Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 26 of 218
Found at i:8532784 original size:22 final size:22
Alignment explanation
Indices: 8532735--8532786 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
8532725 TTGGTTGCGG
8532735 TTGAATTTATAAGGAAGGTTAGA
1 TTGAATTTATAAGG-AGGTTAGA
*
8532758 -T-AATTTATAAAGG-GGTTATA
1 TTGAATTTAT-AAGGAGGTTAGA
8532778 TTGAATTTA
1 TTGAATTTA
8532787 AAAAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 6 0.24
21 8 0.32
22 11 0.44
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (22 bp):
TTGAATTTATAAGGAGGTTAGA
Found at i:8535188 original size:107 final size:107
Alignment explanation
Indices: 8534995--8535200 Score: 340
Period size: 107 Copynumber: 1.9 Consensus size: 107
8534985 AAGGAAAAAT
* ** *
8534995 TTTCAAAACGAGGCAATGTTTTGTTTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGGGTTT
1 TTTCAAAACGAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* *
8535060 CGATTTCTCGTTTGACCAAATAGCCAAATATCCTTTCAATAA
66 CGATTTCTCATTCGACCAAATAGCCAAATATCCTTTCAATAA
*
8535102 TTTCAAAACGAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
1 TTTCAAAACGAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTT
*
8535167 CGATTTCTCATTCGACTAAATAGCCAAATATCCT
66 CGATTTCTCATTCGACCAAATAGCCAAATATCCT
8535201 CTTAAAACTT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
107 91 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (107 bp):
TTTCAAAACGAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTT
CGATTTCTCATTCGACCAAATAGCCAAATATCCTTTCAATAA
Found at i:8544080 original size:19 final size:20
Alignment explanation
Indices: 8544056--8544094 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8544046 ATTAATAAGC
8544056 AATACATAT-TTTATTATTA
1 AATACATATGTTTATTATTA
8544075 AATACATATGTTTATTATTA
1 AATACATATGTTTATTATTA
8544095 TTCCACATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (20 bp):
AATACATATGTTTATTATTA
Found at i:8547619 original size:18 final size:18
Alignment explanation
Indices: 8547596--8547631 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8547586 CTTTAGGAAG
8547596 TTCAGTTAGCTCCCACGT
1 TTCAGTTAGCTCCCACGT
8547614 TTCAGTTAGCTCCCACGT
1 TTCAGTTAGCTCCCACGT
8547632 CTTGTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (18 bp):
TTCAGTTAGCTCCCACGT
Found at i:8552233 original size:6 final size:6
Alignment explanation
Indices: 8552222--8552246 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8552212 TTTTCGATTT
8552222 AGAGGG AGAGGG AGAGGG AGAGGG A
1 AGAGGG AGAGGG AGAGGG AGAGGG A
8552247 CGGTGGGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
AGAGGG
Found at i:8552309 original size:27 final size:27
Alignment explanation
Indices: 8552292--8552356 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
8552282 AATTTAAATT
* *
8552292 TATTATTATGT-TTTTAAAAATTTTATG
1 TATTATTATATATTTT-AAAATTTTATA
*
8552319 TATTTTTATATATTTTAAAATTTTATA
1 TATTATTATATATTTTAAAATTTTATA
8552346 TATTATTATAT
1 TATTATTATAT
8552357 CTTGTCAGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (27 bp):
TATTATTATATATTTTAAAATTTTATA
Found at i:8552325 original size:10 final size:10
Alignment explanation
Indices: 8552312--8552440 Score: 60
Period size: 10 Copynumber: 13.2 Consensus size: 10
8552302 TTTTTAAAAA
*
8552312 TTTTATGTAT
1 TTTTATATAT
8552322 TTTTATATA-
1 TTTTATATAT
*
8552331 TTTTA-A-AA
1 TTTTATATAT
8552339 TTTTATATAT
1 TTTTATATAT
* *
8552349 TATTATATCT
1 TTTTATATAT
* * *
8552359 TGTCAGCAATCAT
1 TTTTA--TAT-AT
8552372 TTTT-T-TAT
1 TTTTATATAT
8552380 TTTTATATAT
1 TTTTATATAT
8552390 TTTTA-A-AT
1 TTTTATATAT
8552398 TTATTATTATAT
1 TT-TTA-TATAT
8552410 TTTT-TGA-AT
1 TTTTAT-ATAT
* *
8552419 TTTTTTTTAT
1 TTTTATATAT
8552429 TTTTATATAT
1 TTTTATATAT
8552439 TT
1 TT
8552441 CTTTAATTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 30
0.67 0.10 0.22
Matches are distributed among these distances:
7 1 0.01
8 16 0.18
9 19 0.21
10 42 0.47
11 3 0.03
12 6 0.07
13 3 0.03
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (10 bp):
TTTTATATAT
Found at i:8552400 original size:22 final size:21
Alignment explanation
Indices: 8552375--8552432 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
8552365 CAATCATTTT
8552375 TTTATTTTTATATATTTTTAAA
1 TTTATTTTTATAT-TTTTTAAA
* *
8552397 TTTATTATTATATTTTTTGAA
1 TTTATTTTTATATTTTTTAAA
8552418 TTT-TTTTT-TATTTTT
1 TTTATTTTTATATTTTT
8552433 ATATATTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.21
20 4 0.12
21 10 0.30
22 12 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTATTTTTATATTTTTTAAA
Found at i:8552435 original size:27 final size:29
Alignment explanation
Indices: 8552397--8552451 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
8552387 TATTTTTAAA
8552397 TTTATTATTATAT-TTT-TTGAATTTTTT
1 TTTATTATTATATATTTCTTGAATTTTTT
* *
8552424 TTTATTTTTATATATTTCTTTAATTTTT
1 TTTATTATTATATATTTCTTGAATTTTT
8552452 CTGATTAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 12 0.50
28 3 0.12
29 9 0.38
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (29 bp):
TTTATTATTATATATTTCTTGAATTTTTT
Found at i:8567642 original size:21 final size:21
Alignment explanation
Indices: 8567617--8567662 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
8567607 ACAGTGGTGG
*
8567617 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
* *
8567638 CGGTGAGATTGGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
8567659 CGGT
1 CGGT
8567663 ACAATGGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.11, G:0.35, T:0.30
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:8570250 original size:32 final size:32
Alignment explanation
Indices: 8570197--8570257 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
8570187 CCTTGTTGGG
*
8570197 AAAAATTTGGTTCAAAAACAA-TTTCTTAAGA
1 AAAAATTTGATTCAAAAACAATTTTCTTAAGA
*
8570228 AAAAATTTTGATTCGAAAACAATTTTCTTA
1 AAAAA-TTTGATTCAAAAACAATTTTCTTA
8570258 CACTGCAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 5 0.19
32 14 0.54
33 7 0.27
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (32 bp):
AAAAATTTGATTCAAAAACAATTTTCTTAAGA
Found at i:8570943 original size:16 final size:17
Alignment explanation
Indices: 8570922--8570956 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8570912 AAACATCACA
*
8570922 AATTAATTAA-TTTCTC
1 AATTAAATAATTTTCTC
8570938 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
8570955 AA
1 AA
8570957 CCCAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:8570999 original size:20 final size:20
Alignment explanation
Indices: 8570974--8571013 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8570964 TTAATTTCGT
8570974 TAAAATCATGATAACTTTAC
1 TAAAATCATGATAACTTTAC
8570994 TAAAATCATGATAACTTTAC
1 TAAAATCATGATAACTTTAC
8571014 CGTAAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (20 bp):
TAAAATCATGATAACTTTAC
Found at i:8574448 original size:17 final size:16
Alignment explanation
Indices: 8574404--8574472 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
8574394 TTTGGTTCGC
8574404 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
8574420 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8574436 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
*
8574453 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
8574469 TGTA
1 TGTA
8574473 ATAGCTAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
16 33 0.67
17 16 0.33
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:8574450 original size:33 final size:32
Alignment explanation
Indices: 8574404--8574472 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
8574394 TTTGGTTCGC
*
8574404 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAAG
*
8574436 TGTATTGGGATTAGAGGTGTATTGGATTAGAAG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAAG
8574469 TGTA
1 TGTA
8574473 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAAG
Found at i:8574729 original size:18 final size:17
Alignment explanation
Indices: 8574708--8574742 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8574698 TTATTATTAA
*
8574708 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8574726 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8574743 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8574931 original size:121 final size:120
Alignment explanation
Indices: 8574691--8575074 Score: 716
Period size: 120 Copynumber: 3.2 Consensus size: 120
8574681 ATCATATTTA
8574691 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
8574756 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
8574811 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
8574875 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
8574932 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
8574997 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
8575052 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
8575075 AACTTGAAAA
Statistics
Matches: 256, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
119 1 0.00
120 138 0.54
121 116 0.45
122 1 0.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:8574970 original size:18 final size:17
Alignment explanation
Indices: 8574949--8574983 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8574939 TTATTATTAA
*
8574949 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8574967 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8574984 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8578135 original size:33 final size:33
Alignment explanation
Indices: 8578096--8578204 Score: 134
Period size: 33 Copynumber: 3.3 Consensus size: 33
8578086 ATTATAAAGC
*
8578096 ATGTATAAATGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
8578129 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
8578162 AATGT-T-ATTGTCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTGACCTAAAATTA-ATTGTTGGTGT
8578194 ATGTATAATTG
1 ATGTATAATTG
8578205 TTGGTTTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
31 5 0.08
32 21 0.32
33 35 0.54
34 4 0.06
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:8578247 original size:51 final size:49
Alignment explanation
Indices: 8578152--8578253 Score: 170
Period size: 50 Copynumber: 2.0 Consensus size: 49
8578142 CTAAAATTAC
8578152 TTGTTGGTTTAATGTTATTGTCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTGTCCTAAAAAACATTGTTGGTGTATG-ATAA
8578202 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATGATAA
1 TTGTTGGTTTAATGTTATTGT--CCTAAAAAACATTGTTGGTGTATGATAA
8578252 TT
1 TT
8578254 TTTACGTATA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
49 1 0.02
50 25 0.50
51 24 0.48
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (49 bp):
TTGTTGGTTTAATGTTATTGTCCTAAAAAACATTGTTGGTGTATGATAA
Found at i:8578425 original size:85 final size:86
Alignment explanation
Indices: 8578320--8578499 Score: 346
Period size: 86 Copynumber: 2.1 Consensus size: 86
8578310 TTCTCTCCAC
8578320 ATAA-AATTATATCAACATTAATACTTAACAAACA-GTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
8578383 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
8578404 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
8578469 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
8578490 ATAATAATTA
1 ATAATAATTA
8578500 CAATTATATT
Statistics
Matches: 94, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
84 4 0.04
85 30 0.32
86 60 0.64
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.41
Consensus pattern (86 bp):
ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
TTAATATTAAAGATAAAAATT
Found at i:8587974 original size:6 final size:6
Alignment explanation
Indices: 8587963--8587999 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
8587953 AAATCGTTTC
* *
8587963 TCATTT TCATTT TCATTT TCATTT CCATTT CCATTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
8588000 GAGAAAACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (6 bp):
TCATTT
Found at i:8594152 original size:29 final size:30
Alignment explanation
Indices: 8594080--8594153 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
8594070 TTAAGGTGTT
* * * *
8594080 TCAGGCACTATGTGCCGGTGGTTATAGTTA
1 TCAGGCACTATGTACAGGTGGTTACAATTA
* * *
8594110 CCAGGTACTTTGTACAGGT-GTTACAATTA
1 TCAGGCACTATGTACAGGTGGTTACAATTA
8594139 TCAGGCACTATGTAC
1 TCAGGCACTATGTAC
8594154 TAGTGGTGGA
Statistics
Matches: 34, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
29 20 0.59
30 14 0.41
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (30 bp):
TCAGGCACTATGTACAGGTGGTTACAATTA
Found at i:8597562 original size:24 final size:24
Alignment explanation
Indices: 8597535--8597580 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
8597525 CCTATAACAG
*
8597535 GTAGCTCTAAAGAGCAATTAATGT
1 GTAGCTCCAAAGAGCAATTAATGT
*
8597559 GTAGCTCCGAAGAGCAATTAAT
1 GTAGCTCCAAAGAGCAATTAAT
8597581 CAGGAAGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (24 bp):
GTAGCTCCAAAGAGCAATTAATGT
Found at i:8600697 original size:64 final size:64
Alignment explanation
Indices: 8600570--8600698 Score: 143
Period size: 64 Copynumber: 2.0 Consensus size: 64
8600560 CAAGCATCTC
* * * * * * * ***
8600570 GATCGGTATTGATCTTGCATGTGTTGCGGACATGCCGCAACTTTTTGTGAGCATCCTGTTATAT
1 GATCGGTATTGATCCTACATATATTACGGACATACCGCAACTTTTTATGAGCATCCCAATATAT
*
8600634 GATCGGTATTGATCCTACATATATTACGGACATACCG-AAGCTTTTTATGAGCGTCCCAATATAT
1 GATCGGTATTGATCCTACATATATTACGGACATACCGCAA-CTTTTTATGAGCATCCCAATATAT
8600698 G
1 G
8600699 GCTCTTCATG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
63 2 0.04
64 51 0.96
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (64 bp):
GATCGGTATTGATCCTACATATATTACGGACATACCGCAACTTTTTATGAGCATCCCAATATAT
Found at i:8605362 original size:15 final size:15
Alignment explanation
Indices: 8605342--8605370 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8605332 GTGAGATATG
8605342 AGAACTTTGAAAAAT
1 AGAACTTTGAAAAAT
8605357 AGAACTTTGAAAAA
1 AGAACTTTGAAAAA
8605371 AACCATGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.14, T:0.24
Consensus pattern (15 bp):
AGAACTTTGAAAAAT
Found at i:8608630 original size:5 final size:5
Alignment explanation
Indices: 8608620--8608658 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
8608610 AATTGTCATC
8608620 AATTA AATTA AATTA AATTA AATTA AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATTA AATTA AATT
8608659 GAATAGGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATTA
Found at i:8609264 original size:24 final size:24
Alignment explanation
Indices: 8609218--8609265 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
8609208 TTCCCAATAT
*
8609218 ATGGCTATTCGGAGCTTCCCGTTA
1 ATGGCTATTCGGAGCTACCCGTTA
* *
8609242 ATGGCTCTTCGGAGCTACTCGTTA
1 ATGGCTATTCGGAGCTACCCGTTA
8609266 TAAGCTCGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33
Consensus pattern (24 bp):
ATGGCTATTCGGAGCTACCCGTTA
Found at i:8610893 original size:21 final size:21
Alignment explanation
Indices: 8610867--8610928 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
8610857 ATTGGGTGGA
8610867 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* *
8610888 TCAGCTCTTATGAGCTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
*
8610909 TCAGCT-TT-CAAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
8610928 T
1 T
8610929 TGCGTATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
19 9 0.25
20 2 0.06
21 25 0.69
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:8632080 original size:20 final size:21
Alignment explanation
Indices: 8632052--8632091 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
8632042 GTAATTTGTC
*
8632052 AAATAAAAGATAAATTAGTTA
1 AAATAAAAGACAAATTAGTTA
8632073 AAAT-AAAGACAAATTAGTT
1 AAATAAAAGACAAATTAGTT
8632092 GTCATTTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.28
Consensus pattern (21 bp):
AAATAAAAGACAAATTAGTTA
Found at i:8633066 original size:43 final size:44
Alignment explanation
Indices: 8632961--8633066 Score: 105
Period size: 44 Copynumber: 2.4 Consensus size: 44
8632951 TGTGTTATTG
* * *
8632961 TGTAAGACCACGTCTAGGACGTTGGCAGCGACTTGTGATTTACG
1 TGTAAGACCACGTCTGGGAAGTTGGCAGCGACTTGTGATTTACA
*
8633005 TGTAAGACC-CTGTTTGGGATAG-TGGCA-CTGA-TATGTGA-TTACA
1 TGTAAGACCAC-GTCTGGGA-AGTTGGCAGC-GACT-TGTGATTTACA
8633048 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
8633067 CGATGGCGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
43 23 0.44
44 28 0.54
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGAAGTTGGCAGCGACTTGTGATTTACA
Found at i:8648180 original size:24 final size:24
Alignment explanation
Indices: 8648153--8648205 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
8648143 TGACATAACA
*
8648153 TGTCATGTTAATTTTCCATTTCAC
1 TGTCATGTTAATTTTCCACTTCAC
8648177 TGTCATGTTAATTTTCCACTTCAC
1 TGTCATGTTAATTTTCCACTTCAC
8648201 TGTCA
1 TGTCA
8648206 ATGGCTAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (24 bp):
TGTCATGTTAATTTTCCACTTCAC
Found at i:8654786 original size:31 final size:33
Alignment explanation
Indices: 8654751--8654821 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
8654741 TACCCCCCTA
* *
8654751 AACTTGTTCAAAAGTAT-C-TAGTTGGTACTTG
1 AACTTGTTCAAAAGAATACATAGTTAGTACTTG
* * *
8654782 AACTTTTTCGAAAGAATACATTGTTAGTACTTG
1 AACTTGTTCAAAAGAATACATAGTTAGTACTTG
8654815 AACTTGT
1 AACTTGT
8654822 CCAGAAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 14 0.44
32 1 0.03
33 17 0.53
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (33 bp):
AACTTGTTCAAAAGAATACATAGTTAGTACTTG
Found at i:8654860 original size:21 final size:22
Alignment explanation
Indices: 8654831--8654874 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8654821 TCCAGAAAAT
8654831 TATACTTTTT-AAATTAATTTA
1 TATACTTTTTAAAATTAATTTA
*
8654852 TATATTTTTTAAAATTAATTTA
1 TATACTTTTTAAAATTAATTTA
8654874 T
1 T
8654875 GTCTGACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TATACTTTTTAAAATTAATTTA
Found at i:8657649 original size:43 final size:43
Alignment explanation
Indices: 8657546--8657703 Score: 212
Period size: 42 Copynumber: 3.7 Consensus size: 43
8657536 CAAATAAAAG
** * *
8657546 CGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGGACA-AAA
1 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTAGAAAAGAAA
*
8657588 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAGAAA
1 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTAGAAAAGAAA
*
8657631 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTT-TAAAAGAAA
1 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTAGAAAAGAAA
* * *
8657673 TGCCGCTAAAGACAATGCTCTTTTAGCGGCG
1 CGCCGCTAAAGAAAATGTTC-TTTAGCGGCG
8657704 TTTATTCTTA
Statistics
Matches: 106, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
42 61 0.58
43 45 0.42
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTAGAAAAGAAA
Found at i:8657695 original size:85 final size:85
Alignment explanation
Indices: 8657546--8657703 Score: 214
Period size: 85 Copynumber: 1.8 Consensus size: 85
8657536 CAAATAAAAG
** * *
8657546 CGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGGACAAAACGCCGCTAAAGAACATGTTC-TT
1 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTA-GAAAAAACGCCGCTAAAGAACATGCTCTTT
8657610 TAGCGGCGCTTAGAAAAGAAA
65 TAGCGGCGCTTAGAAAAGAAA
*
8657631 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTTA-AAAGAAATGCCGCTAAAG-ACAATGCTCT
1 CGCCGCTAAAGAAAATGTTCTTTAGCGGCGC-TTAGAAA-AAACGCCGCTAAAGAAC-ATGCTCT
8657694 TTTAGCGGCG
63 TTTAGCGGCG
8657704 TTTATTCTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
84 4 0.06
85 47 0.73
86 13 0.20
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (85 bp):
CGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTAGAAAAAACGCCGCTAAAGAACATGCTCTTTT
AGCGGCGCTTAGAAAAGAAA
Found at i:8657720 original size:85 final size:82
Alignment explanation
Indices: 8657543--8657740 Score: 197
Period size: 85 Copynumber: 2.4 Consensus size: 82
8657533 TTTCAAATAA
* *
8657543 AAGCGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGGACAAAACGCCGCTAAAGAACATGTTC
1 AAGCGCCGCTAAAGA--ATGTTCTTTAGCGGCGCTTA-GAAAAAACGCCGCTAAAGAACATGCTC
8657608 TTTAGCGGCGCTTAGAAAAG
63 TTTAGCGGCGCTTAGAAAAG
* *
8657628 AAACGCCGCTAAAGAAAATGTTCTTTAGCGGCGCTTTA-AAAGAAATGCCGCTAAAG-ACAATGC
1 AAGCGCCGCTAAAG--AATGTTCTTTAGCGGCGC-TTAGAAA-AAACGCCGCTAAAGAAC-ATGC
* *****
8657691 TCTTTTAGCGGCGTTTA-TTCTT
61 TC-TTTAGCGGCGCTTAGAAAAG
8657713 AAGCGCCGCTAAAG-ATGTTCTTTAGCGG
1 AAGCGCCGCTAAAGAATGTTCTTTAGCGG
8657741 TGTTTTTGTA
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
82 14 0.15
84 4 0.04
85 61 0.64
86 16 0.17
87 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (82 bp):
AAGCGCCGCTAAAGAATGTTCTTTAGCGGCGCTTAGAAAAAACGCCGCTAAAGAACATGCTCTTT
AGCGGCGCTTAGAAAAG
Found at i:8658093 original size:21 final size:21
Alignment explanation
Indices: 8658067--8658121 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
8658057 GGCCTGCTCG
*
8658067 GCTTCTCTTGCTGCAGCTTCT
1 GCTTCTCTCGCTGCAGCTTCT
8658088 GCTTCTCTCGCTGCAGCTTCT
1 GCTTCTCTCGCTGCAGCTTCT
*
8658109 GCTTCTCGCGCTG
1 GCTTCTCTCGCTG
8658122 TCGCCTCTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.04, C:0.36, G:0.22, T:0.38
Consensus pattern (21 bp):
GCTTCTCTCGCTGCAGCTTCT
Found at i:8658130 original size:21 final size:21
Alignment explanation
Indices: 8658067--8658133 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
8658057 GGCCTGCTCG
** *
8658067 GCTTCTCTTGCTGCAGCTTCT
1 GCTTCTCGCGCTGCAGCCTCT
* *
8658088 GCTTCTCTCGCTGCAGCTTCT
1 GCTTCTCGCGCTGCAGCCTCT
8658109 GCTTCTCGCGCTGTC-GCCTCT
1 GCTTCTCGCGCTG-CAGCCTCT
8658130 GCTT
1 GCTT
8658134 TAAGTTGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
21 41 0.98
22 1 0.02
ACGTcount: A:0.03, C:0.37, G:0.21, T:0.39
Consensus pattern (21 bp):
GCTTCTCGCGCTGCAGCCTCT
Found at i:8663690 original size:9 final size:9
Alignment explanation
Indices: 8663678--8663885 Score: 130
Period size: 9 Copynumber: 23.8 Consensus size: 9
8663668 TGTACATGTA
8663678 TAAGTTATG
1 TAAGTTATG
8663687 TAAGTTATG
1 TAAGTTATG
*
8663696 T-A-TTAAG
1 TAAGTTATG
* *
8663703 TAAGCTATT
1 TAAGTTATG
*
8663712 TAAGTTGTG
1 TAAGTTATG
8663721 T-AG-TATG
1 TAAGTTATG
8663728 TAAGTTATG
1 TAAGTTATG
* *
8663737 TAAGTTTTC
1 TAAGTTATG
* *
8663746 AAAGTAATG
1 TAAGTTATG
*
8663755 TATGTTATG
1 TAAGTTATG
8663764 TAAG-T-TG
1 TAAGTTATG
8663771 TAAGTTAT-
1 TAAGTTATG
*
8663779 TATGTATTATG
1 TAAG--TTATG
*
8663790 TAGGTTATG
1 TAAGTTATG
8663799 TAAGTTATG
1 TAAGTTATG
*
8663808 TAAGTTTTG
1 TAAGTTATG
*
8663817 T-A-TTATT
1 TAAGTTATG
*
8663824 TAAGTTGTG
1 TAAGTTATG
8663833 TAAGTTATG
1 TAAGTTATG
* * *
8663842 GATGCTATG
1 TAAGTTATG
*
8663851 TAAGTAATG
1 TAAGTTATG
*
8663860 TGTA-TTATG
1 T-AAGTTATG
*
8663869 TAAGCTTATA
1 TAAG-TTATG
8663879 TAAGTTA
1 TAAGTTA
8663886 ATATGTAACT
Statistics
Matches: 147, Mismatches: 38, Indels: 28
0.69 0.18 0.13
Matches are distributed among these distances:
7 19 0.13
8 14 0.10
9 98 0.67
10 13 0.09
11 3 0.02
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:8663715 original size:25 final size:25
Alignment explanation
Indices: 8663678--8663841 Score: 92
Period size: 25 Copynumber: 6.7 Consensus size: 25
8663668 TGTACATGTA
*
8663678 TAAGTTATGTAAGTTATGTATTAAG
1 TAAGTTATGTAAGTTATGTAGTAAG
* * * *
8663703 TAAGCTATTTAAGTTGTGTAGTATG
1 TAAGTTATGTAAGTTATGTAGTAAG
* **
8663728 TAAGTTATGTAAGTTTTCAAAGTAATG
1 TAAGTTATGTAAGTTAT-GTAGTAA-G
*
8663755 TATGTTATGTAAG---T-T-GTAAG
1 TAAGTTATGTAAGTTATGTAGTAAG
* *
8663775 TTA-TTATGT-A-TTATGTAGGTTATG
1 TAAGTTATGTAAGTTATGTA-G-TAAG
* * **
8663799 TAAGTTATGTAAGTTTTGTATTATT
1 TAAGTTATGTAAGTTATGTAGTAAG
*
8663824 TAAGTTGTGTAAGTTATG
1 TAAGTTATGTAAGTTATG
8663842 GATGCTATGT
Statistics
Matches: 105, Mismatches: 22, Indels: 24
0.70 0.15 0.16
Matches are distributed among these distances:
18 1 0.01
19 6 0.06
20 3 0.03
21 5 0.05
23 1 0.01
24 6 0.06
25 59 0.56
26 5 0.05
27 19 0.18
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.47
Consensus pattern (25 bp):
TAAGTTATGTAAGTTATGTAGTAAG
Found at i:8663827 original size:16 final size:16
Alignment explanation
Indices: 8663781--8663834 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
8663771 TAAGTTATTA
* *
8663781 TGTATTATGTAGGTTA
1 TGTATTATGTAAGTTG
*
8663797 TGTAAGTTATGTAAGTTT
1 TGT-A-TTATGTAAGTTG
*
8663815 TGTATTATTTAAGTTG
1 TGTATTATGTAAGTTG
8663831 TGTA
1 TGTA
8663835 AGTTATGGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 17 0.53
17 2 0.06
18 13 0.41
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (16 bp):
TGTATTATGTAAGTTG
Found at i:8663968 original size:16 final size:16
Alignment explanation
Indices: 8663926--8663968 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
8663916 TTTGAGAATT
* *
8663926 TTATATAAGTCATGTA
1 TTATGTAAGTTATGTA
8663942 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
8663958 TTATGTAAGTT
1 TTATGTAAGTT
8663969 TAATAAGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:8664217 original size:75 final size:76
Alignment explanation
Indices: 8664056--8664284 Score: 412
Period size: 75 Copynumber: 3.1 Consensus size: 76
8664046 GTAAGTAATG
*
8664056 TAAGTCATGTAAAATGTACTTAATAATATATATTTAAGTAATGTAAGATATCAATTTTAAAATA-
1 TAAGTCATGTAAAATATACTTAATAATATATATTTAAGTAATGTAAGATATCAATTTTAAAATAT
8664120 ATA-T-ATTAA
66 ATATTCATTAA
8664129 TAAGTCATGTAAAATATACTTAATAATATATATTTAAGT-ATGTAAGATATCAATTTTAAAATAT
1 TAAGTCATGTAAAATATACTTAATAATATATATTTAAGTAATGTAAGATATCAATTTTAAAATAT
8664193 ATATTCATTAA
66 ATATTCATTAA
*
8664204 TAAGTCGTGTAAAATATACTTAATAATATATATTTAAGTAATGTAAGATATCAATTTTAAAATAT
1 TAAGTCATGTAAAATATACTTAATAATATATATTTAAGTAATGTAAGATATCAATTTTAAAATAT
8664269 ATATTCATTAA
66 ATATTCATTAA
8664280 TAAGT
1 TAAGT
8664285 TAAATGAAAT
Statistics
Matches: 150, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
72 24 0.16
73 41 0.27
74 1 0.01
75 43 0.29
76 41 0.27
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.41
Consensus pattern (76 bp):
TAAGTCATGTAAAATATACTTAATAATATATATTTAAGTAATGTAAGATATCAATTTTAAAATAT
ATATTCATTAA
Found at i:8664561 original size:16 final size:16
Alignment explanation
Indices: 8664540--8664575 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8664530 ATTAATTGAA
*
8664540 ATAAAATTGTAAATCG
1 ATAAAATTGCAAATCG
8664556 ATAAAATTGCAAATCG
1 ATAAAATTGCAAATCG
8664572 ATAA
1 ATAA
8664576 TTATAAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.28
Consensus pattern (16 bp):
ATAAAATTGCAAATCG
Found at i:8664930 original size:6 final size:6
Alignment explanation
Indices: 8664915--8664943 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
8664905 TAAATACTGG
8664915 GAAAAA -AAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
8664944 CATATGCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:8667205 original size:7 final size:7
Alignment explanation
Indices: 8667195--8667267 Score: 56
Period size: 7 Copynumber: 10.3 Consensus size: 7
8667185 ACCTCAAAAA
8667195 CCAAACC
1 CCAAACC
*
8667202 CCAAATC
1 CCAAACC
8667209 CCAAACC
1 CCAAACC
* *
8667216 CTAATCC
1 CCAAACC
* *
8667223 CTAAACT
1 CCAAACC
**
8667230 ATAAACC
1 CCAAACC
*
8667237 CCAAATC
1 CCAAACC
8667244 CCAAACC
1 CCAAACC
*
8667251 CTAAACC
1 CCAAACC
8667258 CCAAAACC
1 CC-AAACC
8667266 CC
1 CC
8667268 GAGCAGTAAA
Statistics
Matches: 51, Mismatches: 14, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
7 44 0.86
8 7 0.14
ACGTcount: A:0.42, C:0.47, G:0.00, T:0.11
Consensus pattern (7 bp):
CCAAACC
Found at i:8667249 original size:21 final size:22
Alignment explanation
Indices: 8667218--8667262 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
8667208 CCCAAACCCT
*
8667218 AATCCCTAAACTATAAACCCCA
1 AATCCCTAAACCATAAACCCCA
*
8667240 AATCCC-AAACCCTAAACCCCA
1 AATCCCTAAACCATAAACCCCA
8667261 AA
1 AA
8667263 ACCCCGAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (22 bp):
AATCCCTAAACCATAAACCCCA
Found at i:8668127 original size:10 final size:11
Alignment explanation
Indices: 8668097--8668126 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
8668087 ATCAGTCATG
8668097 TATTTTAAAAT
1 TATTTTAAAAT
8668108 T-TTTTAAAAT
1 TATTTTAAAAT
8668118 TATTTTAAA
1 TATTTTAAA
8668127 TAATACTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TATTTTAAAAT
Found at i:8668531 original size:114 final size:114
Alignment explanation
Indices: 8668341--8668762 Score: 763
Period size: 114 Copynumber: 3.7 Consensus size: 114
8668331 CCGCTAATAC
* *
8668341 TATACTTCAGCGGCGTTTTTAACCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
1 TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
* *
8668406 CGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAATGCCGCTGATGA
66 CGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAACGCCGTTGATGA
8668455 TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
1 TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
* *
8668520 CGTTTTGGTTAAGATGATTTGCGGCGCATCAGACAAACGCCATTGATGA
66 CGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAACGCCGTTGATGA
8668569 TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
1 TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
*
8668634 CGTTTTGGTTAAGATGATTTGCGGCCCATCCGACAAACGCCGTTGATGA
66 CGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAACGCCGTTGATGA
*
8668683 TATACTTTAGCGGCGTTTTTTATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
1 TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
*
8668748 TGTTTTGGTTAAGAT
66 CGTTTTGGTTAAGAT
8668763 ATCTGGAGGC
Statistics
Matches: 297, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 297 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (114 bp):
TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGACCAAAACTCTG
CGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAACGCCGTTGATGA
Found at i:8669027 original size:114 final size:114
Alignment explanation
Indices: 8668331--8669045 Score: 704
Period size: 114 Copynumber: 6.3 Consensus size: 114
8668321 CGTAAAAGCC
* *
8668331 CCGCTAAT-ACTATACTTCAGCGGCGTTTTTAACCAAGCGCCACTAATTCTAATACTCCTAAAGA
1 CCGCTAATGACTATACTTTAGCGGCGTTTTTAA-TAAGCGCCACTAATTCTAATACTCCTAAAGA
* *
8668395 CCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAATG
65 CCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCCCACAAACG
*
8668445 CCGCTGATGA-TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGA
1 CCGCTAATGACTATACTTTAGCGGCGTTTTTAAT-AAGCGCCACTAATTCTAATACTCCTAAAGA
**
8668509 CCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCAGACAAACG
65 CCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCCCACAAACG
** *
8668559 CCATTGATGA-TATACTTTAGCGGCGTTTTTAATCAAGCGCCACTAATTCTAATACTCCTAAAGA
1 CCGCTAATGACTATACTTTAGCGGCGTTTTTAAT-AAGCGCCACTAATTCTAATACTCCTAAAGA
* *
8668623 CCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCCCATCCGACAAACG
65 CCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCCCACAAACG
* * *
8668673 CCGTTGATGA-TATACTTTAGCGGCGTTTTTTATCAAGCGCCACTAATTCTAATACTCCTAAAGA
1 CCGCTAATGACTATACTTTAGCGGCGTTTTTAAT-AAGCGCCACTAATTCTAATACTCCTAAAGA
* * * * *
8668737 CCAAAACTCTGTGTTTTGGTTAAGAT-ATCTGGAGGCGCTTCCCACCAAACA
65 CCAAAACTCTGCGTTTTGGTTAAGATGAT-TTGCGGCGCATCCCA-CAAACG
* * * *** * * * * *
8668788 CTGCT-ATAACTATCCTTTA-CTGGCGTTTTCCTTAAACGCCACTAATTATAGTA-TACATCAAG
1 CCGCTAATGACTATACTTTAGC-GGCGTTTTTAATAAGCGCCACTAATTCTAATACT-CCTAAAG
*** * * ** **** **
8668850 ACCAAAACGGAGCGTTTTGATTAGGAT-ATCTTGCGGCGTTTAATGCTATGCG
64 ACCAAAACTCTGCGTTTTGGTTAAGATGAT-TTGCGGCGCATCCCAC-AAACG
* * * *
8668902 CCGCTAAT-ACTATACATTAGCGGCGTTTTATTTATAAGCGCCACTAATTGC-AATA-TACATCA
1 CCGCTAATGACTATACTTTAGCGGCG-TTT-TTAATAAGCGCCACTAATT-CTAATACT-CCTAA
* * * *
8668964 AGACC-AAACTCTGCGTTTTGGTTAACATCG-TTTGCGGCGCTTCCCATAAGCG
62 AGACCAAAACTCTGCGTTTTGGTTAAGAT-GATTTGCGGCGCATCCCACAAACG
* *
8669016 CCGCTAAT-ACTATACATTACCGGCGTTTTT
1 CCGCTAATGACTATACTTTAGCGGCGTTTTT
8669046 TCGTAAGCGC
Statistics
Matches: 517, Mismatches: 69, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
112 2 0.00
113 7 0.01
114 418 0.81
115 59 0.11
116 31 0.06
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (114 bp):
CCGCTAATGACTATACTTTAGCGGCGTTTTTAATAAGCGCCACTAATTCTAATACTCCTAAAGAC
CAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCCCACAAACG
Found at i:8669179 original size:115 final size:112
Alignment explanation
Indices: 8668331--8669179 Score: 295
Period size: 114 Copynumber: 7.4 Consensus size: 112
8668321 CGTAAAAGCC
* * * * * *
8668331 CCGCTAATACTATAC-TTCAGCGGCGTTTT-TAACCAAGCGCCACTAATTCTAATACT-CCTAAA
1 CCGCTAATACTATACATT-AGCGGCGTTTTATTA-GAAGCGCCACTAATGCCAATA-TACATCAA
* * * * * * * *
8668393 GACCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCCGACAAATG
63 GACC-AAACGCTGCGTGTTGGTTAACAT-CTTTGCGGCGCTTCCCATAAACG
* * * * * * * *
8668445 CCGCTGATGA-TATACTTTAGCGGCGTTTT-TAATCAAGCGCCACTAATTCTAATACT-CCTAAA
1 CCGCTAAT-ACTATACATTAGCGGCGTTTTATTA-GAAGCGCCACTAATGCCAATA-TACATCAA
* * * * * ** *
8668507 GACCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCGCATCAGACAAACG
63 GACC-AAACGCTGCGTGTTGGTTAACAT-CTTTGCGGCGCTTCCCATAAACG
** * * * * * * * *
8668559 CCATTGATGA-TATACTTTAGCGGCGTTTT-TAATCAAGCGCCACTAATTCTAATACT-CCTAAA
1 CCGCTAAT-ACTATACATTAGCGGCGTTTTATTA-GAAGCGCCACTAATGCCAATA-TACATCAA
* * * * * * * *
8668621 GACCAAAACTCTGCGTTTTGGTTAAGATGATTTGCGGCCCATCCGACAAACG
63 GACC-AAACGCTGCGTGTTGGTTAACAT-CTTTGCGGCGCTTCCCATAAACG
* * * * * * * *
8668673 CCGTTGATGA-TATACTTTAGCGGCGTTTT-TTATCAAGCGCCACTAATTCTAATACT-CCTAAA
1 CCGCTAAT-ACTATACATTAGCGGCGTTTTATTA-GAAGCGCCACTAATGCCAATA-TACATCAA
* * * * * * * * *
8668735 GACCAAAACTCTGTGTTTTGGTTAAGATATCTGGAGGCGCTTCCCACCAAACA
63 GACC-AAACGCTGCGTGTTGGTTAACATCT-TTGCGGCGCTTCCCA-TAAACG
* * * * *** *
8668788 CTGCT-ATAACTATCCTTTA-CTGGCGTTTTCCTTA-AA-CGCCACTAATTATAGTATACATCAA
1 CCGCTAAT-ACTATACATTAGC-GGCGTTTT-ATTAGAAGCGCCACTAATGCCAATATACATCAA
** * * * * ** **
8668849 GACCAAAACGGAGCGTTTTGATTAGGATATC-TTGCGGCGTTTAATGC-TATGCG
63 GACC-AAACGCTGCGTGTTGGTTA--ACATCTTTGCGGCGCTT--CCCATAAACG
*
8668902 CCGCTAATACTATACATTAGCGGCGTTTTATTTATAAGCGCCACTAATTG-CAATATACATCAAG
1 CCGCTAATACTATACATTAGCGGCGTTTTA-TTAGAAGCGCCACTAA-TGCCAATATACATCAAG
* * *
8668966 ACCAAACTCTGCGTTTTGGTTAACATCGTTTGCGGCGCTTCCCATAAGCG
64 ACCAAACGCTGCGTGTTGGTTAACATC-TTTGCGGCGCTTCCCATAAACG
* * *
8669016 CCGCTAATACTATACATTACCGGCGTTTT-TTCGTAAGCGCCACAAATGCCAATATACATCAAGA
1 CCGCTAATACTATACATTAGCGGCGTTTTATTAG-AAGCGCCACTAATGCCAATATACATCAAGA
* * ****
8669080 CCAGAACGCTGCGTGTTGGTCTTGATAT-TTTGCGGCGCTGTGTGGTAAACG
65 CCA-AACGCTGCGTGTTGG--TTAACATCTTTGCGGCGCT-TCCCATAAACG
* * *
8669131 CCGCTAATGA-TATTC-TATAGCGGCGTTTTATTAGAATCGCCGCTAATGC
1 CCGCTAAT-ACTATACAT-TAGCGGCGTTTTATTAGAAGCGCCACTAATGC
8669180 TAGATCTTTA
Statistics
Matches: 628, Mismatches: 76, Indels: 61
0.82 0.10 0.08
Matches are distributed among these distances:
112 4 0.01
113 37 0.06
114 446 0.71
115 100 0.16
116 37 0.06
117 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (112 bp):
CCGCTAATACTATACATTAGCGGCGTTTTATTAGAAGCGCCACTAATGCCAATATACATCAAGAC
CAAACGCTGCGTGTTGGTTAACATCTTTGCGGCGCTTCCCATAAACG
Found at i:8669475 original size:30 final size:27
Alignment explanation
Indices: 8669441--8669504 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 27
8669431 CTTCTGGGAT
*
8669441 AATGTCATATTTGGCATCTATATTTTTATA
1 AATGTCA-ATGTGGCATCTATA-TTTTA-A
*
8669471 AATGTTCAATGTGGTATCTATATTTTAA
1 AATG-TCAATGTGGCATCTATATTTTAA
8669499 AATGTC
1 AATGTC
8669505 TGATGTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 2 0.06
28 5 0.16
29 5 0.16
30 16 0.52
31 3 0.10
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (27 bp):
AATGTCAATGTGGCATCTATATTTTAA
Found at i:8670194 original size:41 final size:42
Alignment explanation
Indices: 8670137--8670218 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 42
8670127 TATTGCACAT
**
8670137 GTAAAAAGGTTAGTATAT-ATTATATTACAAAGTCTAAAATG
1 GTAAAAAAATTAGTATATAATTATATTACAAAGTCTAAAATG
* *
8670178 GTAAAAAAATTAGTATATACATTATATTATAAGGTCTAAAA
1 GTAAAAAAATTAGTATATA-ATTATATTACAAAGTCTAAAA
8670219 CAAAAGTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 16 0.46
43 19 0.54
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (42 bp):
GTAAAAAAATTAGTATATAATTATATTACAAAGTCTAAAATG
Found at i:8672038 original size:31 final size:29
Alignment explanation
Indices: 8672000--8672077 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
8671990 CTAACGGCTC
* *
8672000 AGTGACTAAAATGTTACAACGTGATAACATA
1 AGTGACTAAAATGTAAC-ACGTCA-AACATA
* **
8672031 AGTGACTAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACACGTCAAACATA
8672060 AGTGACTAAAATGTAACA
1 AGTGACTAAAATGTAACA
8672078 TGAGCCAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 23 0.56
30 3 0.07
31 15 0.37
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AGTGACTAAAATGTAACACGTCAAACATA
Found at i:8672094 original size:31 final size:29
Alignment explanation
Indices: 8672025--8672098 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
8672015 ACAACGTGAT
**
8672025 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGCCA
*
8672054 AACATAAGTGACTAAAATGTAACATGAGCCA
1 AACATAAGTGACTAAAACGTAACAT--GCCA
*
8672085 AACAAAAGTGACTA
1 AACATAAGTGACTA
8672099 TTTTAGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGCCA
Found at i:8672658 original size:76 final size:74
Alignment explanation
Indices: 8672570--8672762 Score: 246
Period size: 75 Copynumber: 2.6 Consensus size: 74
8672560 CATGGGCATA
* * *
8672570 AAAAAAATCTTAATTTTAAAAAAAATTAAACTCTTATTTTTTATTCAATTTTGTATTTAAATTTT
1 AAAAAATTCTTAATTTTAAAAAAAATTAAACTCTTATTTTTTATT-AATTTTATATTTAAA-ATT
8672635 TATAATGTATT
64 TATAATGTATT
* *
8672646 AAAAAATTCTTAA-ATTAAAACAAAATTAAACTCTTATTTTCTATTAATTTTATATTTAAAATTT
1 AAAAAATTCTTAATTTTAAAA-AAAATTAAACTCTTATTTTTTATTAATTTTATATTTAAAATTT
8672710 ATAATGTATT
65 ATAATGTATT
* ** *
8672720 -AAAAATTATTGAATTAAAAAAAACAATTAAACTCTTACTTTTT
1 AAAAAATTCTT-AATTTTAAAAAA-AATTAAACTCTTATTTTTT
8672763 CTTTTTACAC
Statistics
Matches: 102, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
73 9 0.09
74 17 0.17
75 41 0.40
76 35 0.34
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (74 bp):
AAAAAATTCTTAATTTTAAAAAAAATTAAACTCTTATTTTTTATTAATTTTATATTTAAAATTTA
TAATGTATT
Found at i:8678449 original size:31 final size:29
Alignment explanation
Indices: 8678380--8678453 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
8678370 ACCTTAGGTT
* * *
8678380 ACATTTTAGTTACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* *
8678409 ATATTTTAGTCACTTATGTTATCATATTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
8678440 ACATTTTAGTCACT
1 ACATTTTAGTCACT
8678454 AAGTCGTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 18 0.49
30 2 0.05
31 17 0.46
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:8679127 original size:31 final size:31
Alignment explanation
Indices: 8679089--8679154 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
8679079 TTACCCTCAA
8679089 CTTTACCCAAACCACTTTGGTTCCATGTTCC
1 CTTTACCCAAACCACTTTGGTTCCATGTTCC
8679120 CTTTACCCAAACCACTTTGGTTCCATGTTCC
1 CTTTACCCAAACCACTTTGGTTCCATGTTCC
8679151 CTTT
1 CTTT
8679155 CTCTCTTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.18, C:0.35, G:0.09, T:0.38
Consensus pattern (31 bp):
CTTTACCCAAACCACTTTGGTTCCATGTTCC
Found at i:8680743 original size:26 final size:26
Alignment explanation
Indices: 8680714--8680769 Score: 96
Period size: 25 Copynumber: 2.2 Consensus size: 26
8680704 TTTCTTGGAA
*
8680714 TAAGGTTCATCTCCTTAATTCCCAAT
1 TAAGGTTCATCTCCCTAATTCCCAAT
8680740 TAA-GTTCATCTCCCTAATTCCCAAT
1 TAAGGTTCATCTCCCTAATTCCCAAT
8680765 TAAGG
1 TAAGG
8680770 AAGGATGCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.36
Consensus pattern (26 bp):
TAAGGTTCATCTCCCTAATTCCCAAT
Found at i:8684717 original size:17 final size:17
Alignment explanation
Indices: 8684695--8684732 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
8684685 ATCATTGACT
8684695 TCTAATAGGATGAATTA
1 TCTAATAGGATGAATTA
8684712 TCTAATAGGATGAATTA
1 TCTAATAGGATGAATTA
8684729 TCTA
1 TCTA
8684733 CTATGAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (17 bp):
TCTAATAGGATGAATTA
Found at i:8689293 original size:126 final size:125
Alignment explanation
Indices: 8688904--8689472 Score: 685
Period size: 126 Copynumber: 4.5 Consensus size: 125
8688894 GATAAAATCA
* * * * * * * *
8688904 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCCCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGCATGCTTTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
8688969 AGGTCCT-AGAAAAATAATTTCGACTTGACGTTTCTGAGTAAATAGTTTAAAAAACGCTTT
66 AGGTCCTGA-AAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* ** *
8689029 AAGCAGCATGCTTTATGAGAAGAATTTGTGAAATCGCGCCTTCGTGGACGCGCTTTTGTTACAGT
1 AAGCAGCATGCTTTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
8689094 TGGTCCTGGAAGAAATAATTTTGAGTTGACATTTTTGAGCAAATAGTTTAGAAAAACGCTTC
66 AGGTCCT-GAAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATA-AAAAACGCTTC
* * * * * *
8689156 AAGCAGGATGCTTTATAAGAAAAATTTGTGAAGTCACTCCCACGTGGACACGCTTTTGCTACAGT
1 AAGCAGCATGCTTTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTACAGT
* *
8689221 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGAAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* * *
8689282 AAGCAACATGCTATT-TGAGAAGAATTTGTGAAATCACGCCCTCATGGACGCGCTTTTGCTACAG
1 AAGCAGCATGCT-TTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTACAG
* *
8689346 TAGGTCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGAAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * ** * *
8689406 TAGTAGGATGCTTTATGAGAGGAATTTGTGAAATCGTGCCCACGTGAATGCGCTTTTGCTACAGT
1 AAGCAGCATGCTTTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTACAGT
8689471 AG
66 AG
8689473 CATGTTTAGG
Statistics
Matches: 379, Mismatches: 59, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
123 2 0.01
124 59 0.16
125 66 0.17
126 178 0.47
127 74 0.20
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (125 bp):
AAGCAGCATGCTTTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:8692681 original size:113 final size:113
Alignment explanation
Indices: 8692482--8692974 Score: 817
Period size: 113 Copynumber: 4.4 Consensus size: 113
8692472 ATATTTTTTT
**
8692482 AATTATTAATTGATAATTGTATTAATTGTGCGTAAAATTATCAAATTATATCAAATTATTAATTG
1 AATTATTAATTGATAATTGTATTAA-TGTTAGTAAAATTATCAAATTATATCAAATTATTAATTG
8692547 TTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
65 TTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
8692596 AATTATTAATTGATAATTGTATTAATGTTAGTAAAATTATCAAATTATATCAAATTATTAATTGT
1 AATTATTAATTGATAATTGTATTAATGTTAGTAAAATTATCAAATTATATCAAATTATTAATTGT
*
8692661 TAGTACCAGTCAAAATATTTTTCCAAATCTAACATTATGTGAATGTAA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
* *
8692709 AATTATTAACTGATAATTGCATTAATGTTAGTAAAATTATCAAATTATATCAAATTATTAATTGT
1 AATTATTAATTGATAATTGTATTAATGTTAGTAAAATTATCAAATTATATCAAATTATTAATTGT
* * *
8692774 TAGTACTAGTCTAAACAATTTTCCAAATCTAACATTATGTGAATGTAA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
*
8692822 AATTATTAACTGATAATTGTATTAATGTTAG----A--A--AAA-T-TATCAAATTATTAATTGT
1 AATTATTAATTGATAATTGTATTAATGTTAGTAAAATTATCAAATTATATCAAATTATTAATTGT
8692877 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
*
8692925 AATTATTAATCGATAATTGTATTAATGTTAGTAAAATTATCAAATTATAT
1 AATTATTAATTGATAATTGTATTAATGTTAGTAAAATTATCAAATTATAT
8692975 TTAAGTTAAG
Statistics
Matches: 354, Mismatches: 15, Indels: 21
0.91 0.04 0.05
Matches are distributed among these distances:
103 92 0.26
104 1 0.00
105 3 0.01
107 2 0.01
109 2 0.01
111 3 0.01
112 1 0.00
113 225 0.64
114 25 0.07
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.41
Consensus pattern (113 bp):
AATTATTAATTGATAATTGTATTAATGTTAGTAAAATTATCAAATTATATCAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAA
Found at i:8693048 original size:43 final size:44
Alignment explanation
Indices: 8692974--8693449 Score: 580
Period size: 43 Copynumber: 11.0 Consensus size: 44
8692964 TCAAATTATA
8692974 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
8693016 TTTAGGTTAAGGGTTGATGGATTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
8693060 TTTAATTTAAGGGTTTAGGGTTTTAAAGTTAATGG-TTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
*
8693103 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGAAG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG-GGTTTAGGGTT
* *
8693147 TTT-AGTT-AGGGTTTAGAGTTTTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * **
8693189 TTAAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATAAG-T
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTA-GGGTT
* *
8693232 TTTAAGTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
8693276 TTAAAGTTAAGGG-TTAGGGTTTTTAAGATAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
8693319 TTAAAGTTAAGGG-TTAAGGTTTTTAGGTTAAGAGG-CTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG-GGTTTAGGGTT
* *
8693362 TTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
8693406 TTTAATTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
8693449 T
1 T
8693450 GTCAATTAAA
Statistics
Matches: 376, Mismatches: 46, Indels: 23
0.84 0.10 0.05
Matches are distributed among these distances:
41 1 0.00
42 44 0.12
43 206 0.55
44 125 0.33
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (44 bp):
TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:8693084 original size:65 final size:65
Alignment explanation
Indices: 8692974--8693449 Score: 590
Period size: 65 Copynumber: 7.4 Consensus size: 65
8692964 TCAAATTATA
* * *
8692974 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTGATGGA
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTT-AGGGT
8693037 T
65 T
* * * * *
8693038 TTTAATTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTTAGGGTTTTAAAGTTAATGGTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* *
8693103 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGAAG-TTAGGGTTTTT-AGTT-AGGGTTTAGAG
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG-GGTTTAGGGTTTTTAAGTTAAGGG-TTAGGG
8693165 TT
64 TT
* * * **
8693167 TTTAAGTTAAGGGTTTATGGTTTTAAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATAAG
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTA-GGG
8693231 -T
64 TT
* * *
8693232 TTTAAGTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTTAAGGTTTTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * * * *
8693297 TTTAAGATAAGGGTTTAGGGTTTTAAAGTTAAGGG-TTAAGGTTTTTAGGTTAAGAGGCTAGGGT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG-GGTTAGGGT
8693361 T
65 T
* * *
8693362 TTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* *
8693427 TTTAGGTTAAGGGTTTAAGGTTT
1 TTTAAGTTAAGGGTTTAGGGTTT
8693450 GTCAATTAAA
Statistics
Matches: 359, Mismatches: 42, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
63 15 0.04
64 76 0.21
65 211 0.59
66 57 0.16
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (65 bp):
TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:8693458 original size:22 final size:22
Alignment explanation
Indices: 8692974--8693449 Score: 580
Period size: 22 Copynumber: 22.0 Consensus size: 22
8692964 TCAAATTATA
8692974 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
8692995 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
8693016 TTTAGGTTAAGGGTTGATGGAT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693038 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693060 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
8693082 TTAAAGTTAATGG-TTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
8693103 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693125 TTTAAGTTAAGAAG-TTAGGGTT
1 TTTAAGTTAAG-GGTTTAGGGTT
*
8693147 TTT-AGTT-AGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693167 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693189 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
8693210 TTTAGGTTAAGGGTTTATAAG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
8693232 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
8693254 TTTAATTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693276 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693297 TTTAAGATAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
8693319 TTAAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
8693340 TTTAGGTTAAGAGG-CTAGGGTT
1 TTTAAGTTAAG-GGTTTAGGGTT
8693362 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
8693384 TTTAGGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
8693406 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
8693427 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
8693449 T
1 T
8693450 GTCAATTAAA
Statistics
Matches: 388, Mismatches: 54, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
19 1 0.00
20 12 0.03
21 133 0.34
22 240 0.62
23 2 0.01
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:8694021 original size:18 final size:18
Alignment explanation
Indices: 8693995--8694037 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8693985 GACTCGAAAA
* *
8693995 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
8694013 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
8694031 AGGAAAC
1 AGGAAAC
8694038 GCACCTGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:8694671 original size:7 final size:7
Alignment explanation
Indices: 8694659--8694693 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
8694649 ATACATAATG
8694659 CTAAATA
1 CTAAATA
8694666 CTAAATA
1 CTAAATA
8694673 CTAAATA
1 CTAAATA
8694680 CTAAATA
1 CTAAATA
8694687 CTAAATA
1 CTAAATA
8694694 TCAATCGACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (7 bp):
CTAAATA
Found at i:8694900 original size:20 final size:20
Alignment explanation
Indices: 8694863--8694900 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8694853 TTTATTTTTA
*
8694863 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
8694883 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
8694901 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:8695882 original size:51 final size:51
Alignment explanation
Indices: 8695827--8695924 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
8695817 AATTATTTAA
8695827 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * *
8695878 AAATATGGATTTAAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
8695925 GAGAAAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.23, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:8695924 original size:11 final size:10
Alignment explanation
Indices: 8695910--8695962 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 10
8695900 TTGAAGGAAT
8695910 TTGAGAGCAAA
1 TTGAGAG-AAA
8695921 TTGAGAGAAAA
1 TTGAGAG-AAA
*
8695932 TTTAGAAGAAA
1 TTGAG-AGAAA
8695943 TTGAGAGGAAA
1 TTGAGA-GAAA
8695954 TTTGAGAGA
1 -TTGAGAGA
8695963 GGATTAGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 1 0.03
11 27 0.75
12 8 0.22
ACGTcount: A:0.47, C:0.02, G:0.28, T:0.23
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:8695928 original size:33 final size:33
Alignment explanation
Indices: 8695886--8695962 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
8695876 ATAAATATGG
* * *
8695886 ATTTAAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGCAA
*
8695920 A-TTGAGAGAAAATTTAGAAGAAATTGAGAGGAA
1 ATTTGAGAG-AAATTTAGAAGAAATTGAGAGCAA
8695953 ATTTGAGAGA
1 ATTTGAGAGA
8695963 GGATTAGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.47, C:0.01, G:0.26, T:0.26
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGCAA
Found at i:8698863 original size:38 final size:39
Alignment explanation
Indices: 8698806--8698892 Score: 131
Period size: 38 Copynumber: 2.3 Consensus size: 39
8698796 ATTTATTTAA
*
8698806 AGGAGTAGTTTTCTATATTATAGGAAGTAGAAGATGAAT
1 AGGAGTAGTTTTCTATATTATAGGAAGTAGAAGACGAAT
* * *
8698845 AGGAATAGTTTT-TATATTATAGGAAGTAGAGGGCGAAT
1 AGGAGTAGTTTTCTATATTATAGGAAGTAGAAGACGAAT
8698883 AGGAGTAGTT
1 AGGAGTAGTT
8698893 CTCCTATTTC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 32 0.74
39 11 0.26
ACGTcount: A:0.37, C:0.02, G:0.29, T:0.32
Consensus pattern (39 bp):
AGGAGTAGTTTTCTATATTATAGGAAGTAGAAGACGAAT
Found at i:8704835 original size:80 final size:81
Alignment explanation
Indices: 8704743--8704903 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 81
8704733 TACTATTCTC
* *
8704743 ATTAATTAAACATACATTTAATAACAAAAA-TTATAACTTCCTTTGATATTAAAGAAAGCTAATT
1 ATTAATTAAACATACATTTAATAAAAAAAATTTAGAACTTCCTTTGATATTAAAGAAAGCTAATT
8704807 CATTCCATATATATAT
66 CATTCCATATATATAT
8704823 ATTAATTAAACATACATTTAATAAAAAAAATTTAGAACTTCCTTTGATATTAAAGAAAGCTAATT
1 ATTAATTAAACATACATTTAATAAAAAAAATTTAGAACTTCCTTTGATATTAAAGAAAGCTAATT
8704888 CATTCCATATATATAT
66 CATTCCATATATATAT
8704904 TTTTTATTAA
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
80 29 0.37
81 49 0.63
ACGTcount: A:0.47, C:0.12, G:0.04, T:0.37
Consensus pattern (81 bp):
ATTAATTAAACATACATTTAATAAAAAAAATTTAGAACTTCCTTTGATATTAAAGAAAGCTAATT
CATTCCATATATATAT
Found at i:8704933 original size:81 final size:80
Alignment explanation
Indices: 8704743--8704926 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 80
8704733 TACTATTCTC
** * * *
8704743 ATTAATTAAACATACATTTAATAACAAAAATTATAACTTCCTTTGATATTAAAGAAAGCTAATTC
1 ATTAATTAAACATACAGCTAACAAAAAAAATTAGAACTTCCTTTGATATTAAAGAAAGCTAATTC
8704808 ATTCCATATATATAT
66 ATTCCATATATATAT
** *
8704823 ATTAATTAAACATACATTTAATAAAAAAAATTTAGAACTTCCTTTGATATTAAAGAAAGCTAATT
1 ATTAATTAAACATACAGCTAACAAAAAAAA-TTAGAACTTCCTTTGATATTAAAGAAAGCTAATT
8704888 CATTCCATATATATATT
65 CATTCCATATATATA-T
* *
8704905 TTTTATTAAA-ATA-AGCTAACAA
1 ATTAATTAAACATACAGCTAACAA
8704927 CGAAAAAGTG
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
80 35 0.37
81 51 0.54
82 9 0.09
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (80 bp):
ATTAATTAAACATACAGCTAACAAAAAAAATTAGAACTTCCTTTGATATTAAAGAAAGCTAATTC
ATTCCATATATATAT
Found at i:8705448 original size:27 final size:27
Alignment explanation
Indices: 8705440--8705572 Score: 185
Period size: 27 Copynumber: 4.9 Consensus size: 27
8705430 CAACGGCAGT
* *
8705440 CAAGGATGGTAACGTGCCAATTCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
* *
8705467 TACGGATGGTAACATGCCAATGCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
8705494 CAAGGATGGTAACATGCCAATGCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
*
8705521 CAAGGATGGTAATATGCCAATGCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
* * **
8705548 CATGGCTGGTAATTTGCCAATGCCA
1 CAAGGATGGTAACATGCCAATGCCA
8705573 ATGCCAATGC
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.20
Consensus pattern (27 bp):
CAAGGATGGTAACATGCCAATGCCAGG
Found at i:8708193 original size:22 final size:22
Alignment explanation
Indices: 8708165--8708225 Score: 122
Period size: 22 Copynumber: 2.8 Consensus size: 22
8708155 ACGGTAGAGA
8708165 AAGACGACATCGAAAGTATAAC
1 AAGACGACATCGAAAGTATAAC
8708187 AAGACGACATCGAAAGTATAAC
1 AAGACGACATCGAAAGTATAAC
8708209 AAGACGACATCGAAAGT
1 AAGACGACATCGAAAGT
8708226 TGAAACTCCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.49, C:0.18, G:0.20, T:0.13
Consensus pattern (22 bp):
AAGACGACATCGAAAGTATAAC
Found at i:8709960 original size:30 final size:30
Alignment explanation
Indices: 8709924--8709984 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8709914 ACTTAGTTAC
8709924 AGGTATATAAGGAAACCCAATAACGGTCTA
1 AGGTATATAAGGAAACCCAATAACGGTCTA
8709954 AGGTATATAAGGAAACCCAATAACGGTCTA
1 AGGTATATAAGGAAACCCAATAACGGTCTA
8709984 A
1 A
8709985 CACCAATAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (30 bp):
AGGTATATAAGGAAACCCAATAACGGTCTA
Found at i:8715798 original size:36 final size:36
Alignment explanation
Indices: 8715758--8715828 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
8715748 ATCAAGGGCT
*
8715758 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
8715794 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
8715829 TTACATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:8715799 original size:19 final size:19
Alignment explanation
Indices: 8715775--8715828 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
8715765 AAAGTTGTAT
8715775 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
8715794 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
8715811 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
8715829 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:8715816 original size:17 final size:17
Alignment explanation
Indices: 8715757--8715820 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
8715747 CATCAAGGGC
* *
8715757 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
8715774 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
8715793 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
8715810 TACAATTAGAA
1 TACAATTAGAA
8715821 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 11 0.30
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:8720907 original size:17 final size:17
Alignment explanation
Indices: 8720885--8720948 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
8720875 CATCAAGGGC
*
8720885 TACAATTAAAAGTTGTA
1 TACAATTAGAAGTTGTA
*
8720902 TACAATTAGAACTCTAAG-A
1 TACAATTAGAAGT-T--GTA
*
8720921 TACAATTAGAAGCTGTA
1 TACAATTAGAAGTTGTA
8720938 TACAATTAGAA
1 TACAATTAGAA
8720949 CTCTAAGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 1 0.03
17 23 0.59
18 2 0.05
19 12 0.31
20 1 0.03
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (17 bp):
TACAATTAGAAGTTGTA
Found at i:8720925 original size:19 final size:19
Alignment explanation
Indices: 8720901--8720962 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
8720891 TAAAAGTTGT
8720901 ATACAATTAGAACTCTAAG
1 ATACAATTAGAACTCTAAG
*
8720920 ATACAATTAGAA-GCT--G
1 ATACAATTAGAACTCTAAG
8720936 TATACAATTAGAACTCTAAG
1 -ATACAATTAGAACTCTAAG
8720956 ATTACAA
1 A-TACAA
8720963 AATCATATCT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
16 1 0.03
17 12 0.33
18 4 0.11
19 13 0.36
20 6 0.17
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (19 bp):
ATACAATTAGAACTCTAAG
Found at i:8720925 original size:36 final size:37
Alignment explanation
Indices: 8720885--8720962 Score: 131
Period size: 36 Copynumber: 2.1 Consensus size: 37
8720875 CATCAAGGGC
*
8720885 TACAATTAAAAGTTGTATACAATTAGAACTCTAAGA-
1 TACAATTAAAAGCTGTATACAATTAGAACTCTAAGAT
*
8720921 TACAATTAGAAGCTGTATACAATTAGAACTCTAAGAT
1 TACAATTAAAAGCTGTATACAATTAGAACTCTAAGAT
8720958 TACAA
1 TACAA
8720963 AATCATATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 34 0.87
37 5 0.13
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (37 bp):
TACAATTAAAAGCTGTATACAATTAGAACTCTAAGAT
Found at i:8725629 original size:41 final size:41
Alignment explanation
Indices: 8725385--8725623 Score: 299
Period size: 41 Copynumber: 5.8 Consensus size: 41
8725375 TTAAACAGAT
** * * *
8725385 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
8725427 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
8725467 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
8725508 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
8725549 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
8725588 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
8725624 TATTACATTC
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 167 0.92
42 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:8727846 original size:17 final size:16
Alignment explanation
Indices: 8727824--8727877 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
8727814 CTATAGACTA
8727824 TGAAACTACTTATATAC
1 TGAAACTAC-TATATAC
*
8727841 TGAAACTA-TAAATTA-
1 TGAAACTACTATA-TAC
8727856 TGAAACTACATATATAC
1 TGAAACTAC-TATATAC
8727873 TGAAA
1 TGAAA
8727878 TTTTAAATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
15 11 0.35
16 4 0.13
17 16 0.52
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (16 bp):
TGAAACTACTATATAC
Found at i:8727850 original size:32 final size:32
Alignment explanation
Indices: 8727812--8727895 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
8727802 TACTTATTTC
* *
8727812 AACTATAGACTATGAAACTACTTATATACTGA
1 AACTATAAACTATGAAACTACATATATACTGA
*
8727844 AACTATAAATTATGAAACTACATATATACTGA
1 AACTATAAACTATGAAACTACATATATACTGA
* * * *
8727876 AATTTTAAATTGTGAAACTA
1 AACTATAAACTATGAAACTA
8727896 TGGACTATGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (32 bp):
AACTATAAACTATGAAACTACATATATACTGA
Found at i:8731827 original size:3 final size:3
Alignment explanation
Indices: 8731819--8731843 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8731809 AAATATGAGG
8731819 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
8731844 CAGTAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8733287 original size:25 final size:25
Alignment explanation
Indices: 8733253--8733303 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8733243 CTCCTATGAC
8733253 TAAGTTTTTGAGGAATAGTGTACCA
1 TAAGTTTTTGAGGAATAGTGTACCA
8733278 TAAGTTTTTGAGGAATAGTGTACCA
1 TAAGTTTTTGAGGAATAGTGTACCA
8733303 T
1 T
8733304 TCAAGTGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
TAAGTTTTTGAGGAATAGTGTACCA
Found at i:8738199 original size:29 final size:29
Alignment explanation
Indices: 8738163--8738220 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
8738153 CTGCTGGTTT
8738163 ACAATCTGAAATGCCTGCCATCTCTGGTC
1 ACAATCTGAAATGCCTGCCATCTCTGGTC
8738192 ACAATCTGAAATGCCTGCCATCTCTGGTC
1 ACAATCTGAAATGCCTGCCATCTCTGGTC
8738221 TAACCCTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (29 bp):
ACAATCTGAAATGCCTGCCATCTCTGGTC
Found at i:8742235 original size:40 final size:40
Alignment explanation
Indices: 8742191--8742271 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
8742181 GGTATATGCC
8742191 ATTTCATTAACAAAGATGTGTTGATTAGAAAAAACTACTA
1 ATTTCATTAACAAAGATGTGTTGATTAGAAAAAACTACTA
8742231 ATTTCATTAACAAAGATGTGTTGATTAGAAAAAACTACTA
1 ATTTCATTAACAAAGATGTGTTGATTAGAAAAAACTACTA
8742271 A
1 A
8742272 CTCATGGAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (40 bp):
ATTTCATTAACAAAGATGTGTTGATTAGAAAAAACTACTA
Found at i:8743068 original size:33 final size:33
Alignment explanation
Indices: 8743022--8743090 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
8743012 GATATGGAAT
*
8743022 GGTTATTTGAATGACTAGTTTGGTATAATTTTA
1 GGTTATTTAAATGACTAGTTTGGTATAATTTTA
8743055 GGTTATTTAAATGACTAGTTTGGTATAATTTTA
1 GGTTATTTAAATGACTAGTTTGGTATAATTTTA
8743088 GGT
1 GGT
8743091 ATGTTTTGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.03, G:0.22, T:0.48
Consensus pattern (33 bp):
GGTTATTTAAATGACTAGTTTGGTATAATTTTA
Found at i:8754868 original size:9 final size:9
Alignment explanation
Indices: 8754845--8754905 Score: 61
Period size: 9 Copynumber: 6.8 Consensus size: 9
8754835 ACTGCAACAA
*
8754845 CAACAACAG
1 CAACAGCAG
*
8754854 CAACAGCAA
1 CAACAGCAG
*
8754863 CAACAGCGG
1 CAACAGCAG
*
8754872 CAGCAGCAG
1 CAACAGCAG
8754881 CAACAGCAG
1 CAACAGCAG
*
8754890 CAAGCA-AAG
1 CAA-CAGCAG
8754899 CAACAGC
1 CAACAGC
8754906 TGTCCACTCA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.46, C:0.33, G:0.21, T:0.00
Consensus pattern (9 bp):
CAACAGCAG
Found at i:8754875 original size:15 final size:15
Alignment explanation
Indices: 8754838--8754905 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
8754828 AGCAGCTACT
*
8754838 GCAACAACAACAACA
1 GCAACAGCAACAACA
8754853 GCAACAGCAACAACA
1 GCAACAGCAACAACA
** * *
8754868 GCGGCAGCAGCAGCA
1 GCAACAGCAACAACA
* *
8754883 ACAGCAGCAAGCAA-A
1 GCAACAGCAA-CAACA
8754898 GCAACAGC
1 GCAACAGC
8754906 TGTCCACTCA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
15 39 0.95
16 2 0.05
ACGTcount: A:0.47, C:0.32, G:0.21, T:0.00
Consensus pattern (15 bp):
GCAACAGCAACAACA
Found at i:8760617 original size:15 final size:15
Alignment explanation
Indices: 8760597--8760626 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8760587 TATTTTATTT
*
8760597 ATATTAGGATAATTA
1 ATATTAAGATAATTA
8760612 ATATTAAGATAATTA
1 ATATTAAGATAATTA
8760627 TTAAGGATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:8764569 original size:4 final size:4
Alignment explanation
Indices: 8764554--8764622 Score: 51
Period size: 4 Copynumber: 17.5 Consensus size: 4
8764544 CAACCCAATT
8764554 TTTA TTTA --TA TTTA -TTA TTTA -TTA TTTTA TTTTA TTTA CTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA TTTA -TTTA TTTA
8764601 -TTA CTTTA TTT- TATTA TTTA TT
1 TTTA -TTTA TTTA T-TTA TTTA TT
8764623 ACTTATTTGG
Statistics
Matches: 55, Mismatches: 0, Indels: 20
0.73 0.00 0.27
Matches are distributed among these distances:
2 2 0.04
3 10 0.18
4 27 0.49
5 16 0.29
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:8764573 original size:13 final size:13
Alignment explanation
Indices: 8764551--8764621 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
8764541 AGGCAACCCA
*
8764551 ATTTTTATTTA-T
1 ATTTATATTTATT
8764563 ATTTATTATTTATT
1 ATTTA-TATTTATT
8764577 ATTT-TATTTTATTT
1 ATTTATA-TTTA-TT
*
8764591 ACTT-TATTTATT
1 ATTTATATTTATT
8764603 ACTTTAT-TTTATT
1 A-TTTATATTTATT
8764616 ATTTAT
1 ATTTAT
8764622 TACTTATTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
12 14 0.28
13 23 0.46
14 13 0.26
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTATATTTATT
Found at i:8764580 original size:20 final size:21
Alignment explanation
Indices: 8764551--8764626 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 21
8764541 AGGCAACCCA
8764551 ATTT-TTA-TTTATATTTATT
1 ATTTATTACTTTATATTTATT
*
8764570 ATTTATTATTTTATTTTATTTACTTT
1 ATTTATTACTTTA---TATTTA--TT
8764596 ATTTATTACTTTAT-TTTATT
1 ATTTATTACTTTATATTTATT
8764616 ATTTATTACTT
1 ATTTATTACTT
8764627 ATTTGGATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 13
0.78 0.02 0.21
Matches are distributed among these distances:
19 4 0.08
20 16 0.33
21 4 0.08
22 4 0.08
23 1 0.02
24 6 0.12
26 14 0.29
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTATTACTTTATATTTATT
Found at i:8764580 original size:26 final size:25
Alignment explanation
Indices: 8764553--8764629 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 25
8764543 GCAACCCAAT
8764553 TTTTATTTATATTTATTATTTATTA
1 TTTTATTTATATTTATTATTTATTA
8764578 TTTTATTT-TATTTACTTTATTTATTA
1 TTTTATTTATATTTA--TTATTTATTA
* *
8764604 CTTTATTTTATTATTTATTACTTATT
1 TTTTA-TTTA-TATTTATTATTTATT
8764630 TGGATATTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
24 6 0.13
25 8 0.18
26 14 0.31
27 11 0.24
29 6 0.13
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTATTTATATTTATTATTTATTA
Found at i:8765943 original size:17 final size:18
Alignment explanation
Indices: 8765923--8765974 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
8765913 TTCCTAAAGT
8765923 ATAAAAAAATATAAAT-A
1 ATAAAAAAATATAAATAA
* *
8765940 ATAAATAAATAAAAATCAAA
1 ATAAAAAAATATAAAT--AA
8765960 ATAAAAAAAATATAA
1 AT-AAAAAAATATAA
8765975 TTTGAGGGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 14 0.52
20 3 0.11
21 10 0.37
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (18 bp):
ATAAAAAAATATAAATAA
Found at i:8765953 original size:23 final size:21
Alignment explanation
Indices: 8765927--8765971 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 21
8765917 TAAAGTATAA
8765927 AAAAAT-ATAAATAATAAATAAAT
1 AAAAATCA-AAATAA-AAA-AAAT
8765950 AAAAATCAAAATAAAAAAAAT
1 AAAAATCAAAATAAAAAAAAT
8765971 A
1 A
8765972 TAATTTGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 12 0.57
24 1 0.05
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (21 bp):
AAAAATCAAAATAAAAAAAAT
Found at i:8771702 original size:21 final size:21
Alignment explanation
Indices: 8771676--8771718 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8771666 GAGATATTAG
8771676 AATTTAAAGTTTGTTGTGTTA
1 AATTTAAAGTTTGTTGTGTTA
8771697 AATTTAAAGTTTGTTGTGTTA
1 AATTTAAAGTTTGTTGTGTTA
8771718 A
1 A
8771719 TAGTTTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (21 bp):
AATTTAAAGTTTGTTGTGTTA
Found at i:8774841 original size:3 final size:3
Alignment explanation
Indices: 8774835--8774866 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8774825 TTCAAAGCAA
8774835 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8774867 GATACTGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8780188 original size:26 final size:26
Alignment explanation
Indices: 8780153--8780204 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
8780143 AGTTATACTG
8780153 AAATTTGTTCTATTATAAGTTGTCTA
1 AAATTTGTTCTATTATAAGTTGTCTA
*
8780179 AAATTTGTTCTATTATCAGTTGTCTA
1 AAATTTGTTCTATTATAAGTTGTCTA
8780205 TCTATTTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (26 bp):
AAATTTGTTCTATTATAAGTTGTCTA
Found at i:8785221 original size:31 final size:31
Alignment explanation
Indices: 8785186--8785246 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
8785176 TAAGAATAGA
8785186 AAAGATATATAATATATTCTTAAATATATGG
1 AAAGATATATAATATATTCTTAAATATATGG
8785217 AAAGATATATAATATATTCTTAAATATATG
1 AAAGATATATAATATATTCTTAAATATATG
8785247 TCTAAAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.39
Consensus pattern (31 bp):
AAAGATATATAATATATTCTTAAATATATGG
Found at i:8796028 original size:438 final size:438
Alignment explanation
Indices: 8795169--8796052 Score: 1696
Period size: 438 Copynumber: 2.0 Consensus size: 438
8795159 ACTCTTAACT
8795169 GAGATAGGATCACAAGTTAATTCAACACCAACTCAATTAAGAAAATATCAAAAGAACCAGTATTT
1 GAGATAGGATCACAAGTTAATTCAACACCAACTCAATTAAGAAAATATCAAAAGAACCAGTATTT
8795234 TCAAAAATATTATAATAAGGGTGACTATGTCATTTAATATTTTTAATACAATATCTTTGAAAAAA
66 TCAAAAATATTATAATAAGGGTGACTATGTCATTTAATATTTTTAATACAATATCTTTGAAAAAA
8795299 AAATAACCATTTATTTTTAAAAATTACTATATACAAAAACAACTATGAACTACCCACCTCCTGTA
131 AAATAACCATTTATTTTTAAAAATTACTATATACAAAAACAACTATGAACTACCCACCTCCTGTA
8795364 AGAACAGTACTTTCACCAAAAAAAAAAGCACCAACAATTAAAAAAGTTCTATGTATATTTATCTT
196 AGAACAGTACTTTCACCAAAAAAAAAAGCACCAACAATTAAAAAAGTTCTATGTATATTTATCTT
8795429 TTTTTAAGCGTTGCAAGTGCGAAACATAAGTGTTTTCGTCACCAAAATATGCGTCATAAGGTAAT
261 TTTTTAAGCGTTGCAAGTGCGAAACATAAGTGTTTTCGTCACCAAAATATGCGTCATAAGGTAAT
8795494 CTAGTATCAAGTTAATGAAGTAGCTGAAAGGAAGAAAAGAAAGAAACCAGACCAAGAAGGAAATA
326 CTAGTATCAAGTTAATGAAGTAGCTGAAAGGAAGAAAAGAAAGAAACCAGACCAAGAAGGAAATA
8795559 GGAGAAGAGTAATCACTGATTTGGGGGGGGGGAGGCAAAATATAAACA
391 GGAGAAGAGTAATCACTGATTTGGGGGGGGGGAGGCAAAATATAAACA
8795607 GAGATAGGATCACAAGTTAATTCAACACCAACTCAATTAAGAAAATATCAAAAGAACCAGTATTT
1 GAGATAGGATCACAAGTTAATTCAACACCAACTCAATTAAGAAAATATCAAAAGAACCAGTATTT
*
8795672 TCAAAAATATTATAATAAGGGTGACTATGTCTTTTAATATTTTTAATACAATATCTTTGAAAAAA
66 TCAAAAATATTATAATAAGGGTGACTATGTCATTTAATATTTTTAATACAATATCTTTGAAAAAA
8795737 AAATAACCATTTATTTTTAAAAATTACTATATACAAAAACAACTATGAACTACCCACCTCCTGTA
131 AAATAACCATTTATTTTTAAAAATTACTATATACAAAAACAACTATGAACTACCCACCTCCTGTA
*
8795802 AGAACAGTACTTTCACCAAAAAAAAAAAGCATCAACAATTAAAAAAAGTTCTATGTATATTTATC
196 AGAACAGTACTTTCACC-AAAAAAAAAAGCACCAACAATT-AAAAAAGTTCTATGTATATTTATC
*
8795867 TTTTTTTAAGCGTTGCAAGTGCGAAACATAAGTGTTTTCGTCGCCAAAATATGCGTCATAAGGTA
259 TTTTTTTAAGCGTTGCAAGTGCGAAACATAAGTGTTTTCGTCACCAAAATATGCGTCATAAGGTA
*
8795932 ATCTAGTATCAAGTTAATGAAGTAGCTGAAAGGAAGAAAAGAAAGAAGCCAGACCAAGAAGGAAA
324 ATCTAGTATCAAGTTAATGAAGTAGCTGAAAGGAAGAAAAGAAAGAAACCAGACCAAGAAGGAAA
8795997 TAGGAGAAGAGTAATCACTGATTTTGGGGGGGGGGGAGGCAAAATATAAACA
389 TAGGAGAAGAGTAATCACTGA-TTT-GGGGGGGGGGAGGCAAAATATAAACA
8796049 GAGA
1 GAGA
8796053 AGCAACTTTG
Statistics
Matches: 438, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
438 211 0.48
439 21 0.05
440 173 0.39
441 3 0.01
442 30 0.07
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (438 bp):
GAGATAGGATCACAAGTTAATTCAACACCAACTCAATTAAGAAAATATCAAAAGAACCAGTATTT
TCAAAAATATTATAATAAGGGTGACTATGTCATTTAATATTTTTAATACAATATCTTTGAAAAAA
AAATAACCATTTATTTTTAAAAATTACTATATACAAAAACAACTATGAACTACCCACCTCCTGTA
AGAACAGTACTTTCACCAAAAAAAAAAGCACCAACAATTAAAAAAGTTCTATGTATATTTATCTT
TTTTTAAGCGTTGCAAGTGCGAAACATAAGTGTTTTCGTCACCAAAATATGCGTCATAAGGTAAT
CTAGTATCAAGTTAATGAAGTAGCTGAAAGGAAGAAAAGAAAGAAACCAGACCAAGAAGGAAATA
GGAGAAGAGTAATCACTGATTTGGGGGGGGGGAGGCAAAATATAAACA
Found at i:8801400 original size:17 final size:17
Alignment explanation
Indices: 8801360--8801401 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
8801350 CTATTTGGGC
*
8801360 CGTGTGGGCCACACGGG
1 CGTGTGTGCCACACGGG
8801377 CGTGTGTGCCACACGGG
1 CGTGTGTGCCACACGGG
8801394 CGTGTGTG
1 CGTGTGTG
8801402 AGGTCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.10, C:0.26, G:0.45, T:0.19
Consensus pattern (17 bp):
CGTGTGTGCCACACGGG
Found at i:8803344 original size:37 final size:37
Alignment explanation
Indices: 8803252--8803449 Score: 197
Period size: 37 Copynumber: 5.4 Consensus size: 37
8803242 GTGTTGTATG
* * *
8803252 CTGAATGAAGCTCAAAC-GAGCAAAATCTA-GTAATATA
1 CTGAATAAAGCTC-AACTGAGCGAAATCTACG-GATATA
* * *
8803289 CTG-A-AAAGCTTAAGTGAGCCAAATCTACGGATATA
1 CTGAATAAAGCTCAACTGAGCGAAATCTACGGATATA
* * *
8803324 GTGAATAAAGCTCAACTGAGCAAAATCTATGGATATA
1 CTGAATAAAGCTCAACTGAGCGAAATCTACGGATATA
* * * *
8803361 CTGAATAAATCTGAATTGAGTGAAATCTACGGATATA
1 CTGAATAAAGCTCAACTGAGCGAAATCTACGGATATA
* * * *
8803398 CTAAATAAAGCTCAACTAAGCGATATCTACTGATATA
1 CTGAATAAAGCTCAACTGAGCGAAATCTACGGATATA
8803435 CTGAATAAAGCTCAA
1 CTGAATAAAGCTCAA
8803450 TCGAGCATTA
Statistics
Matches: 131, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
34 2 0.02
35 23 0.18
36 3 0.02
37 103 0.79
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.25
Consensus pattern (37 bp):
CTGAATAAAGCTCAACTGAGCGAAATCTACGGATATA
Found at i:8828287 original size:20 final size:20
Alignment explanation
Indices: 8828249--8828287 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8828239 CTATAAAAAA
* * *
8828249 ATAAGAAGAAACCTTTTTTT
1 ATAAGAAAAAAACTCTTTTT
8828269 ATAAGAAAAAAACTCTTTT
1 ATAAGAAAAAAACTCTTTT
8828288 AGAGCAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (20 bp):
ATAAGAAAAAAACTCTTTTT
Found at i:8830922 original size:17 final size:17
Alignment explanation
Indices: 8830897--8830930 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8830887 ATATGGAAAC
*
8830897 TAATCTTAGAAGATTTG
1 TAATATTAGAAGATTTG
8830914 TAATATTAGAAGATTTG
1 TAATATTAGAAGATTTG
8830931 ATTTCGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (17 bp):
TAATATTAGAAGATTTG
Found at i:8830940 original size:23 final size:22
Alignment explanation
Indices: 8830908--8830951 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
8830898 AATCTTAGAA
8830908 GATTTGTAATATTAGAAGATTT
1 GATTTGTAATATTAGAAGATTT
* *
8830930 GATTTCGTAATGTTAGAGGATT
1 GATTT-GTAATATTAGAAGATT
8830952 GTGTAAATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (22 bp):
GATTTGTAATATTAGAAGATTT
Found at i:8832339 original size:46 final size:46
Alignment explanation
Indices: 8832269--8832407 Score: 154
Period size: 46 Copynumber: 3.0 Consensus size: 46
8832259 TATTGCCCAC
* * * *
8832269 AGGTTCCGAGGTCTAGCATTTGTTGCGAACTTGAGAATACAAGAAT
1 AGGTTCCGAGCTCCAGCATATGTTGCGGACTTGAGAATACAAGAAT
* * * **
8832315 AGGTTCCGAGCTCCAGTA-AGTGTTGCGGACTCGAGAATACAGGTTT
1 AGGTTCCGAGCTCCAGCATA-TGTTGCGGACTTGAGAATACAAGAAT
* * *
8832361 AGGTTCTGAGCTCCTGCATATGTTGCGGACTTGAGAATATAAGAAT
1 AGGTTCCGAGCTCCAGCATATGTTGCGGACTTGAGAATACAAGAAT
8832407 A
1 A
8832408 TTAAGCCCAA
Statistics
Matches: 74, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
46 73 0.99
47 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (46 bp):
AGGTTCCGAGCTCCAGCATATGTTGCGGACTTGAGAATACAAGAAT
Found at i:8835264 original size:20 final size:20
Alignment explanation
Indices: 8835236--8835275 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8835226 CCATAGACCC
*
8835236 AGAGTTAGTCCGTGAACCTT
1 AGAGCTAGTCCGTGAACCTT
**
8835256 AGAGCTAGTTTGTGAACCTT
1 AGAGCTAGTCCGTGAACCTT
8835276 CAGAACAAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (20 bp):
AGAGCTAGTCCGTGAACCTT
Found at i:8839482 original size:2 final size:2
Alignment explanation
Indices: 8839475--8839504 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8839465 TGAATGATGA
8839475 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8839505 GGTAAAGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8841327 original size:19 final size:19
Alignment explanation
Indices: 8841303--8841386 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 19
8841293 TAGGAGTTAA
8841303 GGATTTAGGGTTTAGCTAG
1 GGATTTAGGGTTTAGCTAG
*
8841322 GGATTTAGGGGTTAGACGTTATG
1 GGATTTAGGGTTTAG-C--TA-G
8841345 GG--TTAGGAG-TTA---A-
1 GGATTTAGG-GTTTAGCTAG
8841358 GGATTTAGGGTTTAGCTAG
1 GGATTTAGGGTTTAGCTAG
8841377 GGATTTAGGG
1 GGATTTAGGG
8841387 GTCAGATTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 24
0.68 0.01 0.31
Matches are distributed among these distances:
13 2 0.04
14 1 0.02
15 9 0.17
18 1 0.02
19 24 0.46
20 1 0.02
21 8 0.15
22 3 0.06
23 3 0.06
ACGTcount: A:0.23, C:0.04, G:0.39, T:0.35
Consensus pattern (19 bp):
GGATTTAGGGTTTAGCTAG
Found at i:8841333 original size:55 final size:55
Alignment explanation
Indices: 8841274--8841393 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 55
8841264 GGTTAGGGTC
8841274 GGGGTTAGATGTTAGGGGTTAGGAGTTAAGGATTTAGGGTTTAGCTAGGGATTTA
1 GGGGTTAGATGTTAGGGGTTAGGAGTTAAGGATTTAGGGTTTAGCTAGGGATTTA
* *
8841329 GGGGTTAGACGTTATGGGTTAGGAGTTAAGGATTTAGGGTTTAGCTAGGGATTTA
1 GGGGTTAGATGTTAGGGGTTAGGAGTTAAGGATTTAGGGTTTAGCTAGGGATTTA
*
8841384 GGGGTCAGAT
1 GGGGTTAGAT
8841394 TAGGGTATTG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.23, C:0.03, G:0.40, T:0.33
Consensus pattern (55 bp):
GGGGTTAGATGTTAGGGGTTAGGAGTTAAGGATTTAGGGTTTAGCTAGGGATTTA
Found at i:8842025 original size:14 final size:14
Alignment explanation
Indices: 8841976--8842028 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
8841966 TGGGATATAA
8841976 GGGTT-AGGAGTTAG
1 GGGTTAAGG-GTTAG
*
8841990 GGGTTAAGAGTTTAG
1 GGGTTAAG-GGTTAG
**
8842005 GATTTAAGGGTTAG
1 GGGTTAAGGGTTAG
8842019 GGGTTAAGGG
1 GGGTTAAGGG
8842029 ATTAATGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
14 18 0.58
15 12 0.39
16 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (14 bp):
GGGTTAAGGGTTAG
Found at i:8842043 original size:29 final size:28
Alignment explanation
Indices: 8841979--8842045 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
8841969 GATATAAGGG
*
8841979 TTAGGAGTTAGGGGTTAAGAGTTTAGGAT
1 TTAGG-GTTAGGGGTTAAGAGTTAAGGAT
* *
8842008 TTAAGGGTTAGGGGTTAAGGGATTAATGAT
1 TT-AGGGTTAGGGGTTAAGAG-TTAAGGAT
8842038 TTAGGGTT
1 TTAGGGTT
8842046 TAGGAATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 22 0.67
30 11 0.33
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.36
Consensus pattern (28 bp):
TTAGGGTTAGGGGTTAAGAGTTAAGGAT
Found at i:8842915 original size:270 final size:270
Alignment explanation
Indices: 8842405--8843058 Score: 830
Period size: 270 Copynumber: 2.4 Consensus size: 270
8842395 AAATCGCCGC
* * * * **
8842405 AAATATTGGATGCATTAGTGGCGTTTTTACAAG-AAACGCCGCAAAAGTGTCTTAAAATTTTGAG
1 AAAT-TTGGAAGCAATAGTGGCGTTTTTAC-AGTAAACGCCGCAAAAGGGTATTAAAATAATGAG
* * * * *
8842469 TAAACGACGCCGTTTCTCTCCACGATTTTTAACTTATAAAAAGTTTAGAATTATTTACTTAAAAC
64 TAAACGGCGCCGTTTCTGTACACGATTTTTAACTTAGAAAAATTTTAGAATTATTTACTTAAAAC
* ** * * *
8842534 GTCACCGTTTGGCTTAAAGTACGTTAAGTATTAGTGGCGTTTTAACATAAAACGCCAGAAACAAT
129 ATCACCGTTTGGCTTAAAGTAAATTAAGTATTAATAGCGTTTTAACATAAAACACCAGAAACAAT
* ** * *
8842599 GCAATTTGAGAGTAACAAAACGGCGCCGTTTCTGTTTACGACTTTAAATATTT-GTGGCGTTTTT
194 GCAATTTGAGACTAACAAAACGGCGCCGTTTCCCTTTACAACTTT-AATATTTAGTGGCATTTTT
*
8842663 -GGCAAAACACCGG
258 AGG-AAAACACCGA
* * * **
8842676 AACTTTGGAAGCAATAGCGGCGTTTGTACAGTAAACGCCGCAAAAGGGTATTAAAATAATGTCTA
1 AAATTTGGAAGCAATAGTGGCGTTTTTACAGTAAACGCCGCAAAAGGGTATTAAAATAATGAGTA
* *
8842741 AACGGCACCGTTTCTGTACACGATTTTTAACTTA-AAGAAATTTTAGAATTATTTATTTAAAACA
66 AACGGCGCCGTTTCTGTACACGATTTTTAACTTAGAA-AAATTTTAGAATTATTTACTTAAAACA
* * * *
8842805 TCACCGTTTGGGTTAAAGTAAATTAAGTATTAATAGCGTTTTTACATAAAACACTAGAAATAATG
130 TCACCGTTTGGCTTAAAGTAAATTAAGTATTAATAGCGTTTTAACATAAAACACCAGAAACAATG
8842870 CAATTTGAGACTAACAAAACGGCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCATTTTTAG
195 CAATTTGAGACTAACAAAACGGCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCATTTTTAG
*
8842935 GAAAACGCCGA
260 GAAAACACCGA
* * * * * * *
8842946 AAATGTGGAATCAATAGTGGCGTTTTTATAGTAAATGCCGCAAAAGGGTATTAGAGTAATGGGTA
1 AAATTTGGAAGCAATAGTGGCGTTTTTACAGTAAACGCCGCAAAAGGGTATTAAAATAATGAGTA
* **
8843011 AACGGTGCCGTTTCTGTGTACGATTTTTAACTTAGAAAAATTTTAGAA
66 AACGGCGCCGTTTCTGTACACGATTTTTAACTTAGAAAAATTTTAGAA
8843059 ATCAAGTATT
Statistics
Matches: 329, Mismatches: 49, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
269 11 0.03
270 311 0.95
271 7 0.02
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (270 bp):
AAATTTGGAAGCAATAGTGGCGTTTTTACAGTAAACGCCGCAAAAGGGTATTAAAATAATGAGTA
AACGGCGCCGTTTCTGTACACGATTTTTAACTTAGAAAAATTTTAGAATTATTTACTTAAAACAT
CACCGTTTGGCTTAAAGTAAATTAAGTATTAATAGCGTTTTAACATAAAACACCAGAAACAATGC
AATTTGAGACTAACAAAACGGCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCATTTTTAGG
AAAACACCGA
Found at i:8843239 original size:233 final size:233
Alignment explanation
Indices: 8842824--8843291 Score: 665
Period size: 233 Copynumber: 2.0 Consensus size: 233
8842814 GGGTTAAAGT
* * * *
8842824 AAATTAAGTATTAATAGCGTTTTTACATAAAACACTAGAAATAATGCAATTTGAGACTAACAAAA
1 AAATCAAGTATTAATAGCGTTTTTACATAAAACACCAGAAAAAATGCAATTAGAGACTAACAAAA
8842889 CGGCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCATTTTTAGGAAAACGCCGAAAATGTGG
66 CGGCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCATTTTTAGGAAAACGCCGAAAATGTGG
** * * * * * **
8842954 AATCAATAGTGGCGTTTTTATAGTAAATGCCGCAAAAGGGTATTAGAGTAATGGGTAAACGGTGC
131 AATCAATAACGGCGTTTGTATAGAAAATGCAGCAAAAGGGTATTAAAGTAATGGCTAAACGACGC
* **
8843019 CGTTTCTGTGTACGATTTTTAACTTAGAAAAATTTTAG
196 CGTTTCCGTAAACGATTTTTAACTTAGAAAAATTTTAG
* * * *
8843057 AAATCAAGTATTAGTGGCGTTTTTACGTAAAACGCCAGAAAAAATGCAATTAGAGACTAACAAAA
1 AAATCAAGTATTAATAGCGTTTTTACATAAAACACCAGAAAAAATGCAATTAGAGACTAACAAAA
* *
8843122 CGGCGTCG-TTCCTCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACGCC-AGAAATGT
66 CGGCGCCGTTTCC-CTTTACAACTTTAATATTTAGTGGCATTTTTAGGAAAACGCCGA-AAATGT
*
8843185 GTAAGT-AATAACGGCGTTTGTACT-GAAAATGCAGCAAAAGGGTATTAAAGTAATGGCTAAACG
129 GGAA-TCAATAACGGCGTTTGTA-TAGAAAATGCAGCAAAAGGGTATTAAAGTAATGGCTAAACG
8843248 ACGCCGTTTCCGTAAACGATTTTTAACTTAGAAAAATTTTAG
192 ACGCCGTTTCCGTAAACGATTTTTAACTTAGAAAAATTTTAG
8843290 AA
1 AA
8843292 TTATTTATTT
Statistics
Matches: 208, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
232 5 0.02
233 201 0.97
234 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (233 bp):
AAATCAAGTATTAATAGCGTTTTTACATAAAACACCAGAAAAAATGCAATTAGAGACTAACAAAA
CGGCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCATTTTTAGGAAAACGCCGAAAATGTGG
AATCAATAACGGCGTTTGTATAGAAAATGCAGCAAAAGGGTATTAAAGTAATGGCTAAACGACGC
CGTTTCCGTAAACGATTTTTAACTTAGAAAAATTTTAG
Done.