Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 48 of 218
Found at i:14751366 original size:12 final size:12
Alignment explanation
Indices: 14751349--14751373 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14751339 AGTTTGAAAC
14751349 TGTTCATAATTT
1 TGTTCATAATTT
14751361 TGTTCATAATTT
1 TGTTCATAATTT
14751373 T
1 T
14751374 CATTATCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TGTTCATAATTT
Found at i:14751501 original size:27 final size:27
Alignment explanation
Indices: 14751463--14751520 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
14751453 AAAAGAAAAA
14751463 GAAAATTCAGGTGCCACATTAAACTTT
1 GAAAATTCAGGTGCCACATTAAACTTT
14751490 GAAAATTCAGGTGCCACATTAAACTTT
1 GAAAATTCAGGTGCCACATTAAACTTT
14751517 GAAA
1 GAAA
14751521 CTGTTATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (27 bp):
GAAAATTCAGGTGCCACATTAAACTTT
Found at i:14752543 original size:69 final size:69
Alignment explanation
Indices: 14752463--14752604 Score: 248
Period size: 69 Copynumber: 2.1 Consensus size: 69
14752453 AAATTTTATT
* *
14752463 AATAATAAATTTTATACTTTTAAAAATAATTGTAAATGTTATTTTTTAAATATTAAAACCTATAT
1 AATAATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAAAACCTATAT
14752528 TTTC
66 TTTC
*
14752532 AATAATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAACACCTATAT
1 AATAATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAAAACCTATAT
*
14752597 TTTT
66 TTTC
14752601 AATA
1 AATA
14752605 TATCACCCCA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (69 bp):
AATAATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAAAACCTATAT
TTTC
Found at i:14752773 original size:8 final size:8
Alignment explanation
Indices: 14752760--14752805 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
14752750 CATATAACTT
14752760 ACATAATA
1 ACATAATA
14752768 ACATAATA
1 ACATAATA
14752776 ACATAATA
1 ACATAATA
14752784 AC-T--T-
1 ACATAATA
14752788 ACATAATA
1 ACATAATA
14752796 ACATAATA
1 ACATAATA
14752804 AC
1 AC
14752806 TTATATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 2 0.06
5 2 0.06
7 2 0.06
8 28 0.82
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (8 bp):
ACATAATA
Found at i:14752776 original size:20 final size:20
Alignment explanation
Indices: 14752768--14752884 Score: 130
Period size: 20 Copynumber: 5.7 Consensus size: 20
14752758 TTACATAATA
14752768 ACATAATAACATAATAACTT
1 ACATAATAACATAATAACTT
14752788 ACATAATAACATAATAACTT
1 ACATAATAACATAATAACTT
* * *
14752808 ATAT-ATAAACTTGCATAACTT
1 ACATAAT-AACAT-AATAACTT
* *
14752829 ACATAATAAAACTTGCATAACTT
1 ACATAAT--AACAT-AATAACTT
14752852 ACATAATAACATAATAACTT
1 ACATAATAACATAATAACTT
14752872 ACATAAT-ACATAA
1 ACATAATAACATAA
14752885 CTTACATTAT
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
19 8 0.09
20 41 0.47
21 14 0.16
22 2 0.02
23 22 0.25
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (20 bp):
ACATAATAACATAATAACTT
Found at i:14752793 original size:12 final size:12
Alignment explanation
Indices: 14752749--14752879 Score: 60
Period size: 12 Copynumber: 11.7 Consensus size: 12
14752739 AAATTTTGTA
14752749 ACAT-ATAACTT
1 ACATAATAACTT
14752760 ACATAATAACATAAT
1 ACATAATAAC-T--T
14752775 AACATAATAACTT
1 -ACATAATAACTT
14752788 ACATAAT-A---
1 ACATAATAACTT
14752796 ACATAATAACTT
1 ACATAATAACTT
*
14752808 ATAT-ATAAACTT
1 ACATAAT-AACTT
*
14752820 GC---ATAACTT
1 ACATAATAACTT
14752829 ACATAATAAAACTT
1 ACATAAT--AACTT
*
14752843 GC---ATAACTT
1 ACATAATAACTT
14752852 ACATAAT-A---
1 ACATAATAACTT
14752860 ACATAATAACTT
1 ACATAATAACTT
14752872 ACATAATA
1 ACATAATA
14752880 CATAACTTAC
Statistics
Matches: 92, Mismatches: 6, Indels: 43
0.65 0.04 0.30
Matches are distributed among these distances:
8 14 0.15
9 14 0.15
10 2 0.02
11 10 0.11
12 32 0.35
13 2 0.02
14 6 0.07
15 2 0.02
16 10 0.11
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (12 bp):
ACATAATAACTT
Found at i:14752827 original size:21 final size:23
Alignment explanation
Indices: 14752781--14752860 Score: 98
Period size: 23 Copynumber: 3.7 Consensus size: 23
14752771 TAATAACATA
* *
14752781 ATAACTTACATAAT--AACAT-A
1 ATAACTTACATAATAAAACTTGC
*
14752801 ATAACTTATAT-AT-AAACTTGC
1 ATAACTTACATAATAAAACTTGC
14752822 ATAACTTACATAATAAAACTTGC
1 ATAACTTACATAATAAAACTTGC
14752845 ATAACTTACATAATAA
1 ATAACTTACATAATAA
14752861 CATAATAACT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
19 2 0.04
20 14 0.27
21 10 0.19
22 2 0.04
23 24 0.46
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.33
Consensus pattern (23 bp):
ATAACTTACATAATAAAACTTGC
Found at i:14752833 original size:9 final size:9
Alignment explanation
Indices: 14752815--14753074 Score: 145
Period size: 9 Copynumber: 30.7 Consensus size: 9
14752805 CTTATATATA
*
14752815 AACTTGCAT
1 AACTTACAT
14752824 AACTTACAT
1 AACTTACAT
14752833 AA--TA-A-
1 AACTTACAT
*
14752838 AACTTGCAT
1 AACTTACAT
14752847 AACTTACAT
1 AACTTACAT
*
14752856 AA-TAACATAAT
1 AACTTAC---AT
14752867 AACTTACAT
1 AACTTACAT
14752876 AA--TACAT
1 AACTTACAT
14752883 AACTTACAT
1 AACTTACAT
* *
14752892 TA--TACAC
1 AACTTACAT
14752899 AACTTACAT
1 AACTTACAT
14752908 AACTTA-ATT
1 AACTTACA-T
14752917 AA-TTA-AT
1 AACTTACAT
* *
14752924 -ATTATATAT
1 AACT-TACAT
14752933 AACTTACAT
1 AACTTACAT
14752942 AACTTAC--
1 AACTTACAT
14752949 AACTTACAT
1 AACTTACAT
14752958 AACTTA-ATT
1 AACTTACA-T
* *
14752967 ACATTATACAC
1 A-ACT-TACAT
14752978 AACTTACAT
1 AACTTACAT
*
14752987 AACATACAT
1 AACTTACAT
*
14752996 AA--TATAT
1 AACTTACAT
* * *
14753003 TACATACGT
1 AACTTACAT
14753012 AACTTACAT
1 AACTTACAT
14753021 AA--TACAT
1 AACTTACAT
14753028 AACTTACAT
1 AACTTACAT
14753037 AA--TACAT
1 AACTTACAT
*
14753044 AGCTTACAT
1 AACTTACAT
14753053 AA--TACAT
1 AACTTACAT
14753060 AACTTACAT
1 AACTTACAT
14753069 AACTTA
1 AACTTA
14753075 TATGTGCTAT
Statistics
Matches: 195, Mismatches: 25, Indels: 62
0.69 0.09 0.22
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 49 0.25
8 12 0.06
9 113 0.58
10 6 0.03
11 7 0.04
12 4 0.02
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:14752886 original size:16 final size:16
Alignment explanation
Indices: 14752844--14753070 Score: 168
Period size: 16 Copynumber: 13.9 Consensus size: 16
14752834 ATAAAACTTG
14752844 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
14752861 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
*
14752880 CATAACTTACATTATA
1 CATAACTTACATAATA
*
14752896 CACAACTTACATAACTTA
1 CATAACTTACATAA--TA
14752914 -ATTAA-TTA-ATATTATA
1 CA-TAACTTACATA--ATA
*
14752930 TATAACTTACATAACTTA
1 CATAACTTACATAA--TA
14752948 C--AACTTACAT-A-A
1 CATAACTTACATAATA
* *
14752960 CTTAA-TTACATTATA
1 CATAACTTACATAATA
*
14752975 CACAACTTACATAACATA
1 CATAACTTACAT-A-ATA
*
14752993 CATAA-TATA-TTACATA
1 CATAACT-TACATA-ATA
*
14753009 CGTAACTTACATAATA
1 CATAACTTACATAATA
14753025 CATAACTTACATAATA
1 CATAACTTACATAATA
*
14753041 CATAGCTTACATAATA
1 CATAACTTACATAATA
14753057 CATAACTTACATAA
1 CATAACTTACATAA
14753071 CTTATATGTG
Statistics
Matches: 172, Mismatches: 15, Indels: 47
0.74 0.06 0.20
Matches are distributed among these distances:
12 2 0.01
13 6 0.03
14 3 0.02
15 5 0.03
16 107 0.62
17 14 0.08
18 19 0.11
19 2 0.01
20 14 0.08
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:14754779 original size:66 final size:65
Alignment explanation
Indices: 14754671--14754841 Score: 227
Period size: 66 Copynumber: 2.6 Consensus size: 65
14754661 TGAGCAAATT
* * *
14754671 GCACAACTTAAAGCGGAGGCAGCATCGAGAGAAGCTGAGGTTCAAA-AAAGATATGAAGAACTCC
1 GCACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAG-TATGAAGAACTCC
14754735 A
65 A
*
14754736 GCTACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGGAAGTATGAAGAACTCC
1 GC-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAGAACTCC
14754801 A
65 A
* * * * * *
14754802 GCGCAGCTTAAAGTAGATGCGGCAGCGAGGGAAGCAGAGG
1 GCACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
14754842 CAGCAGCGAG
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
65 34 0.36
66 57 0.61
67 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.13
Consensus pattern (65 bp):
GCACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAGAACTCCA
Found at i:14755230 original size:43 final size:43
Alignment explanation
Indices: 14755166--14755279 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
14755156 TCTGCCAAAA
***
14755166 TTAGTGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCATGACCT
1 TTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGACCT
* **
14755209 TTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGGTCT
1 TTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGACCT
* * *
14755252 ATAGCGGCATTTTTGGGAAAAGCGCCGC
1 TTAGTGGCGTTTTTGGGAAAAGCGCCGC
14755280 AAATGTTAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
TTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGACCT
Found at i:14755856 original size:19 final size:19
Alignment explanation
Indices: 14755834--14755877 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
14755824 AAAATATCAT
*
14755834 AAAATATTTAAAATTTATA
1 AAAATAATTAAAATTTATA
*
14755853 AAAA-AATTATAATTTATA
1 AAAATAATTAAAATTTATA
14755871 AAAATAA
1 AAAATAA
14755878 AAAATATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATAATTAAAATTTATA
Found at i:14757405 original size:10 final size:10
Alignment explanation
Indices: 14757385--14757472 Score: 67
Period size: 10 Copynumber: 8.8 Consensus size: 10
14757375 TAAAACTATA
*
14757385 TAATATTTTT
1 TAATAATTTT
*
14757395 TAATAAATTT
1 TAATAATTTT
*
14757405 T-ATACTTTTT
1 TAATA-ATTTT
14757415 TAAATAATTTT
1 T-AATAATTTT
14757426 TAATAATTTT
1 TAATAATTTT
14757436 T-ATAATTTAT
1 TAATAATTT-T
*
14757446 T-TTAAATTTT
1 TAAT-AATTTT
14757456 TAA-AATTTT
1 TAATAATTTT
*
14757465 TAAAAATT
1 TAATAATT
14757473 AATTTGTTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
9 19 0.30
10 32 0.50
11 10 0.16
12 3 0.05
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (10 bp):
TAATAATTTT
Found at i:14757414 original size:21 final size:22
Alignment explanation
Indices: 14757384--14757450 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
14757374 TTAAAACTAT
14757384 ATAATATTTTTTAATAAATTTT-
1 ATAAT-TTTTTTAATAAATTTTA
* * *
14757406 ATACTTTTTTAAATAATTTTTA
1 ATAATTTTTTTAATAAATTTTA
* **
14757428 ATAATTTTTATAATTTATTTTA
1 ATAATTTTTTTAATAAATTTTA
14757450 A
1 A
14757451 ATTTTTAAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 14 0.40
22 21 0.60
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (22 bp):
ATAATTTTTTTAATAAATTTTA
Found at i:14757467 original size:9 final size:9
Alignment explanation
Indices: 14757420--14757469 Score: 55
Period size: 9 Copynumber: 5.2 Consensus size: 9
14757410 TTTTTTAAAT
14757420 AATTTTTAA
1 AATTTTTAA
14757429 TAATTTTTATA
1 -AATTTTTA-A
* *
14757440 ATTTATTTTA
1 AATT-TTTAA
14757450 AATTTTTAA
1 AATTTTTAA
14757459 AATTTTTAA
1 AATTTTTAA
14757468 AA
1 AA
14757470 ATTAATTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
9 15 0.44
10 15 0.44
11 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATTTTTAA
Found at i:14764641 original size:69 final size:68
Alignment explanation
Indices: 14764526--14764838 Score: 295
Period size: 69 Copynumber: 4.5 Consensus size: 68
14764516 GGTGTCGCGA
* * * * * * *
14764526 CTCCAAAACAGCTTGCGGACCTATGATCCAGACTGATATTGTAAAGGCTCACTGATTTAATATCA
1 CTCCAAAATAGCTCGCAGACCTACGCTCCAG-CTGATATTGTAAAGGCTCGCTGATTTAAGATCA
14764591 CAG-
65 CAGC
* * *
14764594 CTCCCAAAATAGCTCGCAGACCTACGCTCTCAGCTAATATTGTAAAGGCTTGTTGATTTAAGATC
1 CT-CCAAAATAGCTCGCAGACCTACGCTC-CAGCTGATATTGTAAAGGCTCGCTGATTTAAGATC
* *
14764659 GCAAC
64 ACAGC
* * * * * * * * **
14764664 CTTCGAAACAGCTTGCGGACCTACACTCCCAGTTGATATTGTAAAGGCTCGCGGATGCAAGATCA
1 CTCCAAAATAGCTCGCAGACCTACGCT-CCAGCTGATATTGTAAAGGCTCGCTGATTTAAGATCA
14764729 CAGC
65 CAGC
* ** * *
14764733 CTCTAAAATAGCTCGTTGACCTACGCTCCTAGCTGATATTGTAAAGGCTTGCTGATTTAAGATCG
1 CTCCAAAATAGCTCGCAGACCTACGCTCC-AGCTGATATTGTAAAGGCTCGCTGATTTAAGATCA
14764798 CAGC
65 CAGC
** *
14764802 CTCTGAAATAGCTCGCAGACCTACGTTCCTAGCTGAT
1 CTCCAAAATAGCTCGCAGACCTACGCTCC-AGCTGAT
14764839 GATTAAAGGT
Statistics
Matches: 195, Mismatches: 45, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
68 4 0.02
69 185 0.95
70 6 0.03
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (68 bp):
CTCCAAAATAGCTCGCAGACCTACGCTCCAGCTGATATTGTAAAGGCTCGCTGATTTAAGATCAC
AGC
Found at i:14764779 original size:138 final size:137
Alignment explanation
Indices: 14764531--14764825 Score: 364
Period size: 138 Copynumber: 2.1 Consensus size: 137
14764521 CGCGACTCCA
* * ** *
14764531 AAACAGCTTGCGGACCTATGATCCAGACTGATATTGTAAAGGCTCACTGATTTAATATCACAGCT
1 AAACAGCTTGCGGACCTA-CATCCAGACTGATATTGTAAAGGCTCACGGATGCAAGATCACAGCT
*
14764596 CCCAAAATAGCTCGCAGACCTACGCTCTCAGCTAATATTGTAAAGGCTTGTTGATTTAAGATCGC
65 CCCAAAATAGCTCGCAGACCTACGCTCTCAGCTAATATTGTAAAGGCTTGCTGATTTAAGATCGC
14764661 AACCT-TCG
130 AACCTCT-G
* *
14764669 AAACAGCTTGCGGACCTACACTCCCAG-TTGATATTGTAAAGGCTCGCGGATGCAAGATCACAGC
1 AAACAGCTTGCGGACCTACA-T-CCAGACTGATATTGTAAAGGCTCACGGATGCAAGATCACAGC
* ** *
14764733 -CTCTAAAATAGCTCGTTGACCTACGCTC-CTAGCTGATATTGTAAAGGCTTGCTGATTTAAGAT
64 TC-CCAAAATAGCTCGCAGACCTACGCTCTC-AGCTAATATTGTAAAGGCTTGCTGATTTAAGAT
*
14764796 CGCAGCCTCTG
127 CGCAACCTCTG
* * *
14764807 AAATAGCTCGCAGACCTAC
1 AAACAGCTTGCGGACCTAC
14764826 GTTCCTAGCT
Statistics
Matches: 136, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
137 3 0.02
138 128 0.94
139 5 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (137 bp):
AAACAGCTTGCGGACCTACATCCAGACTGATATTGTAAAGGCTCACGGATGCAAGATCACAGCTC
CCAAAATAGCTCGCAGACCTACGCTCTCAGCTAATATTGTAAAGGCTTGCTGATTTAAGATCGCA
ACCTCTG
Found at i:14764907 original size:37 final size:37
Alignment explanation
Indices: 14764849--14764947 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
14764839 GATTAAAGGT
* * *
14764849 TAGCTGAGTTG-AGCTCACAACCTCCAATTATTTGGGC
1 TAGCTGA-TTGAAGATCGCAACCTCCAATTATTTGAGC
* * *
14764886 TCGCTGATTTAAGATCGCAACCTCCAATTATTTGAGT
1 TAGCTGATTGAAGATCGCAACCTCCAATTATTTGAGC
14764923 TAGCTGATTGAAGATCGCAA-CTCCA
1 TAGCTGATTGAAGATCGCAACCTCCA
14764948 CACAACTCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 7 0.13
37 46 0.87
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (37 bp):
TAGCTGATTGAAGATCGCAACCTCCAATTATTTGAGC
Found at i:14765288 original size:3 final size:3
Alignment explanation
Indices: 14765280--14765326 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
14765270 TAAAGAGGGG
*
14765280 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT TTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
14765327 ATATATTCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:14766789 original size:48 final size:49
Alignment explanation
Indices: 14766736--14766989 Score: 309
Period size: 48 Copynumber: 5.3 Consensus size: 49
14766726 TAGTAACAAC
* * * *
14766736 ATTTGGATAGCATTGATTTG-TACAAAAATGGACATCATTTAAGCACCA
1 ATTTGGACAGCATTAATATGCTACAAAAATGGACAGCATTTAAGCACCA
* * * * * *
14766784 ATTTGGATAGCATTAATATACTA-AAAAATGGGCAGCAATTAAGAATCA
1 ATTTGGACAGCATTAATATGCTACAAAAATGGACAGCATTTAAGCACCA
* ** *
14766832 ATTTGGACAGCATTAATATGCTAAAAAAATAAACAGCATTTAAGCACTA
1 ATTTGGACAGCATTAATATGCTACAAAAATGGACAGCATTTAAGCACCA
* *
14766881 ATTTGAACAGCATTAATATGCT-CAAAAATGGACAGCATTTAAGCACTA
1 ATTTGGACAGCATTAATATGCTACAAAAATGGACAGCATTTAAGCACCA
* * *
14766929 ATTTGGATAGCATTAATATGCT-CAAAAATGGACAACAATTAAGCACCA
1 ATTTGGACAGCATTAATATGCTACAAAAATGGACAGCATTTAAGCACCA
14766977 ATTTGGACAGCAT
1 ATTTGGACAGCAT
14766990 CTTATCATCA
Statistics
Matches: 177, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
48 136 0.77
49 41 0.23
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (49 bp):
ATTTGGACAGCATTAATATGCTACAAAAATGGACAGCATTTAAGCACCA
Found at i:14766884 original size:97 final size:97
Alignment explanation
Indices: 14766736--14766989 Score: 325
Period size: 97 Copynumber: 2.6 Consensus size: 97
14766726 TAGTAACAAC
* * * *
14766736 ATTTGGATAGCATTGATTTG-TACAAAAATGGACATCATTTAAGCACCAATTTGGATAGCATTAA
1 ATTTGGATAGCATTAATATGCTACAAAAATGGACAACATTTAAGCACCAATTTGGACAGCATTAA
*
14766800 TATACTAAAAAATGGGCAGCAATTAAGAA-TCA
66 TATACTAAAAAATGGACAGCAATTAAGAACT-A
* * ** * * *
14766832 ATTTGGACAGCATTAATATGCTAAAAAAATAAACAGCATTTAAGCACTAATTTGAACAGCATTAA
1 ATTTGGATAGCATTAATATGCTACAAAAATGGACAACATTTAAGCACCAATTTGGACAGCATTAA
* * * *
14766897 TATGCTCAAAAATGGACAGCATTTAAGCACTA
66 TATACTAAAAAATGGACAGCAATTAAGAACTA
*
14766929 ATTTGGATAGCATTAATATGCT-CAAAAATGGACAACAATTAAGCACCAATTTGGACAGCAT
1 ATTTGGATAGCATTAATATGCTACAAAAATGGACAACATTTAAGCACCAATTTGGACAGCAT
14766990 CTTATCATCA
Statistics
Matches: 133, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
96 49 0.37
97 83 0.62
98 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (97 bp):
ATTTGGATAGCATTAATATGCTACAAAAATGGACAACATTTAAGCACCAATTTGGACAGCATTAA
TATACTAAAAAATGGACAGCAATTAAGAACTA
Found at i:14766893 original size:23 final size:23
Alignment explanation
Indices: 14766863--14766942 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
14766853 TAAAAAAATA
14766863 AACAGCATTTAAGCACTAATTTG
1 AACAGCATTTAAGCACTAATTTG
* * * **
14766886 AACAGCATTAATATGCTCAAAAATG
1 AACAGCATT--TAAGCACTAATTTG
*
14766911 GACAGCATTTAAGCACTAATTTG
1 AACAGCATTTAAGCACTAATTTG
* *
14766934 GATAGCATT
1 AACAGCATT
14766943 AATATGCTCA
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
23 26 0.60
25 17 0.40
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (23 bp):
AACAGCATTTAAGCACTAATTTG
Found at i:14767649 original size:42 final size:43
Alignment explanation
Indices: 14767531--14767650 Score: 154
Period size: 42 Copynumber: 2.8 Consensus size: 43
14767521 AGCTTGTACA
* * ** *
14767531 ATGCC-ATATCCCAGATATAGTCTTACATGTTATAATATATCG
1 ATGCCAATGTCCCAGATATGGTCTTACATGAAATCATATATCG
* *
14767573 ATGCCACTGTCCCAGATAGGGTCTTACATGAAATCATATA-CG
1 ATGCCAATGTCCCAGATATGGTCTTACATGAAATCATATATCG
*
14767615 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
1 ATGCCAATGTCCCAGATATGGTCTTACATGAAATCA
14767651 CACCTCAGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 40 0.60
43 27 0.40
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATATGGTCTTACATGAAATCATATATCG
Found at i:14770959 original size:34 final size:33
Alignment explanation
Indices: 14770914--14770977 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
14770904 CCTTTTCCCC
*
14770914 TATTTTTAATAATATTCATTATTTTTCACTTTT
1 TATTTTTAATAATATTCATTACTTTTCACTTTT
* *
14770947 TATTTTGTAATAATTTTTATTACTTTTCACT
1 TATTTT-TAATAATATTCATTACTTTTCACT
14770978 CACAGAGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 6 0.22
34 21 0.78
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (33 bp):
TATTTTTAATAATATTCATTACTTTTCACTTTT
Found at i:14772561 original size:14 final size:15
Alignment explanation
Indices: 14772539--14772615 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14772529 CAATCAAACA
14772539 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
14772553 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
14772568 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
14772588 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
14772602 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
14772616 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:14772580 original size:20 final size:20
Alignment explanation
Indices: 14772555--14772594 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14772545 AATATTTTCC
*
14772555 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
14772575 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
14772595 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:14772600 original size:34 final size:35
Alignment explanation
Indices: 14772543--14772609 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14772533 CAAACACCAG
*
14772543 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
14772578 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
14772610 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:14773422 original size:3 final size:3
Alignment explanation
Indices: 14773414--14773520 Score: 128
Period size: 3 Copynumber: 36.3 Consensus size: 3
14773404 AGTTAACAGT
*
14773414 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA ATA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* * * * * * *
14773462 AGA AGA AGA AGA AGA AG- AGG AGG AGG AGG AGG AGG AGG AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
14773509 AGA AG- AGA AGA A
1 AGA AGA AGA AGA A
14773521 ATGGAGATGC
Statistics
Matches: 99, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
2 4 0.04
3 95 0.96
ACGTcount: A:0.60, C:0.00, G:0.39, T:0.01
Consensus pattern (3 bp):
AGA
Found at i:14773879 original size:3 final size:3
Alignment explanation
Indices: 14773871--14773899 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14773861 TCTCCTTATT
14773871 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
14773900 TTATTGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:14775644 original size:2 final size:2
Alignment explanation
Indices: 14775637--14775661 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14775627 GAAAGAAATA
14775637 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14775662 GAAAGATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14776047 original size:3 final size:3
Alignment explanation
Indices: 14776041--14776094 Score: 58
Period size: 3 Copynumber: 18.7 Consensus size: 3
14776031 TACAAAGCGG
* * * *
14776041 TAA TAA TAA TAA TAA TAA TAA TAA TGA -AA T-T TAA TTA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14776087 TAA TAA TA
1 TAA TAA TA
14776095 GTAACAAAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:14776153 original size:12 final size:12
Alignment explanation
Indices: 14776136--14776164 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14776126 ATCAAGACTA
14776136 AAATTTAAGAGC
1 AAATTTAAGAGC
14776148 AAATTTAAGAGC
1 AAATTTAAGAGC
14776160 AAATT
1 AAATT
14776165 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (12 bp):
AAATTTAAGAGC
Found at i:14776911 original size:15 final size:16
Alignment explanation
Indices: 14776875--14776911 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14776865 GGCCAGAATT
14776875 ATAGAAA-AAAATAAA
1 ATAGAAATAAAATAAA
14776890 ATA-AAATAAAATAAA
1 ATAGAAATAAAATAAA
14776905 A-AGAAAT
1 ATAGAAAT
14776912 CCTCCAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (16 bp):
ATAGAAATAAAATAAA
Found at i:14782401 original size:19 final size:19
Alignment explanation
Indices: 14782377--14782466 Score: 162
Period size: 19 Copynumber: 4.7 Consensus size: 19
14782367 TCATATATTT
14782377 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
14782396 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
14782415 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
14782434 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
14782453 TAAGATTGCATATC
1 TAAGATTGCATATC
14782467 CTTGAAGATT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:14782426 original size:38 final size:38
Alignment explanation
Indices: 14782377--14782466 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
14782367 TCATATATTT
14782377 TAAGATTGCATATCATATCTAAGATTACATATCATATC
1 TAAGATTGCATATCATATCTAAGATTACATATCATATC
14782415 TAAGATTGCATATCATATCTAAGATTACATATCATATC
1 TAAGATTGCATATCATATCTAAGATTACATATCATATC
14782453 TAAGATTGCATATC
1 TAAGATTGCATATC
14782467 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (38 bp):
TAAGATTGCATATCATATCTAAGATTACATATCATATC
Found at i:14783744 original size:24 final size:25
Alignment explanation
Indices: 14783718--14783800 Score: 73
Period size: 24 Copynumber: 3.4 Consensus size: 25
14783708 ATGGCTATCC
*
14783718 GGAGCTTCCT-ATTAATGGCTCTTC
1 GGAGCTTCCTAATTAATGGCTCTTA
* ** * *
14783742 GGAGC-TACTCGTTATTGGCTCGTA
1 GGAGCTTCCTAATTAATGGCTCTTA
*
14783766 TGAGCTTCCTAATT-ATGGCTCTTA
1 GGAGCTTCCTAATTAATGGCTCTTA
*
14783790 TGAGCTTCCTA
1 GGAGCTTCCTA
14783801 TTATATAGCC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
23 3 0.07
24 38 0.83
25 5 0.11
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (25 bp):
GGAGCTTCCTAATTAATGGCTCTTA
Found at i:14783860 original size:25 final size:25
Alignment explanation
Indices: 14783765--14783860 Score: 61
Period size: 25 Copynumber: 3.9 Consensus size: 25
14783755 ATTGGCTCGT
* * **
14783765 ATGAGCTTCCTAAT-TATGGCTCTT
1 ATGAGCTTCCCATTATATGGCTCAC
* * *
14783789 ATGAGCTTCCTATTATATAGC-CAGG
1 ATGAGCTTCCCATTATATGGCTCA-C
* * * * *
14783814 ATAAGCTTCTCGTTACAGGGCTCAC
1 ATGAGCTTCCCATTATATGGCTCAC
14783839 ATGAGCTTCCCATTATATGGCT
1 ATGAGCTTCCCATTATATGGCT
14783861 TGAGAGAAGG
Statistics
Matches: 52, Mismatches: 17, Indels: 5
0.70 0.23 0.07
Matches are distributed among these distances:
24 14 0.27
25 36 0.69
26 2 0.04
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCCATTATATGGCTCAC
Found at i:14808532 original size:38 final size:38
Alignment explanation
Indices: 14808485--14808561 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
14808475 ACTCTTGTAT
* *
14808485 TGGGTTCCATTTTGGTAAAGTAGTTGCTCTTTTTTCCC
1 TGGGATCCATTTTGGTAAAGTAATTGCTCTTTTTTCCC
*
14808523 TGGGATCCATTTTGGTAAAGTAATTGCTTTTTTTTCCC
1 TGGGATCCATTTTGGTAAAGTAATTGCTCTTTTTTCCC
14808561 T
1 T
14808562 TTCCTCAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.16, C:0.17, G:0.19, T:0.48
Consensus pattern (38 bp):
TGGGATCCATTTTGGTAAAGTAATTGCTCTTTTTTCCC
Found at i:14810666 original size:23 final size:23
Alignment explanation
Indices: 14810621--14810665 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
14810611 CAACGGAAAA
*
14810621 AATTTAACTACAATTAATATTTT
1 AATTTAACTACAAATAATATTTT
*
14810644 AATTTAACTA-AAATAATTTTTT
1 AATTTAACTACAAATAATATTTT
14810666 TTTTACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (23 bp):
AATTTAACTACAAATAATATTTT
Found at i:14813316 original size:25 final size:24
Alignment explanation
Indices: 14813288--14813334 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14813278 AAGTGTATAA
* *
14813288 TATATTCTAAATAATACAAGTATTC
1 TATATTCCAAA-AAAACAAGTATTC
14813313 TATATTCCAAAAAAACAAGTAT
1 TATATTCCAAAAAAACAAGTAT
14813335 ACACCTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (24 bp):
TATATTCCAAAAAAACAAGTATTC
Found at i:14816434 original size:21 final size:21
Alignment explanation
Indices: 14816421--14816467 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
14816411 AAATGTAAAT
14816421 AAATATATAAAAAATTCAGAA
1 AAATATATAAAAAATTCAGAA
*
14816442 AAATATATATAAAA-TCTAGAA
1 AAATATATAAAAAATTC-AGAA
14816463 AAATA
1 AAATA
14816468 AAATATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (21 bp):
AAATATATAAAAAATTCAGAA
Found at i:14816455 original size:22 final size:22
Alignment explanation
Indices: 14816405--14816476 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 22
14816395 ATATTAAAAA
14816405 ATATAAAAATGT-A-AATAAATAT
1 ATATAAAAAT-TCAGAA-AAATAT
14816427 ATA-AAAAATTCAGAAAAATAT
1 ATATAAAAATTCAGAAAAATAT
*
14816448 ATAT-AAAA-TCTAGAAAAATAAA
1 ATATAAAAATTC-AGAAAAAT-AT
14816470 ATATAAA
1 ATATAAA
14816477 TTTTGAAAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
20 3 0.07
21 28 0.65
22 10 0.23
23 2 0.05
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.26
Consensus pattern (22 bp):
ATATAAAAATTCAGAAAAATAT
Found at i:14816575 original size:10 final size:11
Alignment explanation
Indices: 14816560--14816606 Score: 64
Period size: 10 Copynumber: 4.5 Consensus size: 11
14816550 ATATTATTAC
14816560 AAAAAA-TGTA
1 AAAAAATTGTA
14816570 AAAAAATTGT-
1 AAAAAATTGTA
*
14816580 AAAAAA-TATA
1 AAAAAATTGTA
14816590 AAAAAATTGTA
1 AAAAAATTGTA
14816601 AAAAAA
1 AAAAAA
14816607 ATATTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 2 0.06
10 18 0.56
11 12 0.38
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.21
Consensus pattern (11 bp):
AAAAAATTGTA
Found at i:14816585 original size:20 final size:20
Alignment explanation
Indices: 14816560--14816605 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
14816550 ATATTATTAC
*
14816560 AAAAAATGTAAAAAAATTGT
1 AAAAAATATAAAAAAATTGT
14816580 AAAAAATATAAAAAAATTGT
1 AAAAAATATAAAAAAATTGT
14816600 AAAAAA
1 AAAAAA
14816606 AATATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.22
Consensus pattern (20 bp):
AAAAAATATAAAAAAATTGT
Found at i:14816618 original size:13 final size:13
Alignment explanation
Indices: 14816602--14816661 Score: 68
Period size: 13 Copynumber: 4.5 Consensus size: 13
14816592 AAAATTGTAA
14816602 AAAAAATATTTTT
1 AAAAAATATTTTT
14816615 AAAAAATATTTTT
1 AAAAAATATTTTT
**
14816628 AAAAAAT-TTTAAA
1 AAAAAATATTT-TT
14816641 AATAAAATATTTTT
1 AA-AAAATATTTTT
*
14816655 ATAAAAT
1 AAAAAAT
14816662 TCTAAAACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
12 3 0.08
13 27 0.69
14 6 0.15
15 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AAAAAATATTTTT
Found at i:14816647 original size:27 final size:27
Alignment explanation
Indices: 14816617--14816668 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
14816607 ATATTTTTAA
*
14816617 AAAATATTTTTAAAAAATTTTAAAAAT
1 AAAATATTTTTAAAAAATTCTAAAAAT
*
14816644 AAAATATTTTTATAAAATTCTAAAA
1 AAAATATTTTTAAAAAATTCTAAAA
14816669 CATACAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
AAAATATTTTTAAAAAATTCTAAAAAT
Found at i:14816962 original size:28 final size:26
Alignment explanation
Indices: 14816930--14816981 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
14816920 ATATTTAAAT
14816930 ATTTAAAATTATAATTTTTTAGTTTTTA
1 ATTT-AAA-TATAATTTTTTAGTTTTTA
* *
14816958 ATTTAAATGTAATTTTTTTGTTTT
1 ATTTAAATATAATTTTTTAGTTTT
14816982 AAATAAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 3 0.14
28 4 0.18
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATTTAAATATAATTTTTTAGTTTTTA
Found at i:14820042 original size:83 final size:83
Alignment explanation
Indices: 14819898--14820143 Score: 429
Period size: 83 Copynumber: 3.0 Consensus size: 83
14819888 AAATCTAATA
* *
14819898 TGAAATTGTTAGAGAGAAAGTTTCTCTCTTGTTTTCGAGGGGAGCCTATTCACTGAAACCCTATT
1 TGAAGTTGTTTGAGAGAAAGTTTCTCTCTTGTTTTCGAGGGGAGCCTATTCACTGAAACCCTATT
14819963 AGGGCCACAATAGCAATT
66 AGGGCCACAATAGCAATT
* *
14819981 TGAAGTTGTTTGAGAGAAAGTTTCTCTCTTGTTTTCAAGGGAAGCCTATTCACTGAAACCCTATT
1 TGAAGTTGTTTGAGAGAAAGTTTCTCTCTTGTTTTCGAGGGGAGCCTATTCACTGAAACCCTATT
14820046 AGGGCCACAATAGCAATT
66 AGGGCCACAATAGCAATT
* *
14820064 TGAAGTTGTTTGAGAGAGAGTTTCTCTCTTGTTTTCGAGGGGAGCCTATTCATTGAAACCCTATT
1 TGAAGTTGTTTGAGAGAAAGTTTCTCTCTTGTTTTCGAGGGGAGCCTATTCACTGAAACCCTATT
*
14820129 AGGGTCACAATAGCA
66 AGGGCCACAATAGCA
14820144 TTTTTTGCAT
Statistics
Matches: 154, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 154 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (83 bp):
TGAAGTTGTTTGAGAGAAAGTTTCTCTCTTGTTTTCGAGGGGAGCCTATTCACTGAAACCCTATT
AGGGCCACAATAGCAATT
Found at i:14820413 original size:19 final size:21
Alignment explanation
Indices: 14820373--14820418 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
14820363 ATATATTTTT
14820373 TTATTTTTAATCAAATATATA
1 TTATTTTTAATCAAATATATA
14820394 TTATTTTTAATCAAATATATA
1 TTATTTTTAATCAAATATATA
14820415 TTAT
1 TTAT
14820419 ATATATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (21 bp):
TTATTTTTAATCAAATATATA
Found at i:14820419 original size:26 final size:26
Alignment explanation
Indices: 14820359--14820426 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 26
14820349 ATTATATATT
* *
14820359 AAATATATATTTTTTTATTTTTAATC
1 AAATATATATTATATTATTTTTAATC
14820385 --A-A-ATA-TATATTATTTTTAATC
1 AAATATATATTATATTATTTTTAATC
14820406 AAATATATATTATATATATTT
1 AAATATATATTATAT-TATTT
14820427 AATATGGGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
21 14 0.41
22 3 0.09
23 2 0.06
24 2 0.06
25 3 0.09
26 5 0.15
27 5 0.15
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (26 bp):
AAATATATATTATATTATTTTTAATC
Found at i:14821096 original size:15 final size:15
Alignment explanation
Indices: 14821076--14821106 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14821066 GGTGCCCTTG
14821076 TCTTGATAAATCTCA
1 TCTTGATAAATCTCA
14821091 TCTTGATAAATCTCA
1 TCTTGATAAATCTCA
14821106 T
1 T
14821107 ATATATATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (15 bp):
TCTTGATAAATCTCA
Found at i:14821563 original size:17 final size:16
Alignment explanation
Indices: 14821497--14821552 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
14821487 AAACTTTTTT
* *
14821497 CCCAAATTTTAAAATC
1 CCCAAATTATGAAATC
* * *
14821513 CCCAACTTGTTAAATTC
1 CCCAAATTATGAAA-TC
14821530 CCCAAATTATGAAATC
1 CCCAAATTATGAAATC
14821546 CCCAAAT
1 CCCAAAT
14821553 CTATAACATC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
16 20 0.61
17 13 0.39
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.29
Consensus pattern (16 bp):
CCCAAATTATGAAATC
Found at i:14821620 original size:16 final size:16
Alignment explanation
Indices: 14821577--14821621 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
14821567 ATTTTTGTTG
14821577 AATCCTTAAAATCTTGA
1 AATCCTT-AAATCTTGA
**
14821594 AATCCCCAAATCTTGA
1 AATCCTTAAATCTTGA
14821610 AATCCTTAAATC
1 AATCCTTAAATC
14821622 GTTAGCATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.31
Consensus pattern (16 bp):
AATCCTTAAATCTTGA
Found at i:14822450 original size:33 final size:33
Alignment explanation
Indices: 14822413--14822481 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
14822403 TGTTGACTGG
*
14822413 TGGGGAGGGTGATGTTGAAGGGGTAGAA-GTTGA
1 TGGGGAGGGTGATGATGAAGGGGTAGAATG-TGA
*
14822446 TGGGGAGGGTGATGATGGAGGGGTAGAATGTGA
1 TGGGGAGGGTGATGATGAAGGGGTAGAATGTGA
14822479 TGG
1 TGG
14822482 TGAAGGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.54, T:0.23
Consensus pattern (33 bp):
TGGGGAGGGTGATGATGAAGGGGTAGAATGTGA
Found at i:14825615 original size:16 final size:16
Alignment explanation
Indices: 14825585--14825615 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14825575 TGGTATAGCA
14825585 TGAATGATGTATAGGG
1 TGAATGATGTATAGGG
*
14825601 TGAATGGTGTATAGG
1 TGAATGATGTATAGG
14825616 CTAATCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.39, T:0.32
Consensus pattern (16 bp):
TGAATGATGTATAGGG
Found at i:14826802 original size:17 final size:16
Alignment explanation
Indices: 14826773--14826818 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
14826763 GGATGTTATA
*
14826773 GATTTGGGGATTTCAC
1 GATTTGGGAATTTCAC
*
14826789 GATTTGGAGAATTTGAC
1 GATTTGG-GAATTTCAC
*
14826806 GAGTTGGGAATTT
1 GATTTGGGAATTT
14826819 TAAAATTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.37
Consensus pattern (16 bp):
GATTTGGGAATTTCAC
Found at i:14832477 original size:19 final size:19
Alignment explanation
Indices: 14832455--14832495 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14832445 AGGGTTAGAT
14832455 TTTTAATTAAAAATTAGGG
1 TTTTAATTAAAAATTAGGG
** *
14832474 TTTTTGTTAAGAATTAGGG
1 TTTTAATTAAAAATTAGGG
14832493 TTT
1 TTT
14832496 AGGGTTTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (19 bp):
TTTTAATTAAAAATTAGGG
Found at i:14834412 original size:22 final size:22
Alignment explanation
Indices: 14834387--14834428 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
14834377 TAAGTTGGAG
*
14834387 CCAAAGCAGAAGTAGAAAGTAA
1 CCAAAGCAGAAGCAGAAAGTAA
14834409 CCAAAGCAGAAGCAGAAAGT
1 CCAAAGCAGAAGCAGAAAGT
14834429 CTTACTACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.17, G:0.24, T:0.07
Consensus pattern (22 bp):
CCAAAGCAGAAGCAGAAAGTAA
Found at i:14840775 original size:19 final size:19
Alignment explanation
Indices: 14840734--14840775 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
14840724 TTATATTTTC
*
14840734 TTTTTTCAATTTTATAATT
1 TTTTTTCAATTTTATAATA
*
14840753 TTTTTTCTATTCTTA-AATA
1 TTTTTTCAATT-TTATAATA
14840772 TTTT
1 TTTT
14840776 GTAAATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTCAATTTTATAATA
Found at i:14844368 original size:24 final size:23
Alignment explanation
Indices: 14844250--14844370 Score: 70
Period size: 24 Copynumber: 5.2 Consensus size: 23
14844240 AATAGATTGT
* *
14844250 TTGTTGTTTTAAATTGATTCTTTCC
1 TTGTT-TTTTAAATTGATTCATT-A
** *
14844275 TT-TTTTTTAAATCAATTCATTG
1 TTGTTTTTTAAATTGATTCATTA
*
14844297 TTGTTATTTTAAACCT-ATT-ATT-
1 TTGTT-TTTTAAA-TTGATTCATTA
* * * * *
14844319 TTCTTCTTTGAATCGATTCATGA
1 TTGTTTTTTAAATTGATTCATTA
14844342 TTGTTGTTTTAAATTGATTCATTA
1 TTGTT-TTTTAAATTGATTCATTA
14844366 TTGTT
1 TTGTT
14844371 AGAATTGATT
Statistics
Matches: 72, Mismatches: 17, Indels: 15
0.69 0.16 0.14
Matches are distributed among these distances:
21 8 0.11
22 8 0.11
23 23 0.32
24 31 0.43
25 2 0.03
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.58
Consensus pattern (23 bp):
TTGTTTTTTAAATTGATTCATTA
Found at i:14844389 original size:20 final size:19
Alignment explanation
Indices: 14844345--14844395 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
14844335 TTCATGATTG
14844345 TTGTT-TTAAATTGATTCA
1 TTGTTGTTAAATTGATTCA
* *
14844363 TTATTGTTAGAATTGATTCT
1 TTGTTGTTA-AATTGATTCA
*
14844383 TTGTTGTTTAATT
1 TTGTTGTTAAATT
14844396 CAAGCTCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 4 0.15
19 7 0.26
20 16 0.59
ACGTcount: A:0.24, C:0.04, G:0.14, T:0.59
Consensus pattern (19 bp):
TTGTTGTTAAATTGATTCA
Found at i:14846368 original size:4 final size:4
Alignment explanation
Indices: 14846361--14846412 Score: 52
Period size: 4 Copynumber: 12.8 Consensus size: 4
14846351 GAATAAATAA
* * *
14846361 AAAG AAAG AAAG ATAG AAACG AAAC AAA- AAGAA AAAG AAAG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAA-G AAAG AAAG AA-AG AAAG AAAG AAAG AAAG
14846410 AAA
1 AAA
14846413 AGAGAAAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 2 0.05
4 33 0.80
5 6 0.15
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.02
Consensus pattern (4 bp):
AAAG
Found at i:14846437 original size:20 final size:20
Alignment explanation
Indices: 14846388--14846440 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
14846378 AACGAAACAA
14846388 AAAGAAAA-AGAAA-GAAAG
1 AAAGAAAAGAGAAAGGAAAG
*
14846406 AAAGAAAAGAGAAAGGAAGG
1 AAAGAAAAGAGAAAGGAAAG
* *
14846426 AAAGGAAGGAGAAAG
1 AAAGAAAAGAGAAAG
14846441 CCACAGCCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 17 0.57
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (20 bp):
AAAGAAAAGAGAAAGGAAAG
Found at i:14847129 original size:24 final size:24
Alignment explanation
Indices: 14847102--14847148 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14847092 ATTGAAATAG
14847102 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
14847126 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
14847149 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:14847397 original size:37 final size:40
Alignment explanation
Indices: 14847307--14847445 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
14847297 GACTTTGAGT
* *
14847307 CGATGAGACACTTGGTGTCAATTTACTACTTCAGATTAATC
1 CGATGAGACACTGGGTGCCAATTTA-TACTTCAGATTAATC
* * *
14847348 CGATGAGGCACTGGGTGCCAA-TT-TACTTCGGTTTAA-C
1 CGATGAGACACTGGGTGCCAATTTATACTTCAGATTAATC
* * *
14847385 TGATGAGACACTGGGTGTCAAATTATTACTTC-GAATT-ATC
1 CGATGAGACACTGGGTGCCAATTTA-TACTTCAG-ATTAATC
* * *
14847425 CGATTAGGCACTAGGTGCCAA
1 CGATGAGACACTGGGTGCCAA
14847446 ACTGGTGTGT
Statistics
Matches: 79, Mismatches: 14, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
37 19 0.24
38 13 0.16
39 2 0.03
40 27 0.34
41 18 0.23
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGCCAATTTATACTTCAGATTAATC
Found at i:14855184 original size:106 final size:98
Alignment explanation
Indices: 14855047--14855246 Score: 274
Period size: 106 Copynumber: 2.0 Consensus size: 98
14855037 ATTTTTATAA
* * * * *
14855047 ATAGGAGCCAAATTTCATTTGCTTGATACACTAGAAAAACACATCAAAAGTTTTTTTTCTATTCT
1 ATAGGAGCCAAATTTCATTTGCCTGACACACTACAAAAACACATAAAAAGTTTCTTTT-TATTCT
14855112 CGCACAATCTTTTATATTCCTAGATTGTTCTATAAAGTTTT
65 ----C-A--TTTTATATTCCTAGATTGTTCTATAAAGTTTT
*
14855153 ATAGGAGCCAAATTTCATTTGCCTGGCACACTACAAAAACACATAAAAAGTTTCTTTTTATTCTC
1 ATAGGAGCCAAATTTCATTTGCCTGACACACTACAAAAACACATAAAAAGTTTCTTTTTATTCTC
14855218 ATTTTATATTCCTAGATTGTTCTATAAAG
66 ATTTTATATTCCTAGATTGTTCTATAAAG
14855247 AATTACTGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
98 28 0.32
100 1 0.01
101 1 0.01
105 6 0.07
106 52 0.59
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.39
Consensus pattern (98 bp):
ATAGGAGCCAAATTTCATTTGCCTGACACACTACAAAAACACATAAAAAGTTTCTTTTTATTCTC
ATTTTATATTCCTAGATTGTTCTATAAAGTTTT
Found at i:14858063 original size:114 final size:114
Alignment explanation
Indices: 14857882--14858094 Score: 381
Period size: 114 Copynumber: 1.9 Consensus size: 114
14857872 TAATGTAGTT
* * *
14857882 GAAAAGTCCCTACATCATTTCCAATTAGTAGAATGTCATCGACATATCGAATGAGAAAGACCATC
1 GAAAAGTCCCTACATCATTCCCAATTAGTAGAATGTCATCGACATATAGAACGAGAAAGACCATC
*
14857947 TTTCCATCCCCTAAGCATTTGTAAACACAAGGTTAACCACAAATTAATC
66 TTTCCATCCCCTAAACATTTGTAAACACAAGGTTAACCACAAATTAATC
14857996 GAAAAGTCCCTACATCATTCCCAATTAGTAGAATGTCATCGACATATAGAACGAGAAAGACCATC
1 GAAAAGTCCCTACATCATTCCCAATTAGTAGAATGTCATCGACATATAGAACGAGAAAGACCATC
*
14858061 TTTTCATCCCCTAAACATTTGTAAACACAAGGTT
66 TTTCCATCCCCTAAACATTTGTAAACACAAGGTT
14858095 CATCTCTTTT
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 94 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (114 bp):
GAAAAGTCCCTACATCATTCCCAATTAGTAGAATGTCATCGACATATAGAACGAGAAAGACCATC
TTTCCATCCCCTAAACATTTGTAAACACAAGGTTAACCACAAATTAATC
Found at i:14865743 original size:41 final size:41
Alignment explanation
Indices: 14865686--14865829 Score: 207
Period size: 41 Copynumber: 3.5 Consensus size: 41
14865676 GAAGTAATCT
* * *
14865686 AGACATAATGTCTAGCAGGCTTGATGCCGGTAAAACATACC
1 AGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATACC
*
14865727 AGACATTACGTCTAGCAGGCTTGATACCGGTGAAACATACC
1 AGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATACC
* * *
14865768 ATACTTTACGTCTAGCAGGCTTGATGCCGGTGAAACATATC
1 AGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATACC
* *
14865809 AGACTTTATGTCTAGCAGGCT
1 AGACATTACGTCTAGCAGGCT
14865830 AAGTGCTGAT
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 93 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (41 bp):
AGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATACC
Found at i:14867944 original size:26 final size:26
Alignment explanation
Indices: 14867897--14867960 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
14867887 GAGAATTTTC
14867897 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACCAGGGGTAAAATCA
* * *
14867923 TTAAAATTTTATC-GGGGATAAAATCG
1 TCAAAATTTTACCAGGGG-TAAAATCA
14867949 TCAAAATTTTAC
1 TCAAAATTTTAC
14867961 TGGAGTAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 4 0.12
26 28 0.88
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCAGGGGTAAAATCA
Found at i:14872786 original size:22 final size:21
Alignment explanation
Indices: 14872757--14872797 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14872747 TATAAATAAT
**
14872757 AAATATAATATTAACAACCAC
1 AAATATAATAGCAACAACCAC
14872778 AAATGATAATAGCAACAACC
1 AAAT-ATAATAGCAACAACC
14872798 TCAACAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.20
Consensus pattern (21 bp):
AAATATAATAGCAACAACCAC
Found at i:14875462 original size:15 final size:15
Alignment explanation
Indices: 14875442--14875470 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14875432 CGAAACAAGA
14875442 GATGTTGCTATTGCT
1 GATGTTGCTATTGCT
14875457 GATGTTGCTATTGC
1 GATGTTGCTATTGC
14875471 AAGAAGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.28, T:0.45
Consensus pattern (15 bp):
GATGTTGCTATTGCT
Found at i:14878531 original size:39 final size:39
Alignment explanation
Indices: 14878477--14878555 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
14878467 AGAAGAACTA
14878477 AGCTAAAAGTACTAAAAGAGATAGAGATAGATGTGATTG
1 AGCTAAAAGTACTAAAAGAGATAGAGATAGATGTGATTG
*
14878516 AGCTAAAAGTACTAAAAGAGATGGAGATAGATGTGATTG
1 AGCTAAAAGTACTAAAAGAGATAGAGATAGATGTGATTG
14878555 A
1 A
14878556 AGAGTATGCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.05, G:0.27, T:0.23
Consensus pattern (39 bp):
AGCTAAAAGTACTAAAAGAGATAGAGATAGATGTGATTG
Found at i:14882895 original size:56 final size:56
Alignment explanation
Indices: 14882835--14882948 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
14882825 AGGATATAGT
14882835 TATTAAATTGAATATTACATAAAATTGAGGCTAATGAATTGAAATAAATTACTTTA
1 TATTAAATTGAATATTACATAAAATTGAGGCTAATGAATTGAAATAAATTACTTTA
* *
14882891 TATTAAATTGAGTATTACATGAAATTGAGGCTAATGAATTGAAATAAATTACTTTA
1 TATTAAATTGAATATTACATAAAATTGAGGCTAATGAATTGAAATAAATTACTTTA
14882947 TA
1 TA
14882949 GATTAATAAC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (56 bp):
TATTAAATTGAATATTACATAAAATTGAGGCTAATGAATTGAAATAAATTACTTTA
Found at i:14886428 original size:24 final size:24
Alignment explanation
Indices: 14886396--14886449 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
14886386 TAGACCAAGA
14886396 CGACGCTGCCCTTCGAACTAAGGC
1 CGACGCTGCCCTTCGAACTAAGGC
14886420 CGACGCTGCCCTTCGAACTAAGGC
1 CGACGCTGCCCTTCGAACTAAGGC
14886444 CGACGC
1 CGACGC
14886450 GTTACCCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15
Consensus pattern (24 bp):
CGACGCTGCCCTTCGAACTAAGGC
Found at i:14889303 original size:15 final size:15
Alignment explanation
Indices: 14889279--14889310 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14889269 TATACATGCA
*
14889279 AAATATAAAAGACAT
1 AAATACAAAAGACAT
14889294 AAATACAAAAGACAT
1 AAATACAAAAGACAT
14889309 AA
1 AA
14889311 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:14894096 original size:42 final size:42
Alignment explanation
Indices: 14894037--14894122 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
14894027 TAAATCCATG
14894037 AATATGGCAGGAGCATTAGTCAAACCAAATGGAATCACAAGA
1 AATATGGCAGGAGCATTAGTCAAACCAAATGGAATCACAAGA
*
14894079 AATATGGCAGGAGCATTAGTCAAACCAAATGGCATCACAAGA
1 AATATGGCAGGAGCATTAGTCAAACCAAATGGAATCACAAGA
14894121 AA
1 AA
14894123 CTCATAGTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.16
Consensus pattern (42 bp):
AATATGGCAGGAGCATTAGTCAAACCAAATGGAATCACAAGA
Found at i:14895479 original size:50 final size:50
Alignment explanation
Indices: 14895415--14895588 Score: 138
Period size: 50 Copynumber: 3.4 Consensus size: 50
14895405 CAATGCTATT
* * ** * *
14895415 TCCCAGATATGGTCTTACATG-GGAGTTCTCATATC-GATGCCTATGCCATG
1 TCCCAGACATGGTCTTAC-GGAGGACCTCTCATATCAG-TGCCAACGCCATG
* *
14895465 TCCCAGACAGGGTCTTACGGAGGACCTCTCATCTCAGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACGGAGGACCTCTCATATCAGTGCCAACGCCATG
* * * *
14895515 TCCCAGACATGGTCTTATGTG-GGACCTCTCATAACCTCAATAATGCCAATGACATG
1 TCCCAGACATGGTCTTACG-GAGGACCTCTCAT-A--TC---AGTGCCAACGCCATG
14895571 TCCCAGACATGGTCTTAC
1 TCCCAGACATGGTCTTAC
14895589 ATAGGATCTC
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
49 1 0.01
50 66 0.66
51 2 0.02
53 2 0.02
56 29 0.29
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACGGAGGACCTCTCATATCAGTGCCAACGCCATG
Found at i:14898163 original size:31 final size:31
Alignment explanation
Indices: 14898125--14898188 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
14898115 AAATTTTGTG
14898125 TGGTGGGATGCTTAGGGATGACCTAAGGCAT
1 TGGTGGGATGCTTAGGGATGACCTAAGGCAT
14898156 TGGTGGGATGCTTAGGGATGACCTAAGGCAT
1 TGGTGGGATGCTTAGGGATGACCTAAGGCAT
14898187 TG
1 TG
14898189 TTTGAATAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.39, T:0.27
Consensus pattern (31 bp):
TGGTGGGATGCTTAGGGATGACCTAAGGCAT
Found at i:14899282 original size:14 final size:15
Alignment explanation
Indices: 14899259--14899302 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 15
14899249 AAATTAAGTC
*
14899259 ATTTTCATTTTTTT-
1 ATTTTTATTTTTTTA
14899273 ATTTTTATTTTTTTA
1 ATTTTTATTTTTTTA
14899288 ATTTCTTATTTTTTT
1 ATTT-TTATTTTTTT
14899303 TCAATATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.48
15 4 0.15
16 10 0.37
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (15 bp):
ATTTTTATTTTTTTA
Found at i:14908002 original size:14 final size:14
Alignment explanation
Indices: 14907944--14908006 Score: 56
Period size: 16 Copynumber: 4.3 Consensus size: 14
14907934 AAATAAGGAA
14907944 AAAAATATATAATAT
1 AAAAATATATAA-AT
*
14907959 AAAATATATATAAGTT
1 AAAA-ATATATAA-AT
*
14907975 AAAAGAGATA-AAAT
1 AAAA-ATATATAAAT
*
14907989 AAAAATAAATAAAT
1 AAAAATATATAAAT
14908003 AAAA
1 AAAA
14908007 CGTATGTAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
13 3 0.08
14 13 0.33
15 6 0.15
16 17 0.44
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (14 bp):
AAAAATATATAAAT
Found at i:14909755 original size:44 final size:44
Alignment explanation
Indices: 14909673--14910733 Score: 1269
Period size: 44 Copynumber: 24.0 Consensus size: 44
14909663 AAGACTTGTA
* * *** *
14909673 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTC
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
* *
14909718 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
14909762 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * ***
14909806 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TT
1 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTT
14909850 GTAC-TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 -T-CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
14909895 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG-TT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* ** * *
14909938 TTTTCCGATCTACTT--CGCCACCAGTATGGTAAGACAAGATCTGCTA
1 TCTT-CGATCTACTTCACGCCAATA-CAT-G-AAGACAAGATCTGCTT
* *
14909984 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
14910028 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG-TT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
14910071 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 -TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
14910116 TCTTGGATCTACTTCACGCCAATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * *
14910160 TCTTGGATCTACTTCATGCCAATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
14910204 TCTTGGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * *
14910248 TCTTCGATCTACTTCATGTCAATACATGAATACAAGATCTACTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * ***
14910292 T-TTCTGATCTATTTCGCCACCAATATGGGAAGACAAGATCTG-TT
1 TCTTC-GATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTT
* * *
14910336 ATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTA
1 -TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * *
14910381 TCTTTGATCTACTTCACACTAATACATGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
14910425 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
14910469 TCTTCGTTCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * ***
14910513 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TT
1 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTT
* * *
14910557 GTAC-TCGATCTACTTTATGCCAATACATGAAGACAAGATCTGTTT
1 -T-CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * *
14910602 TCTTCGATCTACTTTATGCCAATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * * ***
14910646 TTTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTT
* * * * *
14910691 TCTTTGATCTACTTCATGTCAATACATAAAGACAAGATTTGCT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
14910734 GCTTTTCAAC
Statistics
Matches: 882, Mismatches: 109, Indels: 51
0.85 0.10 0.05
Matches are distributed among these distances:
42 6 0.01
43 13 0.01
44 676 0.77
45 171 0.19
46 10 0.01
47 6 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
Found at i:14909911 original size:133 final size:132
Alignment explanation
Indices: 14909673--14910733 Score: 1151
Period size: 133 Copynumber: 8.0 Consensus size: 132
14909663 AAGACTTGTA
* * *** * * *
14909673 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCC
1 TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTG-TTTCTTCGATCTACTTCACGCC
14909738 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
65 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
14909803 CTT
130 CTT
* ***
14909806 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTAC-TCGATCTACTTCACGC
1 TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTGTT-T-CTTCGATCTACTTCACGC
14909870 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
64 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
14909935 G-TT
129 GCTT
* * * *
14909938 TTTTCCGATCTACTTCGCCACCAGT--ATGGTAAGACAAGATCTGCTATCTTTGATCTACTTCAC
1 TCTT-CGATCTACTTCGCCACCAATACAT-G-AAGACAAGATCTG-TTTCTTCGATCTACTTCAC
*
14910001 GCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
62 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
14910066 CTG-TT
127 CTGCTT
* * *
14910071 ATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTGGATCTACTTCACGC
1 -TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTG-TTTCTTCGATCTACTTCACGC
* * *
14910135 CAATACATGAAGACAAGATCTACTTTCTTGGATCTACTTCATGCCAATACATGAAGACAAGATCT
64 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
*
14910200 ACTT
129 GCTT
* *** * *
14910204 TCTTGGATCTACTTC-ATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCATGTC
1 TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTG-TTTCTTCGATCTACTTCACGCC
* * * * * ***
14910268 AATACATGAATACAAGATCTACTTT-TTCTGATCTATTTCGCCACCAATATGGGAAGACAAGATC
65 AATACATGAAGACAAGATCTGCTTTCTTC-GATCTACTTC-ACGCCAATACATGAAGACAAGATC
14910332 TG-TT
128 TGCTT
* * * * * * *
14910336 ATCTTTGATCTACTTC-ACGCCAATACATGAAGACAAGATTTGCTATCTTTGATCTACTTCACAC
1 -TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTG-TTTCTTCGATCTACTTCACGC
* *
14910400 TAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
64 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
*
14910465 GCTC
129 GCTT
* * * * *
14910469 TCTTCGTTCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTG-TTTCTTCGATCTACTTC-ACGC
* *** * *
14910533 CAGTATGGGAAGACAAGATCTG-TTGTAC-TCGATCTACTTTATGCCAATACATGAAGACAAGAT
64 CAATACATGAAGACAAGATCTGCTT-T-CTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
*
14910596 CTGTTT
127 CTGCTT
**** * * * *
14910602 TCTTCGATCTACTT-TATGCCAATACATGAAGACAAGATCTACTTTTTTCGATCTACTTCGCCAC
1 TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCT-GTTTCTTCGATCTACTTC-ACGC
* *** * * * * *
14910666 CAGTATGGGAAGACAAGATCTGCTTTCTTTGATCTACTTCATGTCAATACATAAAGACAAGATTT
64 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
14910731 GCT
129 GCT
14910734 GCTTTTCAAC
Statistics
Matches: 824, Mismatches: 81, Indels: 46
0.87 0.09 0.05
Matches are distributed among these distances:
131 2 0.00
132 278 0.34
133 531 0.64
134 13 0.02
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (132 bp):
TCTTCGATCTACTTCGCCACCAATACATGAAGACAAGATCTGTTTCTTCGATCTACTTCACGCCA
ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
TT
Found at i:14910100 original size:221 final size:217
Alignment explanation
Indices: 14909671--14910728 Score: 1198
Period size: 221 Copynumber: 4.8 Consensus size: 217
14909661 ATAAGACTTG
* * *** *
14909671 TATCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTCTCTTT-GATCTACTTCAT
1 TATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTG-T-TTTTTCGATCTACTTC--
*
14909735 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
61 GCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
* * * ***
14909800 CTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTAC-TCGATCTACT
126 CTGCTTTCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGTT-T-CTTCGATCTACT
* *
14909864 TC-ACGCCAATACATGAAGACAAGATCTGCT
188 TCGACACCAATACAGGAAGACAAGATCTG-T
14909894 T-TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTTTCCGATCTACTTCGCCA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTTT-CGATCTACTTCGCCA
** * *
14909958 CCAGTATGGTAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATC
65 ATA-CAT-G-AAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
*
14910023 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTATCTTCGATCTACTTC-
127 TGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTT-TCTTCGATCTACTTCG
* *
14910087 ACGCCAATACATGAAGACAAGATCTGCT
191 ACACCAATACAGGAAGACAAGATCTG-T
* * * *
14910115 T-TCTTGGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTGGATCTACTTCATGC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT-GTTTTTTCGATCTACTTC--GC
* * * *
14910179 CAATACATGAAGACAAGATCTACTTTCTTGGATCTACTTCATGCCAATACATGAAGACAAGATCT
63 CAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
* * * * *
14910244 GCTTTCTTCGATCTACTTCATGTCAATACATGAATACAAGATCTACTTT-TTCTGATCTATTTCG
128 GCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT-GTTTCTTC-GATCTACTTCG
* **
14910308 CCACCAATATGGGAAGACAAGATCTGT
191 ACACCAATACAGGAAGACAAGATCTGT
* * * *
14910335 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTATCTTT-GATCTACTTCACA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG-T-TTTTTCGATCTACTTCGC-
14910399 CTAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
63 C-AATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
14910464 TGCTCTCTTCGTTCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
127 TGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG-TTTCTTCGATCTACTTCG
* * **
14910529 CCACCAGTATGGGAAGACAAGATCTGT
191 ACACCAATACAGGAAGACAAGATCTGT
* * * *
14910556 TGTAC-TCGATCTACTTTATGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTTATG
1 TAT-CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTT-TTCGATCTAC-TT-CG
* * * * * * ***
14910620 CCAATACATGAAGACAAGATCTACTTTTTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
62 CCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGAT
* * * *
14910685 CTGCTTTCTTTGATCTACTTCATGTCAATACATAAAGACAAGAT
126 CTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
14910729 TTGCTGCTTT
Statistics
Matches: 728, Mismatches: 82, Indels: 51
0.85 0.10 0.06
Matches are distributed among these distances:
219 15 0.02
220 112 0.15
221 434 0.60
222 160 0.22
223 7 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (217 bp):
TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTTTCGATCTACTTCGCCAA
TACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
TTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTCTTCGATCTACTTCGACACC
AATACAGGAAGACAAGATCTGT
Found at i:14915401 original size:16 final size:16
Alignment explanation
Indices: 14915376--14915406 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14915366 TTCTATAATG
*
14915376 AAATGTCATGCAGTCT
1 AAATGCCATGCAGTCT
14915392 AAATGCCATGCAGTC
1 AAATGCCATGCAGTC
14915407 AAAGTGAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
AAATGCCATGCAGTCT
Found at i:14921007 original size:115 final size:118
Alignment explanation
Indices: 14920806--14921043 Score: 410
Period size: 115 Copynumber: 2.0 Consensus size: 118
14920796 ATTTTTAGGT
14920806 CTGGTTAGGATTATTTCACTCTTCTAATGCAAAAAAAAAAAAAAGAAAGAAAGAAACCACAACTC
1 CTGGTTAGGATTATTTCACTCTTCTAATGC-----AAAAAAAAAGAAAGAAAGAAACCACAACTC
14920871 ATTTGTTAGCTAATTGATTAAAATATTGTTATAGGATTAGGATTATTAATTTTAACTA
61 ATTTGTTAGCTAATTGATTAAAATATTGTTATAGGATTAGGATTATTAATTTTAACTA
14920929 CTGGTTAGGATTATTTCACTCTTCTAATGC-AAAAAAAA-AAA-AAAGAAACCACAACTCATTTG
1 CTGGTTAGGATTATTTCACTCTTCTAATGCAAAAAAAAAGAAAGAAAGAAACCACAACTCATTTG
14920991 TTAGCTAATTGATTAAAATATTGTTATAGGATTAGGATTATTAATTTTAACTA
66 TTAGCTAATTGATTAAAATATTGTTATAGGATTAGGATTATTAATTTTAACTA
14921044 TTGCTACTTC
Statistics
Matches: 115, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
115 74 0.64
116 3 0.03
117 8 0.07
123 30 0.26
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (118 bp):
CTGGTTAGGATTATTTCACTCTTCTAATGCAAAAAAAAAGAAAGAAAGAAACCACAACTCATTTG
TTAGCTAATTGATTAAAATATTGTTATAGGATTAGGATTATTAATTTTAACTA
Found at i:14924426 original size:12 final size:12
Alignment explanation
Indices: 14924388--14924418 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
14924378 TGACAATGTA
14924388 AATAAATAAATG
1 AATAAATAAATG
14924400 AATAAATAAAATG
1 AATAAAT-AAATG
14924413 AATAAA
1 AATAAA
14924419 AATATGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (12 bp):
AATAAATAAATG
Found at i:14924457 original size:26 final size:25
Alignment explanation
Indices: 14924388--14924450 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
14924378 TGACAATGTA
*
14924388 AATAAATAA-ATGAATAA-ATAAAATG
1 AATAAA-AATATGAA-AATATAAAAAG
14924413 AATAAAAATATGAAAATATAAAAAG
1 AATAAAAATATGAAAATATAAAAAG
*
14924438 ATATATAAATATG
1 A-ATAAAAATATG
14924451 TATATATGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 4 0.12
25 19 0.58
26 10 0.30
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (25 bp):
AATAAAAATATGAAAATATAAAAAG
Found at i:14924721 original size:12 final size:12
Alignment explanation
Indices: 14924704--14924734 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14924694 AATATAAAAA
14924704 TATATAAGCATG
1 TATATAAGCATG
*
14924716 TATATATGCATG
1 TATATAAGCATG
14924728 TATATAA
1 TATATAA
14924735 ATAAGTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (12 bp):
TATATAAGCATG
Found at i:14926590 original size:129 final size:128
Alignment explanation
Indices: 14926446--14926755 Score: 426
Period size: 129 Copynumber: 2.4 Consensus size: 128
14926436 ATGTAGCTTC
** * *
14926446 AATCCACTCTGCTACAAATTCAAAGGGACGA-AATTGGTTTCTTTTGTCTGCTCAACTGCAACTT
1 AATCCACTCCACTACAACTTC-AAGGGA-GAGAATTGGTTTCTTTCGTCTGCTCAACTGCAACTT
* *
14926510 CAGGGAGATAAGACTGAATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTT
64 CAGGGAGATAAGACTGAATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATATGTGATTTT
* *
14926575 AATCCACTCCACTACAACTTCAAGGAGATAGAATTGGTTTCTTTCGTCTGCTCCACTGCAACTTC
1 AATCCACTCCACTACAACTTCAAGG-GAGAGAATTGGTTTCTTTCGTCTGCTCAACTGCAACTTC
* * * * *
14926640 ATGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCGGAGAGATAAGATATGTGATTTT
65 AGGGAGATAAGACTGAATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATATGTGATTTT
* *
14926704 AATCCGCTCCACTACAACTTC-AGGGAGATAGGATTGGTTTCTTTCGTCTGCT
1 AATCCACTCCACTACAACTTCAAGGGAG--AGAATTGGTTTCTTTCGTCTGCT
14926756 TCCTACTATC
Statistics
Matches: 161, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
127 2 0.01
128 8 0.05
129 151 0.94
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (128 bp):
AATCCACTCCACTACAACTTCAAGGGAGAGAATTGGTTTCTTTCGTCTGCTCAACTGCAACTTCA
GGGAGATAAGACTGAATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATATGTGATTTT
Found at i:14926594 original size:44 final size:42
Alignment explanation
Indices: 14926541--14926743 Score: 130
Period size: 44 Copynumber: 4.7 Consensus size: 42
14926531 GATCTACTCT
* *
14926541 ACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCC
1 ACTACAACTTCAGAGAGATAAGA-AT-TGGTTTTAATCCGCTCC
*
14926585 ACTACAACTTCA-AGGAGAT-AGAATTGGTTTCT-TTCGTCTGCTCC
1 ACTACAACTTCAGA-GAGATAAGAATTGGTTT-TAATC--C-GCTCC
* * * *** * *
14926629 ACTGCAACTTCATG-GAGATAAG-ACTGGATGCGATCTGCTCT
1 ACTACAACTTCA-GAGAGATAAGAATTGGTTTTAATCCGCTCC
* * *
14926670 ACTGCAACTTCGGAGAGATAAGATATGTGATTTTAATCCGCTCC
1 ACTACAACTTCAGAGAGATAAGA-AT-TGGTTTTAATCCGCTCC
* *
14926714 ACTACAACTTCAGGGAGAT-AGGATTGGTTT
1 ACTACAACTTCAGAGAGATAAGAATTGGTTT
14926744 CTTTCGTCTG
Statistics
Matches: 121, Mismatches: 25, Indels: 29
0.69 0.14 0.17
Matches are distributed among these distances:
40 1 0.01
41 36 0.30
42 4 0.03
43 8 0.07
44 70 0.58
45 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (42 bp):
ACTACAACTTCAGAGAGATAAGAATTGGTTTTAATCCGCTCC
Found at i:14926677 original size:41 final size:40
Alignment explanation
Indices: 14926492--14926692 Score: 118
Period size: 41 Copynumber: 4.8 Consensus size: 40
14926482 GTTTCTTTTG
* *
14926492 TCTGCTCAACTGCAACTTCAGGGAGATAAGACTGAATGCGA
1 TCTGCTCCACTGCAACTTCA-GGAGATAAGACTGGATGCGA
* * * * ***
14926533 TCTACTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTGCAACTTCAG-GAGATAAGA-C--TGGATGCGA
** * * * *
14926577 TCCACTCCACTACAACTTCAAGGAGAT-AGAATTGGTTTCTTTCG-
1 TCTGCTCCACTGCAACTTC-AGGAGATAAG-ACTGG----ATGCGA
14926621 TCTGCTCCACTGCAACTTCATGGAGATAAGACTGGATGCGA
1 TCTGCTCCACTGCAACTTCA-GGAGATAAGACTGGATGCGA
* *
14926662 TCTGCTCTACTGCAACTTCGGAGAGATAAGA
1 TCTGCTCCACTGCAACTTCAG-GAGATAAGA
14926693 TATGTGATTT
Statistics
Matches: 125, Mismatches: 21, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
40 5 0.04
41 56 0.45
42 1 0.01
43 3 0.02
44 53 0.42
45 7 0.06
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (40 bp):
TCTGCTCCACTGCAACTTCAGGAGATAAGACTGGATGCGA
Found at i:14926885 original size:131 final size:131
Alignment explanation
Indices: 14926750--14927658 Score: 1406
Period size: 131 Copynumber: 6.9 Consensus size: 131
14926740 GTTTCTTTCG
* *
14926750 TCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* *
14926815 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGAACTAGTGGCTTAA
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAA
14926880 A
131 A
* * *
14926881 TCTGCTTCTTACTACCTCGGGAAGATAAGATTTGCCGTCTTCGATCTGTTCCACTACTGCTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* * *
14926946 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGGTCAGGGAGATAGGACTGATGGCTTAA
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAA
14927011 A
131 A
* * * * *
14927012 TCTGCTTCCTACTACCTTGAGAAAATAAGATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* * *
14927077 GAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAA
14927142 A
131 A
* * * *
14927143 TCAGCTTCCTACTACCTCGGGAAAATAAGATTCGTCGTCTTCGATCTGCTCCGCTACTGCTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
*
14927208 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTACTCAAGGAGATAGGACTGGTGGCTTAA
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAA
14927273 A
131 A
* *
14927274 TCTGCTTCTTACTACCTCAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* ** *
14927339 GAGATAAGATCTACAATCTTCAACCCACTTTACTGCTGCTCAAGGAGATAGGACTGGTGGTTTAA
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAA
14927404 A
131 A
* * **
14927405 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTACTCCATTACTTTTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
*
14927470 GAGATAAGATCTACAATCTTTAACCTACTCCACTGCTGCTC-AGAGAGATAGGACTGGTGGCTTA
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAG-GAGATAGGACTGGTGGCTTA
14927534 AA
130 AA
*** * * * *
14927536 TCTGCTTCCTACTACCTCAATAAGATAAGATTCACCGTCTTCAATCTGCTCTACTACTACTTAGG
1 TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* * *
14927601 GAGATAAGATCTACAATCTTCAACCTACTCCACTACTCCTCAGGGAGATAGGACTGGT
66 GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGT
14927659 TTCACCGATC
Statistics
Matches: 707, Mismatches: 69, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
130 2 0.00
131 704 1.00
132 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
TCTGCTTCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAA
A
Found at i:14933856 original size:12 final size:12
Alignment explanation
Indices: 14933818--14933848 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
14933808 TGACAATGTA
14933818 AATAAATAAATG
1 AATAAATAAATG
14933830 AATAAATAAAATG
1 AATAAAT-AAATG
14933843 AATAAA
1 AATAAA
14933849 AATATGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (12 bp):
AATAAATAAATG
Found at i:14933888 original size:26 final size:25
Alignment explanation
Indices: 14933818--14933880 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
14933808 TGACAATGTA
*
14933818 AATAAATAA-ATGAATAA-ATAAAATG
1 AATAAA-AATATGAA-AATATAAAAAG
14933843 AATAAAAATATGAAAATATAAAAAG
1 AATAAAAATATGAAAATATAAAAAG
*
14933868 ATATATAAATATG
1 A-ATAAAAATATG
14933881 TATATATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 4 0.12
25 19 0.58
26 10 0.30
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (25 bp):
AATAAAAATATGAAAATATAAAAAG
Found at i:14934157 original size:12 final size:12
Alignment explanation
Indices: 14934140--14934170 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14934130 AATATAAAAA
14934140 TATATAAGCATG
1 TATATAAGCATG
*
14934152 TATATATGCATG
1 TATATAAGCATG
14934164 TATATAA
1 TATATAA
14934171 ATAAGTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (12 bp):
TATATAAGCATG
Found at i:14937925 original size:63 final size:63
Alignment explanation
Indices: 14937836--14937982 Score: 186
Period size: 63 Copynumber: 2.3 Consensus size: 63
14937826 CGGTCTAAGA
** * * * *
14937836 AATGATTGTGCGTGTTATGGTGCTTGTGTAAAATAAATTGGCGATGACTGTGTTGGTGCAGGG
1 AATGATTGCACGTGTTATGGTGCTTGTGTAAAATAAACTAGCGATGACTGTGTTGGAGCAGAG
* * * *
14937899 AATGATTGCACGTGTTGTGGTTCTTGTGTAAAATAAACTAGTGATGATTGTGTTGGAGCAGAG
1 AATGATTGCACGTGTTATGGTGCTTGTGTAAAATAAACTAGCGATGACTGTGTTGGAGCAGAG
**
14937962 AATGATTGCGTGTGTTATGGT
1 AATGATTGCACGTGTTATGGT
14937983 ACATGTTGTG
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.36
Consensus pattern (63 bp):
AATGATTGCACGTGTTATGGTGCTTGTGTAAAATAAACTAGCGATGACTGTGTTGGAGCAGAG
Found at i:14939645 original size:52 final size:52
Alignment explanation
Indices: 14939567--14939671 Score: 165
Period size: 52 Copynumber: 2.0 Consensus size: 52
14939557 TATTAATCTA
* * **
14939567 AACAACATAATAATTAACTATTTAAAATTAAATAATTTGATAATATTTTCTT
1 AACAACATAATAATTAACAAATTAAAATTAAATAATTAAATAATATTTTCTT
*
14939619 AACATCATAATAATTAACAAATTAAAATTAAATAATTAAATAATATTTTCTT
1 AACAACATAATAATTAACAAATTAAAATTAAATAATTAAATAATATTTTCTT
14939671 A
1 A
14939672 CCATTTGTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.51, C:0.08, G:0.01, T:0.40
Consensus pattern (52 bp):
AACAACATAATAATTAACAAATTAAAATTAAATAATTAAATAATATTTTCTT
Found at i:14940251 original size:15 final size:15
Alignment explanation
Indices: 14940231--14940265 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
14940221 GAAAAATACA
14940231 TACTATTCCCTCTTC
1 TACTATTCCCTCTTC
14940246 TACTATTCCCTCTTC
1 TACTATTCCCTCTTC
14940261 T-CTAT
1 TACTAT
14940266 CGAATTGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.14, C:0.37, G:0.00, T:0.49
Consensus pattern (15 bp):
TACTATTCCCTCTTC
Found at i:14943288 original size:17 final size:17
Alignment explanation
Indices: 14943266--14943323 Score: 71
Period size: 17 Copynumber: 3.3 Consensus size: 17
14943256 ATTACTTTTT
14943266 TAAAATATTAAAAATTA
1 TAAAATATTAAAAATTA
*
14943283 TAAAATATTAAAAATCA
1 TAAAATATTAAAAATTA
* *
14943300 TTAAAATTACTAAAAAGTA
1 -TAAAA-TATTAAAAATTA
14943319 TAAAA
1 TAAAA
14943324 AAAATTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 16 0.46
18 10 0.29
19 9 0.26
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (17 bp):
TAAAATATTAAAAATTA
Found at i:14943302 original size:10 final size:9
Alignment explanation
Indices: 14943267--14943357 Score: 60
Period size: 10 Copynumber: 9.6 Consensus size: 9
14943257 TTACTTTTTT
14943267 AAAATATT-
1 AAAATATTA
14943275 AAAA-ATTA
1 AAAATATTA
14943283 TAAAATATTA
1 -AAAATATTA
14943293 AAAATCATTA
1 AAAAT-ATTA
* *
14943303 AAATTACTA
1 AAAATATTA
*
14943312 AAAAGTATAA
1 AAAA-TATTA
*
14943322 AAAAAATTTA
1 AAAATA-TTA
*
14943332 AAAATTTTTA
1 AAAA-TATTA
14943342 AAAACTAATTA
1 AAAA-T-ATTA
14943353 AAAAT
1 AAAAT
14943358 TGACATGTCA
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
7 3 0.05
8 4 0.06
9 16 0.25
10 34 0.53
11 7 0.11
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (9 bp):
AAAATATTA
Found at i:14943343 original size:21 final size:21
Alignment explanation
Indices: 14943319--14943358 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14943309 CTAAAAAGTA
14943319 TAAAAA-AAATTTAAAAATTTT
1 TAAAAACAAA-TTAAAAATTTT
*
14943340 TAAAAACTAATTAAAAATT
1 TAAAAACAAATTAAAAATT
14943359 GACATGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAAACAAATTAAAAATTTT
Found at i:14948532 original size:18 final size:19
Alignment explanation
Indices: 14948497--14948534 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
14948487 TATATATCAT
* *
14948497 ATTAAAAATTAATTTTAAA
1 ATTAAAAATAAATATTAAA
14948516 ATTAAAAA-AAATATTAAA
1 ATTAAAAATAAATATTAAA
14948534 A
1 A
14948535 AAATCAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATTAAAAATAAATATTAAA
Found at i:14948699 original size:29 final size:30
Alignment explanation
Indices: 14948657--14948722 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
14948647 CCAAAACGAT
* *
14948657 AATTTAACTCTTTTTAAAAGTTGATAATTA
1 AATTTAACTCTTTTTAAAAGTTAATAATCA
* * *
14948687 AATTTAA-TTTTTTTAAATGTTAATAGTCA
1 AATTTAACTCTTTTTAAAAGTTAATAATCA
14948716 AATTTAA
1 AATTTAA
14948723 AAAAAAAACA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.48
Consensus pattern (30 bp):
AATTTAACTCTTTTTAAAAGTTAATAATCA
Found at i:14948971 original size:16 final size:16
Alignment explanation
Indices: 14948927--14948980 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
14948917 TTTGGTTCAT
* *
14948927 TGTAATGGAATAAAGT
1 TGTAATGGAATAGAGA
* *
14948943 TGTAATAGAATAGGGA
1 TGTAATGGAATAGAGA
14948959 TGTAATGGAATAGAGA
1 TGTAATGGAATAGAGA
*
14948975 CGTAAT
1 TGTAAT
14948981 AGTAATTCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.43, C:0.02, G:0.28, T:0.28
Consensus pattern (16 bp):
TGTAATGGAATAGAGA
Found at i:14951855 original size:10 final size:10
Alignment explanation
Indices: 14951821--14951846 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14951811 ACAAGAAATG
14951821 CAAATTTCAA
1 CAAATTTCAA
14951831 CAAATTTCAA
1 CAAATTTCAA
14951841 CAAATT
1 CAAATT
14951847 CCAAGAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (10 bp):
CAAATTTCAA
Found at i:14951887 original size:35 final size:34
Alignment explanation
Indices: 14951812--14951896 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 34
14951802 CAGAACTCAA
* * *
14951812 CAAGAAATGCAAATTTCAACAAATTTCAACAAATTC
1 CAAGAAATGCAAA--TAAACAAACTCCAACAAATTC
*
14951848 CAAGAAATGCAAATAAACAGAACTCCAACAAATTT
1 CAAGAAATGCAAATAAACA-AACTCCAACAAATTC
*
14951883 CAAGAAATACAAAT
1 CAAGAAATGCAAAT
14951897 TTCAAGAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
34 5 0.12
35 25 0.58
36 13 0.30
ACGTcount: A:0.54, C:0.19, G:0.07, T:0.20
Consensus pattern (34 bp):
CAAGAAATGCAAATAAACAAACTCCAACAAATTC
Found at i:14951896 original size:16 final size:16
Alignment explanation
Indices: 14951875--14951905 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14951865 CAGAACTCCA
14951875 ACAAATTTCAAGAAAT
1 ACAAATTTCAAGAAAT
14951891 ACAAATTTCAAGAAA
1 ACAAATTTCAAGAAA
14951906 AATGAAATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.13, G:0.06, T:0.23
Consensus pattern (16 bp):
ACAAATTTCAAGAAAT
Found at i:14954418 original size:16 final size:16
Alignment explanation
Indices: 14954386--14954419 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14954376 GGTTAGCCTC
*
14954386 TCATTTCCTTCTCATT
1 TCATTTCCTCCTCATT
*
14954402 TCATTTCCTCCTTATT
1 TCATTTCCTCCTCATT
14954418 TC
1 TC
14954420 CTCTCCGTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.32, G:0.00, T:0.56
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:14955543 original size:205 final size:202
Alignment explanation
Indices: 14955170--14955826 Score: 835
Period size: 205 Copynumber: 3.2 Consensus size: 202
14955160 AGAAATTAGA
* * * * * *
14955170 AAGTTGAATGCCTTAATAAGGATGTATGGTATGGTGTTTCTATCTTGTAATGCTTGAAAACTGTG
1 AAGTTGAATGCCTTAATATGGATGCATGATATAGTGTTTCCATCTTGTAATGCTTGAAAAC-GTA
* * * * *
14955235 TATAAACCAAAATGGATGAAAGTATAATTGCATCT-TGTGTT-T-T-AAAATTAGGAATATTTTT
65 TATAAACCAGAGTGGATGAAAGTATAATTGCATCTGTGTTTTGTGTCAAAATTAGCAATATTTCT
* * * * *
14955296 GTCATTAATTGCTGATTTGCATGTTCTGCTGCTCTGCCTTGTTTTCATTTGGATGATTTTACCAT
130 GTCATTAATTGCTAATTTTCATGTTCTACTGCTCTGCCTTGTTTTCATTTGGATAATTGTACCAT
14955361 ATATAATGT
195 ATA-AATGT
14955370 AAGTTGAATGCCTTAATATGGATGCATGATATAGTGTTTCCATCTTGTAATGCTTGAAAAC-TAT
1 AAGTTGAATGCCTTAATATGGATGCATGATATAGTGTTTCCATCTTGTAATGCTTGAAAACGTAT
* *
14955434 ATAAACCAGAGTGAATTG-AAGTATTATTGCATCTGGTGTTTTGTGTACCAAAATTAGCAATATT
66 ATAAACCAGAGTGGA-TGAAAGTATAATTGCATCT-GTGTTTTGTGT--CAAAATTAGCAATATT
* *
14955498 TCTGTCATTAATTGCTAATTTTCATGTTCTACTGCTCTCCCTTGTTTTCATTTGGATAATTGCAC
127 TCTGTCATTAATTGCTAATTTTCATGTTCTACTGCTCTGCCTTGTTTTCATTTGGATAATTGTAC
*
14955563 CATATAAGCTGT
192 CATATAA-ATGT
*
14955575 AAGTTGAATGCCATAATATGGATGCATGATATAGTGTTTCCATCTTGTAATGCTTGAAAACTGTA
1 AAGTTGAATGCCTTAATATGGATGCATGATATAGTGTTTCCATCTTGTAATGCTTGAAAAC-GTA
*
14955640 TATAAACCAGAGTGGATGAAAGTATAATTGCATTTGTGTTTTGTGTTTCAAAAATTA-CTAATAT
65 TATAAACCAGAGTGGATGAAAGTATAATTGCATCTGTGTTTTGTG--TC-AAAATTAGC-AATAT
* * * * * *
14955704 TTCTATCATTGAACTACTAATTTT-ATTGTTCCACTGCTCTGCCTTGATTTCTTTTGGATAATTG
126 TTCTGTCATT-AATTGCTAATTTTCA-TGTTCTACTGCTCTGCCTTGTTTTCATTTGGATAATTG
*
14955768 TACCATATAAAATGC
189 TACCATAT-AAATGT
* *
14955783 AAGTTGAATGCCTTAAGATGGATGCATGGTATAGTGTTTCCATC
1 AAGTTGAATGCCTTAATATGGATGCATGATATAGTGTTTCCATC
14955827 ATGCTCGAAA
Statistics
Matches: 400, Mismatches: 38, Indels: 30
0.85 0.08 0.06
Matches are distributed among these distances:
198 29 0.07
199 2 0.00
200 61 0.15
201 1 0.00
202 1 0.00
204 1 0.00
205 140 0.35
206 14 0.04
207 53 0.13
208 96 0.24
209 2 0.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (202 bp):
AAGTTGAATGCCTTAATATGGATGCATGATATAGTGTTTCCATCTTGTAATGCTTGAAAACGTAT
ATAAACCAGAGTGGATGAAAGTATAATTGCATCTGTGTTTTGTGTCAAAATTAGCAATATTTCTG
TCATTAATTGCTAATTTTCATGTTCTACTGCTCTGCCTTGTTTTCATTTGGATAATTGTACCATA
TAAATGT
Found at i:14956148 original size:52 final size:51
Alignment explanation
Indices: 14956055--14956156 Score: 127
Period size: 52 Copynumber: 2.0 Consensus size: 51
14956045 CTATTGCATA
* * * *
14956055 CTTTAGCTTTGCAGCAATTTTTTGTTTCAAAACGAGTGATGTAGGATAAGG
1 CTTTAGCTTTGCAGAAATTTTGTGTTTCAAAACGAGAGATGTAAGATAAGG
14956106 CTTTAGCTTTGCA-AAATGTTGTGTGTTTCAAAA-GAAGAGATGTAAGATAAG
1 CTTTAGCTTTGCAGAAAT-TT-TGTGTTTCAAAACG-AGAGATGTAAGATAAG
14956157 TAAGGAGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
50 3 0.07
51 16 0.36
52 25 0.57
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (51 bp):
CTTTAGCTTTGCAGAAATTTTGTGTTTCAAAACGAGAGATGTAAGATAAGG
Found at i:14956322 original size:40 final size:40
Alignment explanation
Indices: 14956240--14956322 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
14956230 GAGGAAACAA
* * *
14956240 AAGAAATATATAAAGAACATCGGAAAGGAATTAAGAGAGT
1 AAGAAATATATAAAGAACATCGGAAAAGAATCAACAGAGT
* * *
14956280 AAGAAATATATAGAGAACATCGGAAAAGAGTCAACAGCGT
1 AAGAAATATATAAAGAACATCGGAAAAGAATCAACAGAGT
14956320 AAG
1 AAG
14956323 GAATCAATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.53, C:0.08, G:0.23, T:0.16
Consensus pattern (40 bp):
AAGAAATATATAAAGAACATCGGAAAAGAATCAACAGAGT
Found at i:14956919 original size:74 final size:72
Alignment explanation
Indices: 14956828--14957052 Score: 317
Period size: 74 Copynumber: 3.0 Consensus size: 72
14956818 ATTGCAGCAG
* *
14956828 TTCCTACTTTCCCTTTCATTTTCTCTAGTTCTAAACTTTTGCAGCAGTTTCCCTTCTTTTGTCTT
1 TTCCTACTTT-CCTTTCATTTTCTCTAGTTCTAAACTTTTGTAGCAGTTTCCCTTCTTTTAT-TT
14956893 CTCTGGTTC
64 CTCTGGTTC
* * *
14956902 TTCCTACTTTCCTTTTCATTCTCTCTAGTTCTAAACTTTTGTAGTAGTTTCCCTTCTTTAATTTC
1 TTCCTACTTTCC-TTTCATTTTCTCTAGTTCTAAACTTTTGTAGCAGTTTCCCTTCTTTTATTT-
*
14956967 CTCTGGTTT
64 CTCTGGTTC
*
14956976 TTCCTACTTTTCCTTTCATTTTCTCTAGTTCTAAACTTTTGTA-CTAATTTCCCTTCTTTTATTT
1 TTCCTAC-TTTCCTTTCATTTTCTCTAGTTCTAAACTTTTGTAGC-AGTTTCCCTTCTTTTA-TT
14957040 TCTCTGGTTC
63 TCTCTGGTTC
14957050 TTC
1 TTC
14957053 AACTTTTGCA
Statistics
Matches: 135, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
73 4 0.03
74 123 0.91
75 8 0.06
ACGTcount: A:0.12, C:0.26, G:0.08, T:0.54
Consensus pattern (72 bp):
TTCCTACTTTCCTTTCATTTTCTCTAGTTCTAAACTTTTGTAGCAGTTTCCCTTCTTTTATTTCT
CTGGTTC
Found at i:14965613 original size:12 final size:13
Alignment explanation
Indices: 14965596--14965632 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
14965586 GAACCGGACA
14965596 CGAACCGAA-CTC
1 CGAACCGAAGCTC
14965608 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
14965620 CGAACCGTAGCTC
1 CGAACCGAAGCTC
14965633 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:14975348 original size:61 final size:59
Alignment explanation
Indices: 14975251--14975450 Score: 206
Period size: 68 Copynumber: 3.2 Consensus size: 59
14975241 TTAACTTTAA
* * *
14975251 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTACATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
*
14975310 TATTAAATTAATAGAATATTTATCTACAGATAAATATTAAATTAAATTTAATATTAAGATAATCA
1 TATTAAATTAATAGAATACTTATC-A-AGATAAATATTAAATTAAATTTAATATT---A-AAT--
14975375 CTT
58 C-T
* **
14975378 TAATCTTAAATTAATAAAATAC-TATCAAGATAAGCATTAAATTAAATTTAATATTAAATC-
1 T-A--TTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
*
14975438 TATTAAAATAATA
1 TATTAAATTAATA
14975451 TTATTTTTGG
Statistics
Matches: 120, Mismatches: 9, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
57 10 0.08
59 23 0.19
60 2 0.02
61 26 0.22
62 1 0.01
64 4 0.03
65 4 0.03
67 1 0.01
68 28 0.23
69 2 0.02
70 4 0.03
71 15 0.12
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.40
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
Found at i:14978659 original size:56 final size:55
Alignment explanation
Indices: 14978572--14978705 Score: 148
Period size: 56 Copynumber: 2.4 Consensus size: 55
14978562 TGATGACTAA
* * *
14978572 AATATTGTCCATGTGCATATTGAGTACT-A-CACATAATTAATAGCTCACCACATAAT
1 AATATTGCCCAAGTGCTTATTGAGTACTAACCACATAATTAATAG-T--CCACATAAT
* *
14978628 AATATTGCCCAAGTGCTTA-TGTAGTACTACACCACATAATTGATAGTTCACATAAT
1 AATATTGCCCAAGTGCTTATTG-AGTACTA-ACCACATAATTAATAGTCCACATAAT
14978684 AATATTGCCCAAGTGCATTATT
1 AATATTGCCCAAGTGC-TTATT
14978706 AATACTGCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
55 2 0.03
56 46 0.69
57 3 0.04
58 3 0.04
59 13 0.19
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (55 bp):
AATATTGCCCAAGTGCTTATTGAGTACTAACCACATAATTAATAGTCCACATAAT
Found at i:14979921 original size:24 final size:24
Alignment explanation
Indices: 14979888--14979955 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
14979878 TGGAAATTCT
14979888 AAAATGGTTTAGCATCTAACACAC
1 AAAATGGTTTAGCATCTAACACAC
* * * *
14979912 AAAATCGTTT--CTTCAAAATCCCAC
1 AAAATGGTTTAGCATC-TAA-CACAC
14979936 AAAATGGTTTAGCATCTAAC
1 AAAATGGTTTAGCATCTAAC
14979956 TCCTTTGCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
22 3 0.09
23 2 0.06
24 23 0.70
25 2 0.06
26 3 0.09
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (24 bp):
AAAATGGTTTAGCATCTAACACAC
Found at i:14982361 original size:13 final size:13
Alignment explanation
Indices: 14982343--14982371 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14982333 GATTTGAGAC
14982343 ACACGGACGAGCT
1 ACACGGACGAGCT
14982356 ACACGGACGAGCT
1 ACACGGACGAGCT
14982369 ACA
1 ACA
14982372 TGAGCTGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.31, G:0.28, T:0.07
Consensus pattern (13 bp):
ACACGGACGAGCT
Found at i:14990104 original size:24 final size:24
Alignment explanation
Indices: 14990075--14990123 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14990065 TGTAAGGTAT
14990075 ATAAGTTAAATATGTTAGTATGTG
1 ATAAGTTAAATATGTTAGTATGTG
14990099 ATAAGTTAAATATGTTAGTATGTG
1 ATAAGTTAAATATGTTAGTATGTG
14990123 A
1 A
14990124 AATAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (24 bp):
ATAAGTTAAATATGTTAGTATGTG
Found at i:14993297 original size:26 final size:26
Alignment explanation
Indices: 14993270--14993324 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
14993260 AGTTAATAAA
14993270 TTCTCTTTGAGTTTTCTTTT-CAAGAAT
1 TTCTC-TTGAG-TTTCTTTTACAAGAAT
*
14993297 TTCTCTTGAGTTTCTTTTAGAAGAAT
1 TTCTCTTGAGTTTCTTTTACAAGAAT
14993323 TT
1 TT
14993325 TAACAATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 8 0.31
26 13 0.50
27 5 0.19
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.55
Consensus pattern (26 bp):
TTCTCTTGAGTTTCTTTTACAAGAAT
Found at i:14994211 original size:33 final size:33
Alignment explanation
Indices: 14994169--14994231 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
14994159 CATTTGAGGT
*
14994169 CAATTTGACTAAGTATCAAATGGAACTACAGGC
1 CAATTTGACTAAGTATCAAACGGAACTACAGGC
* *
14994202 CAATTTGACTAAGTTTCGAACGGAACTACA
1 CAATTTGACTAAGTATCAAACGGAACTACA
14994232 AGAGAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (33 bp):
CAATTTGACTAAGTATCAAACGGAACTACAGGC
Done.