Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 25 of 218
Found at i:8310332 original size:25 final size:25
Alignment explanation
Indices: 8310300--8310374 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
8310290 TTCTCTCATC
8310300 GCTAGTTCTTTGTTCCTCTGCTGGT
1 GCTAGTTCTTTGTTCCTCTGCTGGT
* * *
8310325 GTTGGTTCTTTGTTCCTCTACTGGT
1 GCTAGTTCTTTGTTCCTCTGCTGGT
8310350 GCTAGTTCTTTGTTCCTCTGCTGGT
1 GCTAGTTCTTTGTTCCTCTGCTGGT
8310375 TATTTGTTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.04, C:0.23, G:0.24, T:0.49
Consensus pattern (25 bp):
GCTAGTTCTTTGTTCCTCTGCTGGT
Found at i:8312532 original size:18 final size:18
Alignment explanation
Indices: 8312509--8312574 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
8312499 AAAATATGAG
* *
8312509 AAATGATGTTCCCATTTT
1 AAATGATGTTCACATTTC
8312527 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
8312545 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
8312563 AAATGATGTTCA
1 AAATGATGTTCA
8312575 AATTGATGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:8319252 original size:5 final size:5
Alignment explanation
Indices: 8319242--8319269 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8319232 ATATTTATGT
8319242 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
8319270 AGAATCCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:8319564 original size:13 final size:13
Alignment explanation
Indices: 8319546--8319576 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8319536 ATTGATAAAG
*
8319546 AATAATTTCATTT
1 AATAATTTCATTA
8319559 AATAATTTCATTA
1 AATAATTTCATTA
8319572 AATAA
1 AATAA
8319577 GTGAACCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (13 bp):
AATAATTTCATTA
Found at i:8321805 original size:19 final size:20
Alignment explanation
Indices: 8321767--8321810 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
8321757 CCTTAATTTG
8321767 TTTTATTTATAAGATTATTA
1 TTTTATTTATAAGATTATTA
*
8321787 TTTTATTTATAA-TTTATTA
1 TTTTATTTATAAGATTATTA
8321806 TTTTA
1 TTTTA
8321811 ATAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTATTTATAAGATTATTA
Found at i:8324210 original size:110 final size:109
Alignment explanation
Indices: 8324013--8324326 Score: 482
Period size: 110 Copynumber: 2.9 Consensus size: 109
8324003 TACGCATACT
* * *
8324013 AATTTCGAAATAAGGCAATGTTTTGCGTTCGGAAATTCGAGAAAACGTGTCTTAATGTGCTGGGT
1 AATTTCAAAATAAGGCAATGTTTTGCGTTCGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGT
*
8324078 TTCGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAA
66 TTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTT-AAA
* *
8324123 AATTTCAAAATAAGGCAATGTTTTGCGTTCGGAAATTTGAGAAAACGTGCCCTAATGTGCTGTGT
1 AATTTCAAAATAAGGCAATGTTTTGCGTTCGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGT
8324188 TTCGATTTTTCTCGTTCGACC--A-A---AAATATCCTTTTAAA
66 TTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAA
**
8324226 AATTTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGT
1 AATTTCAAAATAAGGCAATGTTTTGCGTTCGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGT
*
8324291 TTCGA--TTTCTCGTTCGACCAAATGGCCAAATATCCT
66 TTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCT
8324327 CCTAAATCTT
Statistics
Matches: 187, Mismatches: 11, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
101 14 0.07
103 70 0.37
104 12 0.06
107 10 0.05
108 1 0.01
110 80 0.43
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (109 bp):
AATTTCAAAATAAGGCAATGTTTTGCGTTCGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGT
TTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAA
Found at i:8324557 original size:22 final size:22
Alignment explanation
Indices: 8324514--8324558 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
8324504 TCGTGGACCA
* *
8324514 AAATTGTTGTTTTAATAAAATC
1 AAATTGTTGTATTAAAAAAATC
8324536 AAATTGTT-TATTAAAAACAATC
1 AAATTGTTGTATTAAAAA-AATC
8324558 A
1 A
8324559 CTTTTCGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AAATTGTTGTATTAAAAAAATC
Found at i:8333350 original size:14 final size:15
Alignment explanation
Indices: 8333326--8333355 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8333316 CACCGCCCCA
8333326 TCAACAAAATAAAAT
1 TCAACAAAATAAAAT
8333341 TCAA-AAAATAAAAT
1 TCAACAAAATAAAAT
8333355 T
1 T
8333356 TATTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (15 bp):
TCAACAAAATAAAAT
Found at i:8333506 original size:17 final size:16
Alignment explanation
Indices: 8333481--8333522 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
8333471 TTTTAAAATT
*
8333481 ATAAAAAAAATTAGAA
1 ATAAAAAAAATGAGAA
8333497 ATATAAAAAAATGAGAA
1 ATA-AAAAAAATGAGAA
8333514 ATAAAAAAA
1 ATAAAAAAA
8333523 TTCAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (16 bp):
ATAAAAAAAATGAGAA
Found at i:8340345 original size:19 final size:20
Alignment explanation
Indices: 8340295--8340346 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
8340285 AAAATGATAA
8340295 AATCAAGTT-AAAATGGTTTC
1 AATCAAGTTAAAAAT-GTTTC
** *
8340315 AATTGAGGTAAAAAT-TTTC
1 AATCAAGTTAAAAATGTTTC
8340334 AATCAAGTTAAAA
1 AATCAAGTTAAAA
8340347 CTATTTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
19 14 0.56
20 6 0.24
21 5 0.20
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (20 bp):
AATCAAGTTAAAAATGTTTC
Found at i:8340426 original size:19 final size:21
Alignment explanation
Indices: 8340402--8340445 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
8340392 GTATCGGTAG
8340402 TTTTC-AAAA-TATCAATACC
1 TTTTCAAAAAGTATCAATACC
*
8340421 TTTTCAAAAAGTATCGATACC
1 TTTTCAAAAAGTATCAATACC
8340442 TTTT
1 TTTT
8340446 ACCAAGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 4 0.18
21 13 0.59
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (21 bp):
TTTTCAAAAAGTATCAATACC
Found at i:8343682 original size:2 final size:2
Alignment explanation
Indices: 8343675--8343706 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8343665 ATATTACCTG
8343675 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8343707 GAATTAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8347601 original size:15 final size:14
Alignment explanation
Indices: 8347566--8347602 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8347556 TAAGAGTATT
8347566 TATTTTATGGAAAA
1 TATTTTATGGAAAA
*
8347580 TAATTTATGGAAAA
1 TATTTTATGGAAAA
8347594 TACTTTTAT
1 TA-TTTTAT
8347603 ATTTTCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.46
Consensus pattern (14 bp):
TATTTTATGGAAAA
Found at i:8353027 original size:21 final size:21
Alignment explanation
Indices: 8353001--8353040 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8352991 AAAAGATATA
*
8353001 TTTGATTTGATGAGTGCAGTC
1 TTTGATTTGATGAATGCAGTC
*
8353022 TTTGATTTTATGAATGCAG
1 TTTGATTTGATGAATGCAG
8353041 CTAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.25, T:0.45
Consensus pattern (21 bp):
TTTGATTTGATGAATGCAGTC
Found at i:8356681 original size:25 final size:25
Alignment explanation
Indices: 8356653--8356710 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
8356643 AATTGCATAG
* *
8356653 TTTGTTTTACATCTCAAATGTATAC
1 TTTGTTTTACATCCCAAATGTACAC
8356678 TTTGTTTTACATCCCAAATGTACAC
1 TTTGTTTTACATCCCAAATGTACAC
*
8356703 TTTTTTTT
1 TTTGTTTT
8356711 TCAATTTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (25 bp):
TTTGTTTTACATCCCAAATGTACAC
Found at i:8358065 original size:40 final size:39
Alignment explanation
Indices: 8358010--8358085 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 39
8358000 TAGCAAAGTG
* *
8358010 AAAACGCGTCCTACAGGGCGCATTTTTATTCTCTCTCTTA
1 AAAACACGTCCTACAGGGCACATTTTTA-TCTCTCTCTTA
8358050 AAAACACGTCCTACAGGGCACATTTTTATCTCTCTC
1 AAAACACGTCCTACAGGGCACATTTTTATCTCTCTC
8358086 CAAAACTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 8 0.24
40 26 0.76
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (39 bp):
AAAACACGTCCTACAGGGCACATTTTTATCTCTCTCTTA
Found at i:8358582 original size:5 final size:5
Alignment explanation
Indices: 8358572--8358599 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8358562 AATAGCATTT
8358572 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
8358600 TTATTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:8358936 original size:16 final size:16
Alignment explanation
Indices: 8358903--8358940 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
8358893 TAAAAGCATC
*
8358903 TTATTTAATAATATTT
1 TTATTTAAAAATATTT
8358919 TTATCTTAAAAATATTT
1 TTAT-TTAAAAATATTT
8358936 TTATT
1 TTATT
8358941 CCAAAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTTAAAAATATTT
Found at i:8358946 original size:17 final size:17
Alignment explanation
Indices: 8358912--8358949 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8358902 CTTATTTAAT
*
8358912 AATATTTTTATCTTAAA
1 AATATTTTTATCTCAAA
8358929 AATATTTTTAT-TCCAAA
1 AATATTTTTATCT-CAAA
8358946 AATA
1 AATA
8358950 CTTCTTAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (17 bp):
AATATTTTTATCTCAAA
Found at i:8363102 original size:13 final size:13
Alignment explanation
Indices: 8363084--8363114 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8363074 ATTTATAATT
8363084 ATTTAGTGATAAC
1 ATTTAGTGATAAC
*
8363097 ATTTAGTGATAAT
1 ATTTAGTGATAAC
8363110 ATTTA
1 ATTTA
8363115 AAATTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (13 bp):
ATTTAGTGATAAC
Found at i:8366968 original size:46 final size:45
Alignment explanation
Indices: 8366899--8367270 Score: 451
Period size: 46 Copynumber: 8.6 Consensus size: 45
8366889 TTTGAGTACT
*
8366899 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCACTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
* * *
8366945 TTTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
*
8366991 TCTGATCAAGTGAAAAAGTGAT-A-----AG--T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
* *
8367027 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
*
8367073 TCTGATCAAGTGAAAAAGTGATAA---GT-G-CTA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
*
8367109 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCC-TAGCTACACTTA
* *
8367155 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCC-TAGCTACACTTA
8367201 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
*
8367246 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
8367271 ATCATATGTA
Statistics
Matches: 288, Mismatches: 18, Indels: 43
0.83 0.05 0.12
Matches are distributed among these distances:
36 58 0.20
37 2 0.01
38 1 0.00
39 1 0.00
40 5 0.02
41 1 0.00
42 5 0.02
43 14 0.05
44 6 0.02
45 20 0.07
46 175 0.61
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
Found at i:8367022 original size:36 final size:36
Alignment explanation
Indices: 8366981--8367135 Score: 184
Period size: 36 Copynumber: 4.0 Consensus size: 36
8366971 GGTAGCATTA
8366981 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
8367017 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
8367062 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
8367099 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
8367135 G
1 G
8367136 TTAGCCTTAG
Statistics
Matches: 103, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
36 65 0.63
37 2 0.02
40 2 0.02
42 2 0.02
45 2 0.02
46 30 0.29
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:8367033 original size:82 final size:81
Alignment explanation
Indices: 8366935--8367270 Score: 460
Period size: 82 Copynumber: 4.0 Consensus size: 81
8366925 GGTAGCACTA
* *
8366935 GCTACACTTATTTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAA
8367000 GTGAAAAAGTGATAAGT
65 GTGAAAAAGTGATAAGT
*
8367017 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAA
8367082 GTGAAAAAGTGATAAGT
65 GTGAAAAAGTGATAAGT
* *
8367099 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAA
*
8367164 GTGAGAAAGTGATAAGTGGT
65 GTGAAAAAGTGATAA---GT
*
8367184 AGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCT
1 -G-C-TA-C-A--CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCT
* *
8367249 GATC-AG-GGACAAGTGATAAGT
59 GATCAAGTGAAAAAGTGATAAGT
8367270 G
1 G
8367271 ATCATATGTA
Statistics
Matches: 229, Mismatches: 14, Indels: 19
0.87 0.05 0.07
Matches are distributed among these distances:
82 152 0.66
83 1 0.00
85 3 0.01
86 3 0.01
87 1 0.00
88 2 0.01
89 10 0.04
90 3 0.01
91 20 0.09
92 34 0.15
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (81 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAG
TGAAAAAGTGATAAGT
Found at i:8367263 original size:128 final size:126
Alignment explanation
Indices: 8366899--8367270 Score: 433
Period size: 128 Copynumber: 2.9 Consensus size: 126
8366889 TTTGAGTACT
* * *
8366899 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCAC-TAGCTACACTTATTTGATCAAGTGAGAAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTTAGCTACACTTATCTGATCAAGTGAAAAAG
*
8366963 TGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTA
65 TGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAG-GGAAAAGTGATAAGTGCTACACTTA
* *
8367027 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
8367092 GATAA---GT-GC-TA--T--ACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCT
66 GATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGGGA-AAAGTGAT-A-----AG---T-GCT
8367148 ACACTTA
120 ACACTTA
* * *
8367155 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGT
* *
8367220 GATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGACAAGTGATAAGTG
66 GATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGGGAAAAGTGATAAGTG
8367271 ATCATATGTA
Statistics
Matches: 209, Mismatches: 14, Indels: 45
0.78 0.05 0.17
Matches are distributed among these distances:
117 1 0.00
118 23 0.11
119 1 0.00
120 1 0.00
122 2 0.01
124 4 0.02
125 3 0.01
126 1 0.00
127 1 0.00
128 139 0.67
129 2 0.01
131 2 0.01
132 2 0.01
133 2 0.01
134 1 0.00
135 8 0.04
136 4 0.02
137 12 0.06
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (126 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGGGAAAAGTGATAAGTGCTACACTTA
Found at i:8369294 original size:24 final size:24
Alignment explanation
Indices: 8369262--8369338 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
8369252 CACCAGCCAC
8369262 ATTTTAGAGGTGTATAGTAAGTAT
1 ATTTTAGAGGTGTATAGTAAGTAT
8369286 ATTTTAGAGGTGTATAGTAAGTAT
1 ATTTTAGAGGTGTATAGTAAGTAT
* *
8369310 ATATTAGAGGTGTATAGTAAGTGT
1 ATTTTAGAGGTGTATAGTAAGTAT
8369334 ATTTT
1 ATTTT
8369339 TCGACTATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (24 bp):
ATTTTAGAGGTGTATAGTAAGTAT
Found at i:8373086 original size:13 final size:13
Alignment explanation
Indices: 8373068--8373122 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
8373058 AATTTAGAAT
8373068 TATTTAGTGATAA
1 TATTTAGTGATAA
8373081 TATTTAGTGATAA
1 TATTTAGTGATAA
*
8373094 TATTTA--GA-AT
1 TATTTAGTGATAA
*
8373104 TATTCAGTGATAA
1 TATTTAGTGATAA
8373117 TATTTA
1 TATTTA
8373123 AGAAAAATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 6 0.17
11 2 0.06
12 2 0.06
13 25 0.71
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:8385641 original size:24 final size:25
Alignment explanation
Indices: 8385587--8385742 Score: 113
Period size: 24 Copynumber: 6.4 Consensus size: 25
8385577 TTTACCTCTT
* * * *
8385587 ATGAGCATCCCGTTACATGGCTCTC
1 ATGAGCTTCCCGATATATGGCTCGC
*
8385612 ACGAGCTTCCCGATAT-TGGCTCGC
1 ATGAGCTTCCCGATATATGGCTCGC
** * **
8385636 ATGAGCTTTTCGAT-TACGGCTCTT
1 ATGAGCTTCCCGATATATGGCTCGC
* *
8385660 ATGAGCTTCCCG-TTTATGGCTCGT
1 ATGAGCTTCCCGATATATGGCTCGC
* * *
8385684 TTGAGCTTCCTGATA-ATTGGCTTGC
1 ATGAGCTTCCCGATATA-TGGCTCGC
* * *
8385709 AAGAGCTTCCCGTTATATGGCTCAC
1 ATGAGCTTCCCGATATATGGCTCGC
8385734 ATGAGCTTC
1 ATGAGCTTC
8385743 TAGTTACATG
Statistics
Matches: 99, Mismatches: 27, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
23 2 0.02
24 52 0.53
25 44 0.44
26 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGATATATGGCTCGC
Found at i:8385729 original size:25 final size:25
Alignment explanation
Indices: 8385589--8385770 Score: 93
Period size: 25 Copynumber: 7.4 Consensus size: 25
8385579 TACCTCTTAT
* * * *
8385589 GAGCATCCCGTTACATGGCTCTCAC
1 GAGCTTCCCGTTATATGGCTCGCAA
* *
8385614 GAGCTTCCCGATAT-TGGCTCGCAT
1 GAGCTTCCCGTTATATGGCTCGCAA
** * * ** *
8385638 GAGCTTTTCGAT-TACGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCGCAA
***
8385662 GAGCTTCCCGTT-TATGGCTCGTTT
1 GAGCTTCCCGTTATATGGCTCGCAA
* * *
8385686 GAGCTTCCTGATA-ATTGGCTTGCAA
1 GAGCTTCCCGTTATA-TGGCTCGCAA
* *
8385711 GAGCTTCCCGTTATATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCGCAA
** * *
8385736 GAGCTTCTAGTTACATGGCTCGAAA
1 GAGCTTCCCGTTATATGGCTCGCAA
*
8385761 GAACTTCCCG
1 GAGCTTCCCG
8385771 ATTACATGCT
Statistics
Matches: 117, Mismatches: 36, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
23 1 0.01
24 54 0.46
25 61 0.52
26 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCGCAA
Found at i:8385755 original size:50 final size:49
Alignment explanation
Indices: 8385598--8385770 Score: 142
Period size: 50 Copynumber: 3.5 Consensus size: 49
8385588 TGAGCATCCC
* * *
8385598 GTTACATGGCTCTCACGAGCTTCCCGATAT-TGGCTCGCATGAGCTTTT
1 GTTACATGGCTCTCAAGAGCTTCCCGTTATATGGCTCGCATGAGCTTCT
* * **
8385646 CGATTAC--GGCTCTTATGAGCTTCCCGTT-TATGGCTCGTTTGAGCTTCCT
1 -G-TTACATGGCTCTCAAGAGCTTCCCGTTATATGGCTCGCATGAGCTT-CT
* *
8385695 GATA-ATTGGCT-TGCAAGAGCTTCCCGTTATATGGCTCACATGAGCTTCT
1 GTTACA-TGGCTCT-CAAGAGCTTCCCGTTATATGGCTCGCATGAGCTTCT
** *
8385744 AGTTACATGGCTCGAAAGAACTTCCCG
1 -GTTACATGGCTCTCAAGAGCTTCCCG
8385771 ATTACATGCT
Statistics
Matches: 97, Mismatches: 16, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
47 3 0.03
48 34 0.35
49 21 0.22
50 38 0.39
51 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (49 bp):
GTTACATGGCTCTCAAGAGCTTCCCGTTATATGGCTCGCATGAGCTTCT
Found at i:8388403 original size:11 final size:11
Alignment explanation
Indices: 8388371--8388403 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8388361 TTTTTTTAAT
*
8388371 AATTAAAGTTT
1 AATTAAAGTTA
8388382 AATTAAA-TTA
1 AATTAAAGTTA
8388392 AATTAAAGTTA
1 AATTAAAGTTA
8388403 A
1 A
8388404 TAAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (11 bp):
AATTAAAGTTA
Found at i:8388414 original size:20 final size:21
Alignment explanation
Indices: 8388371--8388418 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8388361 TTTTTTTAAT
* **
8388371 AATTAAAGTTTAATTAAATTA
1 AATTAAAGTTTAATAAAAGAA
8388392 AATTAAAG-TTAATAAAAGAA
1 AATTAAAGTTTAATAAAAGAA
8388412 AATTAAA
1 AATTAAA
8388419 AAGGTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
AATTAAAGTTTAATAAAAGAA
Found at i:8389680 original size:24 final size:24
Alignment explanation
Indices: 8389644--8389708 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
8389634 CAAGTAAACT
*
8389644 TGAATGATTTTGATTAAATATACA
1 TGAATGATCTTGATTAAATATACA
**
8389668 TGAATGATCTTGATTGGATATACA
1 TGAATGATCTTGATTAAATATACA
** *
8389692 CAAATGATCTTTATTAA
1 TGAATGATCTTGATTAA
8389709 TTCTTAATGA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (24 bp):
TGAATGATCTTGATTAAATATACA
Found at i:8392118 original size:43 final size:42
Alignment explanation
Indices: 8391969--8392127 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
8391959 AATGTGACAG
*
8391969 CGTGTAAGACCACGTCTGGGACGTTGGCCTCG-ATTTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTT-A-A-TTA
* * * * * *
8392013 CGTGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTAATTA
* *
8392055 TGTGTAAGACC-CTATCTGGGACAG-TGGCATCGTTATTTAATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTAATTA
*
8392098 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
8392128 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
42 28 0.31
43 31 0.34
44 29 0.32
45 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTAATTA
Found at i:8394082 original size:6 final size:6
Alignment explanation
Indices: 8394071--8394195 Score: 250
Period size: 6 Copynumber: 20.8 Consensus size: 6
8394061 TGAGGGGTGT
8394071 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
8394119 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
8394167 TACATA TACATA TACATA TACATA TACAT
1 TACATA TACATA TACATA TACATA TACAT
8394196 TATTTTTTGG
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 119 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
TACATA
Found at i:8412952 original size:27 final size:28
Alignment explanation
Indices: 8412922--8413018 Score: 114
Period size: 27 Copynumber: 3.6 Consensus size: 28
8412912 CTTATTGGTG
8412922 AATCATGAAAGAAAAGTCTTTGT-A-GCA
1 AATCATGAAAGAAAAGTCTTTGTGACG-A
*
8412949 AATCATGAAAGGAAAA-CCTTTGTGACGA
1 AATCATGAAA-GAAAAGTCTTTGTGACGA
*
8412977 AA-CATGAAAGGAAAGTCTTTGTGACGA
1 AATCATGAAAGAAAAGTCTTTGTGACGA
*
8413004 AA-CATGAAAGGAAAG
1 AATCATGAAAGAAAAG
8413019 AGGAAAGTCT
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.06
27 49 0.78
28 9 0.14
29 1 0.02
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (28 bp):
AATCATGAAAGAAAAGTCTTTGTGACGA
Found at i:8413047 original size:34 final size:34
Alignment explanation
Indices: 8412985--8413052 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
8412975 GAAACATGAA
* *
8412985 AGGAAAGTCTTTGTGACGAAACATGAAAGGAAAG
1 AGGAAAGTCTTTGTGACGAAACACGAAAGAAAAG
* * *
8413019 AGGAAAGTCTTTTTGGCGAAATACGAAAGAAAAG
1 AGGAAAGTCTTTGTGACGAAACACGAAAGAAAAG
8413053 CCTTTGTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (34 bp):
AGGAAAGTCTTTGTGACGAAACACGAAAGAAAAG
Found at i:8417764 original size:86 final size:86
Alignment explanation
Indices: 8417664--8417898 Score: 362
Period size: 86 Copynumber: 2.7 Consensus size: 86
8417654 ATAATGTTCC
* * * *
8417664 AAATGCTTGTTTGTATATAATATTATACAACTCTTATCCTACAAGATGAGGAACATGCTTTTTGG
1 AAATGCTTATTTGTATATAATATCATACAACTCTTATCCTACAAGATGAGCAACATGCTTTTTAG
8417729 GGTTATTTTTGAAATATGACT
66 GGTTATTTTTGAAATATGACT
* * * * *
8417750 AAATGCTTACTTGTATATAATATCGTACAACTCTTATTCTACAATATGAGTAACATGCTTTTTAG
1 AAATGCTTATTTGTATATAATATCATACAACTCTTATCCTACAAGATGAGCAACATGCTTTTTAG
8417815 GGTTATTTTTGAAATATGACT
66 GGTTATTTTTGAAATATGACT
* * *
8417836 AAATGCTTATTTGTATATAATATCATACAGCTCTTATCGTACAAGATGAGCAACATGTTTTTT
1 AAATGCTTATTTGTATATAATATCATACAACTCTTATCCTACAAGATGAGCAACATGCTTTTT
8417899 TTGGGGGGCT
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 133 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (86 bp):
AAATGCTTATTTGTATATAATATCATACAACTCTTATCCTACAAGATGAGCAACATGCTTTTTAG
GGTTATTTTTGAAATATGACT
Found at i:8420496 original size:30 final size:30
Alignment explanation
Indices: 8420462--8420523 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
8420452 GTATCATCTC
* *
8420462 AAATTCGAATCTTGCTGCATGAATCAATTG
1 AAATTCGAATCCTACTGCATGAATCAATTG
* *
8420492 AAATTTGTATCCTACTGCATGAATCAATTG
1 AAATTCGAATCCTACTGCATGAATCAATTG
8420522 AA
1 AA
8420524 GCAAATTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (30 bp):
AAATTCGAATCCTACTGCATGAATCAATTG
Found at i:8426490 original size:21 final size:21
Alignment explanation
Indices: 8426465--8426508 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8426455 ATCTTCGAGG
8426465 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
8426486 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
8426507 AT
1 AT
8426509 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:8426514 original size:19 final size:19
Alignment explanation
Indices: 8426464--8426519 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
8426454 AATCTTCGAG
8426464 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8426483 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
8426504 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
8426520 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8426526 original size:22 final size:23
Alignment explanation
Indices: 8426477--8426542 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
8426467 ATGCAATCTT
*
8426477 AGATATGATATATGCAATCTT---
1 AGATATGAT-TATGTAATCTTAGA
8426498 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
8426520 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
8426543 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:8426552 original size:22 final size:23
Alignment explanation
Indices: 8426508--8426552 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8426498 AGATATGATA
*
8426508 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
8426531 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
8426553 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:8432097 original size:44 final size:44
Alignment explanation
Indices: 8432043--8432409 Score: 350
Period size: 44 Copynumber: 8.4 Consensus size: 44
8432033 GTGAAAAAGT
* * * *
8432043 AGATCATGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
8432087 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
8432130 AGATCTTGTCTTCCCATATTGGTGACGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGCG-TGAAGTAGATCGAAGATAGC
* * *
8432175 AGATCTTGTCTTCATGTATTGGCGTGAAGTTGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
8432219 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * *
8432262 AAATCTTGTCTTCCCATATTGGTGGCGAATTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * *
8432307 ATATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
8432351 AGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* *
8432394 AGATCTTATCTCCCTA
1 AGATCTTGTCTTCCTA
8432410 AGCAGTAGTG
Statistics
Matches: 267, Mismatches: 48, Indels: 17
0.80 0.14 0.05
Matches are distributed among these distances:
42 1 0.00
43 60 0.22
44 161 0.60
45 45 0.17
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (44 bp):
AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
Found at i:8432400 original size:132 final size:132
Alignment explanation
Indices: 8432038--8432400 Score: 636
Period size: 132 Copynumber: 2.8 Consensus size: 132
8432028 AATCAGTGAA
* * *
8432038 AAAGTAGATCATGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
8432103 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAAGTAGATCGA
8432168 AG
131 AG
*
8432170 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTTGATCGAAGATAGCAGATCCTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
* * *
8432235 TATTGGTAGGAAGTGGATCGAAGATGCAAATCTTGTCTTCCCATATTGGTGGCGAATTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAAGTAGATCGA
8432300 AG
131 AG
* *
8432302 AAAGCATATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
*
8432367 TATTGGTAGGAAGTGGATCGAAGATGTAGATCTT
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
8432401 ATCTCCCTAA
Statistics
Matches: 219, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 219 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAAGTAGATCGA
AG
Found at i:8432860 original size:262 final size:263
Alignment explanation
Indices: 8432386--8432940 Score: 871
Period size: 262 Copynumber: 2.1 Consensus size: 263
8432376 GAAGTGGATC
* * *
8432386 GAAGA-TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAATATTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGAAAATATTATCTT
* * * ** * *
8432450 TCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGTCTTGTTTCCCTGAGCAGCAGCAGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCCTGAGCAGCAGCAGAGAACG
8432515 TCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAAAATCTTATC
131 TCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAAAATCTTATC
* * * *
8432580 TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGTCTTGTCT-CTGAGCAACAGTGGAGAAG
196 TTTCCAAGATAATGGGAAGCAGATTTAAACCACAAAGCCTTGTCTCCTGAGCAACAGCGGAGAAG
8432644 GTT
261 GTT
*
8432647 GAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGAAAATATTATCTT
* *
8432712 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCCTGAGTAGCAGCGGAGAACG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCCTGAGCAGCAGCAGAGAACG
* * * *
8432777 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGAAAATCTTATC
131 TCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAAAATCTTATC
* * *
8432842 TTTCCAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAATAGCGGAGTA
196 TTTCCAAGATAATGGGAAGCAGATTTAAACCACAAAGCCTTGTCT-CCTGAGCAACAGCGGAGAA
8432907 GGTT
260 GGTT
8432911 GAAGATTGTAGATCTTATCTCCCTAAGCAA
1 GAAGATTGTAGATCTTATCTCCCTAAGCAA
8432941 CAGCGGAGTA
Statistics
Matches: 267, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
261 5 0.02
262 213 0.80
264 49 0.18
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (263 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGAAAATATTATCTT
TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCCTGAGCAGCAGCAGAGAACG
TCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAAAATCTTATC
TTTCCAAGATAATGGGAAGCAGATTTAAACCACAAAGCCTTGTCTCCTGAGCAACAGCGGAGAAG
GTT
Found at i:8432951 original size:132 final size:132
Alignment explanation
Indices: 8432386--8432939 Score: 835
Period size: 132 Copynumber: 4.2 Consensus size: 132
8432376 GAAGTGGATC
* * * *
8432386 GAAGA-TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAATATTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGAAAATCTTATCTT
* * * * * * *
8432450 TCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGTCTTGTTTCCCTGAGCAGCAGCAGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGG
*
8432515 TC
131 TT
*
8432517 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGAAAATCTTATCTT
* *
8432582 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGTCTTGTCT--CTGAGCAACAGTGGAGAAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGG
8432645 TT
131 TT
* *
8432647 GAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGAAAATCTTATCTT
* * * *
8432712 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCCTGAGTAGCAGCGGAGAACG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGG
8432777 TT
131 TT
* *
8432779 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGAAAATCTTATCTT
* * * * *
8432844 TCCAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAATAGCGGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGG
8432909 TT
131 TT
8432911 GAAGATTGTAGATCTTATCTCCCTAAGCA
1 GAAGATTGTAGATCTTATCTCCCTAAGCA
8432940 ACAGCGGAGT
Statistics
Matches: 385, Mismatches: 35, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
130 120 0.31
131 5 0.01
132 260 0.68
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGAAAATCTTATCTT
TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGG
TT
Found at i:8432974 original size:176 final size:176
Alignment explanation
Indices: 8432781--8433115 Score: 562
Period size: 176 Copynumber: 1.9 Consensus size: 176
8432771 AGAACGTTGA
* * *
8432781 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGAAAATCTTATCTTTC
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGAAAATCTTATCTTTC
* *
8432846 CAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAATAGCGGAGTAGGTT
66 CAAGATAATGAGAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTT
8432911 GAAGATTGTAGATCTTATCTCCCTAAGCAACAGCGGAGTAGGTTAC
131 GAAGATTGTAGATCTTATCTCCCTAAGCAACAGCGGAGTAGGTTAC
* *
8432957 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCAAATCTTATCTTTC
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGAAAATCTTATCTTTC
* * * * *
8433022 TAAGATAGTGAGAAGCATATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTT
66 CAAGATAATGAGAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTT
8433087 GAAGATTGTAGATCTTATCTCCCTAAGCA
131 GAAGATTGTAGATCTTATCTCCCTAAGCA
8433116 GTAGTGGAGC
Statistics
Matches: 147, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
176 147 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (176 bp):
AGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGAAAATCTTATCTTTC
CAAGATAATGAGAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTT
GAAGATTGTAGATCTTATCTCCCTAAGCAACAGCGGAGTAGGTTAC
Found at i:8433064 original size:132 final size:132
Alignment explanation
Indices: 8432928--8433464 Score: 878
Period size: 132 Copynumber: 4.1 Consensus size: 132
8432918 GTAGATCTTA
* * *
8432928 TCTCCCTAAGCAACAGCGGAGTAGGTT-ACAGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGA
1 TCTCCCTGAGCAGCAGCGGAGTAGGTTGA-AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGA
** * * *
8432992 GCAGATTGAAGACGGCAAATCTTATCTTTCTAAGATAGTGAGAAGCATATTTAAGCCACCAAGCC
65 GCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCC
8433057 TTG
130 TTG
8433060 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
8433125 CAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCT
66 CAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCT
8433190 TG
131 TG
*
8433192 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
*
8433257 CAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCT
66 CAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCT
8433322 TG
131 TG
* * * *
8433324 TCTCCTTGAGCAGCAGCGGAGAAGGTTAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
* ** **
8433389 CAGATCAAAAACGAAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAATCT
66 CAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCT
*
8433454 TA
131 TG
8433456 TCTCCCTGA
1 TCTCCCTGA
8433465 AGTTGCAGAG
Statistics
Matches: 381, Mismatches: 23, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
132 380 1.00
133 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (132 bp):
TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
CAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCT
TG
Found at i:8433186 original size:308 final size:308
Alignment explanation
Indices: 8432628--8433247 Score: 1008
Period size: 308 Copynumber: 2.0 Consensus size: 308
8432618 CTTGTCTCTG
* *
8432628 AGCAACAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAA
1 AGCAACAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAATAGTAGAGCAGATCAA
*
8432693 AGACGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCC
66 AGACGGAAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCC
* *
8432758 TGAGTAGCAGCGGAGAACGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
131 TGAGCAGCAGCGGAGAACGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* *
8432823 GAAGATGGAAAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCTC
196 AAAGACGGAAAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCTC
* *
8432888 CCTGAGCAATAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
261 CCTGAGCAACAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTA
* * **
8432936 AGCAACAGCGGAGTAGGTT-ACAGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATTG
1 AGCAACAGCGGAGAAGGTTGA-AGATTGTAGATCTTATCTCCCTAAGCAATAGTAGAGCAGATCA
* * * * *
8433000 AAGACGGCAAATCTTATCTTTCTAAGATAGTGAGAAGCATATTTAAGCCACCAAGCCTTGTCTCC
65 AAGACGGAAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTGCCTCC
* *
8433065 CTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
130 CTGAGCAGCAGCGGAGAACGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * *
8433130 CAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCT
195 CAAAGACGGAAAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCT
*
8433195 CCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTA
260 CCCTGAGCAACAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTA
8433244 AGCA
1 AGCA
8433248 GTAGTGGAGC
Statistics
Matches: 287, Mismatches: 24, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
307 1 0.00
308 286 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (308 bp):
AGCAACAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAATAGTAGAGCAGATCAA
AGACGGAAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTGCCTCCC
TGAGCAGCAGCGGAGAACGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
AAAGACGGAAAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAACCACCAAGCCTTGTCTC
CCTGAGCAACAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTA
Found at i:8433276 original size:44 final size:44
Alignment explanation
Indices: 8432396--8433462 Score: 207
Period size: 44 Copynumber: 24.3 Consensus size: 44
8432386 GAAGATGTAG
** *
8432396 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * * * **
8432440 ATATTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGTCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAA
* * * * * ** * * ** ** * *
8432484 GTCTTGTTTCCCTGAGCAGCAGCAGAGTAGGTCGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * **
8432528 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * **
8432572 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAA
* * ** * * * ** * *
8432615 AGTCTTGTCT--CTGAGCAACAGTGGAGAAGGTTGAAGATTGTAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * *
8432658 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * **
8432702 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAA
* ** * * * * * * ** * *
8432745 AGCCTTGCCTCCCTGAGTAGCAGCGGAGAACG-TTGAAGATTGTAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCA-GATTAAAGACGGCAA
* ** * *
8432790 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * *
8432834 ATCTTATCTTTCC-AAG-A-TAATGGGAAGCAGATTTAAACCAC--CAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTAAA-GACGGCAA
** * * * * * * * ** * *
8432878 GCCTTGTCTCCCTGAGCAATAGCGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
** * * * * ** * *
8432922 ATCTTATCTCCCTAAGCAACAGCGGAGTAGGTTACAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* *
8432966 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
** * * * **
8433010 ATCTTATCTTTCTAAG-A-TAGTGAGAAGCATATTTAAGCCACCAA
1 ATCTTATCTCCCTAAGCAGTAGTG-G-AGCAGATTAAAGACGGCAA
** * * * * * * * ** * *
8433054 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
*
8433098 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * * **
8433142 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAA
** * * * * * * * ** *
8433186 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
*
8433230 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * **
8433274 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAA
* * * * * * * * **** *
8433317 AGCCTTGTCTCCTTGAGCAGCAGCGGAGAAGGTTAAAGATTATAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * **
8433362 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACGAAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
* * * **
8433406 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAA
8433450 ATCTTATCTCCCT
1 ATCTTATCTCCCT
8433463 GAAGTTGCAG
Statistics
Matches: 707, Mismatches: 258, Indels: 116
0.65 0.24 0.11
Matches are distributed among these distances:
41 1 0.00
42 50 0.07
43 65 0.09
44 531 0.75
45 46 0.07
46 14 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
Found at i:8433983 original size:19 final size:19
Alignment explanation
Indices: 8433959--8434056 Score: 115
Period size: 19 Copynumber: 4.8 Consensus size: 19
8433949 AATCTTCGAG
8433959 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
8433978 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
8433997 GATATATGCAATCTTAGATAT
1 G--ATATGTAATCTTAGATAT
8434018 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
*
8434040 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
8434057 GATTTAATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
19 30 0.43
20 3 0.04
21 19 0.27
22 8 0.11
23 10 0.14
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:8434005 original size:21 final size:21
Alignment explanation
Indices: 8433960--8434022 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
8433950 ATCTTCGAGG
*
8433960 ATATGTAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
8433979 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
8434000 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
8434021 AT
1 AT
8434023 GTAATCTTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 18 0.44
21 23 0.56
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:8434066 original size:22 final size:23
Alignment explanation
Indices: 8434022--8434066 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8434012 AGATATGATA
*
8434022 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
8434045 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
8434067 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:8436761 original size:3 final size:3
Alignment explanation
Indices: 8436753--8436795 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8436743 AAAAATAAAA
8436753 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8436796 GAAGAAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8440149 original size:9 final size:9
Alignment explanation
Indices: 8440108--8440156 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
8440098 TTTGGTTAAA
*
8440108 AATTAATCG
1 AATTAACCG
8440117 AATT-ACCTG
1 AATTAACC-G
*
8440126 AATTACCCG
1 AATTAACCG
8440135 AATTAACCG
1 AATTAACCG
*
8440144 AATTAACCA
1 AATTAACCG
8440153 AATT
1 AATT
8440157 GAATCACTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 2 0.06
9 30 0.88
10 2 0.06
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:8440821 original size:18 final size:18
Alignment explanation
Indices: 8440746--8440809 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
8440736 ATTAGAAAAA
* *
8440746 AAAAATTTAAAAATT-TT
1 AAAAATATAAAATTTATT
8440763 -AAAATAATAAAATTTATT
1 AAAAAT-ATAAAATTTATT
8440781 AAAAATATAAAATTTATT
1 AAAAATATAAAATTTATT
8440799 AAAAATTATAA
1 AAAAA-TATAA
8440810 TTTTTTATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.12
17 7 0.17
18 19 0.46
19 10 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATATAAAATTTATT
Found at i:8440859 original size:19 final size:18
Alignment explanation
Indices: 8440746--8440868 Score: 76
Period size: 18 Copynumber: 6.7 Consensus size: 18
8440736 ATTAGAAAAA
8440746 AAAAATT-TAAAAATTT-T
1 AAAAATTAT-AAAATTTAT
*
8440763 -AAAATAATAAAATTTATT
1 AAAAATTATAAAATTTA-T
8440781 AAAAA-TATAAAATTTATT
1 AAAAATTATAAAATTTA-T
**
8440799 AAAAATTATAATTTTTTAT
1 AAAAATTATAA-AATTTAT
* **
8440818 AAAAAATGTAAAAAAAATA-
1 -AAAAAT-TATAAAATTTAT
*
8440837 AAAAATTGTAAAATTTTAT
1 AAAAATTATAAAA-TTTAT
*
8440856 AAAAATCATAAAA
1 AAAAATTATAAAA
8440869 AATTAACAAC
Statistics
Matches: 81, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
16 12 0.15
17 6 0.07
18 26 0.32
19 21 0.26
20 12 0.15
21 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (18 bp):
AAAAATTATAAAATTTAT
Found at i:8441085 original size:10 final size:10
Alignment explanation
Indices: 8441070--8441122 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
8441060 TTTTCTTATG
8441070 ATTTTATAAA
1 ATTTTATAAA
8441080 ATTTTATAAA
1 ATTTTATAAA
8441090 ATTTTAT---
1 ATTTTATAAA
*
8441097 ATTTCTATATA
1 ATTT-TATAAA
8441108 ATTGTTATAAA
1 ATT-TTATAAA
8441119 ATTT
1 ATTT
8441123 CACAATTTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
7 4 0.11
8 3 0.08
10 18 0.49
11 11 0.30
12 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (10 bp):
ATTTTATAAA
Found at i:8441706 original size:21 final size:21
Alignment explanation
Indices: 8441682--8441724 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8441672 GTCTAATAAA
8441682 ATATTGAAAATATATA-ATTTT
1 ATATT-AAAATATATATATTTT
* *
8441703 ATATTAATATTTATATATTTT
1 ATATTAAAATATATATATTTT
8441724 A
1 A
8441725 ATAATTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
ATATTAAAATATATATATTTT
Found at i:8449001 original size:324 final size:324
Alignment explanation
Indices: 8448412--8449045 Score: 1214
Period size: 324 Copynumber: 2.0 Consensus size: 324
8448402 GATTTGAATA
8448412 TGAAATGTAATAAATTGATGATTAAATTCATTTATATAGATTCGAAAAGACCAAATAAGAAGTTA
1 TGAAATGTAATAAATTGATGATTAAATTCATTTATATAGATTCGAAAAGACCAAATAAGAAGTTA
8448477 GATCGAGGAAAAGAAAAAGTGTCAGATTAGTAAATTTTCATACACGAGCAAGTGTTGAGGTAAGT
66 GATCGAGGAAAAGAAAAAGTGTCAGATTAGTAAATTTTCATACACGAGCAAGTGTTGAGGTAAGT
* *
8448542 TTGTGTAACTAAATTGAGAATTTATGTGTTAATTGAATTGTATGCATGTATTTTTATTATTTACA
131 TTGTGTAACTAAATTGAGAATTTATGTGTTAATTGAATTGTATGCATGTATTTGTATTATTGACA
8448607 TGTATATAAAATTGACTGAATATCCGATAATGTCCAACAAGTATAAAATCTCGTATGAATGAACG
196 TGTATATAAAATTGACTGAATATCCGATAATGTCCAACAAGTATAAAATCTCGTATGAATGAACG
8448672 AAATTCAATAGATACAGAATTTCCAGTATTGGTTATGGTCTTGCATATGTGAGTTGGGTTGATT
261 AAATTCAATAGATACAGAATTTCCAGTATTGGTTATGGTCTTGCATATGTGAGTTGGGTTGATT
*
8448736 TGAAATGTAATAAATTGATGATTAAATTCATTTATATAGATTCGAAAAGACCAAATAAGGAGTTA
1 TGAAATGTAATAAATTGATGATTAAATTCATTTATATAGATTCGAAAAGACCAAATAAGAAGTTA
*
8448801 GATCGAGGAAAAGAAAAAGTGTCAGATTAGTAGATTTTCATACACGAGCAAGTGTTGAGGTAAGT
66 GATCGAGGAAAAGAAAAAGTGTCAGATTAGTAAATTTTCATACACGAGCAAGTGTTGAGGTAAGT
8448866 TTGTGTAACTAAATTGAGAATTTATGTGTTAATTGAATTGTATGCATGTATTTGTATTATTGACA
131 TTGTGTAACTAAATTGAGAATTTATGTGTTAATTGAATTGTATGCATGTATTTGTATTATTGACA
*
8448931 TGTATATAAAATTGACTGAATATCCGATAATGTCCAACAAGTATAAAATCTTGTATGAATGAACG
196 TGTATATAAAATTGACTGAATATCCGATAATGTCCAACAAGTATAAAATCTCGTATGAATGAACG
*
8448996 AAATTCAATAGATACAGAATTTCCCGTATTGGTTATGGTCTTGCATATGT
261 AAATTCAATAGATACAGAATTTCCAGTATTGGTTATGGTCTTGCATATGT
8449046 TGCAGAAACA
Statistics
Matches: 304, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
324 304 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.35
Consensus pattern (324 bp):
TGAAATGTAATAAATTGATGATTAAATTCATTTATATAGATTCGAAAAGACCAAATAAGAAGTTA
GATCGAGGAAAAGAAAAAGTGTCAGATTAGTAAATTTTCATACACGAGCAAGTGTTGAGGTAAGT
TTGTGTAACTAAATTGAGAATTTATGTGTTAATTGAATTGTATGCATGTATTTGTATTATTGACA
TGTATATAAAATTGACTGAATATCCGATAATGTCCAACAAGTATAAAATCTCGTATGAATGAACG
AAATTCAATAGATACAGAATTTCCAGTATTGGTTATGGTCTTGCATATGTGAGTTGGGTTGATT
Found at i:8449226 original size:25 final size:27
Alignment explanation
Indices: 8449196--8449259 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
8449186 TTAGCTCTTA
8449196 TGAGCTTCTCGATT-A-TGGCTCTTTG
1 TGAGCTTCTCGATTAATTGGCTCTTTG
*
8449221 TGAGCTTCT-TATTAATTGGCTCTTTG
1 TGAGCTTCTCGATTAATTGGCTCTTTG
*
8449247 TGAGCTTCCCGAT
1 TGAGCTTCTCGAT
8449260 ATGACTCGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 3 0.09
25 10 0.30
26 18 0.55
27 2 0.06
ACGTcount: A:0.14, C:0.20, G:0.22, T:0.44
Consensus pattern (27 bp):
TGAGCTTCTCGATTAATTGGCTCTTTG
Found at i:8449313 original size:24 final size:24
Alignment explanation
Indices: 8449285--8449333 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8449275 TTCCTGATAT
* *
8449285 ATGGCTATCCAGAGCTTCCCGTTA
1 ATGGCCATCCAGAGCTACCCGTTA
* *
8449309 ATGGCCCTTCAGAGCTACCCGTTA
1 ATGGCCATCCAGAGCTACCCGTTA
8449333 A
1 A
8449334 AGGCACGCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (24 bp):
ATGGCCATCCAGAGCTACCCGTTA
Found at i:8455749 original size:20 final size:22
Alignment explanation
Indices: 8455711--8455759 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
8455701 AATTAGGTTT
8455711 ATTT-AAAATAAAAACATTA-A
1 ATTTAAAAATAAAAACATTATA
*
8455731 ATTTAAAAATAGAAA-ATTATA
1 ATTTAAAAATAAAAACATTATA
8455752 ATATTAAA
1 AT-TTAAA
8455760 TATCTAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTTAAAAATAAAAACATTATA
Found at i:8456065 original size:23 final size:22
Alignment explanation
Indices: 8456025--8456072 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
8456015 CCTTGAAATT
*
8456025 TAATTACTATTTTAGAATTTTA
1 TAATTACTATTATAGAATTTTA
*
8456047 TAATTACATATTATGGAATTTTA
1 TAATTAC-TATTATAGAATTTTA
8456070 TAA
1 TAA
8456073 AAAATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (22 bp):
TAATTACTATTATAGAATTTTA
Found at i:8457542 original size:86 final size:86
Alignment explanation
Indices: 8457397--8457565 Score: 302
Period size: 86 Copynumber: 2.0 Consensus size: 86
8457387 GTCGTTCCTG
** *
8457397 GCTTTCAACCGAACGGTCTTCTCCGCTAGTCTTGTACCATGAACTGCTTCGAGTGTGGGCTCGAA
1 GCTTTCAACCGAACGGTCTTCTCCGCTAGTCTTGTACCACAAACTGCTTCGAGTGTGGGCTCAAA
8457462 CGATTCGAATCAAACACAAAT
66 CGATTCGAATCAAACACAAAT
*
8457483 GCTTTCAACCGAACGGTCTTCTCCGCTATTCTTGTACCACAAACTGCTTCGAGTGTGGGCTCAAA
1 GCTTTCAACCGAACGGTCTTCTCCGCTAGTCTTGTACCACAAACTGCTTCGAGTGTGGGCTCAAA
8457548 CGATTCGAATCAAACACA
66 CGATTCGAATCAAACACA
8457566 GATACAAAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (86 bp):
GCTTTCAACCGAACGGTCTTCTCCGCTAGTCTTGTACCACAAACTGCTTCGAGTGTGGGCTCAAA
CGATTCGAATCAAACACAAAT
Found at i:8458195 original size:6 final size:6
Alignment explanation
Indices: 8458184--8458227 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
8458174 AAACCATAAA
8458184 TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT TT
1 TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT TT
8458228 GGAGAAAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCATT
Found at i:8458247 original size:51 final size:51
Alignment explanation
Indices: 8458205--8458326 Score: 167
Period size: 51 Copynumber: 2.4 Consensus size: 51
8458195 TTTCATTTTC
*
8458205 ATTTTCATTT-TC-ATTTTCATTTTGGAGAAAACCACATTCATTTTCAAAT
1 ATTTCCATTTCTCTATTTTCATTTTGGAGAAAACCACATTCATTTTCAAAT
* * *
8458254 GTTTCCATTTCTCTATTTTTATTTTGGAGAAAGCCACATTCATTTTCAAAT
1 ATTTCCATTTCTCTATTTTCATTTTGGAGAAAACCACATTCATTTTCAAAT
* *
8458305 GTTTCCCATTTCTCCATTTTCA
1 ATTT-CCATTTCTCTATTTTCA
8458327 CAATTTCTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
49 8 0.12
50 2 0.03
51 39 0.61
52 15 0.23
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.48
Consensus pattern (51 bp):
ATTTCCATTTCTCTATTTTCATTTTGGAGAAAACCACATTCATTTTCAAAT
Found at i:8465024 original size:22 final size:22
Alignment explanation
Indices: 8464994--8465039 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8464984 CATGGTACTA
**
8464994 TGAGGATGGATATTGACAATTG
1 TGAGGATGGATATCAACAATTG
*
8465016 TGAGTATGGATATCAACAATTG
1 TGAGGATGGATATCAACAATTG
8465038 TG
1 TG
8465040 GTTACATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (22 bp):
TGAGGATGGATATCAACAATTG
Found at i:8469937 original size:21 final size:21
Alignment explanation
Indices: 8469911--8469966 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
8469901 AACAGCGGTG
*
8469911 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
8469932 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
8469953 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
8469967 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:8476720 original size:15 final size:15
Alignment explanation
Indices: 8476700--8476807 Score: 51
Period size: 15 Copynumber: 7.2 Consensus size: 15
8476690 TTTATGGAAA
8476700 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
8476715 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
**
8476729 AGTCAAAGATATTAGT
1 A-TCAAAGATATGGGT
* * **
8476745 ATCAAATAT-TAGAA
1 ATCAAAGATATGGGT
*
8476759 AGTCAAAGATATAGGT
1 A-TCAAAGATATGGGT
* **
8476775 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
8476789 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
8476805 ATC
1 ATC
8476808 GAGATATTGG
Statistics
Matches: 64, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
14 10 0.16
15 43 0.67
16 11 0.17
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:8476729 original size:30 final size:30
Alignment explanation
Indices: 8476693--8476807 Score: 167
Period size: 30 Copynumber: 3.8 Consensus size: 30
8476683 ATCCATATTT
*
8476693 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
**
8476723 ATGGAAAGTCAAAGATATTAGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
* * *
8476753 TTAGAAAGTCAAAGATATAGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
8476783 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
8476808 GAGATATTGG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 76 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.26
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:8481392 original size:15 final size:15
Alignment explanation
Indices: 8481372--8481479 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
8481362 TTTATGGAAA
8481372 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
8481387 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
8481401 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
8481417 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
8481431 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
8481447 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
8481461 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
8481477 ATC
1 ATC
8481480 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:8481401 original size:30 final size:30
Alignment explanation
Indices: 8481365--8481479 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
8481355 ATCCATATTT
*
8481365 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
8481395 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
8481425 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
8481455 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
8481480 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:8483306 original size:35 final size:35
Alignment explanation
Indices: 8483260--8483366 Score: 196
Period size: 35 Copynumber: 3.1 Consensus size: 35
8483250 CATACCTTAG
8483260 CCAATTAGCTCTGGATCATTGCTTCTAGTGTAGCT
1 CCAATTAGCTCTGGATCATTGCTTCTAGTGTAGCT
8483295 CCAATTAGCTCTGGATCATTGCTTCTAGTGTAGCT
1 CCAATTAGCTCTGGATCATTGCTTCTAGTGTAGCT
* *
8483330 CCAATTAGCTCCGGATCATTGCTTCTAGTGCAGCT
1 CCAATTAGCTCTGGATCATTGCTTCTAGTGTAGCT
8483365 CC
1 CC
8483367 TCCTTGCCAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 70 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (35 bp):
CCAATTAGCTCTGGATCATTGCTTCTAGTGTAGCT
Found at i:8487902 original size:30 final size:30
Alignment explanation
Indices: 8487853--8487927 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
8487843 CAAACAACAT
* *
8487853 TCAATTAAGCCCTCGATTGAGTTTAAGTGC
1 TCAATTAAGCCCTCAATTGAATTTAAGTGC
* * ***
8487883 TCAATTGAGCTCTCAATTGAATTTAAGCAA
1 TCAATTAAGCCCTCAATTGAATTTAAGTGC
8487913 TCAATTAAGCCCTCA
1 TCAATTAAGCCCTCA
8487928 TCCCTTGACA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (30 bp):
TCAATTAAGCCCTCAATTGAATTTAAGTGC
Found at i:8488904 original size:20 final size:20
Alignment explanation
Indices: 8488879--8488918 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8488869 CGTAAAATGA
*
8488879 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
*
8488899 TTTCTGTAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
8488919 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:8488908 original size:34 final size:35
Alignment explanation
Indices: 8488864--8488930 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8488854 CAGTAAAATA
*
8488864 TTTTCCGTAAAATGATTT-CTGAAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
* *
8488898 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
8488931 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:8489722 original size:26 final size:24
Alignment explanation
Indices: 8489684--8489737 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 24
8489674 TTCTCGAATG
* *
8489684 TTTTCTATTATTTTAATATTTTCCAT
1 TTTTCTATAATTTTAA-A-TTTCAAT
*
8489710 TTTTTTATAATTTTAAATTTCAAT
1 TTTTCTATAATTTTAAATTTCAAT
8489734 TTTT
1 TTTT
8489738 AAATAGATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 10 0.40
25 1 0.04
26 14 0.56
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTCTATAATTTTAAATTTCAAT
Found at i:8490177 original size:24 final size:24
Alignment explanation
Indices: 8490150--8490195 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8490140 AATAACAAAA
8490150 TAAAATTTATAAATTTGATTAACT
1 TAAAATTTATAAATTTGATTAACT
* **
8490174 TAAAATTTTTCGATTTGATTAA
1 TAAAATTTATAAATTTGATTAA
8490196 ATACCTAACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (24 bp):
TAAAATTTATAAATTTGATTAACT
Found at i:8492786 original size:16 final size:16
Alignment explanation
Indices: 8492762--8492792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8492752 TATGTACCGA
*
8492762 AAATTTAAATAAATAT
1 AAATATAAATAAATAT
8492778 AAATATAAATAAATA
1 AAATATAAATAAATA
8492793 GATAACAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATATAAATAAATAT
Found at i:8494353 original size:40 final size:40
Alignment explanation
Indices: 8494307--8494458 Score: 234
Period size: 40 Copynumber: 3.8 Consensus size: 40
8494297 GTGTTTTTAG
*
8494307 TCTGCTCCACTACTTCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* *
8494347 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGA
*
8494389 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
8494429 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
8494459 TCTGTAATCT
Statistics
Matches: 102, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
39 4 0.04
40 59 0.58
41 4 0.04
42 31 0.30
43 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
Found at i:8494400 original size:82 final size:83
Alignment explanation
Indices: 8494296--8494463 Score: 302
Period size: 82 Copynumber: 2.0 Consensus size: 83
8494286 GGATGAGACT
* * *
8494296 TGTGTTTTTAGTCTGCTCCACTACTTCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTACT
1 TGTGGTTTTAGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCTCCACTACT
8494361 GCTTAGGGAGATAAGATC
66 GCTTAGGGAGATAAGATC
8494379 TGTGGTTTT-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCTCCACTACT
1 TGTGGTTTTAGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCTCCACTACT
8494443 GCTTAGGGAGATAAGATC
66 GCTTAGGGAGATAAGATC
8494461 TGT
1 TGT
8494464 AATCTTCACT
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
82 74 0.90
83 8 0.10
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (83 bp):
TGTGGTTTTAGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCTCCACTACT
GCTTAGGGAGATAAGATC
Found at i:8494608 original size:44 final size:44
Alignment explanation
Indices: 8494560--8494680 Score: 162
Period size: 40 Copynumber: 2.8 Consensus size: 44
8494550 CATCTTCGAC
* * *
8494560 CTGCTCCACTATTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-T
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTATGT-GAT
*
8494604 CTGCTCCACTACTGCTTAGGGAGATAAGA-C---TTGATGTGAT
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTATGTGAT
8494644 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTT
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTT
8494681 TCTTCACTCT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
39 1 0.01
40 34 0.51
41 1 0.01
43 1 0.01
44 30 0.45
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (44 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTATGTGAT
Found at i:8494943 original size:132 final size:132
Alignment explanation
Indices: 8494724--8495176 Score: 613
Period size: 132 Copynumber: 3.4 Consensus size: 132
8494714 ATAGAGTTAT
* * * * * * *
8494724 CGGCTTCAATGTACTCCGCTGT-A-GTCAGGGAGGTAAAATTTGCCATCTTTGATTTGCTTCGCT
1 CGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT
* ** ** * * *
8494787 GCCAAATACAGGAAGGTAAGATCTGCAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAA
66 -AC-TGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAA
* *
8494852 CTAC
129 TTTC
8494856 CGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT
1 CGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT
*
8494921 ACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCATTGTTGCCCAGGGAAGTAGAATT
66 ACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATT
8494986 TC
131 TC
* * * *
8494988 TGGCTTCAATGTACTCCACTATAATCTCAGGGAGGTAAAATCTGCCATATTCGATCTGCTCTACT
1 CGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT
*
8495053 ACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATT
66 ACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATT
8495118 TC
131 TC
** * * * *
8495120 TAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATTTTCGATCT
1 CGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTTCGATCT
8495177 TTTAAATTAC
Statistics
Matches: 289, Mismatches: 30, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
132 253 0.88
133 2 0.01
134 34 0.12
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (132 bp):
CGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT
ACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATT
TC
Found at i:8495108 original size:44 final size:44
Alignment explanation
Indices: 8494803--8495108 Score: 124
Period size: 44 Copynumber: 7.0 Consensus size: 44
8494793 TACAGGAAGG
* * *
8494803 TAAGATCTGCAATCTTCAATCTATTCCACTGTTGCCCAGGGA-A
1 TAAGATCTGAAATCTTCAATCTACTCCACTGTTGCTCAGGGAGA
* *** * *
8494846 GT-AGAACT-ACCGGCTTCAATGTACTCCACTGTAAT-CTCAGGGAGG
1 -TAAGATCTGA-AATCTTCAATCTACTCCACTGT--TGCTCAGGGAGA
* ** * * ** * *
8494891 TAAAATCTGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGA
1 TAAGATCTGAAATCTTCAATCTACTCCACTGTTGCTCAGGGAGA
* * *
8494935 TAAGATCTGAAATCTTCAATCTATTCCATTGTTGCCCAGGGAAGTA
1 TAAGATCTGAAATCTTCAATCTACTCCACTGTTGCTCAGGG-AG-A
* ** * * * *
8494981 GAATTTCTG---GCTTCAATGTACTCCACTATAAT-CTCAGGGAGG
1 TAAGATCTGAAATCTTCAATCTACTCCACTGT--TGCTCAGGGAGA
* ** * * * * ** *
8495023 TAAAATCTGCCATATTCGATCTGCTCTACTACTGCTTAGGGAGA
1 TAAGATCTGAAATCTTCAATCTACTCCACTGTTGCTCAGGGAGA
* *
8495067 TAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGA
1 TAAGATCTGAAATCTTCAATCTACTCCACTGTTGCTCAGGGA
8495109 AGTAGAATTT
Statistics
Matches: 179, Mismatches: 68, Indels: 30
0.65 0.25 0.11
Matches are distributed among these distances:
42 6 0.03
43 41 0.23
44 89 0.50
45 36 0.20
46 7 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
TAAGATCTGAAATCTTCAATCTACTCCACTGTTGCTCAGGGAGA
Found at i:8495304 original size:100 final size:100
Alignment explanation
Indices: 8495173--8495548 Score: 524
Period size: 100 Copynumber: 3.8 Consensus size: 100
8495163 GCCATTTTCG
* * * * *
8495173 ATCT-TTTAAATTACAATGTCAGGGAAGCAAGAATCGCCGTCGTAGCTTTAATCTGCTCTACTGT
1 ATCTCTTT-AATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGC
8495237 ACTGCCAGAGAAGTGAGATTCACCGTTGTGGCTTCA
65 ACTGCCAGAGAAGTGAGATTCACCGTTGTGGCTTCA
* *
8495273 ATCTCTTTAATTGCAATGTTGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTACA
1 ATCTCTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCA
** * ** *
8495338 CCACCATG-GAAGTAAGATTTGCCGTTGCGGCTTCA
66 CTGCCA-GAGAAGTGAGATTCACCGTTGTGGCTTCA
* * ** *
8495373 ATCTTTTTAATTGCAATATCAAGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTA
1 ATCTCTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCA
*
8495438 CTGCCAGAGAAGTGAGATTCTCCGTTGTGGCTTCA
66 CTGCCAGAGAAGTGAGATTCACCGTTGTGGCTTCA
*
8495473 ATCTCTTTAATTGCAATGTCGGGGAA-CAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCA
1 ATCTCTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCA
*
8495537 CTGCCAGGGAAG
66 CTGCCAGAGAAG
8495549 GTAACTTCAT
Statistics
Matches: 240, Mismatches: 33, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
99 48 0.20
100 188 0.78
101 4 0.02
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (100 bp):
ATCTCTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCA
CTGCCAGAGAAGTGAGATTCACCGTTGTGGCTTCA
Found at i:8495456 original size:50 final size:50
Alignment explanation
Indices: 8495196--8495548 Score: 185
Period size: 50 Copynumber: 7.1 Consensus size: 50
8495186 CAATGTCAGG
* * *
8495196 GAAGCAAGAATCGCCGTCGTAGCTTTAATCTGCTCTACTGTACTGCCAGA
1 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGCACTGCCAGA
** * * * * * * * *** *
8495246 GAAGTGAGATTCACCGTTGTGGCTTCAATCT-CTTTAATTGCAATGTTGGG
1 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGC-TCAACTGCACTGCCAGA
* * **
8495296 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTACACCACCATG-
1 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGCACTGCCA-GA
* * * ** * ** * * * **
8495346 GAAGTAAGATTTGCCGTTGCGGCTTCAATCTTTTTAATTGCAATATCA-A
1 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGCACTGCCAGA
* *
8495395 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTACTGCCAGA
1 -GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGCACTGCCAGA
** * * * * * * * * * *
8495446 GAAGTGAGATTCTCCGTTGTGGCTTCAATCT-CTTTAATTGCAATGTCGGG
1 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGC-TCAACTGCACTGCCAGA
* * *
8495496 GAA-CAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACTGCCAGG
1 GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGCACTGCCAGA
8495545 GAAG
1 GAAG
8495549 GTAACTTCAT
Statistics
Matches: 206, Mismatches: 88, Indels: 18
0.66 0.28 0.06
Matches are distributed among these distances:
49 37 0.18
50 166 0.81
51 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (50 bp):
GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGCACTGCCAGA
Found at i:8495660 original size:44 final size:43
Alignment explanation
Indices: 8495560--8495827 Score: 227
Period size: 44 Copynumber: 6.2 Consensus size: 43
8495550 TAACTTCATT
* * * *
8495560 GATCTGTTTTCTTCGATCTACTT-CACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCCACCAATATAGGAAGACAA
* * *
8495602 TATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * *
8495645 GACCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
* * * *
8495689 GATCTGCTTTCTCCGATCTACTTCACCACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTT--CCACCAATATAGGAAGACAA
** * * *
8495734 GATCT-CCGTCTTCGATCCACTTCCTACCAATGTAAGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * * * * * *
8495777 GACCGGCTATATTTGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
8495821 GATCTGC
1 GATCTGC
8495828 CTTGGTGACT
Statistics
Matches: 176, Mismatches: 41, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
41 13 0.07
42 8 0.05
43 37 0.21
44 95 0.54
45 22 0.12
46 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
GATCTGCTATCTTCGATCTACTTCCACCAATATAGGAAGACAA
Found at i:8495795 original size:132 final size:129
Alignment explanation
Indices: 8495560--8495827 Score: 401
Period size: 132 Copynumber: 2.1 Consensus size: 129
8495550 TAACTTCATT
* * * *
8495560 GATCTGTTTTCTTCGATCTACTTCACCAGTATGGGAAGACAATATCTGCATCTTCGATCCACTTC
1 GATCTGCTTTCTCCGATCTACTTCACCAGTATGGGAAGACAAGATCTCCATCTTCGATCCACTTC
* * * *
8495625 CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAA
66 CTACCAATATAAGAAGACAAGACCGGCTATATTCGATCTACTTCACACCAATACATGAAGACAA
*
8495689 GATCTGCTTTCTCCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTCCGTCTTCGATCCAC
1 GATCTGCTTTCTCCGATCTACTT---CACCAGTATGGGAAGACAAGATCTCCATCTTCGATCCAC
* * *
8495754 TTCCTACCAATGTAAGAAGACAAGACCGGCTATATTTGATCTACTTCACGCCAATACATGAAGAC
63 TTCCTACCAATATAAGAAGACAAGACCGGCTATATTCGATCTACTTCACACCAATACATGAAGAC
8495819 AA
128 AA
8495821 GATCTGC
1 GATCTGC
8495828 CTTGGTGACT
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
129 21 0.17
132 103 0.83
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (129 bp):
GATCTGCTTTCTCCGATCTACTTCACCAGTATGGGAAGACAAGATCTCCATCTTCGATCCACTTC
CTACCAATATAAGAAGACAAGACCGGCTATATTCGATCTACTTCACACCAATACATGAAGACAA
Found at i:8497385 original size:103 final size:104
Alignment explanation
Indices: 8497141--8497406 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
8497131 GTTGTACATA
** *
8497141 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
8497206 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
8497245 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
8497309 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
8497348 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
8497407 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:8504743 original size:26 final size:26
Alignment explanation
Indices: 8504708--8504757 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
8504698 AATGTGAAAG
*
8504708 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8504734 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
8504758 AGTTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:8504840 original size:103 final size:103
Alignment explanation
Indices: 8504629--8504893 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 103
8504619 GTTGTACATA
** *
8504629 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
8504694 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
*
8504732 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
8504796 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATT-CCCC
* * *
8504835 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
8504894 AATAACGGTT
Statistics
Matches: 148, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
102 25 0.17
103 122 0.82
104 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
Found at i:8507044 original size:20 final size:20
Alignment explanation
Indices: 8507021--8507084 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
8507011 GGCCTCTCCC
*
8507021 TTTTCTATTTTGTTTTT-CTT
1 TTTTCTATTTT-TTTTTGATT
8507041 TTTTCT-TTTCTTTTTTGATT
1 TTTTCTATTT-TTTTTTGATT
* *
8507061 TTTTCTATTTTCTTTTCATT
1 TTTTCTATTTTTTTTTGATT
8507081 TTTT
1 TTTT
8507085 TTTTCAAGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
19 8 0.21
20 27 0.71
21 3 0.08
ACGTcount: A:0.06, C:0.11, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTTCTATTTTTTTTTGATT
Found at i:8507525 original size:8 final size:8
Alignment explanation
Indices: 8507512--8507562 Score: 54
Period size: 8 Copynumber: 6.8 Consensus size: 8
8507502 CCCCAGTAGA
8507512 GTTTTTTT
1 GTTTTTTT
8507520 GTTTTTTT
1 GTTTTTTT
*
8507528 -TTGTTTT
1 GTTTTTTT
*
8507535 G-TTCTTT
1 GTTTTTTT
8507542 -TTTTTTT
1 GTTTTTTT
*
8507549 GTTTTTGT
1 GTTTTTTT
8507557 GTTTTT
1 GTTTTT
8507563 GGTTTTTGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
7 15 0.43
8 20 0.57
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.84
Consensus pattern (8 bp):
GTTTTTTT
Found at i:8507526 original size:7 final size:7
Alignment explanation
Indices: 8507514--8507581 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
8507504 CCAGTAGAGT
8507514 TTTTTTG
1 TTTTTTG
*
8507521 TTTTTTT
1 TTTTTTG
8507528 TTGTTTTG
1 TT-TTTTG
8507536 TTCTTTT-
1 TT-TTTTG
8507543 TTTTTTG
1 TTTTTTG
8507550 TTTTTGTG
1 TTTTT-TG
*
8507558 TTTTTGG
1 TTTTTTG
*
8507565 TTTTTGG
1 TTTTTTG
8507572 TTTTTT-
1 TTTTTTG
8507578 TTTT
1 TTTT
8507582 GCTTCCACTG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
6 8 0.15
7 28 0.53
8 17 0.32
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.84
Consensus pattern (7 bp):
TTTTTTG
Found at i:8507559 original size:22 final size:20
Alignment explanation
Indices: 8507513--8507581 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 20
8507503 CCCAGTAGAG
*
8507513 TTTTTTTGTTT-TTTTTTGT
1 TTTTTTTTTTTGTTTTTTGT
* *
8507532 TTTGTTCTTTT-TTTTTTGT
1 TTTTTTTTTTTGTTTTTTGT
* *
8507551 TTTTGTGTTTTTGGTTTTTGGT
1 TTTT-T-TTTTTTGTTTTTTGT
8507573 TTTTTTTTT
1 TTTTTTTTT
8507582 GCTTCCACTG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
19 19 0.47
20 5 0.12
21 5 0.12
22 11 0.28
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.84
Consensus pattern (20 bp):
TTTTTTTTTTTGTTTTTTGT
Found at i:8507568 original size:25 final size:26
Alignment explanation
Indices: 8507514--8507580 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
8507504 CCAGTAGAGT
*
8507514 TTTTTTGTTTTTTTTTGTTTTGTTC-
1 TTTTTTGTTTGTTTTTGTTTTGTTCG
* *
8507539 TTTTTTTTTTGTTTTTGTGTTT-TTGG
1 TTTTTTGTTTGTTTTTGT-TTTGTTCG
* *
8507565 TTTTTGGTTTTTTTTT
1 TTTTTTGTTTGTTTTT
8507581 TGCTTCCACT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 18 0.53
26 16 0.47
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.84
Consensus pattern (26 bp):
TTTTTTGTTTGTTTTTGTTTTGTTCG
Found at i:8507569 original size:27 final size:29
Alignment explanation
Indices: 8507513--8507582 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
8507503 CCCAGTAGAG
* * *
8507513 TTTTTTTGTTTTTTTTTGTTTTGTTCTTT
1 TTTTTTTGTTTTTGTGTGTTTTGGTCTTT
8507542 TTTTTTTGTTTTTGTGT-TTTTGGT-TTT
1 TTTTTTTGTTTTTGTGTGTTTTGGTCTTT
*
8507569 TGGTTTTT-TTTTTG
1 T-TTTTTTGTTTTTG
8507583 CTTCCACTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 10 0.28
28 11 0.31
29 15 0.42
ACGTcount: A:0.00, C:0.01, G:0.16, T:0.83
Consensus pattern (29 bp):
TTTTTTTGTTTTTGTGTGTTTTGGTCTTT
Found at i:8508947 original size:62 final size:62
Alignment explanation
Indices: 8508840--8509023 Score: 305
Period size: 62 Copynumber: 3.0 Consensus size: 62
8508830 CTAAACTCGA
* *
8508840 CGTACTTTTGGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATG
1 CGTATTTTTGGATTTTAAAAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATG
* *
8508902 CGTATTTTTAGATTTTAAAAAATTTATTCTATGCAATGAAACGTAATGTTGATGCATGAATG
1 CGTATTTTTGGATTTTAAAAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATG
* * *
8508964 CATATTTTTGGATTTTAAAAAATTTATTGTATGCAATAAAATGTAATGTTGATGCATGAA
1 CGTATTTTTGGATTTTAAAAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAA
8509024 AAGATACGTG
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 113 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAAAAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATG
Found at i:8511386 original size:16 final size:16
Alignment explanation
Indices: 8511362--8511392 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8511352 TATGTACCGA
*
8511362 AAATTTAAATAAATAT
1 AAATATAAATAAATAT
8511378 AAATATAAATAAATA
1 AAATATAAATAAATA
8511393 GATAACAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATATAAATAAATAT
Found at i:8513179 original size:14 final size:14
Alignment explanation
Indices: 8513134--8513179 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
8513124 AAAATTATTC
*
8513134 AATTTTTATTAAAA
1 AATTTTTATAAAAA
* * *
8513148 TATTTTTATAATAC
1 AATTTTTATAAAAA
8513162 AATTTTTATAAAAA
1 AATTTTTATAAAAA
8513176 AATT
1 AATT
8513180 GATTGTATTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTTTTATAAAAA
Found at i:8513320 original size:19 final size:19
Alignment explanation
Indices: 8513297--8513389 Score: 73
Period size: 20 Copynumber: 4.8 Consensus size: 19
8513287 AAATTAATAG
*
8513297 TTTTTCACAATCTTTTATAA
1 TTTTTAACAAT-TTTTATAA
*
8513317 TTTTTAATAATTTTTATAA
1 TTTTTAACAATTTTTATAA
* *
8513336 TTTTTTTACAATATTTTAAAA
1 -TTTTTAACAAT-TTTTATAA
* * *
8513357 TTTCTAA-TAGTTTTATAA
1 TTTTTAACAATTTTTATAA
8513375 CTTTTT-ACAATTTTT
1 -TTTTTAACAATTTTT
8513390 TAAAAAAATT
Statistics
Matches: 56, Mismatches: 13, Indels: 9
0.72 0.17 0.12
Matches are distributed among these distances:
18 8 0.14
19 18 0.32
20 23 0.41
21 7 0.12
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (19 bp):
TTTTTAACAATTTTTATAA
Found at i:8513340 original size:9 final size:9
Alignment explanation
Indices: 8513309--8513389 Score: 56
Period size: 10 Copynumber: 8.4 Consensus size: 9
8513299 TTTCACAATC
8513309 TTTTATAAT
1 TTTTATAAT
8513318 TTTTAATAAT
1 TTTT-ATAAT
8513328 TTTTATAATTT
1 TTTTATAA--T
*
8513339 TTTTACAAT
1 TTTTATAAT
*
8513348 ATTTTAAAAT
1 -TTTTATAAT
* *
8513358 TTCTA-ATAG
1 TTTTATA-AT
8513367 TTTTATAACT
1 TTTTATAA-T
*
8513377 TTTTACAAT
1 TTTTATAAT
8513386 TTTT
1 TTTT
8513390 TAAAAAAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
8 1 0.02
9 24 0.41
10 25 0.43
11 8 0.14
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTTATAAT
Found at i:8513341 original size:40 final size:38
Alignment explanation
Indices: 8513297--8513394 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 38
8513287 AAATTAATAG
* * * * *
8513297 TTTTTCACAATCTTTTATAATTTTTAATAATTTTTATAATT
1 TTTTT-ACAATATTTTAAAATTTCTAAT-AGTTTTATAA-C
8513338 TTTTTACAATATTTTAAAATTTCTAATAGTTTTATAAC
1 TTTTTACAATATTTTAAAATTTCTAATAGTTTTATAAC
*
8513376 TTTTTACAATTTTTTAAAA
1 TTTTTACAATATTTTAAAA
8513395 AAATTATACA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 18 0.35
39 9 0.18
40 19 0.37
41 5 0.10
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (38 bp):
TTTTTACAATATTTTAAAATTTCTAATAGTTTTATAAC
Found at i:8516586 original size:29 final size:29
Alignment explanation
Indices: 8516552--8516609 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
8516542 TGAAAAGAGA
8516552 TTGGTCAATAGTGTATGACATGCTTAATG
1 TTGGTCAATAGTGTATGACATGCTTAATG
8516581 TTGGTCAATAGTGTATGACATGCTTAATG
1 TTGGTCAATAGTGTATGACATGCTTAATG
8516610 GCCAAAACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (29 bp):
TTGGTCAATAGTGTATGACATGCTTAATG
Found at i:8517786 original size:19 final size:19
Alignment explanation
Indices: 8517759--8517799 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8517749 TCATATAAGA
8517759 ATAAGAATT-TTATTAAATT
1 ATAAGAATTATT-TTAAATT
*
8517778 ATAATAATTATTTTAAATT
1 ATAAGAATTATTTTAAATT
8517797 ATA
1 ATA
8517800 TTTTAGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATAAGAATTATTTTAAATT
Found at i:8517878 original size:17 final size:17
Alignment explanation
Indices: 8517858--8517891 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8517848 TTTATTAACA
8517858 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8517875 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8517892 TCTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8518080 original size:39 final size:40
Alignment explanation
Indices: 8518037--8518142 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
8518027 TTTCCTTATG
* *
8518037 CTATTACACCTCTATTTCATTCAACCAAACATAAGAA-TA
1 CTATTACGCCTCTATTTCATTCAACCAAACAAAAGAATTA
8518076 CTATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTA
1 CTATTACGCCTCTA-T---TT-CATTCAACCAAACAAAAGAATTA
* *
8518121 CTTTTTACGCCTCTATTCCATT
1 C-TATTACGCCTCTATTTCATT
8518143 ACGCCTCTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
39 13 0.23
40 1 0.02
41 4 0.07
42 1 0.02
43 2 0.04
44 19 0.34
45 4 0.07
46 12 0.21
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.34
Consensus pattern (40 bp):
CTATTACGCCTCTATTTCATTCAACCAAACAAAAGAATTA
Found at i:8518117 original size:44 final size:46
Alignment explanation
Indices: 8518054--8518144 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
8518044 ACCTCTATTT
*
8518054 CATTCAACCAAACATAAGAA-TAC-TATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACTTATTACGCCTCTATTCCATTA
*
8518098 CATTCAACCAAACAAAAGAATTACTTTTTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACTTATTACGCCTCTATTCCATTA
8518144 C
1 C
8518145 GCCTCTATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 19 0.44
45 3 0.07
46 21 0.49
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACTTATTACGCCTCTATTCCATTA
Found at i:8518146 original size:16 final size:16
Alignment explanation
Indices: 8518125--8518160 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8518115 GAATTACTTT
8518125 TTACGCCTCTATTCCA
1 TTACGCCTCTATTCCA
*
8518141 TTACGCCTCTATTCTA
1 TTACGCCTCTATTCCA
8518157 TTAC
1 TTAC
8518161 AGCGAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.33, G:0.06, T:0.42
Consensus pattern (16 bp):
TTACGCCTCTATTCCA
Found at i:8520909 original size:27 final size:27
Alignment explanation
Indices: 8520879--8520932 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8520869 GTTTTTAAGT
8520879 TTAGAGTTTTTAAGTTAAGGGTTAGGG
1 TTAGAGTTTTTAAGTTAAGGGTTAGGG
*
8520906 TTAGGGTTTTTAAGTTAAGGGTTAGGG
1 TTAGAGTTTTTAAGTTAAGGGTTAGGG
8520933 GTTTTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (27 bp):
TTAGAGTTTTTAAGTTAAGGGTTAGGG
Found at i:8520927 original size:21 final size:21
Alignment explanation
Indices: 8520902--8520998 Score: 158
Period size: 21 Copynumber: 4.6 Consensus size: 21
8520892 GTTAAGGGTT
*
8520902 AGGGTTAGGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAATTA
*
8520923 AGGGTTAGGGGTTTTAAATTA
1 AGGGTTAGGGTTTTTAAATTA
8520944 AGGGTTTAGGGTTTTTAAATTA
1 AGGG-TTAGGGTTTTTAAATTA
*
8520966 AGGGTTAGGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAATTA
8520987 AGGGTTAGGGTT
1 AGGGTTAGGGTT
8520999 AGGGTTTTTG
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
21 51 0.72
22 20 0.28
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (21 bp):
AGGGTTAGGGTTTTTAAATTA
Found at i:8520928 original size:15 final size:15
Alignment explanation
Indices: 8520869--8520928 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
8520859 AAGTTTTGGT
* *
8520869 GTTTTTAAGTTTAGA
1 GTTTTTAAGTTAAGG
8520884 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
*
8520899 G---TTAGGGTT-AGG
1 GTTTTTA-AGTTAAGG
8520911 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
8520926 GTT
1 GTT
8520929 AGGGGTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
12 7 0.19
13 3 0.08
14 3 0.08
15 23 0.64
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (15 bp):
GTTTTTAAGTTAAGG
Found at i:8520967 original size:43 final size:42
Alignment explanation
Indices: 8520902--8520998 Score: 158
Period size: 43 Copynumber: 2.3 Consensus size: 42
8520892 GTTAAGGGTT
*
8520902 AGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGGTTTTAAATTA
1 AGGGTTAGGGTTTTTAAATTAAGGGTTAGGGGTTTTAAATTA
* *
8520944 AGGGTTTAGGGTTTTTAAATTAAGGGTTAGGGTTTTTAAGTTA
1 AGGG-TTAGGGTTTTTAAATTAAGGGTTAGGGGTTTTAAATTA
8520987 AGGGTTAGGGTT
1 AGGGTTAGGGTT
8520999 AGGGTTTTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 12 0.24
43 39 0.76
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (42 bp):
AGGGTTAGGGTTTTTAAATTAAGGGTTAGGGGTTTTAAATTA
Found at i:8521056 original size:8 final size:8
Alignment explanation
Indices: 8521043--8521069 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
8521033 AATTTAATTA
8521043 TAAATTTT
1 TAAATTTT
8521051 TAAATTTT
1 TAAATTTT
8521059 TAAATTTT
1 TAAATTTT
8521067 TAA
1 TAA
8521070 TAAATTAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TAAATTTT
Found at i:8523472 original size:51 final size:51
Alignment explanation
Indices: 8523411--8523508 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
8523401 AAATAATTAA
8523411 AAATAGGGATTTAAGAGAAATTTA-AGAGGAAATTGAGAGAAAATTGAAATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGAAAATTGAAATT
* * * *
8523462 AAATATGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGAAAATTGA
8523509 GAAAATAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.26, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGAAAATTGAAATT
Found at i:8526555 original size:7 final size:6
Alignment explanation
Indices: 8526523--8526552 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
8526513 TAATGTATTT
*
8526523 TAAAAT TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
8526553 ATATATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:8527997 original size:313 final size:309
Alignment explanation
Indices: 8527445--8528067 Score: 1146
Period size: 313 Copynumber: 2.0 Consensus size: 309
8527435 AAATCACAAT
8527445 ATTTTTTAAAATATTTTACATTCTCACTCACTGCAAATCTTCATATTTTAAAGTTTCCCATATTT
1 ATTTTTTAAAATATTTTACATTCTCACTCACTGCAAATCTTCATATTTTAAAGTTTCCCATATTT
8527510 TTTCTGATTTTTTATATTTTTGTATTTTCACTTTTCTTACTTTATATGTATTTTCTAAAAAGAAA
66 TTTCTGATTTTTTATATTTTTGTATTTTCACTTTTCTTACTTTATATGTATTTTCTAAAAAGAAA
8527575 ATATATATTTTTAATTTGGAAATTTTATATATTTTCATATATTTTTTTCTGATTTGTTAAAAGTT
131 ATATATATTTTTAATTTGGAAATTTTATATATTTTCATATATTTTTTTCTGATTTGTTAAAAGTT
8527640 TTTCAGATTTTTCTGAATTTGTTTGAAATTTTTTTTTGTATTTTCATTTTTGT-TGTTTTATGTA
196 TTTCAGATTTTTCTGAATTTGTTTGAAATTTTTTTTTGTATTTTCATTTTTGTGTGTTTTATGTA
8527704 -TTTTT-AAAAT-AAAATAAATAAATTTTAATTCTGGAAGTTATATATA
261 TTTTTTAAAAATAAAAATAAATAAATTTTAATTCTGGAAGTTATATATA
8527750 ATTTTTTAAAATATTTTACATTCTCACTCACTGCAAATCTTCATATTTTAAAGTTTCCCATATTT
1 ATTTTTTAAAATATTTTACATTCTCACTCACTGCAAATCTTCATATTTTAAAGTTTCCCATA-TT
8527815 TTTTCTGATTTTTTTATATTTTTGTATTTTCACTTTTCTTAACTTTATATGTATTTTCTAAAAAG
65 TTTTCTGA-TTTTTTATATTTTTGTATTTTCACTTTTCTT-ACTTTATATGTATTTTCTAAAAAG
8527880 AAAATATATATTTTTAATTTCTGGAAATTTTATATAACTTTTCCATATATTTTTTTCTGATTTGT
128 AAAATATATATTTTTAA-TT-TGGAAATTTTATAT-A-TTTT-CATATATTTTTTTCTGATTTGT
8527945 TAAAAGTTTTTCAGATTTTTCTGAATTTGTTTGAAATTTTTTTTTGTATTTTCATTTTTGTGTGT
188 TAAAAGTTTTTCAGATTTTTCTGAATTTGTTTGAAATTTTTTTTTGTATTTTCATTTTTGTGTGT
8528010 TTTATGTATTTTTTAAAAATAAAAATAAATAAATTTTAATTCTGGAAGTTATATATA
253 TTTATGTATTTTTTAAAAATAAAAATAAATAAATTTTAATTCTGGAAGTTATATATA
8528067 A
1 A
8528068 ATCTATATTT
Statistics
Matches: 306, Mismatches: 0, Indels: 12
0.96 0.00 0.04
Matches are distributed among these distances:
305 62 0.20
306 10 0.03
307 31 0.10
308 41 0.13
309 2 0.01
310 14 0.05
311 1 0.00
312 4 0.01
313 83 0.27
314 11 0.04
315 5 0.02
316 5 0.02
317 37 0.12
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (309 bp):
ATTTTTTAAAATATTTTACATTCTCACTCACTGCAAATCTTCATATTTTAAAGTTTCCCATATTT
TTTCTGATTTTTTATATTTTTGTATTTTCACTTTTCTTACTTTATATGTATTTTCTAAAAAGAAA
ATATATATTTTTAATTTGGAAATTTTATATATTTTCATATATTTTTTTCTGATTTGTTAAAAGTT
TTTCAGATTTTTCTGAATTTGTTTGAAATTTTTTTTTGTATTTTCATTTTTGTGTGTTTTATGTA
TTTTTTAAAAATAAAAATAAATAAATTTTAATTCTGGAAGTTATATATA
Found at i:8530348 original size:18 final size:18
Alignment explanation
Indices: 8530327--8530368 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8530317 AATCATAGTA
* *
8530327 ACAGATTTAGATACAGTT
1 ACAGATGTAGATACAGAT
*
8530345 ACAGATGTAGATTCAGAT
1 ACAGATGTAGATACAGAT
8530363 ACAGAT
1 ACAGAT
8530369 ACAAAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (18 bp):
ACAGATGTAGATACAGAT
Found at i:8530379 original size:24 final size:24
Alignment explanation
Indices: 8530329--8530380 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
8530319 TCATAGTAAC
* * * **
8530329 AGATTTAGATACAGTTACAGATGT
1 AGATTCAGATACAGATACAAAAAT
8530353 AGATTCAGATACAGATACAAAAAT
1 AGATTCAGATACAGATACAAAAAT
8530377 AGAT
1 AGAT
8530381 CCTACCCCTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (24 bp):
AGATTCAGATACAGATACAAAAAT
Done.