Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 51 of 218
Found at i:15521531 original size:30 final size:30
Alignment explanation
Indices: 15521496--15521553 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
15521486 TTTCAGGAGC
*
15521496 CACACGGGCTGGGCACATGCCCATGTGAGA
1 CACACGGGCTGGACACATGCCCATGTGAGA
15521526 CACACGGGCTGGACACATGCCCATGTGA
1 CACACGGGCTGGACACATGCCCATGTGA
15521554 TAGCCAGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.14
Consensus pattern (30 bp):
CACACGGGCTGGACACATGCCCATGTGAGA
Found at i:15527635 original size:41 final size:41
Alignment explanation
Indices: 15527587--15527664 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
15527577 CTGTCTAACC
*
15527587 TAATTGACAAATTCTATTATTTAACTTCTGTTTTACACACA
1 TAATTGACAAATTCTATTATTCAACTTCTGTTTTACACACA
* *
15527628 TAATTGACGAATTTTATTATTCAACTTCTGTTTTACA
1 TAATTGACAAATTCTATTATTCAACTTCTGTTTTACA
15527665 TGATAAATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.46
Consensus pattern (41 bp):
TAATTGACAAATTCTATTATTCAACTTCTGTTTTACACACA
Found at i:15531169 original size:18 final size:19
Alignment explanation
Indices: 15531136--15531173 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
15531126 TTTAGCTCTA
*
15531136 TTTAATTTATTTTTTAATT
1 TTTAATATATTTTTTAATT
15531155 TTTAATATA-TTTTTAATT
1 TTTAATATATTTTTTAATT
15531173 T
1 T
15531174 ATATTATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTAATATATTTTTTAATT
Found at i:15531181 original size:18 final size:18
Alignment explanation
Indices: 15531142--15531182 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15531132 TCTATTTAAT
*
15531142 TTAT-TTTTTAATTTTTA
1 TTATATTTTTAATTTATA
*
15531159 ATATATTTTTAATTTATA
1 TTATATTTTTAATTTATA
15531177 TTATAT
1 TTATAT
15531183 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATATTTTTAATTTATA
Found at i:15538652 original size:57 final size:58
Alignment explanation
Indices: 15538549--15538658 Score: 195
Period size: 57 Copynumber: 1.9 Consensus size: 58
15538539 GTAACTTTCT
15538549 TTATAATTGAATAACAGAAAAAATTTACCAATAATTAGATGACTACCAAAAAAGAAAG
1 TTATAATTGAATAACAGAAAAAATTTACCAATAATTAGATGACTACCAAAAAAGAAAG
* *
15538607 TTATAATTGAGTAACAGAAAAAA-TTATCAATAATTAGATGACTACCAAAAAA
1 TTATAATTGAATAACAGAAAAAATTTACCAATAATTAGATGACTACCAAAAAA
15538659 AAGAAAGAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
57 28 0.56
58 22 0.44
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (58 bp):
TTATAATTGAATAACAGAAAAAATTTACCAATAATTAGATGACTACCAAAAAAGAAAG
Found at i:15539134 original size:19 final size:20
Alignment explanation
Indices: 15539112--15539166 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 20
15539102 GCCCATTAAG
15539112 CCCCCAAAAAAAAACCTAA-
1 CCCCCAAAAAAAAACCTAAC
*
15539131 CCCCAAAAAAAAAACCTAAC
1 CCCCCAAAAAAAAACCTAAC
*
15539151 CCCCCCAAAAAAAACC
1 CCCCCAAAAAAAAACC
15539167 AAGAAACCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.56, C:0.40, G:0.00, T:0.04
Consensus pattern (20 bp):
CCCCCAAAAAAAAACCTAAC
Found at i:15541659 original size:12 final size:12
Alignment explanation
Indices: 15541642--15541677 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
15541632 AACATTTTGA
15541642 CATTCATGCATT
1 CATTCATGCATT
15541654 CATTCATGCATT
1 CATTCATGCATT
*
15541666 CATTCATACATT
1 CATTCATGCATT
15541678 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:15551000 original size:30 final size:30
Alignment explanation
Indices: 15550960--15551061 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
15550950 AATTAAAAAA
* * *
15550960 AAATTACATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCTTAAAC-TTTCATT
*
15550990 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* *
15551020 AAATTTCACTTAGACCCTTAAACTTTCATT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
15551050 AAATTTCATTTT
1 AAATTTCATTTT
15551062 AATCCTAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
29 4 0.06
30 59 0.94
ACGTcount: A:0.30, C:0.22, G:0.03, T:0.45
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCATT
Found at i:15551651 original size:13 final size:12
Alignment explanation
Indices: 15551643--15551685 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
15551633 AGAGAAGAGG
15551643 AAAAAAGAAAGA
1 AAAAAAGAAAGA
15551655 AAAAAAGAGAA-A
1 AAAAAAGA-AAGA
*
15551667 GAAAAAGAAAGA
1 AAAAAAGAAAGA
15551679 AAAAAAG
1 AAAAAAG
15551686 TAATTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 2 0.07
12 23 0.85
13 2 0.07
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAGA
Found at i:15551657 original size:10 final size:10
Alignment explanation
Indices: 15551650--15551682 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
15551640 AGGAAAAAAG
15551650 AAAGAAA-AA
1 AAAGAAAGAA
15551659 AAGAGAAAGAA
1 AA-AGAAAGAA
15551670 AAAGAAAGAA
1 AAAGAAAGAA
15551680 AAA
1 AAA
15551683 AAGTAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.09
10 16 0.73
11 4 0.18
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:15551660 original size:14 final size:14
Alignment explanation
Indices: 15551643--15551684 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
15551633 AGAGAAGAGG
15551643 AAAAAAGAAAGAAA
1 AAAAAAGAAAGAAA
*
15551657 AAAAGAGAAAGAAA
1 AAAAAAGAAAGAAA
*
15551671 AAGAAAGAAA-AAA
1 AAAAAAGAAAGAAA
15551684 A
1 A
15551685 GTAATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAGAAA
Found at i:15551694 original size:11 final size:11
Alignment explanation
Indices: 15551680--15551706 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15551670 AAAGAAAGAA
15551680 AAAAAGTAATT
1 AAAAAGTAATT
15551691 AAAAAGTAATT
1 AAAAAGTAATT
15551702 AAAAA
1 AAAAA
15551707 AATAAAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (11 bp):
AAAAAGTAATT
Found at i:15552346 original size:38 final size:37
Alignment explanation
Indices: 15552295--15552482 Score: 150
Period size: 38 Copynumber: 5.1 Consensus size: 37
15552285 TCGTGTTTTC
* * *
15552295 AAAATTCTAGTGTTTCAAAAATTTTCTTGTTTTCAGAA
1 AAAATTATCGTGTTTCAAAAATTTTCGTGTTTTCA-AA
* * * * *
15552333 AAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAA
1 AAAATTATCGTGTTTCAAAAATTTTCGTGTTTTCAAA
* *
15552370 AAAATCAT-GTCTTTCAAAAATTTTCGTGTTTTCAAAA
1 AAAATTATCGTGTTTCAAAAATTTTCGTGTTTTC-AAA
* * * **
15552407 AAAATGACCGTGTTTCAAAAATTTCCGTG-TTAAAAA
1 AAAATTATCGTGTTTCAAAAATTTTCGTGTTTTCAAA
* *
15552443 AAAATCT-TCGTATTTTCAAAAAACTTTCGTG-TTTCAAA
1 AAAAT-TATCGT-GTTTC-AAAAATTTTCGTGTTTTCAAA
15552481 AA
1 AA
15552483 TTTCCGTGTT
Statistics
Matches: 118, Mismatches: 27, Indels: 10
0.76 0.17 0.06
Matches are distributed among these distances:
36 31 0.26
37 23 0.19
38 64 0.54
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (37 bp):
AAAATTATCGTGTTTCAAAAATTTTCGTGTTTTCAAA
Found at i:15552406 original size:17 final size:17
Alignment explanation
Indices: 15552285--15552406 Score: 77
Period size: 17 Copynumber: 6.8 Consensus size: 17
15552275 TAAAGAAAAA
*
15552285 TCGTGTTTTCAAAATTC
1 TCGTGTTTTCAAAATTT
*
15552302 TAGTG-TTTCAAAAATTT
1 TCGTGTTTTC-AAAATTT
*
15552319 TCTTGTTTTCAGAAAAAATTT
1 TCGTGTTTTC----AAAATTT
15552340 TCGTGTTTT-ATAAATTT
1 TCGTGTTTTCA-AAATTT
* * ***
15552357 CCGTATTTTCAAAAAAA
1 TCGTGTTTTCAAAATTT
*
15552374 TCATGTCTTTCAAAAATTT
1 TCGTGT-TTTC-AAAATTT
15552393 TCGTGTTTTCAAAA
1 TCGTGTTTTCAAAA
15552407 AAAATGACCG
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
16 5 0.06
17 36 0.46
18 13 0.16
19 9 0.11
21 16 0.20
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (17 bp):
TCGTGTTTTCAAAATTT
Found at i:15552409 original size:74 final size:75
Alignment explanation
Indices: 15552307--15552482 Score: 196
Period size: 74 Copynumber: 2.4 Consensus size: 75
15552297 AATTCTAGTG
* * *** * * * **
15552307 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGT-GTTAAAAAAA
15552372 AATCAT-GT-C
65 AATCATCGTAC
15552381 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
* *
15552446 ATCTTCGTAT
66 ATCATCGTAC
*
15552456 TTTCAAAAAACTTTCGTG-TTTCAAAAA
1 TTTC-AAAAATTTTCGTGTTTTCAAAAA
15552483 TTTCCGTGTT
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
73 12 0.14
74 49 0.57
75 13 0.15
76 12 0.14
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (75 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
ATCATCGTAC
Found at i:15552482 original size:36 final size:36
Alignment explanation
Indices: 15552442--15552517 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
15552432 CGTGTTAAAA
** *
15552442 AAAAATCTT-CGTATTTTCAAAAAACTTTCGTGTTTC
1 AAAAAT-TTCCGTATTTAAAAAAAAATTTCGTGTTTC
*
15552478 AAAAATTTCCGTGTTTAAAAAAAAATTTCGTGTTTC
1 AAAAATTTCCGTATTTAAAAAAAAATTTCGTGTTTC
15552514 AAAA
1 AAAA
15552518 TTCTCGTGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 2 0.06
36 33 0.94
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAAATTTCCGTATTTAAAAAAAAATTTCGTGTTTC
Found at i:15552518 original size:35 final size:37
Alignment explanation
Indices: 15552460--15552536 Score: 115
Period size: 36 Copynumber: 2.1 Consensus size: 37
15552450 TCGTATTTTC
*
15552460 AAAAAACTTTCGTGTTTCAAAAATT-TCCGTGT-TTAA
1 AAAAAAATTTCGTGTTTCAAAAATTCT-CGTGTCTTAA
15552496 AAAAAAATTTCGTGTTTC-AAAATTCTCGTGTCTTAA
1 AAAAAAATTTCGTGTTTCAAAAATTCTCGTGTCTTAA
15552532 AAAAA
1 AAAAA
15552537 GTTTTCATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
35 11 0.29
36 27 0.71
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.36
Consensus pattern (37 bp):
AAAAAAATTTCGTGTTTCAAAAATTCTCGTGTCTTAA
Found at i:15552550 original size:36 final size:35
Alignment explanation
Indices: 15552460--15552551 Score: 87
Period size: 36 Copynumber: 2.6 Consensus size: 35
15552450 TCGTATTTTC
* * *
15552460 AAAAAACTTTCGTGTTTCAAAAATTTCCGTGTTTAA
1 AAAAAAATTTCATATTTC-AAAATTTCCGTGTTTAA
* *
15552496 AAAAAAATTTCGTGTTTCAAAA-TTCTCGTGTCTTAA
1 AAAAAAATTTCATATTTCAAAATTTC-CGTGT-TTAA
**
15552532 AAAAAGTTTTCATATTTCAA
1 AAAAAAATTTCATATTTCAA
15552552 TCGGATCACG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
34 3 0.06
35 9 0.18
36 37 0.76
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (35 bp):
AAAAAAATTTCATATTTCAAAATTTCCGTGTTTAA
Found at i:15562854 original size:12 final size:12
Alignment explanation
Indices: 15562839--15562874 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
15562829 TTCATTTGAC
15562839 CATTCATGCATT
1 CATTCATGCATT
15562851 CATTCATGCATT
1 CATTCATGCATT
15562863 CAATTCAT-CATT
1 C-ATTCATGCATT
15562875 GCATATCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 17 0.74
13 6 0.26
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:15567425 original size:18 final size:18
Alignment explanation
Indices: 15567380--15567427 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
15567370 GCCCATTAAG
15567380 CCCCCCAAAAAAACCTAA
1 CCCCCCAAAAAAACCTAA
**
15567398 CCCCAAAAAAAAACCTAA
1 CCCCCCAAAAAAACCTAA
15567416 CCCCCCAAAAAA
1 CCCCCCAAAAAA
15567428 CCAAGAAACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.54, C:0.42, G:0.00, T:0.04
Consensus pattern (18 bp):
CCCCCCAAAAAAACCTAA
Found at i:15567916 original size:34 final size:35
Alignment explanation
Indices: 15567878--15567955 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 35
15567868 TTTAAGTATT
* *
15567878 TATATATATGATGTATATATT-TTTAATGCCATTA
1 TATATATATGATGTATATATTCTTAAATACCATTA
* * * *
15567912 TATATTTCTTATGTATATATTCTTAAATACTATTA
1 TATATATATGATGTATATATTCTTAAATACCATTA
*
15567947 TATACATAT
1 TATATATAT
15567956 ATATATTTTA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
34 18 0.53
35 16 0.47
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (35 bp):
TATATATATGATGTATATATTCTTAAATACCATTA
Found at i:15569878 original size:12 final size:12
Alignment explanation
Indices: 15569861--15569896 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
15569851 AACATTTTGA
15569861 CATTCATGCATT
1 CATTCATGCATT
15569873 CATTCATGCATT
1 CATTCATGCATT
*
15569885 CATTCATACATT
1 CATTCATGCATT
15569897 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:15578183 original size:68 final size:70
Alignment explanation
Indices: 15578017--15578191 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
15578007 CTTTTCAAGG
* * *
15578017 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
15578082 GTTTT
66 GTTTT
* * ** *
15578087 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGTACGCTGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
15578151 TGTTTT
65 TGTTTT
** *
15578157 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
15578192 TTAATTTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
68 31 0.34
70 26 0.28
71 35 0.38
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.35
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
GTTTT
Found at i:15578341 original size:71 final size:70
Alignment explanation
Indices: 15578209--15578567 Score: 370
Period size: 71 Copynumber: 4.9 Consensus size: 70
15578199 TTTTGTTTTC
* * *
15578209 AAAATCAACTCATATTGC-TGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGT-ATTTCAATTTCT
15578273 GTTGTCA
64 GTTGTCA
* *
15578280 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTATG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTCAATTTCTG
*
15578345 TT-TAA
65 TTGTCA
* *
15578350 AAAATTAGCTCATATTGC-AGA-G-GAGTTGAGCCT-GGTCACACGCTGAGGTATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--ACACGCTGAGGTATTTCAATTTCT
*
15578411 GTTTTCA
64 GTTGTCA
***
15578418 ATTTCTGTTTTTCAAAATCACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAT
1 A------------AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAT
15578483 TTCAATTTCTGTTTGTCA
54 TTCAATTTCTG-TTGTCA
* * *
15578501 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGCTCACGCTGAGGTTTTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACGCTGAGGTATTTCAATTTCTG
15578566 TT
65 TT
15578568 CTTCAATTTC
Statistics
Matches: 246, Mismatches: 20, Indels: 44
0.79 0.06 0.14
Matches are distributed among these distances:
65 2 0.01
67 36 0.15
68 4 0.02
69 3 0.01
70 18 0.07
71 67 0.27
72 54 0.22
80 14 0.06
81 3 0.01
82 26 0.11
83 17 0.07
84 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTCAATTTCTGT
TGTCA
Found at i:15578396 original size:67 final size:68
Alignment explanation
Indices: 15578209--15578414 Score: 256
Period size: 67 Copynumber: 3.0 Consensus size: 68
15578199 TTTTGTTTTC
* * *
15578209 AAAATCAACTCATATTGCTGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTTTG
1 AAAATCAACTCATATTGCAGAGGTGAGTTGAGCCT-AGGACACGCTGAGGT-ATTTCAATTTATG
*
15578274 TTGTCA
64 TT-TAA
*
15578280 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTATG
1 AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCT-AGGACACGCTGAGGTATTTCAATTTATG
15578345 TTTAA
64 TTTAA
* * *
15578350 AAAATTAGCTCATATTGCAGA-G-GAGTTGAGCCT-GGTCACACGCTGAGGTATTTCAATTTCTG
1 AAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTAGG--ACACGCTGAGGTATTTCAATTTATG
15578412 TTT
64 TTT
15578415 TCAATTTCTG
Statistics
Matches: 123, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
65 2 0.02
67 37 0.30
68 1 0.01
69 3 0.02
70 18 0.15
71 31 0.25
72 31 0.25
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (68 bp):
AAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTAGGACACGCTGAGGTATTTCAATTTATGTT
TAA
Found at i:15578432 original size:14 final size:13
Alignment explanation
Indices: 15578400--15578428 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15578390 CGCTGAGGTA
15578400 TTTCAATTTCTGT
1 TTTCAATTTCTGT
15578413 TTTCAATTTCTGT
1 TTTCAATTTCTGT
15578426 TTT
1 TTT
15578429 TCAAAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (13 bp):
TTTCAATTTCTGT
Found at i:15578488 original size:82 final size:79
Alignment explanation
Indices: 15578358--15578847 Score: 328
Period size: 87 Copynumber: 6.3 Consensus size: 79
15578348 AAAAAATTAG
15578358 CTCATATTGC-AGA-G-GAGTTGAGCCT-GGTCACACGCTGAGGTATTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCGG-CACACGCTGAGGTATTTCAATTTCTGTTTTCAA
15578419 TTTCTGTTTTTCAAAATCA
65 TTTCTG---TT-AAAATCA
15578438 CTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACGCTGAGGTATTTCAATTTCTGTTTGTC-A
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTATTTCAATTTCTGTTT-TCAA
15578501 --------AAAATCAA
65 TTTCTGTTAAAATC-A
* * *
15578509 CTCATATTGTGAGAGGTGAGTTGAGCCTCGGCTCACGCTGAGGTTTTTCAATTTCTGTTCTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTATTTCAATTTCTGTT-TTCAA
15578574 TTTCTGTTCAAAAAAAAATCAA
65 TTTCTGTT------AAAATC-A
*
15578596 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACATGCTGAGGTAATTTCAATTTCTGTTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGT-ATTTCAATTTCTGTTTTCA
*
15578660 A--------AAATTCAA
64 ATTTCTGTTAAAATC-A
* ** * * *
15578669 CTTATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTCAATTTTTTTGTTTTC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGTATTTCAA--TTTCTGTTTTC
*****
15578733 AA---AAAAAAAAATCAA
63 AATTTCTGTTAAAATC-A
* * *
15578748 CTTATATTGCGAGAGGTGAGTTGAGCCTCGTCACATGCTGAGGTATTTTCAATTTC---TTT---
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTA-TTTCAATTTCTGTTTTCAA
***
15578807 TTT-TAAAAAAATCAA
65 TTTCTGTTAAAATC-A
15578822 CTCATATTGCGAGAGGTGAGTTGAGC
1 CTCATATTGCGAGAGGTGAGTTGAGC
15578848 TTCAGATTAC
Statistics
Matches: 348, Mismatches: 25, Indels: 80
0.77 0.06 0.18
Matches are distributed among these distances:
70 6 0.02
71 31 0.09
72 34 0.10
73 47 0.14
74 48 0.14
75 3 0.01
78 3 0.01
79 45 0.13
80 16 0.05
81 3 0.01
82 30 0.09
83 13 0.04
84 2 0.01
87 51 0.15
88 16 0.05
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (79 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTATTTCAATTTCTGTTTTCAAT
TTCTGTTAAAATCA
Found at i:15578574 original size:14 final size:14
Alignment explanation
Indices: 15578555--15578582 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15578545 GCTGAGGTTT
15578555 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
15578569 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
15578583 AAAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:15578720 original size:160 final size:155
Alignment explanation
Indices: 15578279--15578853 Score: 660
Period size: 152 Copynumber: 3.7 Consensus size: 155
15578269 TTTTGTTGTC
* *
15578279 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTCAATTTCT
* *
15578344 G-TTTAAAAAATT-AGCTCATATTGC-AGAG--GAGTTGAGCCT-GGTCACACGCTGAGGTATTT
65 GTTTTAAAAAATTCAACTCATATTGCGAGAGATGAGTTGAGCCTCAG--ACACGCTGAGGTATTT
***
15578403 CAATTTCTGTTTTCAATTTCTGTT-TTT
128 CAATTTCTGTTTTCAATTTCTGTTAAAA
*
15578430 CAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTCAATTTCTG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTCAATTTCTG
* * * * * *
15578494 TTTGTCAAAAA-TCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGCTCACGCTGAGGTTTTTC
66 TTT-TAAAAAATTCAACTCATATTGCGAGAGATGAGTTGAGCCTCAG-ACACGCTGAGGTATTTC
15578558 AATTTCTGTTCTTCAATTTCTGTTCAAAA
129 AATTTCTGTT-TTCAATTTCTGTT-AAAA
*
15578587 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGT-ATTTCAATTTC
* * * *
15578652 TGTTTTCAAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
64 TGTTTTAAAAAATTCAACTCATATTGCGAGAGATGAGTTGAGCCTC-AGACACGCTGAGGTATTT
**
15578717 CAATTT-T-TTTGT---TTTC--AAAAAA
128 CAATTTCTGTTT-TCAATTTCTGTTAAAA
* * *
15578739 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGTCACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GACACGCTGAGGTA-TTTCAATTTC
* * * *
15578804 TTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
64 -TGTTTTAAAAAATTCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGA
15578854 TTACACACTG
Statistics
Matches: 373, Mismatches: 32, Indels: 37
0.84 0.07 0.08
Matches are distributed among these distances:
149 25 0.07
150 33 0.09
151 24 0.06
152 70 0.19
153 39 0.10
154 37 0.10
155 19 0.05
157 7 0.02
158 33 0.09
159 21 0.06
160 64 0.17
161 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (155 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTCAATTTCTG
TTTTAAAAAATTCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGACACGCTGAGGTATTTCAA
TTTCTGTTTTCAATTTCTGTTAAAA
Found at i:15578759 original size:79 final size:75
Alignment explanation
Indices: 15578585--15578847 Score: 320
Period size: 79 Copynumber: 3.5 Consensus size: 75
15578575 TTCTGTTCAA
*
15578585 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAA--
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGT-ATTTCAATT
*
15578648 TTTCTGTTTTC
65 TTTTTGTTTTC
* * ** * *
15578659 -AAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTCAATTT
15578723 TTTTGTTTTC
66 TTTTGTTTTC
* ***
15578733 AAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGTCACATGCTGAGGTATTTTC
1 ----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTA-TTTC
*
15578798 AATTTCTTT-TTTT-
61 AATTTTTTTGTTTTC
15578811 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
15578848 TTCAGATTAC
Statistics
Matches: 163, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
72 7 0.04
73 47 0.29
74 46 0.28
79 51 0.31
80 12 0.07
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTCAATTT
TTTTGTTTTC
Found at i:15579086 original size:72 final size:73
Alignment explanation
Indices: 15579005--15579146 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
15578995 TCAAAATCAG
* * *
15579005 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
15579069 AATTTCAA
66 AATTTCAA
* *
15579077 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
15579142 AATTT
66 AATTT
15579147 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:15579315 original size:73 final size:71
Alignment explanation
Indices: 15579138--15579337 Score: 238
Period size: 73 Copynumber: 2.8 Consensus size: 71
15579128 ATTTTCGTTT
* * *
15579138 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCT
15579203 GAGCTAA
65 GAGCTAA
* * ** * *
15579210 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGC
* **
15579275 TGAGGTGG
64 TGAGCTAA
* * *
15579283 TTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
15579338 TGGCTCACAC
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
71 39 0.37
72 10 0.10
73 56 0.53
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTG
AGCTAA
Found at i:15579376 original size:14 final size:14
Alignment explanation
Indices: 15579357--15579391 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
15579347 CGCTGAGGTA
15579357 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
15579371 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
15579385 TTTTCAA
1 TTTTCAA
15579392 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:15579407 original size:233 final size:232
Alignment explanation
Indices: 15578997--15579428 Score: 554
Period size: 233 Copynumber: 1.9 Consensus size: 232
15578987 CTACTTTTTC
* * * * *
15578997 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTAT
** * *
15579062 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
66 GTGTTAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
15579127 AATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
131 AATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
15579192 CTCAAGACGCTGAGCTAATTTCAATTTTTGTTTGTCA
196 CTCAAGACGCTGAGCTAATTTCAATTTTTGTTTGTCA
* *
15579229 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT-AATTTA
1 AAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTTA
* *
15579293 TGT-TCATAAAAAATT-AGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGG
65 TGTGT--T-AAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGG
* *** * *
15579355 TATTTTCAA-TTTC-TGGTTTTCAATTTCTGTTT-TTCAAAAATCGACTCATATTGCGAGAGGTG
124 TATTTTCAATTTTCGT-GTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTG
15579417 AGTTGAGCCTCA
188 AGTTGAGCCTCA
15579429 GGTCACATGT
Statistics
Matches: 171, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
231 1 0.01
232 57 0.33
233 71 0.42
234 22 0.13
235 20 0.12
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (232 bp):
AAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTAT
GTGTTAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
CTCAAGACGCTGAGCTAATTTCAATTTTTGTTTGTCA
Found at i:15579484 original size:14 final size:14
Alignment explanation
Indices: 15579446--15579481 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
15579436 TGTCGAGGTA
15579446 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
15579460 TTTTCAAAATCTG-
1 TTTTCAAAATCTGT
15579473 TTTTCAAAA
1 TTTTCAAAA
15579482 ATCAACTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:15579536 original size:88 final size:89
Alignment explanation
Indices: 15579301--15579551 Score: 337
Period size: 88 Copynumber: 2.8 Consensus size: 89
15579291 TATGTTCATA
* * * *
15579301 AAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
* **
15579366 TCTGGTTTTCAATTTCTGTTTTTC
66 TCTGTTTTTCAAAATCTGTTTTTC
* *
15579390 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACATG-TCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACATGCT-GAGGTATTTTCAA
**
15579453 AATCTGTTTTTCAAAATCTG-TTTTC
64 TTTCTGTTTTTCAAAATCTGTTTTTC
* * *
15579478 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
15579543 TCTGTTTTT
66 TCTGTTTTT
15579552 TTTTCAAAAA
Statistics
Matches: 140, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
87 2 0.01
88 68 0.49
89 68 0.49
90 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
TCTGTTTTTCAAAATCTGTTTTTC
Found at i:15579619 original size:30 final size:30
Alignment explanation
Indices: 15579578--15579637 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
15579568 ACTCATATTA
15579578 CGAGAGGTGAGTTGAG-CTTTTTAATTTCTG
1 CGAGAGGTGAGTTGAGTC-TTTTAATTTCTG
*
15579608 CGAGAGTTGAGTTGAGTCTTTTAATTTCTG
1 CGAGAGGTGAGTTGAGTCTTTTAATTTCTG
15579638 TTTTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (30 bp):
CGAGAGGTGAGTTGAGTCTTTTAATTTCTG
Found at i:15580480 original size:17 final size:18
Alignment explanation
Indices: 15580457--15580505 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
15580447 CCATTAAGCC
15580457 CCCCCAAAAAAAACCTAA
1 CCCCCAAAAAAAACCTAA
*
15580475 CCCCAAAAAAAAACCTAA
1 CCCCCAAAAAAAACCTAA
15580493 CCCCCAAAAAAAA
1 CCCCCAAAAAAAA
15580506 AACCAAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.59, C:0.37, G:0.00, T:0.04
Consensus pattern (18 bp):
CCCCCAAAAAAAACCTAA
Found at i:15580802 original size:13 final size:13
Alignment explanation
Indices: 15580784--15580827 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
15580774 TTCTTTCGAA
15580784 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
15580797 TCTTTTTTTTGTGT
1 TCTTTTTTTTCT-T
*
15580811 T-GTTTTTTTCTT
1 TCTTTTTTTTCTT
15580823 TCTTT
1 TCTTT
15580828 ATATATACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:15584623 original size:31 final size:31
Alignment explanation
Indices: 15584542--15584629 Score: 108
Period size: 31 Copynumber: 2.9 Consensus size: 31
15584532 AACTTTTAAG
* *
15584542 AGCTTAATGGGAATTTCTAAAAATTTTGGAA
1 AGCTTAATGAGAATTTTTAAAAATTTTGGAA
* *
15584573 ATC-TAATTAGAATTTTTAAAAATTTT-GAA
1 AGCTTAATGAGAATTTTTAAAAATTTTGGAA
*
15584602 AGGCTTAATGAGATTTTTTAAAAATTTT
1 A-GCTTAATGAGAATTTTTAAAAATTTT
15584630 AGAGCCCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
29 4 0.08
30 21 0.44
31 23 0.48
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (31 bp):
AGCTTAATGAGAATTTTTAAAAATTTTGGAA
Found at i:15584640 original size:61 final size:62
Alignment explanation
Indices: 15584543--15584674 Score: 149
Period size: 61 Copynumber: 2.1 Consensus size: 62
15584533 ACTTTTAAGA
* * * * * ** *
15584543 GCTTAATGGGAATTTCTAAAAATTTTGGAAATCTAATTAGAATT-TTTAAAAATTTTGAAAG
1 GCTTAATGAGAATTTCTAAAAATTTTAGAAACCTAATTAAAATTATTAAAAAAAATTAAAAG
* * **
15584604 GCTTAATGAGATTTTTTAAAAATTTTAGAGCCCTAATTAAAATTATTAAAAAAAATTAAAAG
1 GCTTAATGAGAATTTCTAAAAATTTTAGAAACCTAATTAAAATTATTAAAAAAAATTAAAAG
15584666 GCTTAATGA
1 GCTTAATGA
15584675 TAAATTTCCA
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
61 36 0.62
62 22 0.38
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.37
Consensus pattern (62 bp):
GCTTAATGAGAATTTCTAAAAATTTTAGAAACCTAATTAAAATTATTAAAAAAAATTAAAAG
Found at i:15587053 original size:33 final size:35
Alignment explanation
Indices: 15587011--15587077 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 35
15587001 TCTCATTTAA
*
15587011 TTAACAAATATA-TATTTTAAATATTTTAAAAATT
1 TTAACAAATATATTATTTAAAATATTTTAAAAATT
*
15587045 TTAA-AAATATATTATTTAAAATTTTTTAAAAAT
1 TTAACAAATATATTATTTAAAATATTTTAAAAAT
15587078 AAATACGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 23 0.77
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (35 bp):
TTAACAAATATATTATTTAAAATATTTTAAAAATT
Found at i:15587088 original size:24 final size:25
Alignment explanation
Indices: 15587043--15587091 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
15587033 ATTTTAAAAA
* **
15587043 TTTTAAAAATATATTATTTAAAATT
1 TTTTAAAAATATAATACGTAAAATT
15587068 TTTTAAAAATA-AATACGTAAAATT
1 TTTTAAAAATATAATACGTAAAATT
15587092 GCATTCAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
TTTTAAAAATATAATACGTAAAATT
Found at i:15589395 original size:17 final size:17
Alignment explanation
Indices: 15589373--15589417 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
15589363 TTTATTCAAT
*
15589373 ATAAAAATAGAAAATAA
1 ATAAAAACAGAAAATAA
*
15589390 ATAAAACACCGAAAATAA
1 ATAAAA-ACAGAAAATAA
15589408 A-AAAAACAGA
1 ATAAAAACAGA
15589418 GATGCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 4 0.17
17 10 0.42
18 10 0.42
ACGTcount: A:0.73, C:0.09, G:0.07, T:0.11
Consensus pattern (17 bp):
ATAAAAACAGAAAATAA
Found at i:15589482 original size:18 final size:18
Alignment explanation
Indices: 15589459--15589494 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15589449 CTGTTTTCAA
15589459 TCTCCCAATTTACAGTAT
1 TCTCCCAATTTACAGTAT
* *
15589477 TCTCCCCATTTTCAGTAT
1 TCTCCCAATTTACAGTAT
15589495 ACAAATTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.42
Consensus pattern (18 bp):
TCTCCCAATTTACAGTAT
Found at i:15592261 original size:38 final size:38
Alignment explanation
Indices: 15592218--15592343 Score: 123
Period size: 38 Copynumber: 3.2 Consensus size: 38
15592208 AATTACTATA
15592218 AGAAATAATAATTTAAATTGATTTCTTTTGCAAAATAT
1 AGAAATAATAATTTAAATTGATTTCTTTTGCAAAATAT
* * * *
15592256 AGAAATAA-AA-CTAAGGTTTATAGCTCTTTTG-AAATTACTAT
1 AGAAATAATAATTTAA-ATTGAT--TTCTTTTGCAAA--A-TAT
*
15592297 AAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATAT
1 -AGAAATAATAATTTAAATTGATTTCTTTTGCAAAATAT
15592336 AGAAATAA
1 AGAAATAA
15592344 AACTAAGGTT
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
36 3 0.04
37 6 0.09
38 19 0.28
39 10 0.14
40 2 0.03
41 10 0.14
42 11 0.16
43 5 0.07
44 3 0.04
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (38 bp):
AGAAATAATAATTTAAATTGATTTCTTTTGCAAAATAT
Found at i:15592311 original size:80 final size:80
Alignment explanation
Indices: 15592195--15592355 Score: 304
Period size: 80 Copynumber: 2.0 Consensus size: 80
15592185 AATAAAAAAG
*
15592195 ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGATTTCTTTTGCAAAATATAGAA
1 ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
15592260 ATAAAACTAAGGTTT
66 ATAAAACTAAGGTTT
*
15592275 ATAGCTCTTTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
1 ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
15592340 ATAAAACTAAGGTTT
66 ATAAAACTAAGGTTT
15592355 A
1 A
15592356 ATTCATAAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (80 bp):
ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
ATAAAACTAAGGTTT
Found at i:15593130 original size:23 final size:23
Alignment explanation
Indices: 15593082--15593130 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
15593072 AATATGATAA
*
15593082 AAATTTAAAATATAAACTATTGG
1 AAATTTAAAATATAAACTATTAG
15593105 AAATTTCAAAATA-AAACT-TGTAG
1 AAATTT-AAAATATAAACTAT-TAG
15593128 AAA
1 AAA
15593131 GAAAATTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 1 0.04
23 16 0.70
24 6 0.26
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (23 bp):
AAATTTAAAATATAAACTATTAG
Found at i:15604417 original size:25 final size:23
Alignment explanation
Indices: 15604388--15604434 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15604378 AGCATAAATT
*
15604388 TTATAAAATTATGATATAATTAAAA
1 TTATAAAA-TATAAT-TAATTAAAA
15604413 TTATAAAATATAATTAATTAAA
1 TTATAAAATATAATTAATTAAA
15604435 TAAAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 5 0.24
25 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
TTATAAAATATAATTAATTAAAA
Found at i:15604745 original size:22 final size:23
Alignment explanation
Indices: 15604715--15604761 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
15604705 AGTTTATAAG
15604715 TTTAGAAGT-AAAAATGACTAATT
1 TTTAGAAGTGAAAAATGA-TAATT
*
15604738 TTTA-AAGTGAAAACTGATAATT
1 TTTAGAAGTGAAAAATGATAATT
15604760 TT
1 TT
15604762 GAGCTTAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (23 bp):
TTTAGAAGTGAAAAATGATAATT
Found at i:15607425 original size:9 final size:9
Alignment explanation
Indices: 15607411--15607437 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
15607401 AAAATGGACA
15607411 TGAAATAGG
1 TGAAATAGG
15607420 TGAAATAGG
1 TGAAATAGG
15607429 TGAAATAGG
1 TGAAATAGG
15607438 ATATTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (9 bp):
TGAAATAGG
Found at i:15608506 original size:101 final size:102
Alignment explanation
Indices: 15608238--15608513 Score: 335
Period size: 101 Copynumber: 2.7 Consensus size: 102
15608228 AAAGTGATGG
* * **
15608238 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TGGAATGATAATGGTCAAATGTGTAGT
* * * *
15608301 ACTATGTACAGGCTACTATGTGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTACGTGAACCGGAAAGCTTCGA
* * **
15608339 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-ATTAATGGTCATGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATGGAATGA-TAATGGTCAAATGTGTAGT
* * *
15608403 ACTATATGCAGGCTACTACGTGAACTGGAAAG-TTTGA
65 ACTATGTGCAGGCTACTACGTGAACCGGAAAGCTTCGA
* * * *
15608440 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATGGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATGGAATGATAATGGTCAAATGTGTAGTA
15608505 CTATGTGCA
66 CTATGTGCA
15608514 AACCACCGAA
Statistics
Matches: 149, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 105 0.70
102 39 0.26
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATGGAATGATAATGGTCAAATGTGTAGTA
CTATGTGCAGGCTACTACGTGAACCGGAAAGCTTCGA
Found at i:15613438 original size:109 final size:109
Alignment explanation
Indices: 15613247--15613471 Score: 423
Period size: 109 Copynumber: 2.1 Consensus size: 109
15613237 ATAGGTGTCC
* *
15613247 TAGATGCTTTCAGCCATACTGAAATAGGTACTTCCAAAGACATGAAAGTATTTCACAGTAGGTTT
1 TAGATGCTTTCAACCATACTGAAATAGGTACTTCCAAAGACATGAAAGTAGTTCACAGTAGGTTT
15613312 TTTTCCCTTCTACAACTCATAGAGGTGACATGAGTCTTTGGCCT
66 TTTTCCCTTCTACAACTCATAGAGGTGACATGAGTCTTTGGCCT
*
15613356 TAGATGCTTTCAACCATACTGAAATAGGTACTTCCAAAGACATGAAAGTAGTTCACAGTTGGTTT
1 TAGATGCTTTCAACCATACTGAAATAGGTACTTCCAAAGACATGAAAGTAGTTCACAGTAGGTTT
15613421 TTTTCCCTTCTACAACTCATAGAGGTGACATGAGTCTTTGGCCT
66 TTTTCCCTTCTACAACTCATAGAGGTGACATGAGTCTTTGGCCT
15613465 TAGATGC
1 TAGATGC
15613472 ACCTTATTGA
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 113 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (109 bp):
TAGATGCTTTCAACCATACTGAAATAGGTACTTCCAAAGACATGAAAGTAGTTCACAGTAGGTTT
TTTTCCCTTCTACAACTCATAGAGGTGACATGAGTCTTTGGCCT
Found at i:15617307 original size:27 final size:27
Alignment explanation
Indices: 15617277--15617332 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
15617267 CAGGAATGAT
15617277 TATGCCTTTTTCCAAAATGGAAAAATG
1 TATGCCTTTTTCCAAAATGGAAAAATG
*
15617304 TATGCTTTTTTCCAAAATGGAAAAATG
1 TATGCCTTTTTCCAAAATGGAAAAATG
15617331 TA
1 TA
15617333 ATCATTTGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (27 bp):
TATGCCTTTTTCCAAAATGGAAAAATG
Found at i:15617372 original size:6 final size:6
Alignment explanation
Indices: 15617361--15617413 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
15617351 TAGGTTTCCA
* * * *
15617361 AAATGG AAATGG AAATGG AAATGG AAATAG AAATAG AAATAG AAATAG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
15617409 AAATG
1 AAATG
15617414 ATTCATTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:15617384 original size:18 final size:18
Alignment explanation
Indices: 15617361--15617413 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
15617351 TAGGTTTCCA
*
15617361 AAATGGAAATGGAAATGG
1 AAATGGAAATAGAAATGG
*
15617379 AAATGGAAATAGAAATAG
1 AAATGGAAATAGAAATGG
*
15617397 AAATAGAAATAGAAATG
1 AAATGGAAATAGAAATG
15617414 ATTCATTTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (18 bp):
AAATGGAAATAGAAATGG
Found at i:15641655 original size:19 final size:21
Alignment explanation
Indices: 15641617--15641655 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15641607 CTGGATAAAA
15641617 GTATCAATACTATGGACCAAG
1 GTATCAATACTATGGACCAAG
*
15641638 GTATCGATACT-T-GACCAA
1 GTATCAATACTATGGACCAA
15641656 ATGAACAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 10 0.59
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (21 bp):
GTATCAATACTATGGACCAAG
Found at i:15647851 original size:26 final size:26
Alignment explanation
Indices: 15647814--15647865 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15647804 GAAGCAAGCT
*
15647814 AATCACCTGTGCTTAAAATTGATTAA
1 AATCACCCGTGCTTAAAATTGATTAA
15647840 AATCACCCGTGCTTAAAATTGATTAA
1 AATCACCCGTGCTTAAAATTGATTAA
15647866 GTTTATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (26 bp):
AATCACCCGTGCTTAAAATTGATTAA
Found at i:15650144 original size:20 final size:20
Alignment explanation
Indices: 15650107--15650144 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15650097 ATGCCAAAAG
*
15650107 AAGCCACAAAGAACAACAGA
1 AAGCCACAAAAAACAACAGA
*
15650127 AAGCCACAAAAAAGAACA
1 AAGCCACAAAAAACAACA
15650145 CACGCAAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.24, G:0.13, T:0.00
Consensus pattern (20 bp):
AAGCCACAAAAAACAACAGA
Found at i:15655095 original size:54 final size:55
Alignment explanation
Indices: 15654997--15655112 Score: 132
Period size: 54 Copynumber: 2.1 Consensus size: 55
15654987 ACGGCCTAGC
* *
15654997 ACACGGGCTTGTGACACGGTCGTATGACCCTATTCAGAGAGTTACATGG-GTGAGG
1 ACACGGGCTTGAGACACGGCCGTATGACCCTATTCAGAGAGTTACATGGCGTGA-G
* * *
15655052 ACACGGGC-TGAGACACGGCCGTGTGTCCCTAGTTC-GA-AGGTTACATGGCTTGAG
1 ACACGGGCTTGAGACACGGCCGTATGACCCTA-TTCAGAGA-GTTACATGGCGTGAG
15655106 ACACGGG
1 ACACGGG
15655113 TATGTGTCTC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
53 1 0.02
54 38 0.72
55 14 0.26
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (55 bp):
ACACGGGCTTGAGACACGGCCGTATGACCCTATTCAGAGAGTTACATGGCGTGAG
Found at i:15663454 original size:25 final size:25
Alignment explanation
Indices: 15663410--15663458 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
15663400 GTCGCTGCAA
* *
15663410 GCCACACACTTTATCCACCCAAACC
1 GCCACACACCTTAGCCACCCAAACC
*
15663435 GCCACACACCTTAGCTACCCAAAC
1 GCCACACACCTTAGCCACCCAAAC
15663459 TGCCGCAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.14
Consensus pattern (25 bp):
GCCACACACCTTAGCCACCCAAACC
Found at i:15669955 original size:40 final size:40
Alignment explanation
Indices: 15669924--15670286 Score: 437
Period size: 40 Copynumber: 9.1 Consensus size: 40
15669914 TTACAGTTAT
* * *
15669924 GTGCCCATGTTTGTACTTCGGTACTCCTGATTGCACTTAT
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
* **
15669964 GTGCCCCTATTTGTACTTCACTACCCCTGATTGCACTTAC
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
15670004 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
* *
15670044 GTGCCCTTGTTTGTACTTTGGTACCCCTGATTGCACTTAC
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
* * *
15670084 GTGCCCCTGTTTGTACTTTGGTACCCCTAATTGCACTTAT
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
* * *
15670124 GTGCCCTTATTT-TACTTCGGTACCACTGATTGCACTTAC
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
* *
15670163 ATGCCCCTGTTTGTACTTCGGTACCGCTGATTGCACTTAC
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
* * * * *
15670203 GTGCCCCTGTTTATACTTTGGCACCCCTAAATGCACATCTA-
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCAC-T-TAC
* * * * *
15670244 -TGCCCATGTTTGCACTTTGGTGCCCCTGATCGCACATT-C
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCAC-TTAC
15670283 GTGC
1 GTGC
15670287 TTCTGATTGC
Statistics
Matches: 279, Mismatches: 39, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.12
40 243 0.87
41 1 0.00
42 2 0.01
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.36
Consensus pattern (40 bp):
GTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAC
Found at i:15670110 original size:20 final size:20
Alignment explanation
Indices: 15669931--15670230 Score: 154
Period size: 20 Copynumber: 15.1 Consensus size: 20
15669921 TATGTGCCCA
* *
15669931 TGTTTGTACTTCGGTACTCC
1 TGTTTGTACTTAGGTACCCC
* * * *
15669951 TGATTGCACTTATGTGCCCC
1 TGTTTGTACTTAGGTACCCC
* *
15669971 TATTTGTACTTCA-CTACCCC
1 TGTTTGTACTT-AGGTACCCC
* * * *
15669991 TGATTGCACTTACGTGCCCC
1 TGTTTGTACTTAGGTACCCC
*
15670011 TGTTTGTACTTCGGTACCCC
1 TGTTTGTACTTAGGTACCCC
* * * * *
15670031 TGATTGCACTTACGTGCCCT
1 TGTTTGTACTTAGGTACCCC
*
15670051 TGTTTGTACTTTGGTACCCC
1 TGTTTGTACTTAGGTACCCC
* * * *
15670071 TGATTGCACTTACGTGCCCC
1 TGTTTGTACTTAGGTACCCC
*
15670091 TGTTTGTACTTTGGTACCCC
1 TGTTTGTACTTAGGTACCCC
** * * * *
15670111 TAATTGCACTTATGTGCCCT
1 TGTTTGTACTTAGGTACCCC
* * *
15670131 TATTT-TACTTCGGTACCAC
1 TGTTTGTACTTAGGTACCCC
* * ** *
15670150 TGATTGCACTTACATGCCCC
1 TGTTTGTACTTAGGTACCCC
* *
15670170 TGTTTGTACTTCGGTACCGC
1 TGTTTGTACTTAGGTACCCC
* * * *
15670190 TGATTGCACTTACGTGCCCC
1 TGTTTGTACTTAGGTACCCC
* * *
15670210 TGTTTATACTTTGGCACCCC
1 TGTTTGTACTTAGGTACCCC
15670230 T
1 T
15670231 AAATGCACAT
Statistics
Matches: 192, Mismatches: 85, Indels: 6
0.68 0.30 0.02
Matches are distributed among these distances:
19 12 0.06
20 179 0.93
21 1 0.01
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.38
Consensus pattern (20 bp):
TGTTTGTACTTAGGTACCCC
Found at i:15670267 original size:20 final size:20
Alignment explanation
Indices: 15670253--15670311 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
15670243 ATGCCCATGT
15670253 TTGCACTTTGGTGCCCCTGA
1 TTGCACTTTGGTGCCCCTGA
* * * **
15670273 TCGCACATTCGTGCTTCTGA
1 TTGCACTTTGGTGCCCCTGA
15670293 TTGCACTTTGGTGCCCCTG
1 TTGCACTTTGGTGCCCCTG
15670312 TTATGCATCT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.10, C:0.31, G:0.24, T:0.36
Consensus pattern (20 bp):
TTGCACTTTGGTGCCCCTGA
Found at i:15674937 original size:21 final size:21
Alignment explanation
Indices: 15674899--15674938 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15674889 TTTAGAAAAG
*
15674899 TTAGATAAGTGAAATAAATAA
1 TTAGATAAGAGAAATAAATAA
15674920 TTAGATAA-AGAAATTAAAT
1 TTAGATAAGAGAAA-TAAAT
15674939 GAAGGGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
TTAGATAAGAGAAATAAATAA
Found at i:15680895 original size:21 final size:22
Alignment explanation
Indices: 15680866--15680912 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
15680856 CAGAAGGAGT
*
15680866 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
15680888 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
15680909 GAGT
1 GAGT
15680913 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:15693286 original size:23 final size:23
Alignment explanation
Indices: 15693244--15693287 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15693234 TATGCGTTTG
*
15693244 TATTTTTTAATAAAAGTTTAATA
1 TATTTTTTAATAAAAATTTAATA
15693267 TATTTTTTAA-AATAAATTTAA
1 TATTTTTTAATAA-AAATTTAA
15693288 AATTTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TATTTTTTAATAAAAATTTAATA
Found at i:15694590 original size:16 final size:16
Alignment explanation
Indices: 15694569--15694606 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
15694559 TTTGGTTCGC
15694569 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
15694585 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
15694601 CGTAAT
1 TGTAAT
15694607 AGTAATTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:15694652 original size:45 final size:43
Alignment explanation
Indices: 15694588--15694680 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 43
15694578 ATAGAGGTGT
*
15694588 AATGGAATAGAGGCGTAATAGTAATTCAATTG-TTTGGTTGAATGG
1 AATGGAATAGAGACGTAATAGT-ATTC--TTGATTTGGTTGAATGG
15694633 AATGGAATAGA-ACTGTAATAGTATTCTTGTATTTGGTTGAATGG
1 AATGGAATAGAGAC-GTAATAGTATTCTTG-ATTTGGTTGAATGG
15694677 AATG
1 AATG
15694681 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.07
44 22 0.50
45 19 0.43
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (43 bp):
AATGGAATAGAGACGTAATAGTATTCTTGATTTGGTTGAATGG
Found at i:15695107 original size:120 final size:119
Alignment explanation
Indices: 15694819--15695292 Score: 807
Period size: 120 Copynumber: 4.0 Consensus size: 119
15694809 TTAATCATAT
*
15694819 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
*
15694884 AAATATTCTTATATGAATTTACTAAAA--T--TATGTAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATTTAATATATAATACTATAAAATATAA
*
15694934 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTCATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
*
15694999 AAATATTCTTATATGAATTTACTAAAATCTTAATGTATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAAT-TTAATATATAATACTATAAAATATAA
15695054 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
*
15695119 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAAT-TTAATATATAATACTATAAAATATAA
*
15695174 TTTAAAATAATTATTATTAAACATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA-T
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
* *
15695238 AATTATTCTTATATGAATTTACTAAAATTATAATACATAATACTATAAAA-ATAA
66 AAATATTCTTATATGAATTTACTAAAATT-TAATATATAATACTATAAAATATAA
15695292 T
1 T
15695293 ATTTTTATTT
Statistics
Matches: 342, Mismatches: 11, Indels: 9
0.94 0.03 0.02
Matches are distributed among these distances:
115 90 0.26
118 6 0.02
119 47 0.14
120 199 0.58
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (119 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTACTAAAATTTAATATATAATACTATAAAATATAA
Found at i:15696014 original size:30 final size:30
Alignment explanation
Indices: 15695980--15696038 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
15695970 TTCAGTCTTA
*
15695980 AGCCAAGATAAAGTAGGCAATACCTGAATT
1 AGCCAAGATAAAGTAGGCAATAACTGAATT
*
15696010 AGCCAAGATAAAGTAGGTAATAACTGAAT
1 AGCCAAGATAAAGTAGGCAATAACTGAAT
15696039 AGTGATGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (30 bp):
AGCCAAGATAAAGTAGGCAATAACTGAATT
Found at i:15701276 original size:50 final size:51
Alignment explanation
Indices: 15701156--15701297 Score: 150
Period size: 50 Copynumber: 2.8 Consensus size: 51
15701146 ATTTGGGTAA
* * *
15701156 AGAGA-TCCCATGTAAGACCATGTTTGGGACATGGCGTTGACACCATGATG
1 AGAGACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCATGATG
* * *
15701206 AGAGGTCTTCC--GTAAGACCATGTCTGGGACATGGCATGGGCACCAAT-ATG
1 AGA-GACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC-ATGATG
* * *
15701256 AGA-ACTCCCATGTAAAACCATATCTGGGATATGGCATTGGCA
1 AGAGACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
15701298 GTACAGGAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
48 4 0.05
50 65 0.87
51 3 0.04
52 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (51 bp):
AGAGACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCATGATG
Found at i:15706728 original size:37 final size:37
Alignment explanation
Indices: 15706678--15706756 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
15706668 ATCTAATCGA
* * * *
15706678 AACACGCTAAACGCTTATGAGAGCTAATGCAACCGAT
1 AACACACTAAACGCTCATAAGAGCTAATCCAACCGAT
*
15706715 AACACACTAAACGCTCATAAGAGCTAATCCAATCGAT
1 AACACACTAAACGCTCATAAGAGCTAATCCAACCGAT
15706752 AACAC
1 AACAC
15706757 GCCTCGGCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.42, C:0.27, G:0.14, T:0.18
Consensus pattern (37 bp):
AACACACTAAACGCTCATAAGAGCTAATCCAACCGAT
Found at i:15720632 original size:43 final size:42
Alignment explanation
Indices: 15720582--15720675 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
15720572 TCTTACATGG
* *
15720582 AAATCTCATATCGATGTCAATAGCCCAACTATGGTCTTACACA
1 AAATCTCATATCGATG-CAATAGCCCAAATATGGCCTTACACA
* * * *
15720625 AAGTCTCATATCGATGCCATATCCCAAATATGGCCTTATACA
1 AAATCTCATATCGATGCAATAGCCCAAATATGGCCTTACACA
15720667 AAATCTCAT
1 AAATCTCAT
15720676 GCAATGCCGA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 29 0.66
43 15 0.34
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.29
Consensus pattern (42 bp):
AAATCTCATATCGATGCAATAGCCCAAATATGGCCTTACACA
Found at i:15720668 original size:42 final size:42
Alignment explanation
Indices: 15720582--15720807 Score: 155
Period size: 48 Copynumber: 5.0 Consensus size: 42
15720572 TCTTACATGG
* * * *
15720582 AAATCTCATATCGATGTCAATAGCCCAACTATGGTCTTACACA
1 AAATCTCATATCGATG-CCATATCCCAAATATGGTCTTATACA
* *
15720625 AAGTCTCATATCGATGCCATATCCCAAATATGGCCTTATACA
1 AAATCTCATATCGATGCCATATCCCAAATATGGTCTTATACA
* *
15720667 AAATCTCATGCAATGCCGATGCCATATCCCAGATATGGTCTTATACG
1 AAATCTCAT---AT--CGATGCCATATCCCAAATATGGTCTTATACA
** * * *
15720714 GGATCTTAAATCGATGCTGATGCCATATCCCAGATATGGTCTTATACG
1 AAATC-T-CAT--AT-C-GATGCCATATCCCAAATATGGTCTTATACA
* *
15720762 AGATCTCAAATCGACGCCGATGCCATATCCCAAATATGGTCTTATA
1 AAATCTC--AT--A--TCGATGCCATATCCCAAATATGGTCTTATA
15720808 TGAGATTCAA
Statistics
Matches: 152, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
42 29 0.19
43 15 0.10
45 2 0.01
47 33 0.22
48 70 0.46
49 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
AAATCTCATATCGATGCCATATCCCAAATATGGTCTTATACA
Found at i:15720744 original size:48 final size:48
Alignment explanation
Indices: 15720636--15720820 Score: 241
Period size: 48 Copynumber: 3.9 Consensus size: 48
15720626 AGTCTCATAT
* * * * *
15720636 CGATGCCATATCCCAAATATGGCCTTATACAAAATCTC--ATGCAATGC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAAT-CGATGC
* *
15720683 CGATGCCATATCCCAGATATGGTCTTATACGGGATCTTAAATCGATGC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
* *
15720731 TGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGACGC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
* *
15720779 CGATGCCATATCCCAAATATGGTCTTATATGAGAT-TCAAATC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATC
15720821 AATTCGGTAA
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 39 0.32
48 81 0.66
49 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (48 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
Found at i:15720820 original size:95 final size:95
Alignment explanation
Indices: 15720637--15720820 Score: 246
Period size: 95 Copynumber: 1.9 Consensus size: 95
15720627 GTCTCATATC
* *
15720637 GATGCCATATCCCAAATATGGCCTTATACAAAATCTCATGCAATGCCGATGCCATATCCCAGATA
1 GATGCCATATCCCAAATATGGCCTTATACAAAATCTCATGCAACGCCGATGCCATATCCCAAATA
* *
15720702 TGGTCTTATACGGGATCTTAAATCGATGCT
66 TGGTCTTATACGAGATCTCAAATCGATGCT
* * * * *
15720732 GATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAAT-CGACGCCGATGCCATATCCCAAA
1 GATGCCATATCCCAAATATGGCCTTATACAAAATCTC--ATGCAACGCCGATGCCATATCCCAAA
*
15720796 TATGGTCTTATATGAGAT-TCAAATC
64 TATGGTCTTATACGAGATCTCAAATC
15720821 AATTCGGTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 39 0.51
96 36 0.47
97 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (95 bp):
GATGCCATATCCCAAATATGGCCTTATACAAAATCTCATGCAACGCCGATGCCATATCCCAAATA
TGGTCTTATACGAGATCTCAAATCGATGCT
Found at i:15738357 original size:19 final size:19
Alignment explanation
Indices: 15738335--15738423 Score: 79
Period size: 19 Copynumber: 4.7 Consensus size: 19
15738325 CTGGCACATG
**
15738335 AAGTGCATCCTAGCGTACA
1 AAGTGCATCCTAGCACACA
** *
15738354 AAGTGCATTTTAGCACACG
1 AAGTGCATCCTAGCACACA
*
15738373 AAGTGCATCCTATCACACA
1 AAGTGCATCCTAGCACACA
* * * *
15738392 AAATGCATCCCAACACACG
1 AAGTGCATCCTAGCACACA
*
15738411 AAGTGTATCCTAG
1 AAGTGCATCCTAG
15738424 TGTATAAGCA
Statistics
Matches: 53, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 53 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (19 bp):
AAGTGCATCCTAGCACACA
Found at i:15738393 original size:38 final size:38
Alignment explanation
Indices: 15738328--15738423 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
15738318 GTGCATACTG
* ** * ***
15738328 GCACATGAAGTGCATCCTAGCGTACAAAGTGCATTTTA
1 GCACACGAAGTGCATCCTAGCACACAAAATGCATCCCA
*
15738366 GCACACGAAGTGCATCCTATCACACAAAATGCATCCCA
1 GCACACGAAGTGCATCCTAGCACACAAAATGCATCCCA
* *
15738404 ACACACGAAGTGTATCCTAG
1 GCACACGAAGTGCATCCTAG
15738424 TGTATAAGCA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (38 bp):
GCACACGAAGTGCATCCTAGCACACAAAATGCATCCCA
Found at i:15748787 original size:20 final size:20
Alignment explanation
Indices: 15748740--15748791 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
15748730 TGGTAAAGTC
*
15748740 AATATTGATAAATCCTTAGA
1 AATATTGGTAAATCCTTAGA
*
15748760 AATATTGGTAAATCGTTAGA
1 AATATTGGTAAATCCTTAGA
* *
15748780 TATTTTGGTAAA
1 AATATTGGTAAA
15748792 AGCTTTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.38
Consensus pattern (20 bp):
AATATTGGTAAATCCTTAGA
Found at i:15781505 original size:45 final size:45
Alignment explanation
Indices: 15781448--15781710 Score: 303
Period size: 45 Copynumber: 5.9 Consensus size: 45
15781438 TTATAGTGGA
* * * *** *
15781448 AACGTGTAAGACCACAGCCGAAAGGTTTTATAGCATCATGATTTT
1 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTT
* * * * *
15781493 AACGATTAAGACCATAGCTGAAAGACATTATGGCAGCATAATTTA
1 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTT
*
15781538 AACGAGTAAGACCATAGCTGAAAGACGTTGTGGCATCATGATTTT
1 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTT
* * *
15781583 AAC-AGTAAGACCATAGCTGAAAGATGTTATAGCATCACGATTTT
1 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTT
* * *
15781627 AACAAGTAAGACCATAGCTAAAAGACGTTATGGCATCATGATTCT
1 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTT
* * * * *
15781672 AACGAGTAAGAGCATATCTAAAAGGCGCTATGGCATCAT
1 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCAT
15781711 AAATCAGACG
Statistics
Matches: 186, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 40 0.22
45 146 0.78
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (45 bp):
AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTT
Found at i:15781525 original size:90 final size:89
Alignment explanation
Indices: 15781416--15781687 Score: 220
Period size: 89 Copynumber: 3.0 Consensus size: 89
15781406 GAATAAAACT
* ** * * ***
15781416 ATAGTTGAAAGAAACTATGGCATTATAGTGGAAACGTGTAAGACCACAGCCGAAAGGTTTTATAG
1 ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGACGTTATAG
*
15781481 CATCATGATTTTAACGATTAAGACC
66 CATCATGATTTTAAC-AGTAAGACC
* * ** * * * *
15781506 ATAGCTGAAAGACATTATGGCAGCATAATTTAAACGAGTAAGACCATAGCTGAAAGACGTTGTGG
1 ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGACGTTATAG
15781571 CATCATGATTTTAACAGTAAGACC
66 CATCATGATTTTAACAGTAAGACC
*** * * ** *** * * ** *
15781595 ATAGCTGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGACGTTATGG
1 ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGACGTTATAG
* *
15781660 CATCATGATTCTAACGAGTAAGAGC
66 CATCATGATTTTAAC-AGTAAGACC
15781685 ATA
1 ATA
15781688 TCTAAAAGGC
Statistics
Matches: 152, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
89 77 0.51
90 75 0.49
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (89 bp):
ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGACGTTATAG
CATCATGATTTTAACAGTAAGACC
Found at i:15781625 original size:134 final size:134
Alignment explanation
Indices: 15781453--15781710 Score: 347
Period size: 134 Copynumber: 1.9 Consensus size: 134
15781443 GTGGAAACGT
* * * * * *
15781453 GTAAGACCACAGCCGAAAGGTTTTATAGCATCATGATTTTAACGATTAAGACCATAGCTGAAAGA
1 GTAAGACCACAGCCGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
* * *
15781518 CATTATGGCAGCATAATT-TAAACGAGTAAGACCATAGCTGAAAGACGTTGTGGCATCATGATTT
66 CATTATGGCAGCATAATTCT-AACGAGTAAGACCATAGCTAAAAGACGCTATGGCATCATGATTT
15781582 TAACA
130 TAACA
* *
15781587 GTAAGACCATAGCTGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
1 GTAAGACCACAGCCGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
* * * * * *
15781652 CGTTATGGCATCATGATTCTAACGAGTAAGAGCATATCTAAAAGGCGCTATGGCATCAT
66 CATTATGGCAGCATAATTCTAACGAGTAAGACCATAGCTAAAAGACGCTATGGCATCAT
15781711 AAATCAGACG
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
134 105 0.99
135 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (134 bp):
GTAAGACCACAGCCGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
CATTATGGCAGCATAATTCTAACGAGTAAGACCATAGCTAAAAGACGCTATGGCATCATGATTTT
AACA
Found at i:15781641 original size:89 final size:90
Alignment explanation
Indices: 15781475--15781687 Score: 293
Period size: 89 Copynumber: 2.4 Consensus size: 90
15781465 CCGAAAGGTT
* * * *
15781475 TTATAGCATCATGATTTTAACGATTAAGACCATAGCTGAAAGACATTATGGCAGCATAATTTAAA
1 TTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAAGACATTATAGCAGCACAATTTAAA
* *
15781540 CGAGTAAGACCATAGCTGAAAGACG
66 CAAGTAAGACCATAGCTAAAAGACG
* ** * * *
15781565 TTGTGGCATCATGATTTTAAC-AGTAAGACCATAGCTGAAAGATGTTATAGCATCACGATTTTAA
1 TTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAAGACATTATAGCAGCACAATTTAAA
15781629 CAAGTAAGACCATAGCTAAAAGACG
66 CAAGTAAGACCATAGCTAAAAGACG
* *
15781654 TTATGGCATCATGATTCTAACGAGTAAGAGCATA
1 TTATGGCATCATGATTTTAACGAGTAAGACCATA
15781688 TCTAAAAGGC
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 77 0.72
90 30 0.28
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (90 bp):
TTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAAGACATTATAGCAGCACAATTTAAA
CAAGTAAGACCATAGCTAAAAGACG
Found at i:15792921 original size:50 final size:50
Alignment explanation
Indices: 15792846--15792946 Score: 150
Period size: 50 Copynumber: 2.0 Consensus size: 50
15792836 TGATAGTTGT
* * *
15792846 TAAATTCGGTTTTGGAGTTCATCTTAGGTAGGATTTGT-TCGAATATTGAC
1 TAAATTCGGTTTTAGAATTCATCTTAGGTAGGATTTGTAT-GAATACTGAC
*
15792896 TAAATTTGGTTTTAGAATTCATCTTAGGTAGGATTTGTATGAATACTGAC
1 TAAATTCGGTTTTAGAATTCATCTTAGGTAGGATTTGTATGAATACTGAC
15792946 T
1 T
15792947 TAAAGATTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.43
Consensus pattern (50 bp):
TAAATTCGGTTTTAGAATTCATCTTAGGTAGGATTTGTATGAATACTGAC
Found at i:15794551 original size:3 final size:3
Alignment explanation
Indices: 15794543--15794601 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
15794533 AAACTTTAGG
* * * * **
15794543 TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA TCA TCA CCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
15794591 ATA TTA TTA TT
1 TTA TTA TTA TT
15794602 CTTAAATTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:15807624 original size:26 final size:26
Alignment explanation
Indices: 15807595--15807653 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
15807585 TATTTTCTCG
**
15807595 AAATTTT-TTCAAGGATAAAATTGTCA
1 AAATTTTATT-AAGGATAAAATCATCA
*
15807621 AAATTTTATTAGGGATAAAATCATCA
1 AAATTTTATTAAGGATAAAATCATCA
15807647 AAATTTT
1 AAATTTT
15807654 GTTTGGGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (26 bp):
AAATTTTATTAAGGATAAAATCATCA
Found at i:15817599 original size:16 final size:16
Alignment explanation
Indices: 15817570--15817603 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15817560 TACATAACAT
* *
15817570 ATTATTAATTAATAAA
1 ATTATAAATCAATAAA
15817586 ATTATAAATCAATAAA
1 ATTATAAATCAATAAA
15817602 AT
1 AT
15817604 CATTGAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTATAAATCAATAAA
Found at i:15817727 original size:17 final size:19
Alignment explanation
Indices: 15817685--15817730 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
15817675 ATTTAATTAA
*
15817685 TTAAATATAATTTATATAT
1 TTAAATATGATTTATATAT
*
15817704 ATAAATATGATTT-TAT-T
1 TTAAATATGATTTATATAT
15817721 TTAAATATGA
1 TTAAATATGA
15817731 CAGTAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.42
18 3 0.12
19 11 0.46
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (19 bp):
TTAAATATGATTTATATAT
Found at i:15818119 original size:13 final size:13
Alignment explanation
Indices: 15818103--15818127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15818093 TATTTGAAAG
15818103 TTTTATTATTATA
1 TTTTATTATTATA
15818116 TTTTATTATTAT
1 TTTTATTATTAT
15818128 TTATATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTATTATA
Found at i:15818950 original size:19 final size:21
Alignment explanation
Indices: 15818928--15818967 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15818918 TATTTATTTG
15818928 TTTTCA-TTTTCT-TCTTCCC
1 TTTTCATTTTTCTCTCTTCCC
*
15818947 TTTTTATTTTTCTCTCTTCCC
1 TTTTCATTTTTCTCTCTTCCC
15818968 ATATTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.05, C:0.30, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTCATTTTTCTCTCTTCCC
Found at i:15832822 original size:24 final size:24
Alignment explanation
Indices: 15832756--15832911 Score: 156
Period size: 25 Copynumber: 6.4 Consensus size: 24
15832746 TCATTAGGGG
* *
15832756 TTACCGATTTTAGCTCGTGA-GAGT
1 TTACCGATTTCAGCTCGT-ATGAGC
* *
15832780 TTATCGATTCTCAGCTCGTATGATC
1 TTACCGATT-TCAGCTCGTATGAGC
15832805 TTACCGATTTCAGCTCGTATGAGC
1 TTACCGATTTCAGCTCGTATGAGC
* *
15832829 TTATCGATTTCAACTCGTAAT-AGC
1 TTACCGATTTCAGCTCGT-ATGAGC
* *
15832853 TTACCAATTCTCAGCTCATATGAGC
1 TTACCGATT-TCAGCTCGTATGAGC
15832878 TTACCGATTTACAGCTCGTGA-GAGC
1 TTACCGATTT-CAGCTCGT-ATGAGC
*
15832903 ATACCGATT
1 TTACCGATT
15832912 CATAGCTCAT
Statistics
Matches: 110, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
24 52 0.47
25 57 0.52
26 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (24 bp):
TTACCGATTTCAGCTCGTATGAGC
Found at i:15832833 original size:49 final size:48
Alignment explanation
Indices: 15832756--15832911 Score: 163
Period size: 49 Copynumber: 3.2 Consensus size: 48
15832746 TCATTAGGGG
* * *
15832756 TTACCGATTTTAGCTCGTGA-GAGTTTATCGATTCTCAGCTCGT-ATGATC
1 TTACCGATTTCAGCTCGT-ATGAGCTTATCGATT-TCAGCTCGTAAT-AGC
*
15832805 TTACCGATTTCAGCTCGTATGAGCTTATCGATTTCAACTCGTAATAGC
1 TTACCGATTTCAGCTCGTATGAGCTTATCGATTTCAGCTCGTAATAGC
* * * * *
15832853 TTACCAATTCTCAGCTCATATGAGCTTACCGATTTACAGCTCGTGAGAGC
1 TTACCGATT-TCAGCTCGTATGAGCTTATCGATTT-CAGCTCGTAATAGC
*
15832903 ATACCGATT
1 TTACCGATT
15832912 CATAGCTCAT
Statistics
Matches: 91, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
48 19 0.21
49 54 0.59
50 18 0.20
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (48 bp):
TTACCGATTTCAGCTCGTATGAGCTTATCGATTTCAGCTCGTAATAGC
Found at i:15832924 original size:50 final size:49
Alignment explanation
Indices: 15832806--15832927 Score: 140
Period size: 50 Copynumber: 2.5 Consensus size: 49
15832796 CGTATGATCT
* * * * *
15832806 TACCGATT-TCAGCTCGTATGAGCTTATCGATTTCAACTCGTAATAGCT
1 TACCAATTCTCAGCTCATATGAGCTTACCGATTTCAACTCGTAAGAGCA
* *
15832854 TACCAATTCTCAGCTCATATGAGCTTACCGATTTACAGCTCGTGAGAGCA
1 TACCAATTCTCAGCTCATATGAGCTTACCGATTT-CAACTCGTAAGAGCA
*
15832904 TACCGATTCAT-AGCTCATATGAGC
1 TACCAATTC-TCAGCTCATATGAGC
15832928 ATACATGTAC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 7 0.11
49 23 0.37
50 32 0.51
51 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (49 bp):
TACCAATTCTCAGCTCATATGAGCTTACCGATTTCAACTCGTAAGAGCA
Found at i:15832927 original size:25 final size:25
Alignment explanation
Indices: 15832784--15832931 Score: 90
Period size: 25 Copynumber: 6.0 Consensus size: 25
15832774 GAGAGTTTAT
* * * *
15832784 CGATTCTCAGCTCGTATGATCTTAC
1 CGATTCACAGCTCATATGAGCATAC
* * * *
15832809 CGATT-TCAGCTCGTATGAGCTTAT
1 CGATTCACAGCTCATATGAGCATAC
* *
15832833 CGATTTCA-A-CTCGTAAT-AGCTTAC
1 CGA-TTCACAGCTCAT-ATGAGCATAC
* * *
15832857 CAATTCTCAGCTCATATGAGCTTAC
1 CGATTCACAGCTCATATGAGCATAC
* *
15832882 CGATTTACAGCTCGTGA-GAGCATAC
1 CGATTCACAGCTCAT-ATGAGCATAC
*
15832907 CGATTCATAGCTCATATGAGCATAC
1 CGATTCACAGCTCATATGAGCATAC
15832932 ATGTACAACA
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
23 3 0.03
24 37 0.37
25 59 0.59
26 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (25 bp):
CGATTCACAGCTCATATGAGCATAC
Found at i:15834078 original size:15 final size:16
Alignment explanation
Indices: 15834058--15834087 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15834048 TAGTGCCTTG
15834058 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
15834073 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
15834088 AACATGTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:15835149 original size:20 final size:21
Alignment explanation
Indices: 15835117--15835155 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
15835107 CTGCATTTTG
15835117 AAAATTTTAATAT-TTTCCCT
1 AAAATTTTAATATGTTTCCCT
15835137 AAAATTTCT-ATATGTTTCC
1 AAAATTT-TAATATGTTTCC
15835156 GATTTAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.49
Consensus pattern (21 bp):
AAAATTTTAATATGTTTCCCT
Found at i:15836168 original size:20 final size:21
Alignment explanation
Indices: 15836134--15836172 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15836124 CTCAGCATCG
*
15836134 AACACGATCGTCCACCACTCA
1 AACACGATCGACCACCACTCA
15836155 AACAC-ATCGACCACCACT
1 AACACGATCGACCACCACT
15836173 TGATAAACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.44, G:0.08, T:0.13
Consensus pattern (21 bp):
AACACGATCGACCACCACTCA
Found at i:15840408 original size:13 final size:13
Alignment explanation
Indices: 15840390--15840416 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15840380 TTTTTTTTTG
15840390 AATAAATTGATTT
1 AATAAATTGATTT
15840403 AATAAATTGATTT
1 AATAAATTGATTT
15840416 A
1 A
15840417 TTTATATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AATAAATTGATTT
Found at i:15843737 original size:37 final size:40
Alignment explanation
Indices: 15843687--15843786 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 40
15843677 GCGCAAAAAA
*
15843687 AAACGCCACTAAAGA-A-A-GTTAGCAACGCTTTTCCCAC
1 AAACGCCGCTAAAGACACACGTTAGCAACGCTTTTCCCAC
* **
15843724 AAACGCCGCTAAAGACTACGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAC-AC-A-CGTTAGCAACGCTTTTCCCAC
15843767 AAACGCCGCTAAAGAC-CACG
1 AAACGCCGCTAAAGACACACG
15843787 ACCCTTAGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
37 14 0.27
39 2 0.04
40 1 0.02
41 2 0.04
43 33 0.63
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (40 bp):
AAACGCCGCTAAAGACACACGTTAGCAACGCTTTTCCCAC
Found at i:15843759 original size:43 final size:43
Alignment explanation
Indices: 15843712--15843909 Score: 252
Period size: 43 Copynumber: 4.6 Consensus size: 43
15843702 AAGTTAGCAA
*
15843712 CGCTTTTCCCACAAACGCCGCTAAAGACTACGACCTTTAGCGG
1 CGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGG
*
15843755 CGCTTTTCCCACAAACGCCGCTAAAGACCACGACCCTTAGCGG
1 CGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGG
** * * *
15843798 CGCTTTTCTAACAAACGCCACTATAGACCATGACCTTTAGCGG
1 CGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGG
* * * * *
15843841 TGCTTTTCCCACAGACGCCGCTAAAGATCATGACCTTTAGCAG
1 CGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGG
* * *
15843884 CGCTTCTTGCAAAAAACGCCGCTAAA
1 CGCTT-TTCCCACAAACGCCGCTAAA
15843910 AACATAACCT
Statistics
Matches: 133, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
43 117 0.88
44 16 0.12
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (43 bp):
CGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGG
Found at i:15848181 original size:19 final size:19
Alignment explanation
Indices: 15848153--15848222 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
15848143 ATTATAAAAA
*
15848153 TAAAAGTTTAAAATATTTT
1 TAAAATTTTAAAATATTTT
**
15848172 TAAAATTTTAAAA-A-AAT
1 TAAAATTTTAAAATATTTT
15848189 TAAAATCTTTTAAAAT-TCATTT
1 TAAAA--TTTTAAAATAT--TTT
15848211 TAAAATTTTAAA
1 TAAAATTTTAAA
15848223 TCACGAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
17 6 0.15
18 1 0.03
19 20 0.50
20 7 0.17
22 6 0.15
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (19 bp):
TAAAATTTTAAAATATTTT
Found at i:15849810 original size:41 final size:41
Alignment explanation
Indices: 15849738--15849984 Score: 314
Period size: 41 Copynumber: 5.8 Consensus size: 41
15849728 AGATTTTATT
* * * * *
15849738 ATTAGCGACGTTTTTTCAAAAACGCCGCTAAAGGCACGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
*
15849779 ATAAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
*
15849820 ATTAGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* *
15849861 ATTAGTGGCATTTTTGGCGTTTTCTCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTA---GC------GGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
15849911 ATTAGCGGCGCTTTCTCAAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTC-AAAAACGCCGCTAAAGCCCCGAGC
*
15849953 ATTAGCGGCACTTTCTCAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
15849985 TGCATCAAAA
Statistics
Matches: 182, Mismatches: 14, Indels: 20
0.84 0.06 0.09
Matches are distributed among these distances:
41 103 0.57
42 39 0.21
44 2 0.01
47 2 0.01
50 36 0.20
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (41 bp):
ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
Found at i:15849944 original size:42 final size:41
Alignment explanation
Indices: 15849876--15849984 Score: 182
Period size: 42 Copynumber: 2.6 Consensus size: 41
15849866 TGGCATTTTT
* *
15849876 GGCGTTTTCTCAAAAACGCCGCTAAAGGCCCGAGCATTAGC
1 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGC
15849917 GGCGCTTTCTCAAAAAACGCCGCTAAAGCCCCGAGCATTAGC
1 GGCGCTTTCTC-AAAAACGCCGCTAAAGCCCCGAGCATTAGC
*
15849959 GGCACTTTCTCAAAAACGCCGCTAAA
1 GGCGCTTTCTCAAAAACGCCGCTAAA
15849985 TGCATCAAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 25 0.39
42 39 0.61
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.18
Consensus pattern (41 bp):
GGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGC
Found at i:15849983 original size:133 final size:132
Alignment explanation
Indices: 15849746--15849984 Score: 424
Period size: 133 Copynumber: 1.8 Consensus size: 132
15849736 TTATTAGCGA
*
15849746 CGTTTTTTCAAAAACGCCGCTAAAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 CGTTTTCTCAAAAACGCCGCTAAAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACGCCGCTAAA
* *
15849811 GCCCCGAGCATTAGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCCGAGCATTAGTGGCATTTTT
66 GCCCCGAGCATTAGCGGCACTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGTGGCATTTTT
15849876 GG
131 GG
* *
15849878 CGTTTTCTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTCTCAAAAAACGCCGCTAA
1 CGTTTTCTCAAAAACGCCGCTAAAGGCACGAGCATAAGCGGCGCTTTCTC-AAAAACGCCGCTAA
15849943 AGCCCCGAGCATTAGCGGCACTTTCTCAAAAACGCCGCTAAA
65 AGCCCCGAGCATTAGCGGCACTTTCTCAAAAACGCCGCTAAA
15849985 TGCATCAAAA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
132 47 0.47
133 54 0.53
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (132 bp):
CGTTTTCTCAAAAACGCCGCTAAAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACGCCGCTAAA
GCCCCGAGCATTAGCGGCACTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGTGGCATTTTT
GG
Found at i:15850182 original size:12 final size:12
Alignment explanation
Indices: 15850165--15850190 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15850155 TTTTTTGTCC
15850165 AAACGCCGCTAA
1 AAACGCCGCTAA
15850177 AAACGCCGCTAA
1 AAACGCCGCTAA
15850189 AA
1 AA
15850191 TCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:15853001 original size:11 final size:11
Alignment explanation
Indices: 15852985--15853012 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
15852975 AATCAAGGGA
15852985 AACTATAAACT
1 AACTATAAACT
15852996 AACTATAAACT
1 AACTATAAACT
15853007 AACTAT
1 AACTAT
15853013 TCAAGCTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (11 bp):
AACTATAAACT
Found at i:15854055 original size:17 final size:18
Alignment explanation
Indices: 15854030--15854077 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
15854020 AAAGAAGTCT
15854030 TACAA-ATAAAAAAAAAC
1 TACAACATAAAAAAAAAC
*
15854047 TA-AACATAAAAATAAAAG
1 TACAACATAAAAA-AAAAC
15854065 TACAACA-AAAAAA
1 TACAACATAAAAAA
15854078 TATAAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 2 0.07
17 10 0.37
18 11 0.41
19 4 0.15
ACGTcount: A:0.75, C:0.10, G:0.02, T:0.12
Consensus pattern (18 bp):
TACAACATAAAAAAAAAC
Found at i:15854071 original size:19 final size:19
Alignment explanation
Indices: 15854030--15854079 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
15854020 AAAGAAGTCT
15854030 TACAA-ATAAAAA-AAAAC
1 TACAACATAAAAATAAAAC
*
15854047 TA-AACATAAAAATAAAAG
1 TACAACATAAAAATAAAAC
*
15854065 TACAACAAAAAAATA
1 TACAACATAAAAATA
15854080 TAAATAAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 2 0.07
17 9 0.32
18 6 0.21
19 11 0.39
ACGTcount: A:0.74, C:0.10, G:0.02, T:0.14
Consensus pattern (19 bp):
TACAACATAAAAATAAAAC
Found at i:15855652 original size:22 final size:22
Alignment explanation
Indices: 15855638--15855690 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
15855628 ATAGAAATAC
*
15855638 TAAGAAAATAAAATAATATCAA
1 TAAGAAAATAAAATAAAATCAA
*
15855660 TAAGAAAAT-AATTAAAAT-AA
1 TAAGAAAATAAAATAAAATCAA
*
15855680 TAATAAAATAA
1 TAAGAAAATAA
15855691 TAACAAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 10 0.37
21 8 0.30
22 9 0.33
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (22 bp):
TAAGAAAATAAAATAAAATCAA
Found at i:15855669 original size:17 final size:17
Alignment explanation
Indices: 15855647--15855706 Score: 52
Period size: 20 Copynumber: 3.4 Consensus size: 17
15855637 CTAAGAAAAT
15855647 AAAATAATATCAATAAG
1 AAAATAATATCAATAAG
*
15855664 AAAATAATTAAAAT-AATAAT
1 AAAATAA-T---ATCAATAAG
*
15855684 AAAATAATAACAA-AAG
1 AAAATAATATCAATAAG
15855700 AAAATAA
1 AAAATAA
15855707 AGGAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
16 10 0.29
17 9 0.26
18 1 0.03
19 1 0.03
20 12 0.34
21 2 0.06
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (17 bp):
AAAATAATATCAATAAG
Found at i:15867211 original size:20 final size:19
Alignment explanation
Indices: 15867183--15867228 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
15867173 AATTAGAATG
15867183 AAAAAATT-AAATTCAAAAC
1 AAAAAATTAAAATT-AAAAC
*
15867202 AAAAATATTAAAATTAAAAT
1 AAAAA-ATTAAAATTAAAAC
15867222 AAAAAAT
1 AAAAAAT
15867229 GGCTAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 12 0.50
21 5 0.21
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAAATTAAAATTAAAAC
Found at i:15870122 original size:37 final size:37
Alignment explanation
Indices: 15870061--15870139 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
15870051 TTATTACGAA
* *
15870061 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
* *
15870098 GTCTTACCCGGATAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGAAGTCATCGG
15870135 GTCTT
1 GTCTT
15870140 TAGATCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:15870336 original size:47 final size:47
Alignment explanation
Indices: 15870258--15870891 Score: 1038
Period size: 47 Copynumber: 13.4 Consensus size: 47
15870248 CCCTTCGGGA
* * * * * * *
15870258 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15870305 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15870352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870398 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870445 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870492 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870541 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15870588 CTTATCACATATATACACTTTCACATTCATC-CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870634 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870683 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870732 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15870779 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15870826 CTTATCACATATATACACTTTCACATTCATTACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15870873 CTTATCACATATATACACT
1 CTTATCACATATATACACT
15870892 GTCTTGGCTG
Statistics
Matches: 556, Mismatches: 25, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 66 0.12
47 351 0.63
48 23 0.04
49 116 0.21
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15870789 original size:238 final size:236
Alignment explanation
Indices: 15870258--15870887 Score: 1023
Period size: 238 Copynumber: 2.7 Consensus size: 236
15870248 CCCTTCGGGA
* * * * * * * * *
15870258 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
15870323 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC-CATC
*
15870388 GGCCA-TAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
130 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
15870450 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
195 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870492 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
15870557 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCCAT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCCAT
* *
15870622 CGGCCATTAGGCTTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTA
129 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
15870687 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 TCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870732 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
15870797 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATTACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA-TCCATC
*
15870862 GGCTATTAGGCCTTATCACATATATA
130 GGCCATTAGGCCTTATCACATATATA
15870888 CACTGTCTTG
Statistics
Matches: 367, Mismatches: 21, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
234 7 0.02
235 9 0.02
236 119 0.32
238 158 0.43
239 29 0.08
240 45 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (236 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCCATCG
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15870931 original size:191 final size:190
Alignment explanation
Indices: 15870258--15870887 Score: 1061
Period size: 191 Copynumber: 3.3 Consensus size: 190
15870248 CCCTTCGGGA
* * * * * * * ** *
15870258 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATATAC
15870321 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
15870386 TCGGCCA-TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870445 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATATAC
15870510 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
15870575 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC-CATCGGCCATTAGGC
131 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15870634 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATAT
15870699 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
15870764 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15870826 CTTATCACATATATACACTTTCACATTCATTACATCGGCTATTAGGCCTTATCACATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATA
15870888 CACTGTCTTG
Statistics
Matches: 418, Mismatches: 19, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
187 44 0.11
189 100 0.24
190 87 0.21
191 165 0.39
192 22 0.05
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15878879 original size:14 final size:14
Alignment explanation
Indices: 15878860--15878912 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
15878850 CAAAAATAAC
*
15878860 AAAAATAACAAAAT
1 AAAAATAAAAAAAT
15878874 AAAAATAAAAAAAAT
1 AAAAAT-AAAAAAAT
* * *
15878889 AAAATTTATAAAAT
1 AAAAATAAAAAAAT
15878903 AAAAATAAAA
1 AAAAATAAAA
15878913 TTATAAACAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:15878908 original size:20 final size:20
Alignment explanation
Indices: 15878883--15878924 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
15878873 TAAAAATAAA
15878883 AAAAATAAAATTTATAAA-AT
1 AAAAATAAAA-TTATAAACAT
15878903 AAAAATAAAATTATAAACAT
1 AAAAATAAAATTATAAACAT
15878923 AA
1 AA
15878925 TATACTAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAAATAAAATTATAAACAT
Found at i:15879233 original size:3 final size:3
Alignment explanation
Indices: 15879225--15879272 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
15879215 TGCGGTAAGT
*
15879225 ATA ATA ATA A-A ATA TATA AT- ATA ACA ATA ATA ATA A-A ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15879268 ATA AT
1 ATA AT
15879273 TCAGTAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:15879268 original size:11 final size:11
Alignment explanation
Indices: 15879225--15879271 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 11
15879215 TGCGGTAAGT
15879225 ATAATAATAAA
1 ATAATAATAAA
15879236 ATATATAATATAACA
1 ATA-AT-A-ATAA-A
15879251 ATAATAATAAA
1 ATAATAATAAA
15879262 ATAATAATAA
1 ATAATAATAA
15879272 TTCAGTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 14 0.44
12 6 0.19
13 2 0.06
14 6 0.19
15 4 0.12
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (11 bp):
ATAATAATAAA
Done.