
Consensus pattern (218 bp):
TGGTGGACTCGGTTCAGCTTCATTGTTTAGTTCCAGCGTTGGTATCATCTGGTATCTCAATACTT
GCTGCATTTTCCTTCAATCATATCTTGATTCATTAGAAAGATTGGTTATTTGTGAGATTGTTTTT
TCTTATATCCTTTGCTTCTGTGTTGATGTAAGATTAGGGAATGACAAATCTTTGGGAATGCCACT
GCTGAATTGGAGCTTTAGCTATT
Found at i:64185359 original size:26 final size:27
Alignment explanation
Indices: 64185318--64185369 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
64185308 ATTTGATAAA
* * *
64185318 TTTTAAATTCATTTTCATTTTTTTAAT
1 TTTTAAATTCACTTTCACTATTTTAAT
64185345 TTTTAAATT-ACTTTCACTATTTTAA
1 TTTTAAATTCACTTTCACTATTTTAA
64185370 ATATAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTTAAATTCACTTTCACTATTTTAAT
Found at i:64185906 original size:3 final size:3
Alignment explanation
Indices: 64185898--64185923 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
64185888 TCTTCCATGG
64185898 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
64185924 ACTCTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:64188735 original size:15 final size:15
Alignment explanation
Indices: 64188715--64188744 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64188705 TGGAACAACT
64188715 TTGGGATGGACATCA
1 TTGGGATGGACATCA
64188730 TTGGGATGGACATCA
1 TTGGGATGGACATCA
64188745 GGTATGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (15 bp):
TTGGGATGGACATCA
Found at i:64190430 original size:426 final size:424
Alignment explanation
Indices: 64189402--64190541 Score: 1285
Period size: 426 Copynumber: 2.6 Consensus size: 424
64189392 AGTGGCATCA
* * * * * *
64189402 TTTGATCTATTAATTGTGAGTTAATTTTGACATCCAATACATCAAATATGAATTTTTATTTTTCT
1 TTTGATTTATTAATTGTGGGTGAATTTTCACA-CCGATACATCAAATATAAATTTTTATTTTTCT
* * *
64189467 -TAGTACTATAATTATTTATTTCCTTTTTCATTTCTTACAGCTTAAAGTAAGTAGTTAATGCTTA
65 ATAGTATTATAATTATTTATTTCC-TTTTCATTTTTTAC--C----AG---GTAGTTGATGCTTA
* * *
64189531 AAAGTAATACAAATATTGTTTCTATACAGGAGCTTGTTAATTTAAGGGAAATTTACGTTGC-A-G
120 AAAGTAATAC-ACTATTTTTTCTATACAGGA-CTTGTTAATTTAA-GGAAATTAACGTT-CAATG
* * * ** * *
64189594 AATGCAATAATTTAAGGAAGATATGTAATCTTTCGAGAGCCATCAACCTTGAATCCCTTGATTGC
181 AGTGC-GTAATTTAAGGAAAATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGC
* * * * *
64189659 ACTGACTGTCAAAGTTTGGTTGAACTTGGGAATGAAGGTGATCGTACGGTATGCGTTTTCATACT
245 ACTAACTGTAAAAGTTTGGTTGAACTTGGGAACGAAGATGATCGTACGGTATGCATTTTCATACT
64189724 TTTCTTCAAAAAATATGATTTATAATTTGATGTATCAAATATTCATATAATAACATTTTATTTAG
310 TTTCTTCAAAAAATA-GA-TTATAATTTGATGTATCAAATATTCATATAATAACATTTTATTTAG
*
64189789 TCTTTAAAAAATAAATATAAAATAATTTATTTTATTTAGATAAGTGACATCG
373 TCTTTAAAAAATAAATATAAAATAATTTATTTTATTTAGATAAGTGAAATCG
* * * * * *
64189841 TTTAATTTATTACTTGTGGGAGAATTTTCACGCCGGATACATTAAATATAAATTTTTATTTTTGT
1 TTTGATTTATTAATTGTGGGTGAATTTTCACACC-GATACATCAAATATAAATTTTTATTTTTCT
* * * ** *
64189906 ATAGTATTATAATTATTTCTTTCCTTTCCATTTTTTACTAAATAGTTGATGTTTAAAAGTAATAC
65 ATAGTATTATAATTATTTATTTCCTTTTCATTTTTTACCAGGTAGTTGATGCTTAAAAGTAATAC
* * * **
64189971 ACTTATTTTTTCTATACAGGATTTCGTTAATTTAAGGCAAATTGAC-TTCAATGGGTGCGTGAGC
130 AC-TATTTTTTCTATACAGGACTT-GTTAATTTAAGG-AAATTAACGTTCAATGAGTGCGT-AAT
*
64190035 TTAAGGAAAATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCTCTAACTGTAA
191 TTAAGGAAAATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTGTAA
* * * * * * *
64190100 AAGTTTGGTTGAACTTTGGAACGGAGATGATTGTATGGTATGTATTTTCATACTTTTTTTTGAAA
256 AAGTTTGGTTGAACTTGGGAACGAAGATGATCGTACGGTATGCATTTTCATAC-TTTTCTTCAAA
* * *
64190165 AAA-A-A-TATATTTTGATGTAT-AAATATTCATATGATAACATTTTATTTAAAGTTTTTAAAAA
320 AAATAGATTATAATTTGATGTATCAAATATTCATATAATAACATTTTATTT--AGTCTTTAAAAA
* * *
64190226 ATAAATATAAAATATTTTATTTTATTTAGATGAGTGAAATTG
383 ATAAATATAAAATAATTTATTTTATTTAGATAAGTGAAATCG
* * *
64190268 TTTGATTTATTAATTGTGGGTGCATTTTCACACCGATACGTCAAATATAAATTTTTATTTTTTTA
1 TTTGATTTATTAATTGTGGGTGAATTTTCACACCGATACATCAAATATAAATTTTTATTTTTCTA
* *
64190333 TAGTATTATAATTATTTATTTCCTTTTCATTTTTTACCAGGTAGCTGATGCTTGAAAGTAATACA
66 TAGTATTATAATTATTTATTTCCTTTTCATTTTTTACCAGGTAGTTGATGCTTAAAAGTAATACA
* * * * *
64190398 GCTATTTTTTCTGTACAGGACCTTGATAATTTAACGGTAATTAACGTTTCAA--ATTGTAGTAAT
131 -CTATTTTTTCTATACAGGA-CTTGTTAATTTAA-GGAAATTAACG-TTCAATGAGTG-CGTAAT
* * *
64190461 TTAA-GAAAGATGCCTGATCTTTCAAGAGCCATCAACCTTGAATTCCTTGATTGCACTAACTGTA
191 TTAAGGAAA-ATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTGTA
*
64190525 AAAGTCTGGTTGAACTT
255 AAAGTTTGGTTGAACTT
64190542 CCTTGCCTCG
Statistics
Matches: 597, Mismatches: 86, Indels: 49
0.82 0.12 0.07
Matches are distributed among these distances:
425 30 0.05
426 205 0.34
427 85 0.14
428 7 0.01
429 9 0.02
430 163 0.27
431 12 0.02
433 1 0.00
438 2 0.00
439 62 0.10
440 21 0.04
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (424 bp):
TTTGATTTATTAATTGTGGGTGAATTTTCACACCGATACATCAAATATAAATTTTTATTTTTCTA
TAGTATTATAATTATTTATTTCCTTTTCATTTTTTACCAGGTAGTTGATGCTTAAAAGTAATACA
CTATTTTTTCTATACAGGACTTGTTAATTTAAGGAAATTAACGTTCAATGAGTGCGTAATTTAAG
GAAAATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTGTAAAAGTT
TGGTTGAACTTGGGAACGAAGATGATCGTACGGTATGCATTTTCATACTTTTCTTCAAAAAATAG
ATTATAATTTGATGTATCAAATATTCATATAATAACATTTTATTTAGTCTTTAAAAAATAAATAT
AAAATAATTTATTTTATTTAGATAAGTGAAATCG
Found at i:64209762 original size:13 final size:13
Alignment explanation
Indices: 64209717--64209782 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
64209707 ACCTGAACCA
64209717 TAAACCCTAAACTC
1 TAAA-CCTAAACTC
*
64209731 TAAATCCTTGAACTC
1 TAAA-CC-TAAACTC
*
64209746 TAAACCTAAACTT
1 TAAACCTAAACTC
* *
64209759 TAAACCTCAACAC
1 TAAACCTAAACTC
*
64209772 TAAACTTAAAC
1 TAAACCTAAAC
64209783 CTTAAATCTC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
13 24 0.57
14 8 0.19
15 10 0.24
ACGTcount: A:0.44, C:0.29, G:0.02, T:0.26
Consensus pattern (13 bp):
TAAACCTAAACTC
Found at i:64209781 original size:26 final size:26
Alignment explanation
Indices: 64209745--64209794 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
64209735 TCCTTGAACT
*
64209745 CTAAACCTAAACTTTAAACCTCAACA
1 CTAAACCTAAACCTTAAACCTCAACA
* *
64209771 CTAAACTTAAACCTTAAATCTCAA
1 CTAAACCTAAACCTTAAACCTCAA
64209795 ACCCAAATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (26 bp):
CTAAACCTAAACCTTAAACCTCAACA
Found at i:64210004 original size:17 final size:18
Alignment explanation
Indices: 64209982--64210017 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
64209972 TTTGTTTATA
64209982 ATTTTAAA-AAATTAATT
1 ATTTTAAATAAATTAATT
*
64209999 ATTTTAAATAATTTAATT
1 ATTTTAAATAAATTAATT
64210017 A
1 A
64210018 AAGTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTTTAAATAAATTAATT
Found at i:64230142 original size:35 final size:35
Alignment explanation
Indices: 64230096--64230165 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
64230086 ACTTATTATC
64230096 ATCAAACCAATTGCTTTGTCACTTAAATTAATGTA
1 ATCAAACCAATTGCTTTGTCACTTAAATTAATGTA
*
64230131 ATCAAAGCAATTGCTTTGTCACTTAAATTAATGTA
1 ATCAAACCAATTGCTTTGTCACTTAAATTAATGTA
64230166 TTTGATTAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (35 bp):
ATCAAACCAATTGCTTTGTCACTTAAATTAATGTA
Found at i:64231883 original size:19 final size:20
Alignment explanation
Indices: 64231849--64231890 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
64231839 ATCCTGATTC
*
64231849 TAAAACATTTAAAAAAATTA
1 TAAAACATTAAAAAAAATTA
64231869 TAAAA-ATTAAAAAAAATTA
1 TAAAACATTAAAAAAAATTA
64231888 TAA
1 TAA
64231891 TGAATTTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAAACATTAAAAAAAATTA
Found at i:64233033 original size:61 final size:64
Alignment explanation
Indices: 64232956--64233081 Score: 222
Period size: 61 Copynumber: 2.0 Consensus size: 64
64232946 AAGAAGTTGT
*
64232956 ACAAGTCCAAATGATATCATGGTAGAGCCAA-GTACATGAGAC-AA-GTGCACTTTATTTTATG
1 ACAAATCCAAATGATATCATGGTAGAGCCAATGTACATGAGACAAAGGTGCACTTTATTTTATG
64233017 ACAAATCCAAATGATATCATGGTAGAGCCAATGTACATGAGACAAAGGTGCACTTTATTTTATG
1 ACAAATCCAAATGATATCATGGTAGAGCCAATGTACATGAGACAAAGGTGCACTTTATTTTATG
64233081 A
1 A
64233082 TGCATGTACT
Statistics
Matches: 61, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
61 30 0.49
62 11 0.18
63 2 0.03
64 18 0.30
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (64 bp):
ACAAATCCAAATGATATCATGGTAGAGCCAATGTACATGAGACAAAGGTGCACTTTATTTTATG
Found at i:64248962 original size:40 final size:40
Alignment explanation
Indices: 64248895--64248971 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
64248885 AAGTCTGCTT
* * *
64248895 ATGTGTGAGCTTGCTTTTTGTTGTAATCTGTGATTTTCTC
1 ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTTCTC
*
64248935 ATGTGTGAGATTGGTTTGTGTTATAATCTGTGATTTT
1 ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTT
64248972 ATCTTGATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.16, C:0.08, G:0.25, T:0.52
Consensus pattern (40 bp):
ATGTGTGAGATTGCTTTGTGTTATAATCTGTGATTTTCTC
Found at i:64274145 original size:18 final size:18
Alignment explanation
Indices: 64274124--64274198 Score: 87
Period size: 18 Copynumber: 4.2 Consensus size: 18
64274114 GAACAGTACT
*
64274124 GTATACATAAATAGTGTC
1 GTATACATAAATAGTGCC
* * *
64274142 GTATACGTGAATAGTACC
1 GTATACATAAATAGTGCC
*
64274160 ATATACATAAATAGTGCC
1 GTATACATAAATAGTGCC
* *
64274178 GTATACGTAAATAGTACC
1 GTATACATAAATAGTGCC
64274196 GTA
1 GTA
64274199 GACGGTCGTA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (18 bp):
GTATACATAAATAGTGCC
Found at i:64274158 original size:36 final size:36
Alignment explanation
Indices: 64274106--64274195 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
64274096 CCCAACTACT
* ** *
64274106 GTATACGTGAACAGTACTGTATACATAAATAGTGTC
1 GTATACGTGAATAGTACCATATACATAAATAGTGCC
64274142 GTATACGTGAATAGTACCATATACATAAATAGTGCC
1 GTATACGTGAATAGTACCATATACATAAATAGTGCC
*
64274178 GTATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
64274196 GTAGACGGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACCATATACATAAATAGTGCC
Found at i:64277683 original size:189 final size:185
Alignment explanation
Indices: 64277477--64277842 Score: 565
Period size: 189 Copynumber: 2.0 Consensus size: 185
64277467 TAATTGCCCA
64277477 ATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACA-AATTTAAACTTATCTCGCACTCAAATTG
1 ATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAGAA-TTAAACTTATCTCGCACTCAAATTG
*
64277541 AAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGGA-CTTAAATATCAGTGGCTCAGC
65 AAGAAGTGTCCTTGCC-TTCGACTCTCTATGTAATCTTCA-GATCTTAAATATCAGTGGCTCAGC
* * *
64277605 GGGCAAAAATGTATCGATCAAGTTGGATTCCCTTCGTAAACTGAATCTTAGTGAATGCTCG
128 AGGAAAAAATGTATCGATCAAGTTGGAATCCC-T--TAAACTGAATCTTAGTGAATGCTCG
* * * *
64277666 ATGATCAAATTTCCAGAAATCCCAAGAAGCTTAATAGAATTAAATTTATCTGGCACTCAAATTGA
1 ATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAGAATTAAACTTATCTCGCACTCAAATTGA
* *
64277731 AGAAGTGTCCTTGCCTTCGACTCTCTATGTAATCTTCAGATCTTAAATATGAGTGGCTCAGCAGT
66 AGAAGTGTCCTTGCCTTCGACTCTCTATGTAATCTTCAGATCTTAAATATCAGTGGCTCAGCAGG
*
64277796 AAAAAATGTATCGATCAAGTTGGAATCCCTTAAACTGGATCTTAGTG
131 AAAAAATGTATCGATCAAGTTGGAATCCCTTAAACTGAATCTTAGTG
64277843 GTTGCCCAAT
Statistics
Matches: 164, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
185 16 0.10
187 3 0.02
188 71 0.43
189 72 0.44
190 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (185 bp):
ATGATCAAATTTCCAGAAATCCCAAAAAGCTTAACAGAATTAAACTTATCTCGCACTCAAATTGA
AGAAGTGTCCTTGCCTTCGACTCTCTATGTAATCTTCAGATCTTAAATATCAGTGGCTCAGCAGG
AAAAAATGTATCGATCAAGTTGGAATCCCTTAAACTGAATCTTAGTGAATGCTCG
Found at i:64281036 original size:3 final size:3
Alignment explanation
Indices: 64281028--64281056 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
64281018 AACTGACTTG
64281028 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
64281057 TTTGTAACTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:64282764 original size:8 final size:8
Alignment explanation
Indices: 64282751--64282777 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
64282741 CTGCTACATT
64282751 TGTGTAAA
1 TGTGTAAA
64282759 TGTGTAAA
1 TGTGTAAA
64282767 TGTGTAAA
1 TGTGTAAA
64282775 TGT
1 TGT
64282778 TAATGCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (8 bp):
TGTGTAAA
Found at i:64283619 original size:87 final size:82
Alignment explanation
Indices: 64283465--64283634 Score: 268
Period size: 87 Copynumber: 2.0 Consensus size: 82
64283455 GTTTTAGTCT
*
64283465 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
1 CCCATTGGAAGACCTTGACTTGGAAATTAAAACACCCATCATCATCATCGTCATTTGGAACAAGT
*
64283530 TTTCTTGTTGGTCAAAA
66 TTTCTTGCTGGTCAAAA
*
64283547 CCCATTGGAAGACCTTGACTTGGAAATTAATTAACACCCATCATCATCATCCTCGTCATTTGGAG
1 CCCATTGGAAGACCTTGACTTGGAAATTAA--AACACCCATCATCATCA---TCGTCATTTGGAA
64283612 CAAGTTTTCTTGCTGGTCAAAA
61 CAAGTTTTCTTGCTGGTCAAAA
64283634 C
1 C
64283635 TCCCTTTTAA
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
82 30 0.38
84 16 0.20
87 34 0.43
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (82 bp):
CCCATTGGAAGACCTTGACTTGGAAATTAAAACACCCATCATCATCATCGTCATTTGGAACAAGT
TTTCTTGCTGGTCAAAA
Found at i:64284943 original size:20 final size:20
Alignment explanation
Indices: 64284905--64284943 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
64284895 AATACCCAAA
*
64284905 CAATAGCAATAAAATATTAG
1 CAATAGCAATAAAAGATTAG
64284925 CAATA-CAATAATAAGATTA
1 CAATAGCAATAA-AAGATTA
64284944 TAACAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (20 bp):
CAATAGCAATAAAAGATTAG
Found at i:64289530 original size:17 final size:17
Alignment explanation
Indices: 64289508--64289541 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64289498 ATCCACTAAT
*
64289508 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
64289525 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
64289542 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:64294159 original size:17 final size:17
Alignment explanation
Indices: 64294137--64294170 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64294127 ATCCACTAAT
*
64294137 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
64294154 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
64294171 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:64303323 original size:27 final size:27
Alignment explanation
Indices: 64303291--64303346 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
64303281 AGAGTAAGTG
64303291 TTAATTGTATTTATATTCTTTTTATTC
1 TTAATTGTATTTATATTCTTTTTATTC
64303318 TTAATTGTATTTATATTCTTTTTATTC
1 TTAATTGTATTTATATTCTTTTTATTC
64303345 TT
1 TT
64303347 TCACATGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.68
Consensus pattern (27 bp):
TTAATTGTATTTATATTCTTTTTATTC
Found at i:64305877 original size:189 final size:189
Alignment explanation
Indices: 64305545--64306063 Score: 831
Period size: 189 Copynumber: 2.7 Consensus size: 189
64305535 GTGGTTGCCC
* * *
64305545 AATTGAAGAAGTGTCGTTGCCTTTCGACCCCCTATGTAATCTTCAGCACTTAAAAATGAGTGGCT
1 AATTGAAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
* * *
64305610 CAGCGGTCAAAAATGTATCGATCCAGTTGGAATCCCTTCGCAAACTGAATCTTAGTGGATGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
*
64305675 ATGGTCAAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
131 ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
** *
64305734 AATTGAAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGCTTTTAAATATGAGTAGCT
1 AATTGAAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
*
64305799 CAGCGGTCAAAAATGTATCGATCAAATTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
* * *
64305864 CTGGTCGAATTTCCAGAAATCCCGGGAAGCTTAATAGAATTAAACTTATCTGGCACTCA
131 ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
*
64305923 AATTGAAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTAAGCACTTAAATATGAGTGGCT
1 AATTGAAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
* * * * * * *
64305988 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCATTATCCGGATCTTAGTGGTTGTCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
*
64306053 AAGGTCGAATT
131 ATGGTCGAATT
64306064 ACTCTCAGAT
Statistics
Matches: 302, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
189 302 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (189 bp):
AATTGAAGAAGTGTCGTTGCCTTTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTGGCT
CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
Found at i:64317101 original size:9 final size:9
Alignment explanation
Indices: 64317083--64317136 Score: 99
Period size: 9 Copynumber: 6.0 Consensus size: 9
64317073 GGATGCAGAG
64317083 AGATGCTAC
1 AGATGCTAC
*
64317092 AGATGATAC
1 AGATGCTAC
64317101 AGATGCTAC
1 AGATGCTAC
64317110 AGATGCTAC
1 AGATGCTAC
64317119 AGATGCTAC
1 AGATGCTAC
64317128 AGATGCTAC
1 AGATGCTAC
64317137 TGAAAAGAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (9 bp):
AGATGCTAC
Found at i:64324850 original size:21 final size:21
Alignment explanation
Indices: 64324810--64324852 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
64324800 GTTTTATGGC
*
64324810 TTTTAAATATTATTTGATAAA
1 TTTTAAATATTATTTCATAAA
64324831 TTTTAAAT-TTATTTTCATAAA
1 TTTTAAATATTA-TTTCATAAA
64324852 T
1 T
64324853 ATTTCTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTAAATATTATTTCATAAA
Found at i:64325469 original size:3 final size:3
Alignment explanation
Indices: 64325461--64325495 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
64325451 TCTTCCATGG
*
64325461 CTT CTT CTT CTT CTT CTT CTT CTT CTT ATT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
64325496 ACTCTAATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:64326203 original size:20 final size:20
Alignment explanation
Indices: 64326178--64326227 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
64326168 TGGCTTAAAA
64326178 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
64326198 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
64326215 GTGGTAGTGGATT
1 TTGGTAGTGGATT
64326228 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:64330832 original size:20 final size:20
Alignment explanation
Indices: 64330807--64330856 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
64330797 TGGCTTAAAA
64330807 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
64330827 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
64330844 GTGGTAGTGGATT
1 TTGGTAGTGGATT
64330857 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:64334214 original size:276 final size:277
Alignment explanation
Indices: 64333720--64334279 Score: 1023
Period size: 276 Copynumber: 2.0 Consensus size: 277
64333710 GTAGATGATA
* *
64333720 CTTAAAAGTGATATAATTATTTTTATATGTTTTTCTTTTGCACAGAACCTTGCTAATTTAAGGGA
1 CTTAAAAGTGATATAATTATTCTTATATATTTTTCTTTTGCACAGAACCTTGCTAATTTAAGGGA
*
64333785 AATTGACGTTTCATATTGCAAAAATTTAAGGAAGATGCCTAGTCTTTCAGGAGCCATCAACCTTG
66 AATTGACATTTCATATTGCAAAAATTTAAGGAAGATGCCTAGTCTTTCAGGAGCCATCAACCTTG
*
64333850 AACTCCTTCGTTGCATTGACTGTGAAAGTTTGGTTGAATTTTGGAATAAAGATGATCATACAGTA
131 AACTCCTTCGTTGCATTGACTGTGAAAGTTTGGTTGAACTTTGGAATAAAGATGATCATACAGTA
64333915 TGTGTACTTTCATACTATTTTCATTTAAGAATTTTTTAAGA-AAAAAAATTATAATTTAGTGTAT
196 TGTGTACTTTCATACTATTTTCATTTAAGAATTTTTTAAGAGAAAAAAATTATAATTTAGTGTAT
64333979 CAAATAATCATAAAGTT
261 CAAATAATCATAAAGTT
64333996 CTTAAAAGTGATATAATTATTCTTATATATTTTTCTTTTGCACAGAACCTTGCTAATTTAAGGGA
1 CTTAAAAGTGATATAATTATTCTTATATATTTTTCTTTTGCACAGAACCTTGCTAATTTAAGGGA
*
64334061 AATTGACATTTCATATTGCAAGAATTTAAGGAAGATGCCTAGTCTTTCAGGAGCCATCAACCTTG
66 AATTGACATTTCATATTGCAAAAATTTAAGGAAGATGCCTAGTCTTTCAGGAGCCATCAACCTTG
** *
64334126 AACTCCTTCGTTGCATTGGTTGTGAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATACAGTA
131 AACTCCTTCGTTGCATTGACTGTGAAAGTTTGGTTGAACTTTGGAATAAAGATGATCATACAGTA
*
64334191 TGTGTACTTTCATACTTTTTTCATTTAAGAATTTTTTAAGAGAAAAAAATTATAATTTAGTGTAT
196 TGTGTACTTTCATACTATTTTCATTTAAGAATTTTTTAAGAGAAAAAAATTATAATTTAGTGTAT
64334256 CAAATAATCATAAAGTT
261 CAAATAATCATAAAGTT
*
64334273 TTTAAAA
1 CTTAAAA
64334280 AATAAATATG
Statistics
Matches: 273, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
276 227 0.83
277 46 0.17
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (277 bp):
CTTAAAAGTGATATAATTATTCTTATATATTTTTCTTTTGCACAGAACCTTGCTAATTTAAGGGA
AATTGACATTTCATATTGCAAAAATTTAAGGAAGATGCCTAGTCTTTCAGGAGCCATCAACCTTG
AACTCCTTCGTTGCATTGACTGTGAAAGTTTGGTTGAACTTTGGAATAAAGATGATCATACAGTA
TGTGTACTTTCATACTATTTTCATTTAAGAATTTTTTAAGAGAAAAAAATTATAATTTAGTGTAT
CAAATAATCATAAAGTT
Found at i:64335011 original size:409 final size:413
Alignment explanation
Indices: 64334436--64335852 Score: 1564
Period size: 411 Copynumber: 3.4 Consensus size: 413
64334426 TTAAAGTAAG
** * * **
64334436 TAGTTGATGCTTAAAAGTAATACAAATATTGTTTCTATACAGGAGCTTGTTAATTTAAGGAAAAT
1 TAGTTGATGCTTAAAAGTAATACACTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGAAAAT
* ** * ** ** *
64334501 TTACGTT-GCA-GACTGCAAT-AATTTAAGGAAGATATGTAATCTTTCGAGAGCCATCAACCTTG
66 TAAC-TTCG-ATGGGTGC-GTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTTG
* * * * * *
64334563 AATCCCTTGATTGCTCTT-ACTGTAAAAGTTTGGTTGAACTTGGGAATGAAGGTGATCGTACGGT
128 AATACCTTGATTGCT-TTAACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTATGGT
* * * *
64334627 ATGCATTTTCATACTTTTCTTCGAAAAATATGATTTATAATTTGATGTATCAAATATTCATATAA
192 ATGTATTTTCATACTTTT-TT-GAAAAATATAATTTATATTTTGATGTAT-AAATATTCATATGA
* *
64334692 TAACATTTTATTTAAAGTCTTTAAAAAATAAATATAAAAGAATTTATATTATTTAGATAAGTGAC
254 TAACATTTTATTTAAAGT-TTTAAAAAATAAATATAAAAGATTTTATTTTATTTAGATAAGTGAC
* *
64334757 ATCGTTTAATTTATTAATTGTGGGAGAATTT-A-A-T-T-T-T-T-ATTTCTGTATAGTATTATA
318 ATCGTTTGATTTATTAATTGTGGGTGAATTTCACACTATATATATAATTTCTGTATAGTATTATA
64334814 ATTATTTCTTTCCTTTCCATTTTTTACTAAA
383 ATTATTTCTTTCCTTTCCATTTTTTACTAAA
64334845 TAGTTGATGCTTAAAAGTAATACACTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGAAAAT
1 TAGTTGATGCTTAAAAGTAATACACTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGAAAAT
*
64334910 TGACTTCGATGGGTGCGTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTTGAAT
66 TAACTTCGATGGGTGCGTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTTGAAT
64334975 ACCTTGATTGCTTTAACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTATGGTATGT
131 ACCTTGATTGCTTTAACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTATGGTATGT
* * * **
64335040 ATTTTCATACTTCTTTTTAAAATTTTTTTTTATATTTTGATGTATAAATATTCATATGATAACAT
196 ATTTTCATACTT-TTTTGAAAAATATAATTTATATTTTGATGTATAAATATTCATATGATAACAT
*
64335105 TTTATTTAAA---TT------T---TATAAAAGATTTTATTTTATTTAGATAAGTGACCTCGTTT
260 TTTATTTAAAGTTTTAAAAAATAAATATAAAAGATTTTATTTTATTTAGATAAGTGACATCGTTT
* *
64335158 GATTTATTAATTGTGGGTGAATTTTCACACTCGATACATCAAATATAAATTTTTTTATAGTATTA
325 GATTTATTAATTGTGGGTGAA-TTTCACACT--AT--AT---ATAT-AATTTCTGTATAGTATTA
*
64335223 TAATTATTTCTTTCCTTTCTATTTTTTACTAAA
381 TAATTATTTCTTTCCTTTCCATTTTTTACTAAA
* * **
64335256 TAGTTGATGCTTAAAAGTAATACACTTAGTTTTTCTGTACAGGATTTCGTTAATTTAAGGGGAAT
1 TAGTTGATGCTTAAAAGTAATACACTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGAAAAT
* *
64335321 TAACCTCAATGGGTGCGTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTTGAAT
66 TAACTTCGATGGGTGCGTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTTGAAT
64335386 ACCTT-AGTTGCTTTAACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTATGGTATG
131 ACCTTGA-TTGCTTTAACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTATGGTATG
* *
64335450 TATTTTCATACTTTTTTTTGAAAAACA-AAATTATATTTTGATGTATAAATATTCATATGATAAC
195 TATTTTCATAC--TTTTTTGAAAAATATAATTTATATTTTGATGTATAAATATTCATATGATAAC
* *
64335514 ATTTTATTTAAAGTTTTTAAAAAATAAATATAAAATATTTTATTTTATTTAGATAAGTGACATTG
258 ATTTTATTTAAAG-TTTTAAAAAATAAATATAAAAGATTTTATTTTATTTAGATAAGTGACATCG
* * * *
64335579 TTTGATTTATTCATTGTGGGTGAATTTTCACACCGATACGTCAAATATAAATTTTTATTTTTTTA
322 TTTGATTTATTAATTGTGGGTGAA-TTTCACA-C--TA--T---ATAT--A---TAATTTCTGTA
* * * *
64335644 TAGTATTATAATTATTTATTTCCTTTTCATTTTTTACCAAG
373 TAGTATTATAATTATTTCTTTCCTTTCCATTTTTTACTAAA
* * ** **
64335685 TAGCTGATGCTTGAAAGTAATACAGC-TATTTTTTCTGTACAGGACCTTGTTAATTTAAGGGTAA
1 TAGTTGATGCTTAAAAGTAATACA-CTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGAAAA
* * * ** * * * *
64335749 TTAACCTTTCAAAT-TGT-AGT-AATTTAAGAAAGATGCCTGATCTTTCAAGAGCCGTCAACCTT
65 TTAA-C-TTC-GATGGGTGCGTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTT
** * *
64335811 GAATTA-CTTGATTGCACTAACTGTAACAGTCTGGTTGAACTT
127 GAA-TACCTTGATTGCTTTAACTGTAAAAGTTTGGTTGAACTT
64335853 CCTTGCCTCG
Statistics
Matches: 871, Mismatches: 82, Indels: 90
0.84 0.08 0.09
Matches are distributed among these distances:
394 56 0.06
395 3 0.00
396 1 0.00
397 2 0.00
398 1 0.00
401 1 0.00
403 2 0.00
404 1 0.00
407 29 0.03
408 29 0.03
409 178 0.20
410 3 0.00
411 289 0.33
412 8 0.01
413 2 0.00
415 2 0.00
421 1 0.00
424 65 0.07
425 4 0.00
427 3 0.00
428 3 0.00
429 173 0.20
430 8 0.01
431 4 0.00
432 3 0.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (413 bp):
TAGTTGATGCTTAAAAGTAATACACTTATTTTTTCTGTACAGGATTTTGTTAATTTAAGGAAAAT
TAACTTCGATGGGTGCGTGAGCTTAAGGAAGATACCTAATCTTTCAAGAGCCATCAACCTTGAAT
ACCTTGATTGCTTTAACTGTAAAAGTTTGGTTGAACTTTGGAATGGAGATGATTGTATGGTATGT
ATTTTCATACTTTTTTGAAAAATATAATTTATATTTTGATGTATAAATATTCATATGATAACATT
TTATTTAAAGTTTTAAAAAATAAATATAAAAGATTTTATTTTATTTAGATAAGTGACATCGTTTG
ATTTATTAATTGTGGGTGAATTTCACACTATATATATAATTTCTGTATAGTATTATAATTATTTC
TTTCCTTTCCATTTTTTACTAAA
Found at i:64348371 original size:189 final size:188
Alignment explanation
Indices: 64348141--64348966 Score: 1214
Period size: 189 Copynumber: 4.4 Consensus size: 188
64348131 CAATATTTCA
* *
64348141 AAGTTGGAATTCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATC-AATTTCCAGAAATCCC
*
64348206 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTCGACT
*
64348271 CCCTATATAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
130 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
*
64348330 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTCAATTTCCCGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGA-TCAATTTCCAGAAATCCC
* * *
64348395 AGGAAGCTTAACAGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTCGACT
64348460 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
130 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
*
64348519 AAGTTGGAATCCCTTCGTCAATTGGACCTTAGTGATTGCCCAATGATTCAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGA-TCAATTTCCAGAAATCCC
** *
64348584 CGGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAAAAGTGTCATTGCCTTTCGACT
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTCGACT
* * * *
64348649 CCCTATGTAATCTTCGGAATTTAAATATGAGGGGCTCAAAGGTAAAAGATGTATCGATC
130 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
* * *
64348708 AAGTTGGAATCCCTTCGTAAATTGAATCTTAGTAATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATC-AATTTCCAGAAATCCC
*
64348773 AAGAAGCTTAATAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCC-TTCGGAC
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTC-GAC
* * * * * * *
64348837 TCACTATGTAATCTTCAGG-ACTTAGATATGAGTG-GCTC-TGCAGT-CAAAACTGTATCAATC
129 TCCCTATGTAATCTTC-GGAATTTAAATATGAG-GAGCTCAAG-GGTAAAAAAC-GTATCGATC
* * * * * *
64348897 AAGTTGGAATCTCTTCGT-TATCTGGATCTTAGTGGTTGCCCAATGGTCGAATTTCCAGAATTTC
1 AAGTTGGAATCCCTTCGTCAAT-TGGATCTTAGTGATTGCCCAATGATC-AATTTCCAGAAATCC
64348961 CAAGAA
64 CAAGAA
64348967 TTCCATGGGA
Statistics
Matches: 586, Mismatches: 43, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
188 10 0.02
189 571 0.97
190 5 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (188 bp):
AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATCAATTTCCAGAAATCCCA
AGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCCTTTCGACTC
CCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
Done.