Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 22 of 218
Found at i:7280233 original size:19 final size:19
Alignment explanation
Indices: 7280183--7280220 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7280173 TAAAATAGTA
7280183 AAAAATA-TAAAATTTTAT
1 AAAAATATTAAAATTTTAT
7280201 AAAAATATTAAAATTTTAT
1 AAAAATATTAAAATTTTAT
7280220 A
1 A
7280221 TAAACTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATATTAAAATTTTAT
Found at i:7281735 original size:31 final size:31
Alignment explanation
Indices: 7281691--7281749 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
7281681 TAAAATGATT
* *
7281691 ATTGAATTGTTTGAAAG-TTTTCATTTAAATC
1 ATTGAACTATTTGAAAGCTTTT-ATTTAAATC
7281722 ATTGAACTATTTGAAAGCTTTTATTTAA
1 ATTGAACTATTTGAAAGCTTTTATTTAA
7281750 GTTACTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTGAACTATTTGAAAGCTTTTATTTAAATC
Found at i:7296852 original size:18 final size:17
Alignment explanation
Indices: 7296819--7296857 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7296809 TTTTATAAAT
7296819 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7296837 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7296854 TGTG
1 TGTG
7296858 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7297112 original size:23 final size:23
Alignment explanation
Indices: 7297086--7297135 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
7297076 GTTATTGATT
* *
7297086 AGTGGTAGCTTCGGCTACATTTC
1 AGTGGTAGCTTCGGATACATATC
7297109 AGTGGTAGCTTCGGATACATATC
1 AGTGGTAGCTTCGGATACATATC
7297132 AGTG
1 AGTG
7297136 TGGCACTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGATACATATC
Found at i:7302369 original size:60 final size:58
Alignment explanation
Indices: 7302292--7302429 Score: 159
Period size: 60 Copynumber: 2.3 Consensus size: 58
7302282 AAAAACCAAG
*
7302292 TTTAGGTACCAATTTGAACCAAGAAGCCAAGTTTAAATACCTAATTGGATCAAAATAAAC
1 TTTAGGTACCAATTTGAACCAA-AAGCCAAGTTCAAATACCTAATTGGATCAAAA-AAAC
* * *** * **
7302352 TTTAAGTACCAAATTGAATGTTAAAGCCAAGTTCAAGTACCTAATTGGATTGAAAAAAC
1 TTTAGGTACCAATTTGAA-CCAAAAGCCAAGTTCAAATACCTAATTGGATCAAAAAAAC
*
7302411 CTTAGGTACCAATTTGAAC
1 TTTAGGTACCAATTTGAAC
7302430 TTTGAAGGCA
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
59 19 0.30
60 44 0.69
61 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.28
Consensus pattern (58 bp):
TTTAGGTACCAATTTGAACCAAAAGCCAAGTTCAAATACCTAATTGGATCAAAAAAAC
Found at i:7305527 original size:16 final size:16
Alignment explanation
Indices: 7305506--7305552 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
7305496 ATGATTTTAT
7305506 TCACCAATTGTTTAGA
1 TCACCAATTGTTTAGA
**
7305522 TCACCAATTGTTCGGA
1 TCACCAATTGTTTAGA
*
7305538 TCACCTATTAGTTTA
1 TCACCAATT-GTTTA
7305553 AGCCCAATCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (16 bp):
TCACCAATTGTTTAGA
Found at i:7308395 original size:19 final size:18
Alignment explanation
Indices: 7308363--7308398 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7308353 TATCAATTTA
7308363 ACAAACAAACAAAATAAT
1 ACAAACAAACAAAATAAT
*
7308381 ACAATACAAATAAAATAA
1 ACAA-ACAAACAAAATAA
7308399 GAATTAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAAACAAACAAAATAAT
Found at i:7309148 original size:15 final size:15
Alignment explanation
Indices: 7309125--7309168 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7309115 TTAGTTAACC
*
7309125 TTTAATTAATTATAA
1 TTTAATTAATTAAAA
*
7309140 TTTATTTAATTAAAA
1 TTTAATTAATTAAAA
**
7309155 TTCGATTAATTAAA
1 TTTAATTAATTAAA
7309169 CATAAATCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (15 bp):
TTTAATTAATTAAAA
Found at i:7311568 original size:53 final size:53
Alignment explanation
Indices: 7311479--7311597 Score: 204
Period size: 53 Copynumber: 2.3 Consensus size: 53
7311469 GGGGAGGTAT
* *
7311479 TCATTAGCCCAAACAAACATCCAAGCCATCGATAACAACACTACCAAAGTTGC
1 TCATCAGCCCAAACAAACATCCAAGCCATAGATAACAACACTACCAAAGTTGC
*
7311532 TCATCAGCCCAAACAAACATCCAAGCCATAGGTAACAACACTACCAAAGTTGC
1 TCATCAGCCCAAACAAACATCCAAGCCATAGATAACAACACTACCAAAGTTGC
7311585 TCATCAG-CCAAAC
1 TCATCAGCCCAAAC
7311598 CATTCGTTTA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
52 6 0.10
53 57 0.90
ACGTcount: A:0.41, C:0.33, G:0.10, T:0.16
Consensus pattern (53 bp):
TCATCAGCCCAAACAAACATCCAAGCCATAGATAACAACACTACCAAAGTTGC
Found at i:7317513 original size:13 final size:14
Alignment explanation
Indices: 7317495--7317523 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7317485 AATAACAACA
7317495 AAAAAAATTT-ATT
1 AAAAAAATTTCATT
7317508 AAAAAAATTTCATT
1 AAAAAAATTTCATT
7317522 AA
1 AA
7317524 TTGGAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAAAATTTCATT
Found at i:7318474 original size:16 final size:16
Alignment explanation
Indices: 7318453--7318486 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7318443 AAAGAGACTC
7318453 AAATTAGGTCTCAAGA
1 AAATTAGGTCTCAAGA
7318469 AAATTAGGTCTCAAGA
1 AAATTAGGTCTCAAGA
7318485 AA
1 AA
7318487 TGATAAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (16 bp):
AAATTAGGTCTCAAGA
Found at i:7320665 original size:25 final size:25
Alignment explanation
Indices: 7320631--7320681 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7320621 GGATACCCAA
*
7320631 CTTAGTTTTCTAAGTTCAATGTGGT
1 CTTAGTTTTCTAAGTTCAATATGGT
7320656 CTTAGTTTTCTAAGTTCAATATGGT
1 CTTAGTTTTCTAAGTTCAATATGGT
7320681 C
1 C
7320682 AAACAAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.47
Consensus pattern (25 bp):
CTTAGTTTTCTAAGTTCAATATGGT
Found at i:7323894 original size:21 final size:21
Alignment explanation
Indices: 7323870--7324010 Score: 95
Period size: 21 Copynumber: 6.8 Consensus size: 21
7323860 TGAGAACCCG
* * *
7323870 TAAGGGTTAAACGGAAGCTCA
1 TAAGAGTTAAACTGAAACTCA
* * * *
7323891 TAAGAGCTGAACGGAAACCCA
1 TAAGAGTTAAACTGAAACTCA
* * *
7323912 TAAGGGTTAAACTTAAGCTCA
1 TAAGAGTTAAACTGAAACTCA
* * *
7323933 AAAGAGCTAAACTGAAACCCA
1 TAAGAGTTAAACTGAAACTCA
* * *
7323954 GAAGGGTTAAACTAAAACTCA
1 TAAGAGTTAAACTGAAACTCA
* *
7323975 TATGAGTT-AACTGAAGCTCA
1 TAAGAGTTAAACTGAAACTCA
* *
7323995 TAAAAGCTAAACTGAA
1 TAAGAGTTAAACTGAA
7324011 TGCAAACACG
Statistics
Matches: 88, Mismatches: 31, Indels: 2
0.73 0.26 0.02
Matches are distributed among these distances:
20 15 0.17
21 73 0.83
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (21 bp):
TAAGAGTTAAACTGAAACTCA
Found at i:7323966 original size:42 final size:42
Alignment explanation
Indices: 7323854--7323966 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
7323844 GCACATAAAT
* *
7323854 GCTAAA-TGAGAACCC-GTAAGGGTTAAACGGAAGCTCATAAGA
1 GCTAAACTGA-AACCCAG-AAGGGTTAAACTGAAGCTCAAAAGA
* * * *
7323896 GCTGAACGGAAACCCATAAGGGTTAAACTTAAGCTCAAAAGA
1 GCTAAACTGAAACCCAGAAGGGTTAAACTGAAGCTCAAAAGA
7323938 GCTAAACTGAAACCCAGAAGGGTTAAACT
1 GCTAAACTGAAACCCAGAAGGGTTAAACT
7323967 AAAACTCATA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 58 0.97
43 2 0.03
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.17
Consensus pattern (42 bp):
GCTAAACTGAAACCCAGAAGGGTTAAACTGAAGCTCAAAAGA
Found at i:7335769 original size:14 final size:14
Alignment explanation
Indices: 7335747--7335776 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7335737 TATTGTTTAA
*
7335747 GACTTCTTAAGAGG
1 GACTGCTTAAGAGG
7335761 GACTGCTTAAGAGG
1 GACTGCTTAAGAGG
7335775 GA
1 GA
7335777 GCTAATCTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.23
Consensus pattern (14 bp):
GACTGCTTAAGAGG
Found at i:7349655 original size:17 final size:18
Alignment explanation
Indices: 7349630--7349668 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
7349620 AATTTTAATT
*
7349630 TTAACTTAATATTT-AAA
1 TTAACTTAAGATTTAAAA
*
7349647 TTAATTTAAGATTTAAAA
1 TTAACTTAAGATTTAAAA
7349665 TTAA
1 TTAA
7349669 AAATTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
TTAACTTAAGATTTAAAA
Found at i:7362736 original size:19 final size:18
Alignment explanation
Indices: 7362714--7362777 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 18
7362704 TGATAATCAA
7362714 TAAAAATTAGAAAAAATAT
1 TAAAAATTAGAAAAAA-AT
7362733 TAAAAATTAGAAAAAAAT
1 TAAAAATTAGAAAAAAAT
7362751 TATAAAATCATA-AAAAAAAT
1 TA-AAAAT--TAGAAAAAAAT
*
7362771 TATAAAT
1 TAAAAAT
7362778 ATATAGAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
18 4 0.10
19 25 0.61
20 10 0.24
21 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (18 bp):
TAAAAATTAGAAAAAAAT
Found at i:7362738 original size:20 final size:19
Alignment explanation
Indices: 7362715--7362786 Score: 67
Period size: 19 Copynumber: 3.6 Consensus size: 19
7362705 GATAATCAAT
7362715 AAAAATTAGAAAAAATATT-
1 AAAAATTAGAAAAAA-ATTA
7362734 AAAAATTAGAAAAAAATTA
1 AAAAATTAGAAAAAAATTA
*
7362753 TAAAATCATA-AAAAAAATTA
1 AAAAAT--TAGAAAAAAATTA
*
7362773 TAAATATATAGAAA
1 -AAAAAT-TAGAAA
7362787 TATAGAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
18 3 0.07
19 20 0.44
20 13 0.29
21 9 0.20
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.25
Consensus pattern (19 bp):
AAAAATTAGAAAAAAATTA
Found at i:7363065 original size:20 final size:20
Alignment explanation
Indices: 7363042--7363080 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7363032 TTAAATGGTC
7363042 TTTTTAATGCATT-TTATAAT
1 TTTTTAATG-ATTCTTATAAT
*
7363062 TTTTTTATGATTCTTATAA
1 TTTTTAATGATTCTTATAA
7363081 AATTTCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTTAATGATTCTTATAAT
Found at i:7363121 original size:10 final size:9
Alignment explanation
Indices: 7363089--7363124 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
7363079 AAAATTTCAC
7363089 AAATTTTTA
1 AAATTTTTA
7363098 AAATTTTTA
1 AAATTTTTA
7363107 AAATTTCTTA
1 AAATTT-TTA
*
7363117 CAATTTTT
1 AAATTTTT
7363125 TTTCTAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (9 bp):
AAATTTTTA
Found at i:7363737 original size:18 final size:19
Alignment explanation
Indices: 7363702--7363742 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7363692 TTTGAGATGG
*
7363702 TTATAGCAAAAATATTATA
1 TTATAACAAAAATATTATA
*
7363721 TTATAACAAAAA-CTTATA
1 TTATAACAAAAATATTATA
7363739 TTAT
1 TTAT
7363743 TTAAATCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (19 bp):
TTATAACAAAAATATTATA
Found at i:7365639 original size:20 final size:20
Alignment explanation
Indices: 7365569--7365641 Score: 58
Period size: 23 Copynumber: 3.4 Consensus size: 20
7365559 TTGTTATAAC
* *
7365569 TTTATAAAATATATAAATTATT
1 TTTATAATATA-AT-AATTTTT
*
7365591 TTTATAATATAAT-TTTTTT
1 TTTATAATATAATAATTTTT
7365610 AAGATTTATAATATAATAATTTTT
1 ----TTTATAATATAATAATTTTT
7365634 TTTATAAT
1 TTTATAAT
7365642 CATCCTAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
19 4 0.10
20 8 0.19
21 2 0.05
22 10 0.24
23 13 0.31
24 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (20 bp):
TTTATAATATAATAATTTTT
Found at i:7372780 original size:178 final size:178
Alignment explanation
Indices: 7372481--7373370 Score: 1762
Period size: 178 Copynumber: 5.0 Consensus size: 178
7372471 TGTATTTCTT
*
7372481 CCATTCTAGTGTTTCTATAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
1 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
7372546 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
66 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
7372611 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
131 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
7372659 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
1 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
7372724 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
66 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
7372789 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
131 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
*
7372837 CCATTCTAGTGTTTCTATAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
1 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
7372902 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
66 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
7372967 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
131 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
7373015 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
1 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
7373080 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
66 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
7373145 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
131 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
7373193 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
1 CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
7373258 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
66 ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
7373323 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
131 TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
7373371 TAATTTATCT
Statistics
Matches: 709, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 709 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (178 bp):
CCATTCTAGTGTTTCTAGAATTTCTACTTGGTTCTGTAAGAAAAATAGAAATATGAACGATTTTC
ATTCCTATTGGTATATAATTTGTACTTATATTATCCTCTTCTTCCTCTATTGGAGTATTTAAGGG
TAAAATTAAATTGTCATTTATATTTGTTCTAGCAATATTTTTAAAATA
Found at i:7374027 original size:31 final size:32
Alignment explanation
Indices: 7373991--7374055 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
7373981 CTTAGATAAT
7373991 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
7374022 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
7374054 TT
1 TT
7374056 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:7374633 original size:9 final size:9
Alignment explanation
Indices: 7374621--7374652 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7374611 AAAGAAGAAA
7374621 AAAAACAGC
1 AAAAACAGC
7374630 AAAAACAGC
1 AAAAACAGC
*
7374639 AAAAAAAGC
1 AAAAACAGC
7374648 AAAAA
1 AAAAA
7374653 GCGCAAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.75, C:0.16, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAACAGC
Found at i:7381974 original size:19 final size:19
Alignment explanation
Indices: 7381929--7381974 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7381919 ATAATTTTTT
7381929 ATATTATTACTAATATATA
1 ATATTATTACTAATATATA
* *
7381948 ATAATATTAACTAATTTA-A
1 ATATTATT-ACTAATATATA
7381967 ATATTATT
1 ATATTATT
7381975 TAAGTGCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTATTACTAATATATA
Found at i:7382094 original size:13 final size:13
Alignment explanation
Indices: 7382078--7382126 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
7382068 TTTAAACTAA
7382078 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
7382091 ACTTCTCAAAAAC
1 ACTTTTCAAAAGC
* *
7382104 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
7382117 ACTTTTCAAA
1 ACTTTTCAAA
7382127 GATAATGAAG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:7395732 original size:17 final size:17
Alignment explanation
Indices: 7395710--7395754 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
7395700 GTGAATCGGG
*
7395710 TTTCTATTTTTTTATAT
1 TTTCTATTTTTTGATAT
*
7395727 TTTCTATTCTTTTGATTT
1 TTTCTATT-TTTTGATAT
*
7395745 TTTTTATTTT
1 TTTCTATTTT
7395755 ATAAGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTCTATTTTTTGATAT
Found at i:7396399 original size:3 final size:3
Alignment explanation
Indices: 7396391--7396447 Score: 60
Period size: 3 Copynumber: 18.7 Consensus size: 3
7396381 TATTACTTGT
* * *
7396391 TTA TTA TTA TTA TTA TTA TTA TTA TCTA CTA TTA CTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* *
7396437 TGA TTG TTA TT
1 TTA TTA TTA TT
7396448 TTCATGTACA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
3 41 0.95
4 2 0.05
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:7409071 original size:134 final size:134
Alignment explanation
Indices: 7408688--7409705 Score: 1554
Period size: 134 Copynumber: 7.6 Consensus size: 134
7408678 GAAAAGCGGT
*
7408688 AGATCTTGTCTCCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
* *
7408753 GGCATGAAGTAGATTAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAGA
66 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
7408818 TAAC
131 TAAC
* * * *
7408822 AGATTTTTTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACAGAT-TTGTCTTAATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
* * * *
7408886 GGAATGAAATAGATCAGAGATAGCAGATCTTGCCTTCCTGTACTGGCAGCGAAGTAAATCAAAGA
66 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
7408951 TAAC
131 TAAC
* * * *
7408955 AGATCTTGACTTCCCATACTAGTGCCGAAGTAGATCGAAGATAACGAATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
*
7409020 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGAAGCGAAGTAGATCAAAGA
66 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
7409085 TAAC
131 TAAC
* *
7409089 AGATCTTGTCTTCGCATACTGGTGGCGAAGTAGATTGAAGATAACGGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
* *
7409154 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAATAGATCAAAGA
66 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
7409219 TAAC
131 TAAC
* * * *
7409223 AGATCTTGACTTCCTATACTGGTGGCAAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTGTT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
* * *
7409288 AGCATGAAGTAGATTAGAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGATCAAAGA
66 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
7409353 TAAC
131 TAAC
* * * *
7409357 AGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAACGGATCTTGCCTTCATGTGTT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
* *
7409422 GGCATGAAGTAGATCAGAAATAGCAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAAGA
66 GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
7409487 TAAC
131 TAAC
* * *
7409491 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGATAACGGATCTTGTCTTCCTGTACT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
* * * * ** **
7409556 GGCAGCGAAGTAGATCAAAGATAACAGATCTCGTCTTCCCATACTGGTGGCGAAGTAG-TCAAAA
66 GGCA-TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATC-AAA
* *
7409620 AATAGC
129 GATAAC
* * *
7409626 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
7409691 GGCAGTGAAGTAGAT
66 GGCA-TGAAGTAGAT
7409706 TGAAGATTTT
Statistics
Matches: 805, Mismatches: 76, Indels: 5
0.91 0.09 0.01
Matches are distributed among these distances:
133 119 0.15
134 559 0.69
135 127 0.16
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (134 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAACGGATCTTGTCTTCATGTATT
GGCATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGA
TAAC
Found at i:7409701 original size:45 final size:45
Alignment explanation
Indices: 7408688--7409712 Score: 900
Period size: 45 Copynumber: 22.9 Consensus size: 45
7408678 GAAAAGCGGT
* ** **
7408688 AGATCTTGTCTCCCCATACTGGTGGCGAAGTAGATCGAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * * * * *
7408733 GGATCTTGTCTTCATGTATTGGCA-TGAAGTAGAT-TAGAGATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGA-AGATAAC
* *
7408777 AGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * ** **
7408822 AGATTTTTTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
** * ** * *
7408867 AGAT-TTGTCTTAATGTATTGG-AATGAAATAGATC-AGAGATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGA-AGATAAC
* * *
7408910 AGATCTTGCCTTCCTGTACTGGCAGCGAAGTAAATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* **
7408955 AGATCTTGACTTCCCATACTAGTGC--CGAAGTAGATCGAAGATAAC
1 AGATCTTGTCTTCCTGTACT-G-GCAGCGAAGTAGATCGAAGATAAC
* * * *
7409000 -GAATCTTGTCTTCATGTATTGGCA-TGAAGTAGATC-AGAGATAGC
1 AG-ATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGA-AGATAAC
* *
7409044 AGATCTTGTCTTCCTGTACTGGAAGCGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* ** *
7409089 AGATCTTGTCTTCGC-ATACTGGTGGCGAAGTAGATTGAAGATAAC
1 AGATCTTGTCTTC-CTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * * * *
7409134 GGATCTTGTCTTCATGTATTGGCA-TGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGA-AGATAAC
* * *
7409178 AGATCTTGTCTTCCTGTACTGGTAGCGAAATAGATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * ** *
7409223 AGATCTTGACTTCCTATACTGGTGGCAAAGTAGATCGAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * ** * * * *
7409268 GGATCTTGTCTTCATGTGTTAGCA-TGAAGTAGAT-TAGAGATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGA-AGATAAC
* *
7409312 AGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* ** *
7409357 AGATCTTGTCTTTCC-ATACTGGTGGTGAAGTAGATCGAAGATAAC
1 AGATCTTGTC-TTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * * ** * *
7409402 GGATCTTGCCTTCATGTGTTGGCA-TGAAGTAGATCAGAA-ATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATC-GAAGATAAC
* *
7409446 AGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
** ** *
7409491 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* *
7409536 GGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* ** ** * * *
7409581 AGATCTCGTCTTCCCATACTGGTGGCGAAGTAG-TCAAAAAATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATC-GAAGATAAC
** ** *
7409626 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
* * *
7409671 AGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATTGAAGAT
1 AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGAT
7409713 TTTTCTTATC
Statistics
Matches: 786, Mismatches: 164, Indels: 60
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.00
43 25 0.03
44 204 0.26
45 542 0.69
46 12 0.02
47 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (45 bp):
AGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAAC
Found at i:7409818 original size:44 final size:43
Alignment explanation
Indices: 7409716--7409825 Score: 116
Period size: 43 Copynumber: 2.5 Consensus size: 43
7409706 TGAAGATTTT
*
7409716 TCTTATCTCTCTGAAG-TAGCAGTGGAGTAGACAGAAGTAACAA
1 TCTTATCTCTCTGAAGTTA-CAGTGGAGTAGACAGAAATAACAA
* * * * *
7409759 TCCTATCTCCCTGAAGTTACAGTGGAGTGGATTA-AAATCACAGA
1 TCTTATCTCTCTGAAGTTACAGTGGAGTAGA-CAGAAATAACA-A
*
7409803 TCTTATCTCTCTGAAGTTTCAGT
1 TCTTATCTCTCTGAAGTTACAGT
7409826 AGAGCAGATC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
43 31 0.56
44 24 0.44
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (43 bp):
TCTTATCTCTCTGAAGTTACAGTGGAGTAGACAGAAATAACAA
Found at i:7411176 original size:3 final size:3
Alignment explanation
Indices: 7411168--7411221 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
7411158 TATTACTTGT
* * *
7411168 TTA TTA TTA TTA TTA TTA TTA TCTA TTA TTA CTA TTA ATA TTA TGA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
*
7411214 TTG TTA TT
1 TTA TTA TT
7411222 TTCATGTACA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:7419098 original size:20 final size:20
Alignment explanation
Indices: 7419070--7419110 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7419060 TTTAATTAAT
*
7419070 TTAGCTTAATTAAGTTAAAC
1 TTAGCTTAATTAAATTAAAC
*
7419090 TTAGTTTAATTAAATTAAAC
1 TTAGCTTAATTAAATTAAAC
7419110 T
1 T
7419111 AATCATTAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (20 bp):
TTAGCTTAATTAAATTAAAC
Found at i:7421688 original size:13 final size:13
Alignment explanation
Indices: 7421670--7421720 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
7421660 AAAATAAAGA
7421670 TTAATTAATTAAT
1 TTAATTAATTAAT
* *
7421683 TTAATTAATCAAA
1 TTAATTAATTAAT
*
7421696 TTAACTAAATTAAT
1 TTAA-TTAATTAAT
*
7421710 TT-CTTAATTAA
1 TTAATTAATTAA
7421721 ATAATTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
12 7 0.23
13 15 0.50
14 8 0.27
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
TTAATTAATTAAT
Found at i:7423044 original size:14 final size:15
Alignment explanation
Indices: 7423025--7423055 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7423015 TCATAAGTTG
7423025 AAAAAAAAGAAA-GA
1 AAAAAAAAGAAATGA
7423039 AAAAAAAAGAAATGA
1 AAAAAAAAGAAATGA
7423054 AA
1 AA
7423056 GTTTATGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAAGAAATGA
Found at i:7426913 original size:13 final size:13
Alignment explanation
Indices: 7426897--7426934 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
7426887 TTTAAACTAA
7426897 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
7426910 ACTTTTTCACAA-C
1 AC-TTTTCAAAAGC
7426923 ACTTTTCAAAAG
1 ACTTTTCAAAAG
7426935 TATTGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 8 0.38
13 5 0.24
14 8 0.38
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:7430288 original size:12 final size:12
Alignment explanation
Indices: 7430267--7430301 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7430257 ACCCTATTTT
*
7430267 AAAATTATATAA
1 AAAATAATATAA
7430279 AAAATAATATAA
1 AAAATAATATAA
*
7430291 AAATTAATATA
1 AAAATAATATA
7430302 GGCAGGCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:7431141 original size:27 final size:27
Alignment explanation
Indices: 7431111--7431166 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
7431101 CATAGTGGAC
7431111 TTAAGCGGGTTGAATAGTGGTATTCGA
1 TTAAGCGGGTTGAATAGTGGTATTCGA
7431138 TTAAGCGGGTTGAATAGTGGTATTCGA
1 TTAAGCGGGTTGAATAGTGGTATTCGA
7431165 TT
1 TT
7431167 CCTTACTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.07, G:0.32, T:0.36
Consensus pattern (27 bp):
TTAAGCGGGTTGAATAGTGGTATTCGA
Found at i:7455793 original size:127 final size:126
Alignment explanation
Indices: 7455546--7455784 Score: 318
Period size: 127 Copynumber: 1.9 Consensus size: 126
7455536 AACTTTTGTT
* *
7455546 TTTTTCTACAATAGTTTCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGATAATGTAAAAA
1 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
* * * *
7455611 ACGCTTTAAGCAGGATGCACTGTCAACAAAATTACTGAAAAGAGCTCCTACGTGGATGCTC
66 ACGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGATGCTC
* * * * ** *
7455672 TTTTTCTACAATAGTTCCTGAAAAAGTTAATTTTGAGAAGACGGTTCTGAACAGACGGTGTCAAA
1 TTTTTCTACAATAGTTCCTGAAAAA-ATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAA
**
7455737 AACGCTTCAAGCAGAATGCACTGTCAGTAAAATTGA-TGAAAAAAGATC
65 AACGCTTCAAGCAGAATGCACTGTCAACAAAATT-ACTGAAAAAAGATC
7455785 TCATGTGGAC
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
126 24 0.25
127 71 0.74
128 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (126 bp):
TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
ACGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGATGCTC
Found at i:7455801 original size:127 final size:126
Alignment explanation
Indices: 7455546--7455815 Score: 310
Period size: 127 Copynumber: 2.1 Consensus size: 126
7455536 AACTTTTGTT
* *
7455546 TTTTTCTACAATAGTTTCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGATAATGTAAAAA
1 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
* * * * ***
7455611 ACGCTTTAAGCAGGATGCACTGTCAACAAAATTACTGAAAAGAGCTCCTACGTGGATGCTC
66 ACGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGACAATC
* * * * ** *
7455672 TTTTTCTACAATAGTTCCTGAAAAAGTTAATTTTGAGAAGACGGTTCTGAACAGACGGTGTCAAA
1 TTTTTCTACAATAGTTCCTGAAAAA-ATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAA
** *
7455737 AACGCTTCAAGCAGAATGCACTGTCAGTAAAATTGA-TGAAAAAAGAT-CTCATGTGGACAATC
65 AACGCTTCAAGCAGAATGCACTGTCAACAAAATT-ACTGAAAAAAGATCCT-ACGTGGACAATC
* *
7455799 TTTTTCTATAGTAGTTC
1 TTTTTCTACAATAGTTC
7455816 TTGTTTGGCC
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
126 26 0.22
127 93 0.77
128 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
ACGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGACAATC
Found at i:7458959 original size:24 final size:24
Alignment explanation
Indices: 7458903--7458959 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
7458893 AAGAACTTTT
7458903 ATTTTATTAAAAATATAAAAATAA
1 ATTTTATTAAAAATATAAAAATAA
*
7458927 ATTACTATT-AAAATATTAAAAATAA
1 ATT-TTATTAAAAATA-TAAAAATAA
*
7458952 CTTTTATT
1 ATTTTATT
7458960 TTATTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTTTATTAAAAATATAAAAATAA
Found at i:7459008 original size:92 final size:92
Alignment explanation
Indices: 7458907--7459099 Score: 359
Period size: 92 Copynumber: 2.1 Consensus size: 92
7458897 ACTTTTATTT
*
7458907 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAATAACTTTTATTTTATTAAATGAA
1 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
7458972 ACAATATAAAAATAGTTTGTACAAATA
66 ACAATATAAAAATAGTTTGTACAAATA
7458999 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
1 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
* *
7459064 ATAATATAAAAATAGTTTTTACAAATA
66 ACAATATAAAAATAGTTTGTACAAATA
7459091 TATTAAAAA
1 TATTAAAAA
7459100 AATCAATGTT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 98 1.00
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (92 bp):
TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
ACAATATAAAAATAGTTTGTACAAATA
Found at i:7461030 original size:25 final size:24
Alignment explanation
Indices: 7460993--7461044 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
7460983 ACTGTTATAA
* *
7460993 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAAAT-ATT
7461017 AAAATTACATAAATGAAAAAATATT
1 AAAATTACA-AAATGAAAAAATATT
7461042 AAA
1 AAA
7461045 TAATATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAATATT
Found at i:7464265 original size:21 final size:21
Alignment explanation
Indices: 7464241--7464284 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7464231 ATCAAGCAAG
*
7464241 TCATCATCTTCGTCGTCGTCA
1 TCATCATCTTCATCGTCGTCA
*
7464262 TCATCATCTTCATTGTCGTCA
1 TCATCATCTTCATCGTCGTCA
7464283 TC
1 TC
7464285 CATGCCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
TCATCATCTTCATCGTCGTCA
Found at i:7469865 original size:19 final size:21
Alignment explanation
Indices: 7469815--7469870 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 21
7469805 AAATGAAAAA
*
7469815 AAAAATAGTAAAAGTTATTTT
1 AAAAATATTAAAAGTTATTTT
7469836 AAAAA-ATTTAAAA-TT-TTTT
1 AAAAATA-TTAAAAGTTATTTT
7469855 AAAAATATTAAAAGTT
1 AAAAATATTAAAAGTT
7469871 GAAAAAATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 15 0.48
20 6 0.19
21 10 0.32
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (21 bp):
AAAAATATTAAAAGTTATTTT
Found at i:7473272 original size:14 final size:16
Alignment explanation
Indices: 7473237--7473275 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7473227 CTTTAATTTA
7473237 TATATATACATACTTT
1 TATATATACATACTTT
**
7473253 TATATATACATGTTTT
1 TATATATACATACTTT
7473269 TATATAT
1 TATATAT
7473276 TTTCATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (16 bp):
TATATATACATACTTT
Found at i:7475588 original size:27 final size:27
Alignment explanation
Indices: 7475550--7475622 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
7475540 AACACGTCAG
*
7475550 GAAAGGAACGTCTTTGTGGC-AAATTAT
1 GAAAAGAACGTCTTTGTGGCGAAA-TAT
* * *
7475577 GAAATGAACGTCTTTGTAGCGTAATAT
1 GAAAAGAACGTCTTTGTGGCGAAATAT
*
7475604 GAAAAGAACGCCTTTGTGG
1 GAAAAGAACGTCTTTGTGG
7475623 TGAATCATGA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (27 bp):
GAAAAGAACGTCTTTGTGGCGAAATAT
Found at i:7475632 original size:27 final size:25
Alignment explanation
Indices: 7475550--7475633 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 25
7475540 AACACGTCAG
* *
7475550 GAAAGGAACGTCTTTGTGGCAAATTAT
1 GAAAAGAACGTCTTTGTGG-TAA-TAT
*
7475577 GAAATGAACGTCTTTGTAGCGTAATAT
1 GAAAAGAACGTCTTTGT-G-GTAATAT
*
7475604 GAAAAGAACGCCTTTGTGGTGAATCAT
1 GAAAAGAACGTCTTTGTGGT-AAT-AT
7475631 GAA
1 GAA
7475634 GGGATAGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
25 2 0.04
26 4 0.08
27 39 0.80
28 3 0.06
29 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (25 bp):
GAAAAGAACGTCTTTGTGGTAATAT
Found at i:7480775 original size:23 final size:24
Alignment explanation
Indices: 7480748--7480792 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7480738 TACAACACTT
*
7480748 AATTTTCT-ATACTTATTTTTTTA
1 AATTTTCTAATACTTAATTTTTTA
*
7480771 AATTTTTTAATACTTAATTTTT
1 AATTTTCTAATACTTAATTTTT
7480793 CAATTTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (24 bp):
AATTTTCTAATACTTAATTTTTTA
Found at i:7480797 original size:23 final size:23
Alignment explanation
Indices: 7480748--7480798 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
7480738 TACAACACTT
*
7480748 AATTTTCTATACTTATTTTTTTA
1 AATTTTCTATACTTATATTTTTA
* *
7480771 AATTTTTTAATACTTA-ATTTTTC
1 AATTTTCT-ATACTTATATTTTTA
7480794 AATTT
1 AATTT
7480799 ATCAAATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (23 bp):
AATTTTCTATACTTATATTTTTA
Found at i:7505543 original size:20 final size:20
Alignment explanation
Indices: 7505518--7505564 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
7505508 ATGTTATCAT
7505518 TGTTCATAACTTGACTCCAC
1 TGTTCATAACTTGACTCCAC
* *
7505538 TGTTCATGATTTGACTCCAC
1 TGTTCATAACTTGACTCCAC
*
7505558 TATTCAT
1 TGTTCAT
7505565 GGGACTGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.40
Consensus pattern (20 bp):
TGTTCATAACTTGACTCCAC
Found at i:7515173 original size:21 final size:23
Alignment explanation
Indices: 7515126--7515231 Score: 59
Period size: 21 Copynumber: 4.8 Consensus size: 23
7515116 CTTATTATTC
*
7515126 TTTATATTATTAAATTGATATAA
1 TTTATATTATTAAATTAATATAA
7515149 --TATATTATT-AATTAATA-AA
1 TTTATATTATTAAATTAATATAA
**
7515168 TTTATAAAATT--ATTAAATATAA
1 TTTATATTATTAAATT-AATATAA
* * *
7515190 TTGGATA-AATTAAAATTAATAAAA
1 TT-TATATTATT-AAATTAATATAA
7515214 TTTA-ATTAATT-AATTAAT
1 TTTATATT-ATTAAATTAAT
7515232 TATGATTTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 21
0.70 0.07 0.22
Matches are distributed among these distances:
19 2 0.03
20 10 0.15
21 20 0.30
22 16 0.24
23 4 0.06
24 11 0.17
25 3 0.05
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (23 bp):
TTTATATTATTAAATTAATATAA
Found at i:7522149 original size:20 final size:20
Alignment explanation
Indices: 7522124--7522191 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 20
7522114 TTAACCATAC
*
7522124 AAAAATTAATAACTACAGTA
1 AAAAATTAATAACTACAATA
*
7522144 AAAAATCAATATAACTACAATA
1 AAAAAT-TA-ATAACTACAATA
* * *
7522166 ACAAATTAATATAATGCAATA
1 AAAAATTAATA-ACTACAATA
7522187 AAAAA
1 AAAAA
7522192 ATCAAAAATC
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 9 0.24
21 13 0.34
22 16 0.42
ACGTcount: A:0.63, C:0.10, G:0.03, T:0.24
Consensus pattern (20 bp):
AAAAATTAATAACTACAATA
Found at i:7522160 original size:22 final size:22
Alignment explanation
Indices: 7522132--7522196 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
7522122 ACAAAAATTA
*
7522132 ATAACTACAGTAAAAAATCAAT
1 ATAACTACAATAAAAAATCAAT
* *
7522154 ATAACTACAATAACAAATTAAT
1 ATAACTACAATAAAAAATCAAT
*
7522176 ATAA-TGCAATAAAAAAATCAA
1 ATAACTACAAT-AAAAAATCAA
7522197 AAATCCAATC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.14
22 31 0.86
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.23
Consensus pattern (22 bp):
ATAACTACAATAAAAAATCAAT
Found at i:7524198 original size:14 final size:14
Alignment explanation
Indices: 7524179--7524232 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
7524169 ACTCACTTGT
7524179 ATTATTTTTTTAAG
1 ATTATTTTTTTAAG
*
7524193 ATTATTTTTAAATT-TG
1 ATTATTTTT---TTAAG
7524209 TATTATTTTTTTAAG
1 -ATTATTTTTTTAAG
7524224 ATTATTTTT
1 ATTATTTTT
7524233 ACATAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 20 0.61
15 1 0.03
16 1 0.03
17 11 0.33
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (14 bp):
ATTATTTTTTTAAG
Found at i:7524213 original size:31 final size:31
Alignment explanation
Indices: 7524175--7524233 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
7524165 CCCGACTCAC
7524175 TTGTATTATTTTTTTAAGATTATTTTTAAAT
1 TTGTATTATTTTTTTAAGATTATTTTTAAAT
7524206 TTGTATTATTTTTTTAAGATTATTTTTA
1 TTGTATTATTTTTTTAAGATTATTTTTA
7524234 CATAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (31 bp):
TTGTATTATTTTTTTAAGATTATTTTTAAAT
Found at i:7524479 original size:22 final size:22
Alignment explanation
Indices: 7524454--7524498 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7524444 TAGTAGTAAT
*
7524454 ATAATAGCAAAATGACAACAAA
1 ATAATAGCAAAATAACAACAAA
*
7524476 ATAATAGCGAAATAACAACAAA
1 ATAATAGCAAAATAACAACAAA
7524498 A
1 A
7524499 CAACTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.64, C:0.13, G:0.09, T:0.13
Consensus pattern (22 bp):
ATAATAGCAAAATAACAACAAA
Found at i:7524498 original size:33 final size:33
Alignment explanation
Indices: 7524435--7524498 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
7524425 ACAAATGATA
* * * *
7524435 ACAACAAAATAGTAGTAATATAATAGCAAAATG
1 ACAACAAAATAATAGGAATATAACAACAAAATG
7524468 ACAACAAAATAATAGCGAA-ATAACAACAAAA
1 ACAACAAAATAATAG-GAATATAACAACAAAA
7524499 CAACTTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.62, C:0.12, G:0.09, T:0.16
Consensus pattern (33 bp):
ACAACAAAATAATAGGAATATAACAACAAAATG
Found at i:7538116 original size:16 final size:17
Alignment explanation
Indices: 7538079--7538116 Score: 53
Period size: 15 Copynumber: 2.3 Consensus size: 17
7538069 ATGAAAATTA
7538079 ATTTCTAATATTTTTATG
1 ATTT-TAATATTTTTATG
7538097 -TTTTAAT-TTTTTATG
1 ATTTTAATATTTTTATG
7538112 ATTTT
1 ATTTT
7538117 GTTAATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.42
16 8 0.42
17 3 0.16
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (17 bp):
ATTTTAATATTTTTATG
Found at i:7540892 original size:21 final size:21
Alignment explanation
Indices: 7540864--7540920 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
7540854 TAGCTCTCAC
7540864 GAGCTTCTGTTTAACTCATAT
1 GAGCTTCTGTTTAACTCATAT
* * * *
7540885 GAGTTTCTGTTTAGCTCTTTT
1 GAGCTTCTGTTTAACTCATAT
7540906 GAGCTTCTGTTTAAC
1 GAGCTTCTGTTTAAC
7540921 CTTTTATGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (21 bp):
GAGCTTCTGTTTAACTCATAT
Found at i:7540910 original size:42 final size:43
Alignment explanation
Indices: 7540846--7541011 Score: 131
Period size: 44 Copynumber: 3.8 Consensus size: 43
7540836 TCGTGTTTAC
*** *
7540846 TTTCCGTTTAGCTCTCACGAGCTTCTGTTTAA-CTCATATGAG
1 TTTCCGTTTAGCTCTTTTGAGCTTCTGTTTAACCTCATATGAA
* **
7540888 TTTCTGTTTAGCTCTTTTGAGCTTCTGTTTAACCTTTTATGAA
1 TTTCCGTTTAGCTCTTTTGAGCTTCTGTTTAACCTCATATGAA
* * ** * *
7540931 TTTCCGTTCAGCTCTTTTATAAGCTTCCATTTAACC-CTTAT-AGG
1 TTTCCGTTTAGCTC-TTT-TGAGCTTCTGTTTAACCTCATATGA-A
* *
7540975 TTTCCGTTCAGCTCTTTTATGAGCTTCCGTTTAACCT
1 TTTCCGTTTAGCTC-TTT-TGAGCTTCTGTTTAACCT
7541012 TTATGGGTTT
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
42 28 0.27
43 20 0.19
44 41 0.40
45 14 0.14
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.46
Consensus pattern (43 bp):
TTTCCGTTTAGCTCTTTTGAGCTTCTGTTTAACCTCATATGAA
Found at i:7540958 original size:23 final size:23
Alignment explanation
Indices: 7540932--7541005 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
7540922 TTTTATGAAT
7540932 TTCCGTTCAGCTCTTTTATAAGC
1 TTCCGTTCAGCTCTTTTATAAGC
* * * * * *
7540955 TTCCATTTAAC-C-CTTATAGGT
1 TTCCGTTCAGCTCTTTTATAAGC
*
7540976 TTCCGTTCAGCTCTTTTATGAGC
1 TTCCGTTCAGCTCTTTTATAAGC
7540999 TTCCGTT
1 TTCCGTT
7541006 TAACCTTTAT
Statistics
Matches: 36, Mismatches: 13, Indels: 4
0.68 0.25 0.08
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 20 0.56
ACGTcount: A:0.16, C:0.26, G:0.14, T:0.45
Consensus pattern (23 bp):
TTCCGTTCAGCTCTTTTATAAGC
Found at i:7540987 original size:44 final size:44
Alignment explanation
Indices: 7540931--7541022 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 44
7540921 CTTTTATGAA
7540931 TTTCCGTTCAGCTCTTTTATAAGCTTCCATTTAACCCTTATAGG
1 TTTCCGTTCAGCTCTTTTATAAGCTTCCATTTAACCCTTATAGG
* * * *
7540975 TTTCCGTTCAGCTCTTTTATGAGCTTCCGTTTAACCTTTATGGG
1 TTTCCGTTCAGCTCTTTTATAAGCTTCCATTTAACCCTTATAGG
7541019 TTTC
1 TTTC
7541023 TGTTGAGCAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.46
Consensus pattern (44 bp):
TTTCCGTTCAGCTCTTTTATAAGCTTCCATTTAACCCTTATAGG
Found at i:7541016 original size:21 final size:21
Alignment explanation
Indices: 7540864--7541016 Score: 69
Period size: 21 Copynumber: 7.0 Consensus size: 21
7540854 TAGCTCTCAC
* *
7540864 GAGCTTCTGTTTAA-CTCATAT
1 GAGCTTCCGTTTAACCT-TTAT
* * *
7540885 GAGTTTCTGTTTAGCTCTTT-T
1 GAGCTTCCGTTTAAC-CTTTAT
*
7540906 GAGCTTCTGTTTAACCTTTTAT
1 GAGCTTCCGTTTAACC-TTTAT
** * *
7540928 GAATTTCCGTTCAGCTCTTTTAT
1 GAGCTTCCGTTTAAC-C-TTTAT
* * *
7540951 AAGCTTCCATTTAACCCTTAT
1 GAGCTTCCGTTTAACCTTTAT
* * *
7540972 -AGGTTTCCGTTCAGCTCTTTTAT
1 GA-GCTTCCGTTTAAC-C-TTTAT
7540995 GAGCTTCCGTTTAACCTTTAT
1 GAGCTTCCGTTTAACCTTTAT
7541016 G
1 G
7541017 GGTTTCTGTT
Statistics
Matches: 98, Mismatches: 25, Indels: 18
0.70 0.18 0.13
Matches are distributed among these distances:
20 2 0.02
21 48 0.49
22 15 0.15
23 32 0.33
24 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (21 bp):
GAGCTTCCGTTTAACCTTTAT
Found at i:7547840 original size:43 final size:43
Alignment explanation
Indices: 7547778--7547893 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
7547768 TATGCGTTAT
* *
7547778 CGTGTAAGACCAC-GTCTGGGACGTTGGCATCGACT-TGTGTTTGA
1 CGTGTAAGACC-CTGTCTGGGACGTTGGCATC-AATATGTGATT-A
**
7547822 -GTGTAAGACCCTGTCTGGGACAATGGCATCAATATGTGATTA
1 CGTGTAAGACCCTGTCTGGGACGTTGGCATCAATATGTGATTA
* * *
7547864 CATGTAAGACCATGTCTAGGACGTTGGCAT
1 CGTGTAAGACCCTGTCTGGGACGTTGGCAT
7547894 TGTACGAGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 4 0.07
43 56 0.93
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCCTGTCTGGGACGTTGGCATCAATATGTGATTA
Found at i:7554525 original size:34 final size:33
Alignment explanation
Indices: 7554495--7554603 Score: 148
Period size: 34 Copynumber: 3.2 Consensus size: 33
7554485 AATAAATCAT
7554495 GGTTTAGAGTTTTTTAAAAAATTAATTAAATTAG
1 GGTTTAGAG-TTTTTAAAAAATTAATTAAATTAG
* * *
7554529 GTTTTA-AGGGTTTTAAATAAATAAATTAAATTAG
1 GGTTTAGA-GTTTTTAAA-AAATTAATTAAATTAG
7554563 GGTTTAGAGTTTTTAAGAAAATTAATTAAATTAG
1 GGTTTAGAGTTTTTAA-AAAATTAATTAAATTAG
7554597 GGTTTAG
1 GGTTTAG
7554604 TTTAAAAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
33 8 0.12
34 55 0.85
35 2 0.03
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (33 bp):
GGTTTAGAGTTTTTAAAAAATTAATTAAATTAG
Found at i:7554793 original size:31 final size:31
Alignment explanation
Indices: 7554755--7554816 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
7554745 TCCTAAAAAG
7554755 ATAATGTCAAAAACGCTTCAAGCAGCATGCA
1 ATAATGTCAAAAACGCTTCAAGCAGCATGCA
* *
7554786 ATAATGTCAAAAACGTTTCAAGCAGGATGCA
1 ATAATGTCAAAAACGCTTCAAGCAGCATGCA
7554817 TTGTCAGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (31 bp):
ATAATGTCAAAAACGCTTCAAGCAGCATGCA
Found at i:7559247 original size:7 final size:7
Alignment explanation
Indices: 7559235--7559260 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7559225 TAGTCGATTG
7559235 GTATTTA
1 GTATTTA
7559242 GTATTTA
1 GTATTTA
7559249 GTATTTA
1 GTATTTA
7559256 GTATT
1 GTATT
7559261 GTGTATTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:7559266 original size:14 final size:14
Alignment explanation
Indices: 7559231--7559267 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
7559221 TCGCTAGTCG
7559231 ATTG-GTATTTAGT
1 ATTGTGTATTTAGT
7559244 ATT-TAGTATTTAGT
1 ATTGT-GTATTTAGT
7559258 ATTGTGTATT
1 ATTGTGTATT
7559268 GTGTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.14
14 17 0.81
15 1 0.05
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (14 bp):
ATTGTGTATTTAGT
Found at i:7559945 original size:18 final size:18
Alignment explanation
Indices: 7559918--7559957 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7559908 CAAGTGCGTT
* *
7559918 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
7559936 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
7559954 TCCT
1 TCCT
7559958 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:7560552 original size:192 final size:192
Alignment explanation
Indices: 7560220--7560591 Score: 457
Period size: 192 Copynumber: 1.9 Consensus size: 192
7560210 ATCTATAATA
* * * ** *
7560220 GGTTTAAGTCATGGTTTTCATTTGGAGCTTTGTGATTAAAACACTATTATTAGTTGAATGGAAAT
1 GGTTCAAGTCATGGTTTTCATTTGGAACTTTGTGATTAAAACACAACAATTACTTGAATGGAAAT
* * * * * ** *
7560285 GCATTTGCATTTGTGTATCCTGCAATGCTTTTTAATTGAACTTTGGGGTTGGAATTGTTATTAGG
66 GCACTTGCATTTGTATATCCTGCAAAGCTTTTTAAGTCAACTTTGGAATTGAAATTGTTATTAGG
* *
7560350 AAGTAATTGATG-TTTTTATGT-TGACGTTAATGAATACAATAGACTAAGTTGAATTTTTTATG
131 AAGTAATTGATGATTTTT-T-TATGACGTTAATGAACACAATAGACCAAGTTGAATTTTTTATG
*
7560412 GGTTCAAGTCATGGTTTTCATTT-GAACTTTGTGATTACAACACAACAAGTTACTTGAATGGAAA
1 GGTTCAAGTCATGGTTTTCATTTGGAACTTTGTGATTAAAACACAACAA-TTACTTGAATGGAAA
** *
7560476 TGCACTTGTGTTT-TCATATCCTGCAAAGCTTCTTT-AGTCAATTTTGGAATTGAAATTGTTATT
65 TGCACTTGCATTTGT-ATATCCTGCAAAGCTT-TTTAAGTCAACTTTGGAATTGAAATTGTTATT
* * *
7560539 AGGATGTAATTGATGATTTTTTTATGATGTTAATGAACATAATAGACCAAGTT
128 AGGAAGTAATTGATGATTTTTTTATGACGTTAATGAACACAATAGACCAAGTT
7560592 TGGGACCTTT
Statistics
Matches: 152, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
191 22 0.14
192 122 0.80
193 8 0.05
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (192 bp):
GGTTCAAGTCATGGTTTTCATTTGGAACTTTGTGATTAAAACACAACAATTACTTGAATGGAAAT
GCACTTGCATTTGTATATCCTGCAAAGCTTTTTAAGTCAACTTTGGAATTGAAATTGTTATTAGG
AAGTAATTGATGATTTTTTTATGACGTTAATGAACACAATAGACCAAGTTGAATTTTTTATG
Found at i:7561355 original size:21 final size:21
Alignment explanation
Indices: 7561331--7561385 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
7561321 AACTCTAACA
7561331 CTAACCCTAAACTTAAAAACC
1 CTAACCCTAAACTTAAAAACC
7561352 CTAACCCTTAAA-TTAAAAACC
1 CTAACCC-TAAACTTAAAAACC
7561373 CTAAACCCTAAAC
1 CT-AACCCTAAAC
7561386 ATTCACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 22 0.71
22 9 0.29
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (21 bp):
CTAACCCTAAACTTAAAAACC
Found at i:7564585 original size:2 final size:2
Alignment explanation
Indices: 7564578--7564626 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
7564568 TTAGAGATGA
*
7564578 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7564620 TC TC TC T
1 TC TC TC T
7564627 TCTATTTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:7566317 original size:44 final size:44
Alignment explanation
Indices: 7566254--7566347 Score: 179
Period size: 44 Copynumber: 2.1 Consensus size: 44
7566244 GTCTCGACTT
7566254 TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
*
7566298 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
7566342 TCATTT
1 TCATTT
7566348 ATTGAATACA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (44 bp):
TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
Found at i:7566341 original size:22 final size:22
Alignment explanation
Indices: 7566272--7566342 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
7566262 ATATACTTAT
7566272 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
** * *
7566294 CAAATCAT-TTTCATATG-CTT-AT
1 CAAAT-ATAAGT-AT-TGTATTAAC
7566316 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
7566338 CAAAT
1 CAAAT
7566343 CATTTATTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 6 0.17
22 19 0.54
23 6 0.17
24 2 0.06
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (22 bp):
CAAATATAAGTATTGTATTAAC
Found at i:7566980 original size:13 final size:13
Alignment explanation
Indices: 7566959--7567035 Score: 118
Period size: 13 Copynumber: 5.9 Consensus size: 13
7566949 ACACTTAAAT
*
7566959 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
7566972 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
* *
7566985 TTCTGAAAAGTAC
1 TTCTCAAAAGCAC
*
7566998 TTTTCAAAAGCAC
1 TTCTCAAAAGCAC
7567011 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
7567024 TTCTCAAAAGCA
1 TTCTCAAAAGCA
7567036 ATAAAGAACT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.10, T:0.26
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:7568582 original size:125 final size:126
Alignment explanation
Indices: 7568276--7568593 Score: 462
Period size: 126 Copynumber: 2.5 Consensus size: 126
7568266 CCCAAACATG
* * *
7568276 CTACTATAGCAAAAGCGCATCCACGAAGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * *
7568340 CTTGTAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
65 CTTGAAGCGTTTTTTAAACTATTTACTCAAAAACGTCAACTAGAAATTATTTCTTCCAGGAC
*
7568402 CTATTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
*
7568467 TTGAAGCGTTTTTTATACTATTTACTCAAAAACGTCAACTAGAAATTATTT-TTCCAGGAC
66 TTGAAGCGTTTTTTAAACTATTTACTCAAAAACGTCAACTAGAAATTATTTCTTCCAGGAC
* * * * * *
7568527 CTACTGTAGCAAAAGCGCGTACAC-ATGGGCGCGACTTCAGAAATCCTTCTGATAAAGCATCGTG
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
7568591 CTT
65 CTT
7568594 TGATTTTATT
Statistics
Matches: 174, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
124 1 0.01
125 67 0.39
126 104 0.60
127 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTACTCAAAAACGTCAACTAGAAATTATTTCTTCCAGGAC
Found at i:7572684 original size:27 final size:27
Alignment explanation
Indices: 7572654--7572708 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7572644 TATGTTTATA
**
7572654 TATTAACCTTAATAATAAATTTAGTCT
1 TATTAACCACAATAATAAATTTAGTCT
* *
7572681 TATTCACCACAATGATAAATTTAGTCT
1 TATTAACCACAATAATAAATTTAGTCT
7572708 T
1 T
7572709 CAACGTTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (27 bp):
TATTAACCACAATAATAAATTTAGTCT
Found at i:7580676 original size:21 final size:21
Alignment explanation
Indices: 7580642--7580681 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7580632 TTTTAGATAA
* *
7580642 ATATATATAGATACTTTTTTT
1 ATATACATAGATACATTTTTT
*
7580663 ATATACATATATACATTTT
1 ATATACATAGATACATTTT
7580682 CATAATATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (21 bp):
ATATACATAGATACATTTTTT
Found at i:7580786 original size:19 final size:19
Alignment explanation
Indices: 7580762--7580829 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 19
7580752 TATATATTAA
7580762 TTTATATACATATATATC-
1 TTTATATACATATATATCT
*
7580780 TTT-TATAC-TTTATAAT-T
1 TTTATATACATATAT-ATCT
* *
7580797 TTGAAATACATATATATACT
1 TTTATATACATATATAT-CT
7580817 TTTAATATACATA
1 TTT-ATATACATA
7580830 CGTGCGTACA
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
16 4 0.11
17 9 0.24
18 9 0.24
19 4 0.11
20 3 0.08
21 8 0.22
ACGTcount: A:0.40, C:0.09, G:0.01, T:0.50
Consensus pattern (19 bp):
TTTATATACATATATATCT
Found at i:7580819 original size:21 final size:21
Alignment explanation
Indices: 7580790--7580829 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7580780 TTTTATACTT
7580790 TATAATTTTGAA-ATACATATA
1 TATAATTTT-AATATACATATA
*
7580811 TATACTTTTAATATACATA
1 TATAATTTTAATATACATA
7580830 CGTGCGTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (21 bp):
TATAATTTTAATATACATATA
Found at i:7586411 original size:21 final size:21
Alignment explanation
Indices: 7586372--7586412 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7586362 TCAAAATGAC
*
7586372 ATAGTTTTGCATTTTAACTTA
1 ATAGTTTTGCATTTAAACTTA
7586393 ATAGTTTTG-ACTTTAAACTT
1 ATAGTTTTGCA-TTTAAACTT
7586413 TAGAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (21 bp):
ATAGTTTTGCATTTAAACTTA
Found at i:7592933 original size:16 final size:19
Alignment explanation
Indices: 7592914--7592950 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
7592904 AGTAAATAAG
7592914 TAATTTT-TTA-AA-ATAT
1 TAATTTTATTATAAGATAT
7592930 TAATTTTATTATAAGATAT
1 TAATTTTATTATAAGATAT
7592949 TA
1 TA
7592951 TCACATCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 2 0.11
19 6 0.33
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATTTTATTATAAGATAT
Found at i:7600723 original size:12 final size:12
Alignment explanation
Indices: 7600706--7600731 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7600696 TTTTTTATAT
7600706 ATATAAAAGGTA
1 ATATAAAAGGTA
7600718 ATATAAAAGGTA
1 ATATAAAAGGTA
7600730 AT
1 AT
7600732 TGAATAGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.15, T:0.27
Consensus pattern (12 bp):
ATATAAAAGGTA
Found at i:7601470 original size:13 final size:13
Alignment explanation
Indices: 7601454--7601506 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
7601444 TTTAAACCAA
7601454 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
7601467 ACTTCTCAAAAAC
1 ACTTTTCAAAAGC
*
7601480 ACTTTTCTACAA-C
1 ACTTTTC-AAAAGC
7601493 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
7601506 A
1 A
7601507 ATTAAGAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 3 0.09
13 27 0.82
14 3 0.09
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:7603479 original size:24 final size:24
Alignment explanation
Indices: 7603450--7603503 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7603440 TCTTTCTAGA
* *
7603450 ATATTTAGTATTTATGAGTACAAT
1 ATATTTAGCATTTATGAGCACAAT
* *
7603474 ATATTTAGCATTTATTAGCATAAT
1 ATATTTAGCATTTATGAGCACAAT
7603498 ATATTT
1 ATATTT
7603504 GACTTTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (24 bp):
ATATTTAGCATTTATGAGCACAAT
Found at i:7607748 original size:24 final size:24
Alignment explanation
Indices: 7607683--7607736 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
7607673 TCTTTCTAGA
* * *
7607683 ATATTTAGTATTTATGAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
7607707 ATATTTAGCATTTATTAGCATAAT
1 ATATTTAGCATTTATTAGCATAAT
7607731 ATATTT
1 ATATTT
7607737 GGCTTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:7610294 original size:18 final size:17
Alignment explanation
Indices: 7610265--7610299 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7610255 CCCACTAAAA
7610265 GTAAAGAAAAAAAATTG
1 GTAAAGAAAAAAAATTG
7610282 GTAAAGAAAAAAAATTG
1 GTAAAGAAAAAAAATTG
7610299 G
1 G
7610300 CTATGTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (17 bp):
GTAAAGAAAAAAAATTG
Found at i:7611961 original size:22 final size:22
Alignment explanation
Indices: 7611919--7611961 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7611909 TCTCTTCATT
*
7611919 GGTATCACGATATCCTCTTCGA
1 GGTATCACGATATCCTATTCGA
*
7611941 GGTATCGCGATA-CCATATTCG
1 GGTATCACGATATCC-TATTCG
7611962 TCAAGAGGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (22 bp):
GGTATCACGATATCCTATTCGA
Found at i:7616406 original size:40 final size:40
Alignment explanation
Indices: 7616354--7616635 Score: 298
Period size: 40 Copynumber: 6.8 Consensus size: 40
7616344 TTTTCTTTCG
*
7616354 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
7616394 TCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-G----ATGCGA
7616440 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * *
7616480 TTTGCTCCACTACTACTTAGGGAGATAAGATCTGTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-G----ATGCGA
* *
7616526 TCTGCTCCACTACTTCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
7616566 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
7616606 TATGCTCCACTACTGTTTAGAGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
7616636 TCTGGTCTTC
Statistics
Matches: 206, Mismatches: 20, Indels: 32
0.80 0.08 0.12
Matches are distributed among these distances:
39 5 0.02
40 122 0.59
41 4 0.02
42 2 0.01
43 4 0.02
44 2 0.01
45 4 0.02
46 57 0.28
47 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:7616436 original size:86 final size:86
Alignment explanation
Indices: 7616328--7616595 Score: 450
Period size: 86 Copynumber: 3.1 Consensus size: 86
7616318 CTGCAACTTC
* *
7616328 AGGGAGATAGGAT-TG-GTTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATG
1 AGGGAGATAAGATCTGTGGTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATG
*
7616391 CGATCTGCTCTACTACTGCTT
66 CGATCTGCTCCACTACTGCTT
*
7616412 AGGGAGATAAGATCTGTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 AGGGAGATAAGATCTGTGGTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATG
* *
7616477 CGATTTGCTCCACTACTACTT
66 CGATCTGCTCCACTACTGCTT
*
7616498 AGGGAGATAAGATCTGTGGTTTCTTTCGTCTGCTCCACTACTTCTTAGGGAGATAAGACTTGATG
1 AGGGAGATAAGATCTGTGGTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATG
*
7616563 TGATCTGCTCCACTACTGCTT
66 CGATCTGCTCCACTACTGCTT
7616584 AGGGAGATAAGA
1 AGGGAGATAAGA
7616596 CTTGATGTGA
Statistics
Matches: 172, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
84 12 0.07
85 2 0.01
86 158 0.92
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (86 bp):
AGGGAGATAAGATCTGTGGTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATG
CGATCTGCTCCACTACTGCTT
Found at i:7616490 original size:126 final size:126
Alignment explanation
Indices: 7616356--7616720 Score: 385
Period size: 126 Copynumber: 2.9 Consensus size: 126
7616346 TTCTTTCGTC
*
7616356 TGCTCCACTACTACTTAGGGAGATAAGA-CTTG-ATGCGATCTGCTCTACTACTGCTTAGGGAGA
1 TGCTCCACTACTACTTAGGGAGATAAGATCTTGTATTCGATCTGCTC-ACTACTGCTTAGGGAGA
*
7616419 TAAGATCTGTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATT
65 TAAGA-CT-TGGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATA
* *
7616482 TGCTCCACTACTACTTAGGGAGATAAGATCTGTGGTTTCTTTCG-TCTGCTCCACTACTTCTTAG
1 TGCTCCACTACTACTTAGGGAGATAAGATCT-T-G--T-ATTCGATCTGCT-CACTACTGCTTAG
* * *
7616546 GGAGATAAGACTT-G---ATGT-GATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
60 GGAGATAAGACTTGGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
7616606 TA
125 TA
** * * * * * * *
7616608 TGCTCCACTACTGTTTAGAGAGATAAGATCTGGTCTTCGACCTACTC-CGAAGCTGCTTAAGGAG
1 TGCTCCACTACTACTTAGGGAGATAAGATCTTGTATTCGATCTGCTCAC-TA-CTGCTTAGGGAG
**
7616672 AT-AGGGTTGGTTTC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
64 ATAAGACTTGGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
7616721 TCTGCAATCT
Statistics
Matches: 201, Mismatches: 21, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
120 1 0.00
121 10 0.05
122 18 0.09
124 2 0.01
125 33 0.16
126 98 0.49
127 2 0.01
128 1 0.00
129 2 0.01
130 1 0.00
131 2 0.01
132 27 0.13
133 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (126 bp):
TGCTCCACTACTACTTAGGGAGATAAGATCTTGTATTCGATCTGCTCACTACTGCTTAGGGAGAT
AAGACTTGGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATA
Found at i:7616821 original size:40 final size:40
Alignment explanation
Indices: 7616764--7616865 Score: 159
Period size: 40 Copynumber: 2.5 Consensus size: 40
7616754 GGGAGATAGA
** * *
7616764 ACTACTGCTTATAGAGATAAGACTTGATGCGATCTGCTCC
1 ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGCTCC
*
7616804 ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGTTCC
1 ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGCTCC
7616844 ACTACTGCTTAGGGAGATAAGA
1 ACTACTGCTTAGGGAGATAAGA
7616866 TCTGTGGTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (40 bp):
ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGCTCC
Found at i:7616902 original size:44 final size:43
Alignment explanation
Indices: 7616854--7617302 Score: 169
Period size: 44 Copynumber: 10.2 Consensus size: 43
7616844 ACTACTGCTT
* *
7616854 AGGGAGATAAGATCTGTGGTCTTCAATCTATTCCACTGCCAACC
1 AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTG-CAACC
* * * * *
7616898 AGGGAGAT-AGAAT-TATCG-GCTTCAATGTACTCCACTGTAGTCAC
1 AGGGAGATAAG-ATCTGT-GATCTTCAATCTACTCCACTGCA-AC-C
* * * ** * * * **
7616942 AGTGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCC
1 AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTGCAACC
* *
7616985 TAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTCAACC
1 -AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTG-CAACC
* * * * * *
7617030 AGGGAGAT-AGAAT-TATTG-GCTTCAATGTACTCCACTGTAGTCAT
1 AGGGAGATAAG-ATCT-GTGATCTTCAATCTACTCCACTGCA-AC-C
* * ** * * * ** *
7617074 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTGCAAC-C
* * *
7617118 AGGGAGAGAAGATCTGTAATCTTCAATCTATTCCACTGCCAACC
1 AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTG-CAACC
* * * *
7617162 AGGGAGAT-AGAAT-TATCGA-CTTCAATGTACTCCACTGTAGTCAC
1 AGGGAGATAAG-ATCTGT-GATCTTCAATCTACTCCACTGCA-AC-C
* * * * * * * ** *
7617206 AGGAAGGTAAAATCTGTCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTGCAAC-C
* * *
7617250 AGGGAGATAAGATCAGTAATCTTCAATCTATTCCACTGCCAACC
1 AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTG-CAACC
7617294 AGGGAGATA
1 AGGGAGATA
7617303 GAATTATCGG
Statistics
Matches: 282, Mismatches: 98, Indels: 50
0.66 0.23 0.12
Matches are distributed among these distances:
42 3 0.01
43 63 0.22
44 160 0.57
45 56 0.20
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
AGGGAGATAAGATCTGTGATCTTCAATCTACTCCACTGCAACC
Found at i:7617072 original size:132 final size:132
Alignment explanation
Indices: 7616835--7617369 Score: 926
Period size: 132 Copynumber: 4.1 Consensus size: 132
7616825 ACTTGATACA
* **
7616835 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTCTTCAATCTATTCCACTGCCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
*
7616900 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGTGAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
7616965 CG
131 CG
* *
7616967 ATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
* *
7617032 GGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAGTCATAGGGAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
7617097 CG
131 CG
*
7617099 ATCTGCTCCACTACTGCTTAGGGAGAGAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
* * *
7617164 GGAGATAGAATTATCGACTTCAATGTACTCCACTGTAGTCACAGGAAGGTAAAATCTGTCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
7617229 CG
131 CG
*
7617231 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTTCAATCTATTCCACTGCCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
* * *
7617296 GGAGATAGAATTATCGGCTTCAACGTACTCCACTGTAGTCTCAGGGAGGTAAAATCCGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
7617361 CG
131 CG
7617363 ATCTGCT
1 ATCTGCT
7617370 TCACGCTAAT
Statistics
Matches: 379, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 379 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (132 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
CG
Found at i:7617535 original size:132 final size:132
Alignment explanation
Indices: 7617353--7617827 Score: 648
Period size: 132 Copynumber: 3.6 Consensus size: 132
7617343 GGTAAAATCC
* * * * * *
7617353 GCCATCTTCGATCTGCTTCACGCTAATACATGAAGACAATATCTGCTTTCTTTGATCTACTTCGC
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCGC
* * * * *
7617418 CACCAGTATGGGAAGACAATATCTGCATTTTCGATCCACTTCCTACCAATATAAGAAGGCATGAC
66 CACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGAC
7617483 AT
131 AT
* * * * * * *
7617485 GCTATCTACGATCTACTTCACACCAATACATGAAGACAATATCTGCTTTCTTTGATCTACTTCGC
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCGC
* * *
7617550 CTCCAATATGGGAAGACAAAATCTGCATTTTTGATCCACTTCCTACCAATATAGGAAGACATGAC
66 CACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGAC
*
7617615 CT
131 AT
* *
7617617 ACCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT-TC
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCGC
* * * * *
7617681 TACCAATATAGGAAGACAAGACCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGAC
66 CACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGAC
*
7617746 TT
131 AT
*
7617748 GCCATATTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTC-C
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCGC
*
7617812 TACCAATATAGGAAGA
66 CACCAATATAGGAAGA
7617828 TAGGACCTGC
Statistics
Matches: 310, Mismatches: 32, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 136 0.44
132 174 0.56
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (132 bp):
GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCGC
CACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGAC
AT
Found at i:7617542 original size:44 final size:43
Alignment explanation
Indices: 7617357--7618015 Score: 440
Period size: 44 Copynumber: 15.0 Consensus size: 43
7617347 AAATCCGCCA
* * * *
7617357 TCTTCGATCTGCTT-CACGCTAATACATGAAGACAATATCTGCTT
1 TCTTCGATCTACTTCCAC-C-AATATAGGAAGACAAGATCTGCTT
* * * * *
7617401 TCTTTGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCAT
1 TCTTCGATCTACTT--CCACCAATATAGGAAGACAAGATCTGCTT
* * * * *
7617446 T-TTCGATCCACTTCCTACCAATATAAGAAGGCATGA-CATGCTA
1 TCTTCGATCTACTTCC-ACCAATATAGGAAGACAAGATC-TGCTT
* * * *
7617489 TCTACGATCTACTTCACACCAATACATGAAGACAATATCTGCTT
1 TCTTCGATCTACTTC-CACCAATATAGGAAGACAAGATCTGCTT
* * * *
7617533 TCTTTGATCTACTTCGCCTCCAATATGGGAAGACAAAATCTGCATT
1 TCTTCGATCTACTT--CCACCAATATAGGAAGACAAGATCTGC-TT
* * * * **
7617579 T-TT-GATCCACTTCCTACCAATATAGGAAGACATGACCTACCA
1 TCTTCGATCTACTTCC-ACCAATATAGGAAGACAAGATCTGCTT
* * * *
7617621 TATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTC-CACCAATATAGGAAGACAAGATCTGCTT
* * * *
7617665 TCTTCGATCCACTTTCTACCAATATAGGAAGACAAGACCTGC-A
1 TCTTCGATCTAC-TTCCACCAATATAGGAAGACAAGATCTGCTT
* * **
7617708 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGA-CTTGCCA
1 TCTTCGATCTACTTCC-ACCAATATAGGAAGACAAGATC-TGCTT
* * *
7617752 TATTCGATCTACTT-CACGCTAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCCAC-C-AATATAGGAAGACAAGATCTGCTT
* * * * **
7617796 TCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCCA
1 TCTTCGATCTACTTCC-ACCAATATAGGAAGACAAGATCTGCTT
* * *
7617840 TCTTCGATCTACTT-CACGCTAATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCCAC-C-AATATAGGAAGACAAGATCTGCTT
* * * * *
7617884 TCTTCGATCCACTTCCAACCAATATAGGAATACATGACCTGC-A
1 TCTTCGATCTACTTCC-ACCAATATAGGAAGACAAGATCTGCTT
* * * * *
7617927 TCTTCGATCCACTTCCTACCAATATAAGAAGACATGACCTG-TAA
1 TCTTCGATCTACTTCC-ACCAATATAGGAAGACAAGATCTGCT-T
* * *
7617971 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTC-CACCAATATAGGAAGACAAGATCTGCTT
7618015 T
1 T
7618016 AATGTCTTCA
Statistics
Matches: 480, Mismatches: 103, Indels: 64
0.74 0.16 0.10
Matches are distributed among these distances:
42 14 0.03
43 115 0.24
44 283 0.59
45 56 0.12
46 9 0.02
47 3 0.01
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (43 bp):
TCTTCGATCTACTTCCACCAATATAGGAAGACAAGATCTGCTT
Found at i:7617808 original size:219 final size:217
Alignment explanation
Indices: 7617429--7618015 Score: 750
Period size: 219 Copynumber: 2.7 Consensus size: 217
7617419 ACCAGTATGG
* * * * * *
7617429 GAAGACAATATCTGCATT-TTCGATCCACTTCCTACCAATATAAGAAGGCATGACATGCTATCTA
1 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGC-ATCTT
* * * * ** * *
7617493 CGATCTACTTCAC-ACCAATACATGAAGACAATA-TCTGCTTTCTTTGATCTACTTCGC-CTCCA
65 CGATCCACTTC-CTACCAATATAAGAAGACAAGACT-TGCAATCTTCGATCTACTTCACGCT--A
*** * *
7617555 ATATGGGAAGACAAAATCTGCATTTTTGATCCACTTCCTACCAATATAGGAAGACATGACCTACC
126 ATACATGAAGACAAGATCTGC-TTTTTGATCCACTTCCTACCAATATAGGAAGACAGGACCTACC
7617620 ATATTCGATCTACTTCACGCCAATACAT
190 ATATTCGATCTACTTCACGCCAATACAT
* *
7617648 GAAGACAAGATCTGCTTTCTTCGATCCACTTTCTACCAATATAGGAAGACAAGACCTGCATCTTC
1 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGCATCTTC
* * * *
7617713 GATCCACTTCCTACCAATATAGGAAGACAGGACTTGCCATATTCGATCTACTTCACGCTAATACA
66 GATCCACTTCCTACCAATATAAGAAGACAAGACTTGCAATCTTCGATCTACTTCACGCTAATACA
* * *
7617778 TGAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCCATCT
131 TGAAGACAAGATCTGCTTT-TT-GATCCACTTCCTACCAATATAGGAAGACAGGACCTACCATAT
*
7617843 TCGATCTACTTCACGCTAATACAT
194 TCGATCTACTTCACGCCAATACAT
* * *
7617867 GAAGACAAGATCTACTTTCTTCGATCCACTTCCAACCAATATAGGAATACATGACCTGCATCTTC
1 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGCATCTTC
* * * *
7617932 GATCCACTTCCTACCAATATAAGAAGACATGACCTGTAATCTTCGATCTACTTCACGCCAATACA
66 GATCCACTTCCTACCAATATAAGAAGACAAGACTTGCAATCTTCGATCTACTTCACGCTAATACA
7617997 TGAAGACAAGATCTGCTTT
131 TGAAGACAAGATCTGCTTT
7618016 AATGTCTTCA
Statistics
Matches: 323, Mismatches: 39, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
217 3 0.01
218 21 0.07
219 261 0.81
220 38 0.12
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (217 bp):
GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGCATCTTC
GATCCACTTCCTACCAATATAAGAAGACAAGACTTGCAATCTTCGATCTACTTCACGCTAATACA
TGAAGACAAGATCTGCTTTTTGATCCACTTCCTACCAATATAGGAAGACAGGACCTACCATATTC
GATCTACTTCACGCCAATACAT
Found at i:7626231 original size:16 final size:16
Alignment explanation
Indices: 7626212--7626244 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7626202 ATAAGATTTA
7626212 ATATTAAATTT-ATATT
1 ATATT-AATTTAATATT
7626228 ATATTAATTTAATATT
1 ATATTAATTTAATATT
7626244 A
1 A
7626245 AAGTGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATATTAATTTAATATT
Found at i:7673952 original size:21 final size:22
Alignment explanation
Indices: 7673926--7673980 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
7673916 CAGCGGTGGT
*
7673926 GGTGAGATTAG-TTACTGTAGC
1 GGTGAGATTAGAATACTGTAGC
7673947 GGTGAGATT-GAATACTGTAGC
1 GGTGAGATTAGAATACTGTAGC
**
7673968 AATGAGATTAGAA
1 GGTGAGATTAGAA
7673981 ACAATGGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.03
21 25 0.86
22 3 0.10
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (22 bp):
GGTGAGATTAGAATACTGTAGC
Found at i:7676289 original size:22 final size:22
Alignment explanation
Indices: 7676264--7676323 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
7676254 GAAATAAAAT
7676264 AAAATCTGGAAAATGACATGCC
1 AAAATCTGGAAAATGACATGCC
7676286 AAAATCTGGAAAATGACATGCC
1 AAAATCTGGAAAATGACATGCC
*
7676308 AAAGTCTGGAAAATGA
1 AAAATCTGGAAAATGA
7676324 ATTACCTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (22 bp):
AAAATCTGGAAAATGACATGCC
Found at i:7676345 original size:11 final size:11
Alignment explanation
Indices: 7676329--7676368 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
7676319 AATGAATTAC
7676329 CTTCAAAATGA
1 CTTCAAAATGA
7676340 CTTCAAATAT-A
1 CTTCAAA-ATGA
7676351 -TT-AAAATGA
1 CTTCAAAATGA
7676360 CTTCAAAAT
1 CTTCAAAAT
7676369 CTGGAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 2 0.08
9 4 0.16
10 4 0.16
11 13 0.52
12 2 0.08
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (11 bp):
CTTCAAAATGA
Found at i:7683837 original size:24 final size:25
Alignment explanation
Indices: 7683810--7683857 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
7683800 GTTCTTGATT
*
7683810 CCTAGTTTCGTTTT-TTATTTTTAC
1 CCTAGTTTCATTTTATTATTTTTAC
* *
7683834 CCTATTTTCATTTTATTTTTTTTA
1 CCTAGTTTCATTTTATTATTTTTA
7683858 TTTTTCGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.15, C:0.15, G:0.04, T:0.67
Consensus pattern (25 bp):
CCTAGTTTCATTTTATTATTTTTAC
Found at i:7687454 original size:27 final size:27
Alignment explanation
Indices: 7687423--7687627 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
7687413 ATATTGAGTC
* * *
7687423 CGCACACTCAGTGCTATATCA-TCAACT
1 CGCACACTTAGTGCTACAT-AGTCAAAT
* *
7687450 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7687477 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7687505 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7687532 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7687559 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7687586 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7687613 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7687628 GTACAATTTA
Statistics
Matches: 156, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.84
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7695514 original size:27 final size:27
Alignment explanation
Indices: 7695455--7695660 Score: 245
Period size: 27 Copynumber: 7.6 Consensus size: 27
7695445 ATATTGAGTC
* * *
7695455 CGCACACTCAGTGCTATAATCA-TCAACT
1 CGCACACTTAGTGCTA-CAT-AGTCAAAT
* *
7695483 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7695510 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7695538 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7695565 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7695592 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7695619 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7695646 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7695661 GTACAATTTA
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 116 0.74
28 39 0.25
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7699440 original size:19 final size:20
Alignment explanation
Indices: 7699416--7699454 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7699406 AATGTTCTTT
*
7699416 CATTCTTT-ACATTTTTTTC
1 CATTCTTTCAAATTTTTTTC
7699435 CATTCTTTCAAATTTTTTTC
1 CATTCTTTCAAATTTTTTTC
7699455 TGCCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.62
Consensus pattern (20 bp):
CATTCTTTCAAATTTTTTTC
Found at i:7703184 original size:132 final size:132
Alignment explanation
Indices: 7701706--7703126 Score: 1851
Period size: 132 Copynumber: 10.8 Consensus size: 132
7701696 GTGGAGCAAG
* * *
7701706 TTGAAGATTTTAGATCTTGTCT-CCTCAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTAC
1 TTGAAGATTTCAGATCTTGTCTCCCT-AAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTAC
* * * *
7701770 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAGCAGCGAAAT
65 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
7701835 AGA
130 AGA
* * * ** * * * * * *
7701838 TTGAAGATTACAGATCTTATCTTCCTGCGTAGACAGTGAAGCAGATCGAAGATGGTGAATTTTAC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAG-TAGTGGAGCAGATCAAAGATGGCGGATTTTAC
* * **
7701903 CTCCCTGTGGTTACAGTGGAGTACATTGAAACTGGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
65 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
7701968 AGA
130 AGA
* * * * *
7701971 TTGAAGATTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCAAGGATAGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
*
7702036 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
7702101 GA
131 GA
* * *
7702103 TTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * * *
7702168 TCCCTGTGGTTACAGTAGAGTACATTGAA-CCTAGTAATTCTACTTCCCTGTGCAGTAGTGGAAT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCC-AGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
7702232 AGA
130 AGA
* * * * * * *
7702235 TTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGCGCATCAAATCAAAGATGGTGAATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * * * * * *
7702300 TCACTGTGGTTACAGTAGAGTATATTGAAGCCAGTAATTCTACTTCTCTGGGCCGCAGCGGAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
7702365 GA
131 GA
* * * *
7702367 TTAAAGATTTCAGATCTTGCCTCCCTAAGCAGTACTGGAGCAGATCGAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * * * *
7702432 TCCCTAAAGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGAAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
7702497 GA
131 GA
* * * *
7702499 TTGAAGATTTTAGATCTTGCCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * ** * **
7702564 TACCTGAAGTTGTAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAACGGAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
7702629 GA
131 GA
* * *
7702631 TTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCGAGGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * * * **
7702696 TCTCGGAAGTTGCAGTGGAGTACATTGAAGCCAACAATTCTA-TCTCCCTGGGCAGCAGTGGAAT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAAT
7702760 AGA
130 AGA
** * * *
7702763 TTGAAGATTTCAGATCTTCCCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * * * *
7702828 TCTCTGAAGTTGCAGTGGAGTACATTGAAGCCAATAATTCTA-TCTCCCTAGGCAGCAGTGGAAT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAAT
7702892 AGA
130 AGA
* * *
7702895 TTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* * * *
7702960 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATTTCCTTGGGCAACAGTGGAATT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
7703025 GA
131 GA
* * * **
7703027 TTGAAGATTTCAGATCTTGTCTCTCTAAGCAGTGGTGGAGCAGATCAAAGATAGTAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
* *
7703092 TCCATGTGGTTACAGTGGAGTACATTGAAGCCAGT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
7703127 TACCTTATTT
Statistics
Matches: 1156, Mismatches: 127, Indels: 12
0.89 0.10 0.01
Matches are distributed among these distances:
131 3 0.00
132 1029 0.89
133 124 0.11
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
GA
Found at i:7704056 original size:24 final size:25
Alignment explanation
Indices: 7704029--7704076 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
7704019 GTTCTTGATT
*
7704029 CCTAGTTTCGTTTT-TTATTTTTAC
1 CCTAGTTTCATTTTATTATTTTTAC
* *
7704053 CCTATTTTCATTTTATTTTTTTTA
1 CCTAGTTTCATTTTATTATTTTTA
7704077 TTTTTCGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.15, C:0.15, G:0.04, T:0.67
Consensus pattern (25 bp):
CCTAGTTTCATTTTATTATTTTTAC
Found at i:7717767 original size:18 final size:18
Alignment explanation
Indices: 7717717--7717771 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 18
7717707 TTATCAATTG
7717717 AAAATTAA-AAAAATATA
1 AAAATTAATAAAAATATA
* *
7717734 AAAATT--TTAAATTATA
1 AAAATTAATAAAAATATA
*
7717750 TAAATTAATAAAAATATA
1 AAAATTAATAAAAATATA
7717768 AAAA
1 AAAA
7717772 AATTTACATT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
16 12 0.41
17 6 0.21
18 11 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATTAATAAAAATATA
Found at i:7717903 original size:7 final size:7
Alignment explanation
Indices: 7717869--7717918 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
7717859 CTTTTTAGTA
7717869 TATATAT
1 TATATAT
7717876 T-TATAAT
1 TATAT-AT
*
7717883 T-TTTAT
1 TATATAT
7717889 TA-AT-T
1 TATATAT
7717894 TATATAT
1 TATATAT
7717901 TATATAT
1 TATATAT
7717908 TATATAT
1 TATATAT
7717915 TATA
1 TATA
7717919 AATTTTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 3 0.08
6 9 0.24
7 25 0.68
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATATAT
Found at i:7717991 original size:16 final size:17
Alignment explanation
Indices: 7717972--7718004 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7717962 TTTAATGGTA
*
7717972 CATAATTTTAT-ATTTT
1 CATAAATTTATAATTTT
7717988 CATAAATTTATAATTTT
1 CATAAATTTATAATTTT
7718005 ATATTGTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
CATAAATTTATAATTTT
Found at i:7719894 original size:20 final size:20
Alignment explanation
Indices: 7719862--7719900 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7719852 ATTTAATGGT
7719862 TATATTTAAATATT-TAAAA
1 TATATTTAAATATTCTAAAA
*
7719881 TATAGTTTATATATTCTAAA
1 TATA-TTTAAATATTCTAAA
7719901 TAAATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TATATTTAAATATTCTAAAA
Found at i:7746719 original size:17 final size:18
Alignment explanation
Indices: 7746697--7746738 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
7746687 TTGGATGTAC
*
7746697 TTTTTAATTTTTCAA-AT
1 TTTTTAATTTTTAAATAT
7746714 TTTTTAATTTTTAAATAT
1 TTTTTAATTTTTAAATAT
7746732 TTTTTAA
1 TTTTTAA
7746739 GATGGCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTAATTTTTAAATAT
Found at i:7747685 original size:3 final size:3
Alignment explanation
Indices: 7747677--7747703 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7747667 ACTCCCAATT
7747677 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
7747704 TATTATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7747947 original size:15 final size:16
Alignment explanation
Indices: 7747929--7747965 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7747919 ATAATTAAAG
7747929 AATAAATATAAAT-AT
1 AATAAATATAAATGAT
7747944 AATAAA-ATAAATGAT
1 AATAAATATAAATGAT
7747959 AA-AAATA
1 AATAAATA
7747966 CAAAACAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AATAAATATAAATGAT
Found at i:7747970 original size:20 final size:20
Alignment explanation
Indices: 7747929--7747970 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7747919 ATAATTAAAG
* *
7747929 AATAAATATAAATATAATAA
1 AATAAATATAAAAATAACAA
7747949 AATAAATGATAAAAAT-ACAA
1 AATAAAT-ATAAAAATAACAA
7747969 AA
1 AA
7747971 CAAGAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AATAAATATAAAAATAACAA
Found at i:7749126 original size:15 final size:15
Alignment explanation
Indices: 7749106--7749136 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7749096 ATAATAATAT
7749106 TTATTAAATATTTAA
1 TTATTAAATATTTAA
*
7749121 TTATTAATTATTTAA
1 TTATTAAATATTTAA
7749136 T
1 T
7749137 ATTTTTTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATTAAATATTTAA
Found at i:7752692 original size:13 final size:13
Alignment explanation
Indices: 7752674--7752698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7752664 GATATAGAAA
7752674 AATATTTTAAAAT
1 AATATTTTAAAAT
7752687 AATATTTTAAAA
1 AATATTTTAAAA
7752699 AAAAGGGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATATTTTAAAAT
Found at i:7761536 original size:17 final size:19
Alignment explanation
Indices: 7761502--7761538 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
7761492 TTATTTAAGT
7761502 ATAAATTATTATAAAATCA
1 ATAAATTATTATAAAATCA
7761521 ATAAATTA-TA-AAAATCA
1 ATAAATTATTATAAAATCA
7761538 A
1 A
7761539 CTGATCTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAATTATTATAAAATCA
Done.