Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 53 of 218
Found at i:16174583 original size:18 final size:19
Alignment explanation
Indices: 16174556--16174594 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
16174546 TCATGTCAAC
*
16174556 AAATAATTTAA-AATTAAA
1 AAATAATTTAAGAAATAAA
*
16174574 AAATATTTTAAGAAATAAA
1 AAATAATTTAAGAAATAAA
16174593 AA
1 AA
16174595 TAAAAATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
AAATAATTTAAGAAATAAA
Found at i:16174617 original size:25 final size:25
Alignment explanation
Indices: 16174563--16174624 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
16174553 AACAAATAAT
* ** *
16174563 TTAAAATTAAAAAATATTTTAAGAAA
1 TTAAAAAT-AAAAATATCATAAAAAA
16174589 -TAAAAATAAAAATATCATAAAAAA
1 TTAAAAATAAAAATATCATAAAAAA
16174613 TTAAAAATAAAA
1 TTAAAAATAAAA
16174625 CAAGCACATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (25 bp):
TTAAAAATAAAAATATCATAAAAAA
Found at i:16176730 original size:28 final size:28
Alignment explanation
Indices: 16176698--16176761 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
16176688 TTATTTTAAT
*
16176698 TTTTTTAATTTTTA-ACTTTTTATAT-A
1 TTTTTTAATTTTTATACTTTTTAAATAA
*
16176724 TTCTTTTGAATTTTTATATTTTTTAAATAA
1 TT-TTTT-AATTTTTATACTTTTTAAATAA
16176754 TTTTTTAA
1 TTTTTTAA
16176762 AGCTTTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 2 0.06
27 4 0.12
28 10 0.31
29 13 0.41
30 3 0.09
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTTTAATTTTTATACTTTTTAAATAA
Found at i:16176919 original size:18 final size:18
Alignment explanation
Indices: 16176884--16176919 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16176874 ACACCAATTT
*
16176884 ATTATTTGAGTTAATCGA
1 ATTATTTGAATTAATCGA
*
16176902 ATTATTTGAATTATTCGA
1 ATTATTTGAATTAATCGA
16176920 GTTGTCAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (18 bp):
ATTATTTGAATTAATCGA
Found at i:16178254 original size:29 final size:28
Alignment explanation
Indices: 16178212--16178267 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
16178202 CAATAATTTT
*
16178212 TATAATTTCTTTCT-ATTTTTATAATATG
1 TATAATTTCTTTCTGAATTTT-TAATATG
*
16178240 TATACATTTTTTTCTGAATTTTTAATAT
1 TATA-ATTTCTTTCTGAATTTTTAATAT
16178268 ATTTATTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 15 0.62
30 5 0.21
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.61
Consensus pattern (28 bp):
TATAATTTCTTTCTGAATTTTTAATATG
Found at i:16179666 original size:13 final size:13
Alignment explanation
Indices: 16179643--16179677 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
16179633 AGAAAATGGG
16179643 GGTTTTT-GTTTT
1 GGTTTTTGGTTTT
*
16179655 TGTTTTTGGTTTT
1 GGTTTTTGGTTTT
16179668 GGTTTTTGGT
1 GGTTTTTGGT
16179678 GAGAAGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (13 bp):
GGTTTTTGGTTTT
Found at i:16184296 original size:9 final size:9
Alignment explanation
Indices: 16184279--16184315 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
16184269 TGAGTTTTCG
16184279 AATTCGAAT
1 AATTCGAAT
*
16184288 AACTCGAAT
1 AATTCGAAT
16184297 AATTCGAAT
1 AATTCGAAT
16184306 AATTCGAAT
1 AATTCGAAT
16184315 A
1 A
16184316 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:16184563 original size:30 final size:31
Alignment explanation
Indices: 16184529--16184588 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
16184519 AAACCTTTTA
*
16184529 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
16184559 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
16184589 TCTCATCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:16186278 original size:44 final size:46
Alignment explanation
Indices: 16186223--16186315 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 46
16186213 TACAACATCT
* * *
16186223 ATTCTATTCAACCAAACAAAAGAA-TGCT-ATTACAGTTCTATTTC
1 ATTCCATTCAACCAAACAAAAGAATTACTGATTACAGTTCTATTCC
**
16186267 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACTGATTACAGTTCTATTCC
16186313 ATT
1 ATT
16186316 ACAGCTCTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 21 0.50
45 3 0.07
46 18 0.43
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACTGATTACAGTTCTATTCC
Found at i:16186318 original size:16 final size:16
Alignment explanation
Indices: 16186297--16186351 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
16186287 TGAATTACTG
*
16186297 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
16186313 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
16186329 ATTAGAGCTCTATTCC
1 ATTACAGCTCTATTCC
16186345 ATTACAG
1 ATTACAG
16186352 TGAATCAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:16190050 original size:13 final size:13
Alignment explanation
Indices: 16190032--16190103 Score: 90
Period size: 13 Copynumber: 5.5 Consensus size: 13
16190022 AATGCATTTG
16190032 AAAAGTGCTTTTA
1 AAAAGTGCTTTTA
16190045 AAAAGTGCTTTTTA
1 AAAAGTGC-TTTTA
* **
16190059 AAAAGTGCTGTGC
1 AAAAGTGCTTTTA
16190072 AAAAGTGCTTTTA
1 AAAAGTGCTTTTA
* *
16190085 AGAAGTACTTTTA
1 AAAAGTGCTTTTA
16190098 AAAAGT
1 AAAAGT
16190104 TTAGTTTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
13 36 0.73
14 13 0.27
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (13 bp):
AAAAGTGCTTTTA
Found at i:16192340 original size:27 final size:26
Alignment explanation
Indices: 16192309--16192378 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 26
16192299 ACAAGAAACC
* * *
16192309 ATCAAAATTTTACAATTAAAATTTAAA
1 ATCAAAATTTTAAAACT-AAACTTAAA
16192336 ATCAAAATTTATAAAACTAAACTTAAA
1 ATCAAAATTT-TAAAACTAAACTTAAA
* *
16192363 ACCAAAATTTTTAAAC
1 ATCAAAATTTTAAAAC
16192379 ATGTATCACG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.14
27 27 0.73
28 5 0.14
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (26 bp):
ATCAAAATTTTAAAACTAAACTTAAA
Found at i:16192342 original size:13 final size:13
Alignment explanation
Indices: 16192309--16192372 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
16192299 ACAAGAAACC
*
16192309 ATCAAAATTTTACA
1 ATCAAAA-TTTAAA
*
16192323 ATTAAAATTTAAA
1 ATCAAAATTTAAA
16192336 ATCAAAATTTATAA
1 ATCAAAATTTA-AA
* * *
16192350 AACTAAACTTAAA
1 ATCAAAATTTAAA
*
16192363 ACCAAAATTT
1 ATCAAAATTT
16192373 TTAAACATGT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
13 24 0.60
14 16 0.40
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (13 bp):
ATCAAAATTTAAA
Found at i:16196890 original size:63 final size:62
Alignment explanation
Indices: 16196753--16196890 Score: 134
Period size: 63 Copynumber: 2.2 Consensus size: 62
16196743 TATCCTTGAA
* * * * * * **
16196753 GAAGGTGTTGATGCAAGGAATGATTGGCGTGCTGTGGTGCTTGTGTAAAATAAACTGGTGCT
1 GAAGGTGATGATGCAAAGAATGATTGACATGCTGTGATGCTTGTGTAAAATAAACCGGAACT
* * * * *
16196815 GAATGT-ATTGATGCAAAGAATGATTGTATATGTTGTGATGGTTGTGTAAAATGAACCGGAACT
1 GAAGGTGA-TGATGCAAAGAATGATTG-ACATGCTGTGATGCTTGTGTAAAATAAACCGGAACT
16196878 GAAGGTGATGATG
1 GAAGGTGATGATG
16196891 TAGGGACTGA
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
62 22 0.37
63 36 0.61
64 1 0.02
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (62 bp):
GAAGGTGATGATGCAAAGAATGATTGACATGCTGTGATGCTTGTGTAAAATAAACCGGAACT
Found at i:16206186 original size:17 final size:17
Alignment explanation
Indices: 16206164--16206196 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16206154 ATGGAATGTC
16206164 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
16206181 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
16206197 AAATCTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:16210807 original size:17 final size:17
Alignment explanation
Indices: 16210785--16210817 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16210775 ATGGAATGTC
16210785 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
16210802 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
16210818 AAATCTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:16213399 original size:17 final size:16
Alignment explanation
Indices: 16213375--16213406 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
16213365 TATATAAACA
16213375 TAAAAAAATAATAATC
1 TAAAAAAATAATAATC
16213391 TAAACAAAATAATAAT
1 TAAA-AAAATAATAAT
16213407 TAACTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (16 bp):
TAAAAAAATAATAATC
Found at i:16213542 original size:15 final size:15
Alignment explanation
Indices: 16213519--16213553 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
16213509 ATAATTATAA
16213519 TGAAAAGAATAAAAT
1 TGAAAAGAATAAAAT
*
16213534 TGAAGAGAATAAAAT
1 TGAAAAGAATAAAAT
16213549 T-AAAA
1 TGAAAA
16213554 AAAAAAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.20
Consensus pattern (15 bp):
TGAAAAGAATAAAAT
Found at i:16213656 original size:14 final size:15
Alignment explanation
Indices: 16213639--16213670 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
16213629 AAAATCTAAA
16213639 ATTGGAA-ATTGAGG
1 ATTGGAAGATTGAGG
16213653 ATT-GAAGATTGAGG
1 ATTGGAAGATTGAGG
16213667 ATTG
1 ATTG
16213671 AGAATTTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.19
14 13 0.81
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (15 bp):
ATTGGAAGATTGAGG
Found at i:16213681 original size:14 final size:13
Alignment explanation
Indices: 16213643--16213681 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
16213633 TCTAAAATTG
16213643 GAAATTGAGGATT
1 GAAATTGAGGATT
16213656 GAAGATTGAGGATT
1 GAA-ATTGAGGATT
*
16213670 GAGAATTTAGGA
1 GA-AATTGAGGA
16213682 AGGAAGAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 3 0.13
14 19 0.83
15 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.28
Consensus pattern (13 bp):
GAAATTGAGGATT
Found at i:16214721 original size:35 final size:35
Alignment explanation
Indices: 16214682--16214752 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
16214672 ATATATGTGA
16214682 TTTTATATTTTTTCTAACATAATATACATGGGATG
1 TTTTATATTTTTTCTAACATAATATACATGGGATG
16214717 TTTTATATTTTTTCTAACATAATATACATGGGATG
1 TTTTATATTTTTTCTAACATAATATACATGGGATG
16214752 T
1 T
16214753 GGATTGAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.49
Consensus pattern (35 bp):
TTTTATATTTTTTCTAACATAATATACATGGGATG
Found at i:16218098 original size:29 final size:29
Alignment explanation
Indices: 16218037--16218099 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
16218027 AAAAAACCCG
**
16218037 TTTTTTCAATATTTACCGAAATGGGTCGG
1 TTTTTTCAATATTTACCGAAATGGGTCCA
* *
16218066 TTTTTTTAATTATTTACCGGAATGGG-CCA
1 TTTTTTCAA-TATTTACCGAAATGGGTCCA
16218095 TTTTT
1 TTTTT
16218100 CGCGAAATCG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (29 bp):
TTTTTTCAATATTTACCGAAATGGGTCCA
Found at i:16218748 original size:11 final size:12
Alignment explanation
Indices: 16218728--16218752 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16218718 TTGAAATTTA
16218728 GGGGCAAAAAAG
1 GGGGCAAAAAAG
16218740 GGGGCAAAAAAG
1 GGGGCAAAAAAG
16218752 G
1 G
16218753 ATATTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.44, T:0.00
Consensus pattern (12 bp):
GGGGCAAAAAAG
Found at i:16219086 original size:29 final size:29
Alignment explanation
Indices: 16219045--16219100 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
16219035 CGCGGAAAAT
*
16219045 GGCCTATTCCGGTAAATAATT-AAAAAACC
1 GGCCCATTCCGGTAAAT-ATTGAAAAAACC
*
16219074 GGCCCATTTCGGTAAATATTGAAAAAA
1 GGCCCATTCCGGTAAATATTGAAAAAA
16219101 AGGGATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (29 bp):
GGCCCATTCCGGTAAATATTGAAAAAACC
Found at i:16228356 original size:25 final size:25
Alignment explanation
Indices: 16228328--16228380 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
16228318 ACTAATCGAT
* * *
16228328 GAGCACTGACGTGCTAATAATTAGA
1 GAGCACTAACGTGCTAAAAATGAGA
* *
16228353 GAGCAGTAATGTGCTAAAAATGAGA
1 GAGCACTAACGTGCTAAAAATGAGA
16228378 GAG
1 GAG
16228381 TGCGCTAAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.21
Consensus pattern (25 bp):
GAGCACTAACGTGCTAAAAATGAGA
Found at i:16232025 original size:31 final size:31
Alignment explanation
Indices: 16231966--16232022 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
16231956 ATAATATCTT
*
16231966 TTAATAAAATAAAAGGATCTATATAATAAGA
1 TTAAAAAAATAAAAGGATCTATATAATAAGA
16231997 TTAAAAAAATAAAA-GA-CTA-ATAATAA
1 TTAAAAAAATAAAAGGATCTATATAATAA
16232023 TAATAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 7 0.28
29 3 0.12
30 2 0.08
31 13 0.52
ACGTcount: A:0.63, C:0.04, G:0.07, T:0.26
Consensus pattern (31 bp):
TTAAAAAAATAAAAGGATCTATATAATAAGA
Found at i:16232049 original size:16 final size:15
Alignment explanation
Indices: 16232015--16232060 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
16232005 ATAAAAGACT
* *
16232015 AATAATAATAATAAT
1 AATAATAACAATAAA
*
16232030 AATAATGACCAATAAA
1 AATAAT-AACAATAAA
16232046 AATAATAACAATAAA
1 AATAATAACAATAAA
16232061 TCAATTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 14 0.54
16 12 0.46
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (15 bp):
AATAATAACAATAAA
Found at i:16233945 original size:131 final size:131
Alignment explanation
Indices: 16233774--16234202 Score: 447
Period size: 131 Copynumber: 3.3 Consensus size: 131
16233764 TATCTGTCGT
* * * * *
16233774 TTTTCCAACCTACTCCACTACTGATCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACT
1 TTTT-CAACCTATTCCACTGCCGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACT
* * *
16233839 CCAGGGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATGAGATCTGT
65 CCAGGGGAAGATAAGATTCGCCATCTTCGATTTGCTCAACTACTGCTTAGGGAGATAAGATCTGT
16233904 AA
130 AA
16233906 TTTTCAACCTATTCCACTGCCGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTC
1 TTTTCAACCTATTCCACTGCCGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTC
* * * * * *** *
16233971 CTGGGAAAGATGAGATTCGCCATCTTTGATCTGCTCTGTTACTGCTTAGGGAGATAAGATATGTA
66 CAGGGGAAGATAAGATTCGCCATCTTCGATTTGCTCAACTACTGCTTAGGGAGATAAGATCTGTA
16234036 A
131 A
* * * * * *
16234037 -TTTCTAACCTATTCCACTGCTGACCAGGGAGAT-AGAATTATTGGCTTCAATGTAC-TCCACTA
1 TTTTC-AACCTATTCCACTGCCGACCAGGGAGATAAGACTT-GTGGCTTAAATCTGCTTCC-CTA
* * * * * * *
16234099 -TAACCATAGGG-AGGTAAAATCCGTCATCTTCAATTTGCTCAACTACTACTTAGGGAGATAAGA
63 CT--CCA-GGGGAAGATAAGATTCGCCATCTTCGATTTGCTCAACTACTGCTTAGGGAGATAAGA
*
16234162 TCTATAA
125 TCTGTAA
* *
16234169 TCTTT-AATCTATTCCACTGCCAACCAGGGAGATA
1 T-TTTCAACCTATTCCACTGCCGACCAGGGAGATA
16234203 GAATTACTGG
Statistics
Matches: 246, Mismatches: 42, Indels: 17
0.81 0.14 0.06
Matches are distributed among these distances:
130 13 0.05
131 152 0.62
132 76 0.31
133 2 0.01
134 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (131 bp):
TTTTCAACCTATTCCACTGCCGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTC
CAGGGGAAGATAAGATTCGCCATCTTCGATTTGCTCAACTACTGCTTAGGGAGATAAGATCTGTA
A
Found at i:16234241 original size:44 final size:44
Alignment explanation
Indices: 16234168--16234771 Score: 198
Period size: 44 Copynumber: 13.8 Consensus size: 44
16234158 AAGATCTATA
* * *
16234168 ATCTTTAATCTATTCCACTGCCAA-C-CAGGGAGATAGAATTACT
1 ATCTTCAATCTACTCCACTG-TAACCTCAGGGAGATAGAATTACT
** * * * **
16234211 GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTTGT
1 ATCTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATTACT
* * * *
16234255 CATCTTCAATCTACTCCAC--T-ACTGCTTAGGAAGACTAGATTTGCT
1 -ATCTTCAATCTACTCCACTGTAAC--CTCAGGGAGA-TAGAATTACT
* * ** * *
16234300 ATCTTTAATCTATTCCACTACCAA-C-CAAGAAGATAGAATTACT
1 ATCTTCAATCTACTCCACT-GTAACCTCAGGGAGATAGAATTACT
** * * * * * *
16234343 GGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAAT-TACT
* * *
16234388 ATCTTCGATCTACTCCAC--T-ACTGCTTAGGGAGACTAG-ATCTACA
1 ATCTTCAATCTACTCCACTGTAAC--CTCAGGGAGA-TAGAAT-TACT
* * *
16234432 ATCTTTAATCTATTCCACTGCCAA-C-CAGGGAGATAGAATTACT
1 ATCTTCAATCTACTCCACTG-TAACCTCAGGGAGATAGAATTACT
** * * * * * *
16234475 GGCTTCAATGTACTCCACTGTACCCTCAGGGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAAT-TACT
* * * *
16234520 ATCTTCGATCTACTCCAC--T-ACTTCTTAGGGAGATA-AAATATGT
1 ATCTTCAATCTACTCCACTGTAAC--CTCAGGGAGATAGAATTA-CT
* * *
16234563 AATCTTCAATCTATTCCACTGCT-GCC-CAGAGAGATAGAATTACT
1 -ATCTTCAATCTACTCCACTG-TAACCTCAGGGAGATAGAATTACT
** * * * * * * * *
16234607 GGCTTCAATGTACTCCACTGTAATCACAGAGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAAT-TACT
* * *
16234652 ATCTTCGATCTACTCCAC--T-ACTGCTTAGGGAGATA-AGATCT-GT
1 ATCTTCAATCTACTCCACTGTAAC--CTCAGGGAGATAGA-AT-TACT
* * *
16234695 AATCTTTAATCTATTCCACTGCT-GCCT-AGGGAGATAGAATTACT
1 -ATCTTCAATCTACTCCACTG-TAACCTCAGGGAGATAGAATTACT
* *
16234739 AGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATCTTCAATCTACTCCACTGTAACCTCAGGGAG
16234772 GTAAACTCCA
Statistics
Matches: 400, Mismatches: 115, Indels: 91
0.66 0.19 0.15
Matches are distributed among these distances:
42 14 0.04
43 105 0.26
44 194 0.49
45 81 0.20
47 4 0.01
48 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATTACT
Found at i:16235182 original size:132 final size:132
Alignment explanation
Indices: 16233862--16235175 Score: 1544
Period size: 132 Copynumber: 10.0 Consensus size: 132
16233852 AGATTCGCCG
* * * * * *
16233862 TCTTCGATTTGCTCCACTACTGCTTAGGGAGATGAGATCTGTAATTTTCAACCTATTCCACTGCC
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * * * * * * * *
16233927 GACCAGGGAGATAAGACTT-GTGGCTTAAATCTGCTTCC-C--T-A-CTCCTGGGAAAGATGAGA
66 GACCAGGGAGAT-AGAATTACTGGCTTCAATGTAC-TCCACTGTAACCT-CAGGG--AGGTAAAA
16233986 T-TCGCCA
126 TCT-GCCA
* * *** * *
16233993 TCTTTGATCTGCTCTGTTACTGCTTAGGGAGATAAGATATGTAAT-TTCTAACCTATTCCACTGC
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-AATCTATTCCACTGC
* * *
16234057 TGACCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTATAACCAT-AGGGAGGTAAAATCC
65 TGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACC-TCAGGGAGGTAAAATCT
*
16234121 GTCA
129 GCCA
* * * * * * * *
16234125 TCTTCAATTTGCTCAACTACTACTTAGGGAGATAAGATCTATAATCTTTAATCTATTCCACTGCC
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * *
16234190 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTTGT
66 GACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
16234255 CA
131 CA
* * * * *
16234257 TCTTCAATCTACTCCACTACTGCTTAGGAAGACT-AGATTTGCT-ATCTTTAATCTATTCCACTA
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGA-TAAGATCTG-TAATCTTCAATCTATTCCACTG
** * * *
16234320 CCAACCAAGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATCT
64 CTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCT
16234385 GCCA
129 GCCA
** *
16234389 TCTTCGATCTACTCCACTACTGCTTAGGGAGACT-AGATCTACAATCTTTAATCTATTCCACTGC
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGA-TAAGATCTGTAATCTTCAATCTATTCCACTGC
** *
16234453 CAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTACCCTCAGGGAGGTAAAATCTG
65 TGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTG
16234518 CCA
130 CCA
* * *
16234521 TCTTCGATCTACTCCACTACTTCTTAGGGAGATAAAATATGTAATCTTCAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * * * *
16234586 GCCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGAGAGGTAAAATCTGC
66 GACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
16234651 CA
131 CA
*
16234653 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * **
16234718 G-CCTAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAACTCCA
66 GACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTG
16234782 CCA
130 CCA
* * *
16234785 TCTTCGATCTACTCCATTATTGCTTAGAGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * * * * * *
16234850 GCCCAGGTAGATAAAACTACTGGCTTCAATGTACTCCACTGTAATCAT-AAGGAGGTAAAATCCG
66 GACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA-CCTCAGGGAGGTAAAATCTG
16234914 CCA
130 CCA
* * * * **
16234917 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTTCA-TTAT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * * * *
16234981 CGACCAAGGAGATAAAATTACTGGTTTCAATGTATTCCACTATAACCTCAGGGAGGTAAAATCTG
66 -GACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTG
16235046 CCA
130 CCA
* *
16235049 TCTTTGATCTACTCCACTACCGCTTAGGGAGATAAGATCCT-TAATCTTCAATCTATTCCACTGC
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGAT-CTGTAATCTTCAATCTATTCCACTGC
* * * *
16235113 TGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCTACTATAGCCTCAGGGAGGTAAAATC
65 TGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
16235176 CACCATCAAC
Statistics
Matches: 1030, Mismatches: 131, Indels: 43
0.86 0.11 0.04
Matches are distributed among these distances:
130 11 0.01
131 85 0.08
132 915 0.89
133 13 0.01
134 4 0.00
135 1 0.00
136 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
CA
Found at i:16236509 original size:7 final size:7
Alignment explanation
Indices: 16236499--16236528 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
16236489 CCCCTTTTAC
16236499 TTTTTCA
1 TTTTTCA
16236506 TTTTTCA
1 TTTTTCA
16236513 TTTTTCA
1 TTTTTCA
16236520 -TTTTCA
1 TTTTTCA
16236526 TTT
1 TTT
16236529 CATTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCA
Found at i:16236510 original size:14 final size:14
Alignment explanation
Indices: 16236499--16236528 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
16236489 CCCCTTTTAC
16236499 TTTTTCATTTTTCA
1 TTTTTCATTTTTCA
16236513 TTTTTCA-TTTTCA
1 TTTTTCATTTTTCA
16236526 TTT
1 TTT
16236529 CATTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTTCATTTTTCA
Found at i:16237461 original size:15 final size:15
Alignment explanation
Indices: 16237437--16237475 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
16237427 TTCTCTTCTT
*
16237437 TTTTGATTTTT-TGA
1 TTTTGATTTTTATTA
16237451 TTTTGATTTTTATTA
1 TTTTGATTTTTATTA
*
16237466 TTTTTATTTT
1 TTTTGATTTT
16237476 GAATTCATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (15 bp):
TTTTGATTTTTATTA
Found at i:16237469 original size:21 final size:21
Alignment explanation
Indices: 16237436--16237477 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
16237426 TTTCTCTTCT
16237436 TTTTTGATTTTTTGATTTTGA
1 TTTTTGATTTTTTGATTTTGA
*
16237457 TTTTT-ATTATTTTTATTTTGA
1 TTTTTGATT-TTTTGATTTTGA
16237478 ATTCATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.74
Consensus pattern (21 bp):
TTTTTGATTTTTTGATTTTGA
Found at i:16238280 original size:25 final size:25
Alignment explanation
Indices: 16238230--16238288 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
16238220 AAGAAAGTCC
*
16238230 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
*
16238255 AAAAGAATGAAAGAA-CATTAGCTCA
1 AAAAGAATGAAAGAATAATTA-CTCA
16238280 AAAATGAAT
1 AAAA-GAAT
16238289 ACAAAGATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 4 0.13
25 22 0.73
26 4 0.13
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:16238546 original size:79 final size:79
Alignment explanation
Indices: 16238415--16238566 Score: 286
Period size: 79 Copynumber: 1.9 Consensus size: 79
16238405 GCTCTAAAAT
* *
16238415 CTACAGGCATTTCTTCTACAGTCCAATTGTTTTGAACACTCCCAAATTTATAATGGCAGATATTT
1 CTACAGGCATTTCTTCTACAGTCCAATTGCTTTGAACACTCCCAAATTTATAAGGGCAGATATTT
16238480 AACAAGGTTTAGAG
66 AACAAGGTTTAGAG
16238494 CTACAGGCATTTCTTCTACAGTCCAATTGCTTTGAACACTCCCAAATTTATAAGGGCAGATATTT
1 CTACAGGCATTTCTTCTACAGTCCAATTGCTTTGAACACTCCCAAATTTATAAGGGCAGATATTT
16238559 AACAAGGT
66 AACAAGGT
16238567 CCCTTTTAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 71 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (79 bp):
CTACAGGCATTTCTTCTACAGTCCAATTGCTTTGAACACTCCCAAATTTATAAGGGCAGATATTT
AACAAGGTTTAGAG
Found at i:16239328 original size:7 final size:7
Alignment explanation
Indices: 16239316--16239354 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
16239306 AAGAAGAAAT
16239316 AAAATTA
1 AAAATTA
16239323 AAAATTA
1 AAAATTA
16239330 AAAATTA
1 AAAATTA
16239337 AAAATTA
1 AAAATTA
16239344 AAAATTA
1 AAAATTA
16239351 AAAA
1 AAAA
16239355 CTATACTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAATTA
Found at i:16239537 original size:59 final size:59
Alignment explanation
Indices: 16239445--16239576 Score: 246
Period size: 59 Copynumber: 2.2 Consensus size: 59
16239435 CCAAAAATGA
* *
16239445 AGAAAAAAAGAAAACCAAAATATGAACTTTGGAAAAGAAACTAACGTTTTAGTAAAAAG
1 AGAAATAAAGAAAACCAAAATATGAACTTTGGAAAAGAAACTAACGTTTGAGTAAAAAG
16239504 AGAAATAAAGAAAACCAAAATATGAACTTTGGAAAAGAAACTAACGTTTGAGTAAAAAG
1 AGAAATAAAGAAAACCAAAATATGAACTTTGGAAAAGAAACTAACGTTTGAGTAAAAAG
16239563 AGAAATAAAGAAAA
1 AGAAATAAAGAAAA
16239577 AAAATAAAAG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 71 1.00
ACGTcount: A:0.59, C:0.08, G:0.16, T:0.17
Consensus pattern (59 bp):
AGAAATAAAGAAAACCAAAATATGAACTTTGGAAAAGAAACTAACGTTTGAGTAAAAAG
Found at i:16241947 original size:29 final size:29
Alignment explanation
Indices: 16241899--16241955 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
16241889 CTTGCTAAGT
*
16241899 TTTAAATTTAGTTCTGAATTTAAGTTTTC
1 TTTAAATTTAGTTCTAAATTTAAGTTTTC
* *
16241928 TTTAATTTTAGTTTTAAATTTAAGTTTT
1 TTTAAATTTAGTTCTAAATTTAAGTTTT
16241956 TTAAAAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.60
Consensus pattern (29 bp):
TTTAAATTTAGTTCTAAATTTAAGTTTTC
Found at i:16241949 original size:12 final size:13
Alignment explanation
Indices: 16241894--16241955 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
16241884 TTTTTCTTGC
16241894 TAAGTTTTAAATT
1 TAAGTTTTAAATT
* *
16241907 T-AGTTCTGAATT
1 TAAGTTTTAAATT
*
16241919 TAAGTTTTCTTTAATT
1 TAAG--TT-TTAAATT
*
16241935 TTAGTTTTAAATT
1 TAAGTTTTAAATT
16241948 TAAGTTTT
1 TAAGTTTT
16241956 TTAAAAATCT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
12 10 0.26
13 16 0.42
14 2 0.05
15 2 0.05
16 8 0.21
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (13 bp):
TAAGTTTTAAATT
Found at i:16248679 original size:27 final size:25
Alignment explanation
Indices: 16248649--16248698 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
16248639 TTTAATGTAG
16248649 ATATTAATTAAATTTGGATTTCAAAGC
1 ATATTAA-TAAATTTGGA-TTCAAAGC
* *
16248676 ATATTTATGAATTTGGATTCAAA
1 ATATTAATAAATTTGGATTCAAA
16248699 ATTTCAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 9 0.43
27 6 0.29
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (25 bp):
ATATTAATAAATTTGGATTCAAAGC
Found at i:16252842 original size:29 final size:29
Alignment explanation
Indices: 16252802--16252878 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
16252792 TTTTTCTCGG
* * * *
16252802 GTTACATTTTAGACACTTATGTTTGAAAT
1 GTTACGTTTTAGTCACTTATATTTAAAAT
*
16252831 GTTATGTTTTAGTCACTTATATTTAAAAT
1 GTTACGTTTTAGTCACTTATATTTAAAAT
16252860 GTTACGTTTTAGTCACTTA
1 GTTACGTTTTAGTCACTTA
16252879 CGTTATCGTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (29 bp):
GTTACGTTTTAGTCACTTATATTTAAAAT
Found at i:16254147 original size:18 final size:18
Alignment explanation
Indices: 16254102--16254136 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16254092 GGCCCAACCC
*
16254102 ATATTAAATATATATTTA
1 ATATAAAATATATATTTA
*
16254120 ATATATAATATATATTT
1 ATATAAAATATATATTT
16254137 GATTAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATAAAATATATATTTA
Found at i:16255643 original size:2 final size:2
Alignment explanation
Indices: 16255636--16255662 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
16255626 TCAAAATCCG
16255636 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
16255663 GGATTTCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16255857 original size:18 final size:18
Alignment explanation
Indices: 16255834--16255871 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
16255824 GTTTCTGTCC
16255834 TTATA-TTACATTTAAATT
1 TTATATTTA-ATTTAAATT
*
16255852 TTATATTTAATTTATATT
1 TTATATTTAATTTAAATT
16255870 TT
1 TT
16255872 TTAATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATATTTAATTTAAATT
Found at i:16256243 original size:9 final size:9
Alignment explanation
Indices: 16256228--16256283 Score: 58
Period size: 9 Copynumber: 6.0 Consensus size: 9
16256218 ATTCACATTC
16256228 TTCTCTCAA
1 TTCTCTCAA
*
16256237 CTCTCTCAA
1 TTCTCTCAA
*
16256246 TTCTTTCAAA
1 TTCTCTC-AA
16256256 TTCTCTCAAA
1 TTCTCTC-AA
*
16256266 TCCTCTCAA
1 TTCTCTCAA
*
16256275 GTCTCTCAA
1 TTCTCTCAA
16256284 GTATCTAGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
9 22 0.56
10 17 0.44
ACGTcount: A:0.25, C:0.34, G:0.02, T:0.39
Consensus pattern (9 bp):
TTCTCTCAA
Found at i:16256279 original size:19 final size:19
Alignment explanation
Indices: 16256230--16256283 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
16256220 TCACATTCTT
*
16256230 CTCTCAACTCTCTC-AATT
1 CTCTCAACTCTCTCAAATC
* *
16256248 CTTTCAAATTCTCTCAAATC
1 CTCTC-AACTCTCTCAAATC
*
16256268 CTCTCAAGTCTCTCAA
1 CTCTCAACTCTCTCAA
16256284 GTATCTAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 4 0.14
19 18 0.62
20 7 0.24
ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37
Consensus pattern (19 bp):
CTCTCAACTCTCTCAAATC
Found at i:16259478 original size:3 final size:3
Alignment explanation
Indices: 16259470--16259525 Score: 103
Period size: 3 Copynumber: 18.3 Consensus size: 3
16259460 GTTGAGTGAT
16259470 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
16259518 GAAA GAA G
1 G-AA GAA G
16259526 GAAAAAAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:16260193 original size:25 final size:27
Alignment explanation
Indices: 16260161--16260227 Score: 86
Period size: 25 Copynumber: 2.6 Consensus size: 27
16260151 AGATTCTTTG
*
16260161 AAGCTAGTGTTAGCAGAATC-GAACCA
1 AAGCTAGTGTTAGCAGAACCTGAACCA
* *
16260187 AA-CTAGTGTTAGCA-ACCCTGATCCA
1 AAGCTAGTGTTAGCAGAACCTGAACCA
16260212 AAGCTAGTGTTAGCAG
1 AAGCTAGTGTTAGCAG
16260228 CCCGATAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 2 0.06
25 19 0.54
26 14 0.40
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
AAGCTAGTGTTAGCAGAACCTGAACCA
Found at i:16266066 original size:46 final size:46
Alignment explanation
Indices: 16265999--16266092 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
16265989 GTGTTGAAAG
16265999 TAAGAATTTATTAGATCAATTCTATAACACTTATGACTAAGCGATA
1 TAAGAATTTATTAGATCAATTCTATAACACTTATGACTAAGCGATA
* *
16266045 TAAGAATTTATTAGATCAATTCTATATCACTTATGACTAAGTGATA
1 TAAGAATTTATTAGATCAATTCTATAACACTTATGACTAAGCGATA
16266091 TA
1 TA
16266093 CTTATTTCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (46 bp):
TAAGAATTTATTAGATCAATTCTATAACACTTATGACTAAGCGATA
Found at i:16267118 original size:21 final size:20
Alignment explanation
Indices: 16267085--16267128 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
16267075 TTATTTATAA
*
16267085 TAATTATAATTAATTAATATT
1 TAATTATAATTAAATAAT-TT
**
16267106 TAATTATGTTTAAATAATTT
1 TAATTATAATTAAATAATTT
16267126 TAA
1 TAA
16267129 AAAAATACGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TAATTATAATTAAATAATTT
Found at i:16269225 original size:152 final size:152
Alignment explanation
Indices: 16268735--16269510 Score: 1206
Period size: 152 Copynumber: 5.1 Consensus size: 152
16268725 AAAAAACCCT
16268735 AAAAAATACGAACAAAGGGCCGAAATAAGAG-TTTTTTAAATTTATTTAAAAAACACAGTAAATT
1 AAAAAATACGAACAAAGGGCCGAAATAAGAGTTTTTTTAAATTTATTTAAAAAACACAGTAAATT
*
16268799 AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTT
66 AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAATAGTATATTTT
* *
16268864 TTTAAAGTAATAAATTTTGGAG
131 TTTAAAGTAATAAAATCTGGAG
* *
16268886 AAAAAATACAAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATTTAAAAAACACAGTAAAT
1 AAAAAATACGAACAAAGGGCCGAAATAAGAG-TTTTTTTAAATTTATTTAAAAAACACAGTAAAT
*
16268951 TAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAATATTATATTT
65 TAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAATAGTATATTT
*
16269016 TTTTAAAGTAATAAACTCTAGG-G
130 TTTTAAAGTAATAAAATCT-GGAG
* *
16269039 -AAAAATACGAATAAAGGGCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACAGTAAATT
1 AAAAAATACGAACAAAGGGCCGAAATAAGAGTTTTTTTAAATTTATTTAAAAAACACAGTAAATT
* *
16269103 AATACATTTCAAACATAATGTACTAAAATAATGTAAACTAATAAAATTAGAAAATAGTATATTTT
66 AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAATAGTATATTTT
* *
16269168 TTTAAAGTAATAAACTCTGGGG
131 TTTAAAGTAATAAAATCTGGAG
* * *
16269190 AAAAAATACGAACAAATGGCCGAAATAAGAGTTTTTTTTAATTTATTTAAAAAATACAGTAAATT
1 AAAAAATACGAACAAAGGGCCGAAATAAGAGTTTTTTTAAATTTATTTAAAAAACACAGTAAATT
* * *
16269255 AATACATTTTAAACATGATGTACTAAAATAATGTAAAATAATAAAA-TACAAAAATAATATATTT
66 AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-AAAAATAGTATATTT
16269319 TTATTGAAAGTAATAAAATCT-GAG
130 TT-TT-AAAGTAATAAAATCTGGAG
* *
16269343 AAAAAATACAAACAAAGGGCCGAAATAATGA-TTTTTTT-AATTTATTTAAAAAACACATTAAAT
1 AAAAAATACGAACAAAGGGCCGAAATAA-GAGTTTTTTTAAATTTATTTAAAAAACACAGTAAAT
* * *
16269406 TAATAAATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAAATTAAAAAATAGTATATTT
65 TAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAATAGTATATTT
* * *
16269471 TTTAAAAGTAATAAAATTTGGAA
130 TTTTAAAGTAATAAAATCTGGAG
16269494 AAAAAATACGAACAAAG
1 AAAAAATACGAACAAAG
16269511 AGCCAAAACA
Statistics
Matches: 577, Mismatches: 37, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
150 16 0.03
151 165 0.29
152 226 0.39
153 152 0.26
154 18 0.03
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.32
Consensus pattern (152 bp):
AAAAAATACGAACAAAGGGCCGAAATAAGAGTTTTTTTAAATTTATTTAAAAAACACAGTAAATT
AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAATAGTATATTTT
TTTAAAGTAATAAAATCTGGAG
Found at i:16272111 original size:21 final size:21
Alignment explanation
Indices: 16272074--16272146 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
16272064 CAAAACAACA
* *
16272074 GTTTCTCCCCTCATTCTTGTTG
1 GTTTCT-CCCTCGTTCTTGCTG
*
16272096 GTTTCTCCCTTGTTCTTGCTG
1 GTTTCTCCCTCGTTCTTGCTG
* * *
16272117 GTTTGTCTCTCGTTTTTGCTG
1 GTTTCTCCCTCGTTCTTGCTG
16272138 GTTTCTCCC
1 GTTTCTCCC
16272147 CTCTCTTTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 36 0.86
22 6 0.14
ACGTcount: A:0.01, C:0.29, G:0.18, T:0.52
Consensus pattern (21 bp):
GTTTCTCCCTCGTTCTTGCTG
Found at i:16275068 original size:23 final size:23
Alignment explanation
Indices: 16275042--16275087 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
16275032 CTAATATTAG
*
16275042 ATACCCAAATGATGAAACGAAAA
1 ATACCCAAATGATCAAACGAAAA
16275065 ATACCCAAATGATCAAACGAAAA
1 ATACCCAAATGATCAAACGAAAA
16275088 TGGGAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.57, C:0.20, G:0.11, T:0.13
Consensus pattern (23 bp):
ATACCCAAATGATCAAACGAAAA
Found at i:16275508 original size:30 final size:30
Alignment explanation
Indices: 16275470--16275648 Score: 303
Period size: 30 Copynumber: 6.1 Consensus size: 30
16275460 AATTGCACTG
16275470 TATG-AGTGTATTTTAAAAATAAAAAAATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATA
*
16275499 TATGTAGTGTATTTTAAAAATAAAAATATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATA
*
16275529 TATGTAGTGTACTTTAAAAATAAAAAATATA
1 TATGTAGTGTATTTTAAAAATAAAAAA-ATA
16275560 TATGTAGTGTATTTTAAAAATAAAAAAATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATA
16275590 TATGTAGTGTATTTTAAAAAT--AAAAATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATA
16275618 TATGTAGTGTATTTTAAAAAT-AAAAAATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATA
16275647 TA
1 TA
16275649 GTTTATATTC
Statistics
Matches: 143, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
28 28 0.20
29 13 0.09
30 73 0.51
31 29 0.20
ACGTcount: A:0.52, C:0.01, G:0.10, T:0.37
Consensus pattern (30 bp):
TATGTAGTGTATTTTAAAAATAAAAAAATA
Found at i:16275572 original size:61 final size:59
Alignment explanation
Indices: 16275470--16275648 Score: 301
Period size: 61 Copynumber: 3.0 Consensus size: 59
16275460 AATTGCACTG
16275470 TATG-AGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAATATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAA-ATA
*
16275529 TATGTAGTGTACTTTAAAAATAAAAAATATATATGTAGTGTATTTTAAAAATAAAAAAATA
1 TATGTAGTGTATTTTAAAAATAAAAAA-ATATATGTAGTGTATTTTAAAAAT-AAAAAATA
16275590 TATGTAGTGTATTTTAAAAAT--AAAAATATATGTAGTGTATTTTAAAAATAAAAAATA
1 TATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATA
16275647 TA
1 TA
16275649 GTTTATATTC
Statistics
Matches: 115, Mismatches: 2, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
57 10 0.09
58 24 0.21
59 8 0.07
60 21 0.18
61 47 0.41
62 5 0.04
ACGTcount: A:0.52, C:0.01, G:0.10, T:0.37
Consensus pattern (59 bp):
TATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATA
Found at i:16275608 original size:22 final size:23
Alignment explanation
Indices: 16275582--16275637 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 23
16275572 TTTAAAAATA
16275582 AAAAAATATATGTAGTGTATTTT
1 AAAAAATATATGTAGTGTATTTT
16275605 AAAAATAAAAATATATGTAGTGTATTTT
1 ----A-AAAAATATATGTAGTGTATTTT
16275633 AAAAA
1 AAAAA
16275638 TAAAAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.14
24 1 0.04
27 1 0.04
28 22 0.79
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.38
Consensus pattern (23 bp):
AAAAAATATATGTAGTGTATTTT
Found at i:16279222 original size:21 final size:21
Alignment explanation
Indices: 16279196--16279244 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
16279186 GTTTCTAATT
*
16279196 TCACCGCTACAGTATCCAATC
1 TCACCGCTACAGTAACCAATC
*
16279217 TCACCGCTACAGTAACTAATC
1 TCACCGCTACAGTAACCAATC
16279238 TCACCGC
1 TCACCGC
16279245 CACCTCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.39, G:0.10, T:0.22
Consensus pattern (21 bp):
TCACCGCTACAGTAACCAATC
Found at i:16297647 original size:25 final size:27
Alignment explanation
Indices: 16297592--16297650 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
16297582 GTTTTAAAAT
* *
16297592 TTATTTTTATACAATAATAATAGTATT
1 TTATTTTTATAAAATAATAATAGTATG
16297619 TTATTTTT-TAAAAT-ATAATTA-TATG
1 TTATTTTTATAAAATAATAA-TAGTATG
16297644 TTATTTT
1 TTATTTT
16297651 ACTACTCCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 14 0.48
26 7 0.24
27 8 0.28
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (27 bp):
TTATTTTTATAAAATAATAATAGTATG
Found at i:16297782 original size:45 final size:47
Alignment explanation
Indices: 16297716--16297806 Score: 150
Period size: 45 Copynumber: 2.0 Consensus size: 47
16297706 CATTTTAACC
*
16297716 TACTAAATAATTAACTAAATTACATAGTATTTATTATAAATTATTTA
1 TACTAAATAATTAACTAAATTACATAGTACTTATTATAAATTATTTA
*
16297763 TACTAAAT-A-TAACTAAATTACATAGTACTTATTATTAATTATTT
1 TACTAAATAATTAACTAAATTACATAGTACTTATTATAAATTATTT
16297807 GTATTTGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 33 0.79
46 1 0.02
47 8 0.19
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (47 bp):
TACTAAATAATTAACTAAATTACATAGTACTTATTATAAATTATTTA
Found at i:16307122 original size:18 final size:19
Alignment explanation
Indices: 16307084--16307124 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
16307074 CCGGAAAATG
16307084 AATAATTATGTTTATTAAA
1 AATAATTATGTTTATTAAA
*
16307103 AATAATTTAT-TTTATAAAA
1 AATAA-TTATGTTTATTAAA
16307122 AAT
1 AAT
16307125 GCAAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
AATAATTATGTTTATTAAA
Found at i:16315786 original size:5 final size:5
Alignment explanation
Indices: 16315772--16315811 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
16315762 CTTTCTTTCA
16315772 CCTT- CCTTC CCTTCC CCTTC CCTTC CCTTC CCTTC CCTTC
1 CCTTC CCTTC CCTT-C CCTTC CCTTC CCTTC CCTTC CCTTC
16315812 TTTTTCTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.12
5 25 0.74
6 5 0.15
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
CCTTC
Found at i:16316736 original size:157 final size:157
Alignment explanation
Indices: 16316450--16316765 Score: 587
Period size: 157 Copynumber: 2.0 Consensus size: 157
16316440 CAGTTGAGTA
16316450 ATCTAAAGAGAACATCTAACCAAACTAAATGATGCAGAGAATGATACAACAATTACCACATAATT
1 ATCTAAAGAGAACATCTAACCAAACTAAATGATGCAGAGAATGATACAACAATTACCACATAATT
16316515 TGCTTCATTCACAAATATTTCCTCAAAGAACATGCTTGCATCTCAATTCAATGCTTTTGAAGGCA
66 TGCTTCATTCACAAATATTTCCTCAAAGAACATGCTTGCATCTCAATTCAATGCTTTTGAAGGCA
16316580 AACAAAAGTCCAGAACATTACAATGTC
131 AACAAAAGTCCAGAACATTACAATGTC
* *
16316607 ATCTAAAGAGCACATCTAACCAAACTAAATGATGCAGAGAATGATACGACAATTACCACATAATT
1 ATCTAAAGAGAACATCTAACCAAACTAAATGATGCAGAGAATGATACAACAATTACCACATAATT
16316672 TGCTTCATTCACAAATATTTCCTCAAAGAACATGCTTGCATCTCAATTCAATGCTTTTGAAGGCA
66 TGCTTCATTCACAAATATTTCCTCAAAGAACATGCTTGCATCTCAATTCAATGCTTTTGAAGGCA
* * *
16316737 AACAAAAGTCCAGATCATTGCATTGTC
131 AACAAAAGTCCAGAACATTACAATGTC
16316764 AT
1 AT
16316766 TTCCAAAAAT
Statistics
Matches: 154, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 154 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (157 bp):
ATCTAAAGAGAACATCTAACCAAACTAAATGATGCAGAGAATGATACAACAATTACCACATAATT
TGCTTCATTCACAAATATTTCCTCAAAGAACATGCTTGCATCTCAATTCAATGCTTTTGAAGGCA
AACAAAAGTCCAGAACATTACAATGTC
Found at i:16320664 original size:40 final size:41
Alignment explanation
Indices: 16320620--16320696 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
16320610 TTAATTTTTT
*
16320620 TCTTTTATATTT-TTTAACTTTATTTTTTAT-TATTTTCCTC
1 TCTTTTATATTTCTTTAAC-GTATTTTTTATATATTTTCCTC
* *
16320660 TCTTTTCTATTTCTTTAACGTATTTTTTCTATATTTT
1 TCTTTTATATTTCTTTAACGTATTTTTTATATATTTT
16320697 TTATTTGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.17, C:0.13, G:0.01, T:0.69
Consensus pattern (41 bp):
TCTTTTATATTTCTTTAACGTATTTTTTATATATTTTCCTC
Found at i:16320742 original size:27 final size:29
Alignment explanation
Indices: 16320688--16320742 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
16320678 CGTATTTTTT
16320688 CTATATTTTTTATTTGTTAAAACTAATTC
1 CTATATTTTTTATTTGTTAAAACTAATTC
*
16320717 CTATA-TTTTTATTTTTTAAAAC-AATT
1 CTATATTTTTTATTTGTTAAAACTAATT
16320743 TAATTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
28 16 0.64
29 5 0.20
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (29 bp):
CTATATTTTTTATTTGTTAAAACTAATTC
Found at i:16326091 original size:11 final size:11
Alignment explanation
Indices: 16326075--16326120 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
16326065 TTTCAATGAT
16326075 TTTTATTTTTA
1 TTTTATTTTTA
*
16326086 TTTTATTTTGA
1 TTTTATTTTTA
*
16326097 CTTTTGTTTTTA
1 -TTTTATTTTTA
*
16326109 TTTTCTTTTTA
1 TTTTATTTTTA
16326120 T
1 T
16326121 AGCATATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 21 0.70
12 9 0.30
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:16332999 original size:12 final size:12
Alignment explanation
Indices: 16332982--16333016 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
16332972 ACCACACAGG
*
16332982 CGTGTGGTCGCC
1 CGTGTGGTCGAC
16332994 CGTGTGGTCGAC
1 CGTGTGGTCGAC
*
16333006 CGTGTGATCGA
1 CGTGTGGTCGA
16333017 ACATGGGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.26, G:0.40, T:0.26
Consensus pattern (12 bp):
CGTGTGGTCGAC
Found at i:16362353 original size:47 final size:47
Alignment explanation
Indices: 16362302--16362410 Score: 173
Period size: 47 Copynumber: 2.3 Consensus size: 47
16362292 AGTAATGCAA
*
16362302 ATAAACTGCCAATAATCAAAATTGTGGACAAGCCACCAAAATCGCAG
1 ATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAATCGCAG
*
16362349 ATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAATCGTAG
1 ATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAATCGCAG
* * *
16362396 AAAAAATACCAATAA
1 ATAAACTGCCAATAA
16362411 CGTCCACCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.49, C:0.22, G:0.13, T:0.17
Consensus pattern (47 bp):
ATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAATCGCAG
Found at i:16363756 original size:25 final size:25
Alignment explanation
Indices: 16363722--16363772 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
16363712 TCACACAAGG
16363722 AAAGAATCTTTCCCCATACATGGTA
1 AAAGAATCTTTCCCCATACATGGTA
*
16363747 AAAGAATCTTTCCCCATGCATGGTA
1 AAAGAATCTTTCCCCATACATGGTA
16363772 A
1 A
16363773 CTAGGTTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAGAATCTTTCCCCATACATGGTA
Found at i:16368332 original size:18 final size:18
Alignment explanation
Indices: 16368309--16368351 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
16368299 CTGCTTATAT
16368309 ATGTATACATGTAC-ATAC
1 ATGTATACAT-TACAATAC
* *
16368327 ATGTATATATTTCAATAC
1 ATGTATACATTACAATAC
16368345 ATGTATA
1 ATGTATA
16368352 TATAAGCAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (18 bp):
ATGTATACATTACAATAC
Found at i:16369840 original size:17 final size:17
Alignment explanation
Indices: 16369790--16369842 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
16369780 CAGAAAATTG
* *
16369790 TTTTTCAAAATATAATTA
1 TTTTTAAAAAAAT-ATTA
*
16369808 TTTTTAATACATAATATTA
1 TTTTTAA-A-AAAATATTA
16369827 TTTTTAAAAAAATATT
1 TTTTTAAAAAAATATT
16369843 TTCTCCTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 7 0.24
18 7 0.24
19 12 0.41
20 3 0.10
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTTAAAAAAATATTA
Found at i:16370246 original size:27 final size:25
Alignment explanation
Indices: 16370187--16370251 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
16370177 TTAAGCCACA
* *
16370187 TTTCATTATATTTAAATATTTAATT
1 TTTCATTAAATTTAAACATTTAATT
16370212 TTTGCATTAAAATTT-AACATTTATATAT
1 TTT-CATT-AAATTTAAACATTTA-AT-T
*
16370240 TTTCATTCAATT
1 TTTCATTAAATT
16370252 AATAACTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
25 3 0.09
26 15 0.45
27 11 0.33
28 4 0.12
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (25 bp):
TTTCATTAAATTTAAACATTTAATT
Found at i:16388134 original size:19 final size:19
Alignment explanation
Indices: 16388110--16388184 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
16388100 AATCTTCGAG
* *
16388110 GATATGTAATTTTAGATAT
1 GATATGCAATCTTAGATAT
16388129 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16388148 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
16388169 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
16388185 AGATATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 32 0.63
21 19 0.37
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:16388156 original size:21 final size:21
Alignment explanation
Indices: 16388111--16388173 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
16388101 ATCTTCGAGG
* *
16388111 ATATGTAATTTTAGATATG--
1 ATATGCAATCTTAGATATGAT
16388130 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
16388151 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
16388172 AT
1 AT
16388174 GTAATCTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 17 0.43
21 23 0.57
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.41
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:16388203 original size:23 final size:23
Alignment explanation
Indices: 16388163--16388230 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
16388153 ATGCAATCTT
*
16388163 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTTTGTAATCTTAGA
16388185 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTTTGTAATCTTAGA
16388208 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTTTGTAATCTTAGA
16388231 GATTTAATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 8 0.18
23 36 0.82
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (23 bp):
AGATATGATTTTGTAATCTTAGA
Found at i:16393773 original size:44 final size:45
Alignment explanation
Indices: 16393725--16393983 Score: 277
Period size: 44 Copynumber: 5.9 Consensus size: 45
16393715 GTGAAAAAAT
* * *
16393725 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* *
16393769 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
16393812 AGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
16393857 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* *
16393901 AGAT-TCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GT
1 AGATCT-TGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
16393944 AGATCTTATC-TCCT-TA-AGCAGTAGTGAAGCAGATCGAAGA
1 AGATCTTGTCTTCCTATATTG--GTAGTGAAGTAGATCGAAGA
16393984 CGGCAAATCT
Statistics
Matches: 182, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 8 0.04
43 46 0.25
44 102 0.56
45 23 0.13
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (45 bp):
AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
Found at i:16394110 original size:132 final size:132
Alignment explanation
Indices: 16393936--16394426 Score: 822
Period size: 132 Copynumber: 3.7 Consensus size: 132
16393926 GAAGTGGATC
* * *
16393936 GAAGA-TGTAGATCTTATCTCCTTAAGCAGTAGTGAAGCAGATCGAAGACGGCAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
* *
16394000 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCTTGAGCAACAGCGGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
16394065 TT
131 TT
* *
16394067 AAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
16394132 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
16394197 TT
131 TT
* * * *
16394199 GAAGATTGTAAATATTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATATTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
* *
16394264 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
16394329 TT
131 TT
* * * *
16394331 GAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACAGAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
16394396 TCCAAGATAGTGGGAAGCAGATTTAAGCCAC
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCAC
16394427 TAAATCCTAT
Statistics
Matches: 336, Mismatches: 23, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
131 4 0.01
132 332 0.99
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (132 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
TT
Found at i:16394126 original size:44 final size:44
Alignment explanation
Indices: 16393946--16394394 Score: 117
Period size: 44 Copynumber: 10.2 Consensus size: 44
16393936 GAAGATGTAG
* * *
16393946 ATCTTATCTCCTTAAGCAGTAGTGAAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
* ** * **
16393990 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACGGCAA
** * * * ** * * * * ** * *
16394034 GCCTTGTCTCCTTGAGCAACAGCGGAGTAGGTTAAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
*
16394078 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
* ** * **
16394122 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACGGCAA
** * * * * * * ** ** *
16394166 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
* *
16394210 ATATTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
* * ** **
16394254 ATATTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACGGCAA
* * * * * * * ** **** *
16394297 AGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
* * *
16394342 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACAGAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
16394386 ATCTTATCT
1 ATCTTATCT
16394395 TTCCAAGATA
Statistics
Matches: 276, Mismatches: 109, Indels: 40
0.65 0.26 0.09
Matches are distributed among these distances:
42 12 0.04
43 22 0.08
44 216 0.78
45 20 0.07
46 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
Found at i:16394999 original size:17 final size:19
Alignment explanation
Indices: 16394939--16395015 Score: 91
Period size: 19 Copynumber: 3.8 Consensus size: 19
16394929 AATCTTCGAG
16394939 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
* *
16394958 GATATGCAATTTTAGATAT
1 GATATGTAATCTTAGATAT
16394977 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
*
16394999 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
16395016 GATTTAATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
19 28 0.57
20 3 0.06
22 8 0.16
23 10 0.20
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:16395025 original size:22 final size:23
Alignment explanation
Indices: 16394981--16395025 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
16394971 AGATATGATA
*
16394981 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
16395004 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
16395026 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:16397604 original size:44 final size:44
Alignment explanation
Indices: 16397554--16397711 Score: 133
Period size: 44 Copynumber: 3.6 Consensus size: 44
16397544 GCTTGAATCA
* **
16397554 GCTCCACTATAACTTCAGGGAGATAGGA-TTAGTAGCTTCAGTAT
1 GCTCCACTATAACTTCAGGGAGATAAGACTT-GTAGCTTCAACAT
* * * * * *
16397598 GTTCCACTACAAGTTTAGGGAGATAAGACTTGTATCTTCAACCT
1 GCTCCACTATAACTTCAGGGAGATAAGACTTGTAGCTTCAACAT
* * * *
16397642 GCTCCACTGTAACTTCAAGGAGATAAGACTTATTG-TTCCAACAT
1 GCTCCACTATAACTTCAGGGAGATAAGACTTGTAGCTT-CAACAT
** *
16397686 GCTCCACT-GCACTACAGGGAGATAAG
1 GCTCCACTATAACTTCAGGGAGATAAG
16397712 GTTCGATTTG
Statistics
Matches: 89, Mismatches: 23, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
43 16 0.18
44 71 0.80
45 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
GCTCCACTATAACTTCAGGGAGATAAGACTTGTAGCTTCAACAT
Found at i:16398052 original size:44 final size:46
Alignment explanation
Indices: 16397984--16398106 Score: 125
Period size: 44 Copynumber: 2.8 Consensus size: 46
16397974 GATGCGATCT
* * * *
16397984 GCTCTACTGCAACTT-TGGAGAGATAAGATCTA-T-CCTTTTAATCC
1 GCTCCACTGCAACTTCAGGAGAGATAAGATCTAGTAAC-TTCAATCC
* * *
16398028 GCTTCACTGCAACTTCAGGA-AGATAGGA-CTAGTAACTTCAATCT
1 GCTCCACTGCAACTTCAGGAGAGATAAGATCTAGTAACTTCAATCC
16398072 GCTCCACTGCAACTTCA-GAGAGATAAGATCT-GTAA
1 GCTCCACTGCAACTTCAGGAGAGATAAGATCTAGTAA
16398107 TTTATAGCCT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
43 5 0.08
44 54 0.83
45 6 0.09
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (46 bp):
GCTCCACTGCAACTTCAGGAGAGATAAGATCTAGTAACTTCAATCC
Found at i:16398306 original size:181 final size:181
Alignment explanation
Indices: 16398081--16398559 Score: 683
Period size: 181 Copynumber: 2.6 Consensus size: 181
16398071 TGCTCCACTG
* * *
16398081 CAACTTCAGAGAGATAAGATCTGTAATTTATAGCCTT-AATCTGTTCCACTGTAACTTCAGGAAA
1 CAACTTCAGAGAGATAAGATCGGTAATTTATAG-CTTCAATCTGTTCCACTGCAACTTCAGGGAA
*
16398145 ATAAGATTTGCTATCTTCAGTCTGCTCTACTGTAACTTCAGGGAGATAAGACTCATAATTTCAAC
65 ATAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTCATAATTTCAAC
* *
16398210 CTGCCGCACTACAACTTCAGGGAGATGAGGTTTGATATGATCTACTCTACTA
130 CTGCCCCACTACAACTTCAGGGAGATGAAGTTTGATATGATCTACTCTACTA
* * * *
16398262 TAACTTCAGAGAGATAGGATCGGTATTTTATAGCTTCAATCTGTTTCACTGCAACTTCAGGGAAA
1 CAACTTCAGAGAGATAAGATCGGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
* * * * *
16398327 TAAGATTCGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGTGAGATAAGACTCGTAATTTCAACC
66 TAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTCATAATTTCAACC
* * *
16398392 TGCCCCACTGCAACTTCAGGGAGATGAAGTTTGATATGATCTGCTCTACTG
131 TGCCCCACTACAACTTCAGGGAGATGAAGTTTGATATGATCTACTCTACTA
* **
16398443 CAACTTCAAAGAGATAAGATCGGTAATTTATATATTCAATCTGTTCCACTGCAACTTCAGGGAAA
1 CAACTTCAGAGAGATAAGATCGGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
* * *
16398508 TAAGGTTTGATAAGATCTGT-AGTCTACTCCACTGTAACTTCAGGGAGATAAG
66 TAAGATTTGCT---ATCT-TCAGTCTGCTCCACTGTAACTTCAGGGAGATAAG
16398560 GCTGGTGCTT
Statistics
Matches: 261, Mismatches: 32, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
180 3 0.01
181 225 0.86
184 32 0.12
185 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (181 bp):
CAACTTCAGAGAGATAAGATCGGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
TAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTCATAATTTCAACC
TGCCCCACTACAACTTCAGGGAGATGAAGTTTGATATGATCTACTCTACTA
Found at i:16398416 original size:44 final size:45
Alignment explanation
Indices: 16398308--16398416 Score: 132
Period size: 44 Copynumber: 2.4 Consensus size: 45
16398298 CAATCTGTTT
* * * ** *
16398308 CACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTCGCTATCTTCAACCTGCCC
*
16398353 CACTGCAACTTCAGTGAGATAAGACTCG-TAAT-TTCAACCTGCCC
1 CACTGCAACTTCAGGGAGATAAGACTCGCT-ATCTTCAACCTGCCC
16398397 CACTGCAACTTCAGGGAGAT
1 CACTGCAACTTCAGGGAGAT
16398417 GAAGTTTGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 29 0.53
45 26 0.47
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (45 bp):
CACTGCAACTTCAGGGAGATAAGACTCGCTATCTTCAACCTGCCC
Found at i:16400254 original size:57 final size:57
Alignment explanation
Indices: 16400181--16400292 Score: 152
Period size: 57 Copynumber: 2.0 Consensus size: 57
16400171 TTTCTTTTTC
** * *
16400181 TTCTTTTTCCTTTTTTTTTTGACTCAAAGCGCTCTTTGCAGGTTTTCACTTTGGTCT
1 TTCTTTTTCCTTTTTTTTAGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGGTCT
* * * *
16400238 TTCTTTTTTCTTTTTTTTAGGACTCAAGGCGCCCTTTGCTGGTTTTTACCTTGGT
1 TTCTTTTTCCTTTTTTTTAGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGGT
16400293 TTCTTCCTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.10, C:0.21, G:0.16, T:0.54
Consensus pattern (57 bp):
TTCTTTTTCCTTTTTTTTAGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGGTCT
Found at i:16400304 original size:57 final size:57
Alignment explanation
Indices: 16400177--16400304 Score: 143
Period size: 57 Copynumber: 2.2 Consensus size: 57
16400167 CATTTTTCTT
** * *
16400177 TTTCTTCTTTTTCCTTTTTTTTTTGACTCAAAGCGCTCTTTGCAGGTTTTCACTTTGGTC
1 TTTCTTC-TTTT-CTTTTTTTTAGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGG-C
* * *
16400237 TTTCTT-TTTTCTTTTTTTTAGGACTCAAGGCGCCCTTTGCTGGTTTTTACCTTGG-
1 TTTCTTCTTTTCTTTTTTTTAGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGGC
16400292 TTTCTTCCTTTTC
1 TTTCTT-CTTTTC
16400305 AGGTAAAATC
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
55 6 0.10
57 43 0.73
58 4 0.07
60 6 0.10
ACGTcount: A:0.09, C:0.22, G:0.14, T:0.55
Consensus pattern (57 bp):
TTTCTTCTTTTCTTTTTTTTAGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGGC
Found at i:16415862 original size:19 final size:20
Alignment explanation
Indices: 16415840--16415947 Score: 59
Period size: 19 Copynumber: 5.6 Consensus size: 20
16415830 AGCCCTTGAT
16415840 TTAAAAATTATATAAAA-AA
1 TTAAAAATTATATAAAATAA
* *
16415859 TT-AAAATCA-ATAAAA-AC
1 TTAAAAATTATATAAAATAA
*
16415876 TATAAATATTAT-TAAATATTAA
1 T-TAAAAATTATATAAA-A-TAA
*
16415898 -TAAAAATTATAAAAAATAA
1 TTAAAAATTATATAAAATAA
** **
16415917 GAAAAAATTATA-AAAATCG
1 TTAAAAATTATATAAAATAA
*
16415936 TAAAAAATTATA
1 TTAAAAATTATA
16415948 AAATTTTATA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
17 8 0.11
18 7 0.10
19 30 0.43
20 21 0.30
21 3 0.04
22 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (20 bp):
TTAAAAATTATATAAAATAA
Found at i:16415912 original size:10 final size:10
Alignment explanation
Indices: 16415899--16415950 Score: 61
Period size: 10 Copynumber: 5.3 Consensus size: 10
16415889 AAATATTAAT
16415899 AAAAATTATA
1 AAAAATTATA
* *
16415909 AAAAATAAGA
1 AAAAATTATA
16415919 AAAAATTAT-
1 AAAAATTATA
**
16415928 AAAAATCGTA
1 AAAAATTATA
16415938 AAAAATTATA
1 AAAAATTATA
16415948 AAA
1 AAA
16415951 TTTTATAAAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
9 7 0.21
10 26 0.79
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (10 bp):
AAAAATTATA
Found at i:16415922 original size:20 final size:20
Alignment explanation
Indices: 16415899--16415950 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
16415889 AAATATTAAT
16415899 AAAAATTATAAAAAATAAG-A
1 AAAAATTATAAAAAAT-AGTA
*
16415919 AAAAATTAT-AAAAATCGTA
1 AAAAATTATAAAAAATAGTA
16415938 AAAAATTATAAAA
1 AAAAATTATAAAA
16415951 TTTTATAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 1 0.03
19 16 0.55
20 12 0.41
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (20 bp):
AAAAATTATAAAAAATAGTA
Found at i:16416689 original size:22 final size:22
Alignment explanation
Indices: 16416648--16416697 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
16416638 AATGAGAGAA
* *
16416648 AAGG-AAAAGAGAAGGGAA-GG
1 AAGGAAAAAGAGAAAGAAAGGG
16416668 AATGGAAAAAGAGAAAGAAAGGG
1 AA-GGAAAAAGAGAAAGAAAGGG
16416691 AAGGAAA
1 AAGGAAA
16416698 GAAAAAGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 2 0.08
22 17 0.68
23 4 0.16
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.02
Consensus pattern (22 bp):
AAGGAAAAAGAGAAAGAAAGGG
Found at i:16416689 original size:27 final size:27
Alignment explanation
Indices: 16416636--16416713 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 27
16416626 TGGATGGATG
16416636 GGAATGAGAGAAAAGGAAAAGAGAAGGGAA
1 GGAATG-GA-AAAAGG-AAAGAGAAGGGAA
16416666 GGAATGGAAAAAGAGAAAGA-AAGGGAA
1 GGAATGGAAAAAG-GAAAGAGAAGGGAA
* *
16416693 GGAA-AGAAAAAGGAAAAAGAA
1 GGAATGGAAAAAGGAAAGAGAA
16416714 TAAAATAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 5 0.11
26 9 0.20
27 11 0.25
28 10 0.23
29 3 0.07
30 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.03
Consensus pattern (27 bp):
GGAATGGAAAAAGGAAAGAGAAGGGAA
Found at i:16417304 original size:21 final size:21
Alignment explanation
Indices: 16417280--16417344 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
16417270 TAATATATTT
16417280 TAATTTTTGATAAAAATAAAA
1 TAATTTTTGATAAAAATAAAA
* **
16417301 TAATTTTAG-T-TTAATAAAA
1 TAATTTTTGATAAAAATAAAA
*
16417320 TTAATTTTTAATAAAAATAAAA
1 -TAATTTTTGATAAAAATAAAA
16417342 TAA
1 TAA
16417345 AATAAATTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 7 0.21
20 8 0.24
21 12 0.35
22 7 0.21
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
TAATTTTTGATAAAAATAAAA
Found at i:16427155 original size:21 final size:22
Alignment explanation
Indices: 16427129--16427175 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
16427119 CTCTGCTCAA
* *
16427129 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGATGCGAAGTACT
16427150 ACTCCACCTGATGCGAAGTACT
1 ACTCCACCTGATGCGAAGTACT
16427172 ACTC
1 ACTC
16427176 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGATGCGAAGTACT
Found at i:16430170 original size:43 final size:43
Alignment explanation
Indices: 16430109--16430378 Score: 249
Period size: 43 Copynumber: 6.3 Consensus size: 43
16430099 TGCTATAGAC
* * *
16430109 AACGTCGCTATAGAACATGACCTTTAGCGGCGCTTTTATAATA
1 AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTATAACA
* * *
16430152 AACGTCGCTAAAGAACATGACCTTTAACGAC-ATTTTACCAACA
1 AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTA-TAACA
* * * * * *
16430195 AATGCCGCTAAAAAACATGACCTTAAGCGGCGCTTTTATCACA
1 AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTATAACA
* ** * * *
16430238 AACGCCGCTAAAGAACATGATATTTAACGACACTTTTA-ACCCA
1 AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTATA-ACA
* * * ** *
16430281 AACGTTGCTAAAAAACATGATCTTTAGCGGTGCTTTTATCACA
1 AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTATAACA
* * *
16430324 AACGTCGCTAAAGAGCATGACCTTTAGCGACACTTTTATCACA
1 AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTATAACA
16430367 AAC-TCCGCTAAA
1 AACGT-CGCTAAA
16430379 AGTACCGTTC
Statistics
Matches: 180, Mismatches: 42, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
42 6 0.03
43 169 0.94
44 5 0.03
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
AACGTCGCTAAAGAACATGACCTTTAGCGACGCTTTTATAACA
Found at i:16430264 original size:86 final size:86
Alignment explanation
Indices: 16430122--16430379 Score: 342
Period size: 86 Copynumber: 3.0 Consensus size: 86
16430112 GTCGCTATAG
* *
16430122 AACATGACCTTTAGCGGCGCTTTTATAATAAACGTCGCTAAAGAACATGACCTTTAACGACA-TT
1 AACATGACCTTTAGCGGCGCTTTTATCACAAACGTCGCTAAAGAACATGACCTTTAACGACACTT
16430186 TTACCAACAAATGCCGCTAAAA
66 TTACC-ACAAATGCCGCTAAAA
* * **
16430208 AACATGACCTTAAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGATATTTAACGACACTT
1 AACATGACCTTTAGCGGCGCTTTTATCACAAACGTCGCTAAAGAACATGACCTTTAACGACACTT
* **
16430273 TTAACC-CAAACGTTGCTAAAA
66 TT-ACCACAAATGCCGCTAAAA
* * * *
16430294 AACATGATCTTTAGCGGTGCTTTTATCACAAACGTCGCTAAAGAGCATGACCTTTAGCGACACTT
1 AACATGACCTTTAGCGGCGCTTTTATCACAAACGTCGCTAAAGAACATGACCTTTAACGACACTT
*
16430359 TTATCACAAACT-CCGCTAAAA
66 TTACCACAAA-TGCCGCTAAAA
16430380 GTACCGTTCT
Statistics
Matches: 147, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
85 2 0.01
86 138 0.94
87 4 0.03
88 3 0.02
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (86 bp):
AACATGACCTTTAGCGGCGCTTTTATCACAAACGTCGCTAAAGAACATGACCTTTAACGACACTT
TTACCACAAATGCCGCTAAAA
Found at i:16436879 original size:16 final size:16
Alignment explanation
Indices: 16436858--16436903 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
16436848 TTATTAAATT
16436858 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
16436874 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
16436889 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
16436904 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:16436912 original size:107 final size:108
Alignment explanation
Indices: 16436798--16437008 Score: 388
Period size: 107 Copynumber: 2.0 Consensus size: 108
16436788 TATAGTATTA
* * *
16436798 TATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
16436863 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
16436905 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
16436970 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
16437009 ATGATTAAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 94 0.94
108 6 0.06
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:16436986 original size:16 final size:16
Alignment explanation
Indices: 16436965--16437006 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
16436955 TTATTAAATT
*
16436965 ATATATTTTAATTATA
1 ATATATTTTAATAATA
16436981 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
16436996 AT-TATGTTTAA
1 ATATAT-TTTAA
16437007 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:16436991 original size:15 final size:15
Alignment explanation
Indices: 16436956--16436997 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
16436946 TTAAGAATTT
*
16436956 TATTAAATTAT-ATA
1 TATTTAATTATAATA
16436970 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
16436984 TATTTAATAATAAT
1 TATTTAATTATAAT
16436998 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:16437232 original size:45 final size:44
Alignment explanation
Indices: 16437151--16437241 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 44
16437141 ACTTCTATTC
*
16437151 CATTCAACCAAACATAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACATAAGATTACTATTACACCTCTATTCCATTA
* *
16437195 CATTCAACCAAACAGT-TGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACA-TAAGA-TTACTATTACACCTCTATTCCATTA
16437240 CA
1 CA
16437242 CCTCTAATCC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 16 0.38
45 26 0.62
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACATAAGATTACTATTACACCTCTATTCCATTA
Found at i:16437241 original size:16 final size:16
Alignment explanation
Indices: 16437222--16437289 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
16437212 GATTTGCTAT
* *
16437222 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
16437238 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
16437254 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
16437270 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
16437286 TACA
1 TACA
16437290 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:16438642 original size:104 final size:104
Alignment explanation
Indices: 16438507--16438773 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
16438497 TTGTATATAA
** *
16438507 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
16438572 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
16438611 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
16438675 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
16438715 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
16438774 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
104 152 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:16446118 original size:104 final size:104
Alignment explanation
Indices: 16445979--16446244 Score: 448
Period size: 104 Copynumber: 2.6 Consensus size: 104
16445969 TTGTATATAA
** *
16445979 AGGGGTTGCTGTGTGCTGATTCCCCGATT-ATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
16446043 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
16446083 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
16446146 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
16446186 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
16446245 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
103 58 0.38
104 94 0.61
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:16448548 original size:14 final size:14
Alignment explanation
Indices: 16448488--16448647 Score: 72
Period size: 14 Copynumber: 11.2 Consensus size: 14
16448478 CTAATTAATC
*
16448488 TAAACCCTAAACCCC
1 TAAACCCTAAA-CCA
**
16448503 TATCCCCTAAACCA
1 TAAACCCTAAACCA
* * *
16448517 TAAATCATAAAACA
1 TAAACCCTAAACCA
* *
16448531 TAAACCATAAACCC
1 TAAACCCTAAACCA
* *
16448545 TAAACCCCTAAATCT
1 TAAA-CCCTAAACCA
* *
16448560 TAAACCCTAACCCT
1 TAAACCCTAAACCA
* *
16448574 TAAACCATAATCCA
1 TAAACCCTAAACCA
*
16448588 TAAACCTTAAA--A
1 TAAACCCTAAACCA
* **
16448600 TAGTAACTCATAAACTT
1 TA--AAC-CCTAAACCA
*
16448617 TAAACCCTAAACTA
1 TAAACCCTAAACCA
* *
16448631 TATACCCTAAACTA
1 TAAACCCTAAACCA
16448645 TAA
1 TAA
16448648 TGATAATTAA
Statistics
Matches: 112, Mismatches: 27, Indels: 13
0.74 0.18 0.09
Matches are distributed among these distances:
12 3 0.03
14 79 0.71
15 28 0.25
17 2 0.02
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:16448555 original size:8 final size:7
Alignment explanation
Indices: 16448487--16448598 Score: 64
Period size: 7 Copynumber: 15.7 Consensus size: 7
16448477 ACTAATTAAT
16448487 CTAAACC
1 CTAAACC
16448494 CTAAACCC
1 CTAAA-CC
**
16448502 CTATCCC
1 CTAAACC
16448509 CTAAACC
1 CTAAACC
* *
16448516 ATAAATC
1 CTAAACC
* *
16448523 ATAAAAC
1 CTAAACC
*
16448530 ATAAACC
1 CTAAACC
*
16448537 ATAAACC
1 CTAAACC
16448544 CTAAACCC
1 CTAAA-CC
*
16448552 CTAAATC
1 CTAAACC
*
16448559 TTAAACC
1 CTAAACC
16448566 CT-AACC
1 CTAAACC
16448572 CTTAAACC
1 C-TAAACC
* *
16448580 ATAATCC
1 CTAAACC
*
16448587 ATAAACC
1 CTAAACC
*
16448594 TTAAA
1 CTAAA
16448599 ATAGTAACTC
Statistics
Matches: 84, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
6 5 0.06
7 63 0.75
8 16 0.19
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:16448564 original size:50 final size:50
Alignment explanation
Indices: 16448488--16448598 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
16448478 CTAATTAATC
** *
16448488 TAAACCCTAAACCCCTATCCCCTAAACCATAAATCATAAAACATAAACCA
1 TAAACCCTAAACCCCTAAACCCTAAACCATAAACCATAAAACATAAACCA
* * * * * * *
16448538 TAAACCCTAAACCCCTAAATCTTAAACCCTAACCCTTAAACCATAATCCA
1 TAAACCCTAAACCCCTAAACCCTAAACCATAAACCATAAAACATAAACCA
*
16448588 TAAACCTTAAA
1 TAAACCCTAAA
16448599 ATAGTAACTC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (50 bp):
TAAACCCTAAACCCCTAAACCCTAAACCATAAACCATAAAACATAAACCA
Found at i:16448595 original size:21 final size:21
Alignment explanation
Indices: 16448510--16448647 Score: 82
Period size: 21 Copynumber: 6.5 Consensus size: 21
16448500 CCCTATCCCC
* * *
16448510 TAAACCATAAATCATAAAACA
1 TAAACCATAAACCATAAACCT
* *
16448531 TAAACCATAAACCCTAAACCCC
1 TAAACCATAAACCATAAA-CCT
* * * *
16448553 TAAATCTTAAACCCTAACCCT
1 TAAACCATAAACCATAAACCT
*
16448574 TAAACCATAATCCATAAACCT
1 TAAACCATAAACCATAAACCT
*
16448595 TAAA--ATAGTAACTCATAAACTT
1 TAAACCATA--AAC-CATAAACCT
* * * *
16448617 TAAACCCTAAACTATATACCC
1 TAAACCATAAACCATAAACCT
*
16448638 TAAACTATAA
1 TAAACCATAA
16448648 TGATAATTAA
Statistics
Matches: 89, Mismatches: 22, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
19 3 0.03
21 53 0.60
22 31 0.35
24 2 0.02
ACGTcount: A:0.49, C:0.27, G:0.01, T:0.24
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:16449113 original size:40 final size:40
Alignment explanation
Indices: 16449058--16449162 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 40
16449048 TTTTTTGTGG
*
16449058 CGTTTTTCAAAAAGCGCTGCTAATGATCGATCTATAGCGA
1 CGTTTTTCAAAAAGCGCTGCTAATGATCAATCTATAGCGA
* * * *
16449098 CGTTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCGG
1 CGTTTTTCAAAAAGCGCTGCTAATGATCAATCTATAGCGA
* *
16449138 CATTTTTGAAAAAGCGCTGCTAATG
1 CGTTTTTCAAAAAGCGCTGCTAATG
16449163 CCACTAAAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (40 bp):
CGTTTTTCAAAAAGCGCTGCTAATGATCAATCTATAGCGA
Found at i:16449132 original size:147 final size:145
Alignment explanation
Indices: 16448950--16449426 Score: 598
Period size: 147 Copynumber: 3.2 Consensus size: 145
16448940 GTTTTTTGCG
* * * *
16448950 GCGTTTTTGATAAAGCGCCGCTAAAGCTCAATCTATAGCGGCATTTTTCAAAAAGCATCGCTAAT
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGC-CCGCTAAT
* *
16449015 GCCATTAAAGCTCAACACGGCGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCTGCTA
65 GCCACTAAAGCTCAACACGGCGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTA
*
16449080 ATGATCGATCTATAGC
130 ATGCTCGATCTATAGC
* * *
16449096 GACGTTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTGAAAAAGCGCTGCTAA
1 G-CGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGC-CCGCTAA
* *
16449161 TGCCACTAAAGCTCAACACGATTGTGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAAGCAC
64 TGCCACTAAAGCTCAACACG---GCGTTGTGCTTAACTTTTTTGTGGCGTTTTTC-AAAAAGCGC
* * *
16449226 CGCTAGTGCTCGATTTATAGT
125 CGCTAATGCTCGATCTATAGC
* *
16449247 G-GCTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAAT
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGC-CCGCTAAT
* * *
16449311 GCCACTAAAGCTCAACATAAAATAACGGCATTGTGCTTAA-TTTTTTGCGGCGATTTTCAAAAAG
65 GCCACTAAAGCTCAAC--------ACGGCGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAG
16449375 CGCCGCTAATGCTCGATCTATAGC
122 CGCCGCTAATGCTCGATCTATAGC
*
16449399 GGCGTTTTTCAAAAAGCGCTGCTAATGC
1 -GCGTTTTTCAAAAAGCGCCGCTAATGC
16449427 CATTAAAACT
Statistics
Matches: 286, Mismatches: 30, Indels: 22
0.85 0.09 0.07
Matches are distributed among these distances:
146 1 0.00
147 75 0.26
149 74 0.26
150 31 0.11
151 25 0.09
152 26 0.09
153 17 0.06
154 34 0.12
157 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (145 bp):
GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGCCCGCTAATG
CCACTAAAGCTCAACACGGCGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTAA
TGCTCGATCTATAGC
Found at i:16449291 original size:149 final size:146
Alignment explanation
Indices: 16448961--16449426 Score: 589
Period size: 149 Copynumber: 3.1 Consensus size: 146
16448951 CGTTTTTGAT
* * *
16448961 AAAGCGCCGCTAAAGCTCAATCTATAGCGGCATTTTTCAAAAAGC-ATCGCTAATGCCATTAAAG
1 AAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGCGCT-GCTAATGCCACTAAAG
* *
16449025 CTCAACACG--GCGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCTGCTAATGATCGA
65 CTCAACACGATG-GTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
* *
16449088 TCTATAGCGACGTTTTTTAA
129 TCTATAGCG--GCTTTTCAA
*
16449108 AAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTGAAAAAGCGCTGCTAATGCCACTAAAGC
1 AAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGCGCTGCTAATGCCACTAAAGC
* *
16449173 TCAACACGATTGTGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAAGCACCGCTAGTGCTCG
66 TCAACACGA-TG-GTTGTGCTTAACTTTTTTGTGGCGTTTTTC-AAAAAGCGCCGCTAATGCTCG
* *
16449238 ATTTATAGTGGCTTTTCAA
128 ATCTATAGCGGCTTTTCAA
* *
16449257 AAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACTAAAGC
1 AAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGCGCTGCTAATGCCACTAAAGC
** * *
16449322 TCAACATAAAATAACGGCATTGTGCTTAA-TTTTTTGCGGCGATTTTCAAAAAGCGCCGCTAATG
66 TCAAC--ACGAT---GG--TTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTAATG
16449386 CTCGATCTATAGCGGCGTTTTTCAA
124 CTCGATCTATAGCGGC--TTTTCAA
*
16449411 AAAGCGCTGCTAATGC
1 AAAGCGCCGCTAATGC
16449427 CATTAAAACT
Statistics
Matches: 280, Mismatches: 25, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
147 67 0.24
148 1 0.00
149 74 0.26
150 32 0.11
151 27 0.10
152 30 0.11
153 17 0.06
154 32 0.11
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (146 bp):
AAAGCGCCGCTAATGCTCAATCTATAGCGGCATTTTTCAAAAAGCGCTGCTAATGCCACTAAAGC
TCAACACGATGGTTGTGCTTAACTTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATC
TATAGCGGCTTTTCAA
Found at i:16449305 original size:40 final size:39
Alignment explanation
Indices: 16449211--16449426 Score: 151
Period size: 40 Copynumber: 5.6 Consensus size: 39
16449201 TTTGTGGCGT
* * * *
16449211 TTTTCAAAAAAGCACCGCTAGTGCTCGATTTATAGTGGC-
1 TTTTC-AAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
16449250 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
1 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
* *
16449289 TTTTTCAAAAAGCGCCGCTAATGC-C-A-CTAAAGC-TCA
1 -TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
*** * ** ** * * *
16449325 ACAT-AAAATAACG--GCATTGTGCTTAATTTTTTGCGGCGA
1 TTTTCAAAA-AGCGCCGC-TAATGCTCGATCTATAGCGGC-A
*
16449364 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGT
1 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC-A
*
16449404 TTTTCAAAAAGCGCTGCTAATGC
1 TTTTCAAAAAGCGCCGCTAATGC
16449427 CATTAAAACT
Statistics
Matches: 134, Mismatches: 31, Indels: 23
0.71 0.16 0.12
Matches are distributed among these distances:
33 2 0.01
34 8 0.06
35 4 0.03
36 3 0.02
37 9 0.07
38 31 0.23
39 11 0.08
40 64 0.48
41 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (39 bp):
TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
Found at i:16449521 original size:114 final size:114
Alignment explanation
Indices: 16449250--16449520 Score: 418
Period size: 114 Copynumber: 2.4 Consensus size: 114
16449240 TTATAGTGGC
16449250 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCA
1 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCA
* *
16449315 CTAAAGCTCAACATAAAATAACGGCATTGTGCTTAATTTTTTGCGGCGA
66 CTAAAACTCAACATAAAATAACAGCATTGTGCTTAATTTTTTGCGGCGA
* *
16449364 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCTGCTAATGCCA
1 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCA
* * * * * *
16449429 TTAAAACTCAACATAAAATGACATCATT-TGCTTATTTTTTTGTGGCGT
66 CTAAAACTCAACATAAAATAACAGCATTGTGCTTAATTTTTTGCGGCGA
* * *
16449477 TTTTTAAAAAGTGCCGCTAATGCTCGATCTATAGCGTCATTTTT
1 TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTT
16449521 TATCCAAACG
Statistics
Matches: 143, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
113 57 0.40
114 86 0.60
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (114 bp):
TTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCA
CTAAAACTCAACATAAAATAACAGCATTGTGCTTAATTTTTTGCGGCGA
Found at i:16451762 original size:12 final size:12
Alignment explanation
Indices: 16451745--16451789 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 12
16451735 AAGAGAATAG
16451745 AAAATAAAGAAA
1 AAAATAAAGAAA
16451757 AAAATAAAGTTAAA
1 AAAATAAAG--AAA
16451771 AGAACATAAAGAAA
1 A-AA-ATAAAGAAA
16451785 AAAAT
1 AAAAT
16451790 TAAATTGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 11 0.38
13 2 0.07
14 8 0.28
15 2 0.07
16 6 0.21
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (12 bp):
AAAATAAAGAAA
Found at i:16451873 original size:32 final size:32
Alignment explanation
Indices: 16451832--16451900 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
16451822 CAATAGTATA
*
16451832 ATTT-AACATATAATTTTCGTTTGAAATGATG
1 ATTTAAACATATAATTTTCATTTGAAATGATG
16451863 ATTTAAACATATAATTTTCATTTGAAATGATG
1 ATTTAAACATATAATTTTCATTTGAAATGATG
16451895 ATTTAA
1 ATTTAA
16451901 CATGCCATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (32 bp):
ATTTAAACATATAATTTTCATTTGAAATGATG
Found at i:16452815 original size:96 final size:97
Alignment explanation
Indices: 16452710--16452969 Score: 348
Period size: 96 Copynumber: 2.7 Consensus size: 97
16452700 TAATTAAAAC
* * * *
16452710 TTTTAATGTTAATGATAATAAAGTAATTAATAGTTTCTTTTAATAAGAAAATAATATTAAATAAT
1 TTTTTATGTTAATGATAATAAAATAATTAATATTTTCTTTTAATAAGAAAATAAGATTAAATAAT
16452775 TATCATT-AAAAAATTTAAATAATTAATAAAT-
66 TATCATTCAAAAAA-TTAAATAATTAATAAATA
* *
16452806 TTTTTATGTTAATGATAATAAAATAATTAATATTTTATTTTAGTAA-AAAATAAGA-TAAATAAT
1 TTTTTATGTTAATGATAATAAAATAATTAATATTTTCTTTTAATAAGAAAATAAGATTAAATAAT
**
16452869 TATTGTTCAAAAAATTAAATAATTAATAAATA
66 TATCATTCAAAAAATTAAATAATTAATAAATA
* * * * *
16452901 TTTTTAATGATAACGATAATGAAAATAATTAAGATTTTCTTTGAATAGGAAAATAAGATTAAATA
1 TTTTT-ATGTTAATGATAAT-AAAATAATTAATATTTTCTTTTAATAAGAAAATAAGATTAAATA
16452966 ATTA
64 ATTA
16452970 AATTTAAAAA
Statistics
Matches: 143, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
94 30 0.21
95 19 0.13
96 53 0.37
97 22 0.15
98 9 0.06
99 10 0.07
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (97 bp):
TTTTTATGTTAATGATAATAAAATAATTAATATTTTCTTTTAATAAGAAAATAAGATTAAATAAT
TATCATTCAAAAAATTAAATAATTAATAAATA
Found at i:16453177 original size:22 final size:22
Alignment explanation
Indices: 16453134--16453181 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
16453124 TACTGATTCC
*
16453134 ATTTAGTTTTATTTTTTATTTT
1 ATTTAGTTTTATTTTATATTTT
*
16453156 ATTTATTTTTA-TTTATACTTTT
1 ATTTAGTTTTATTTTATA-TTTT
16453178 ATTT
1 ATTT
16453182 TTATTGTCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (22 bp):
ATTTAGTTTTATTTTATATTTT
Found at i:16458043 original size:14 final size:14
Alignment explanation
Indices: 16458020--16458051 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
16458010 TGTCGTGTTC
*
16458020 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
16458034 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
16458048 TTAG
1 TTAG
16458052 AACAATCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:16458300 original size:22 final size:22
Alignment explanation
Indices: 16458275--16458341 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
16458265 ATTTAGCCAT
16458275 TTTTATTTTTATTTTTATTAAA
1 TTTTATTTTTATTTTTATTAAA
* *
16458297 TTTTATTTTTGTTTTTAGTCTAAT
1 TTTTATTTTTATTTTTA-T-TAAA
*
16458321 TTTTGTTTTCTAATTTTTATT
1 TTTTATTTT-T-ATTTTTATT
16458342 TTATTTGCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 16 0.43
23 1 0.03
24 12 0.32
25 2 0.05
26 6 0.16
ACGTcount: A:0.19, C:0.03, G:0.04, T:0.73
Consensus pattern (22 bp):
TTTTATTTTTATTTTTATTAAA
Found at i:16463188 original size:27 final size:27
Alignment explanation
Indices: 16463158--16463211 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
16463148 CAATTATGTA
16463158 TACTTATTTCGTGCTTTAATATTTTAG
1 TACTTATTTCGTGCTTTAATATTTTAG
16463185 TACTTATTTCGTGCTTTAATATTTTAG
1 TACTTATTTCGTGCTTTAATATTTTAG
16463212 GGATATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (27 bp):
TACTTATTTCGTGCTTTAATATTTTAG
Found at i:16472748 original size:10 final size:9
Alignment explanation
Indices: 16472732--16472775 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
16472722 TTTTAGATTT
16472732 AAAAATATA
1 AAAAATATA
16472741 ATAAAATATA
1 A-AAAATATA
**
16472751 AAAAAGCTA
1 AAAAATATA
*
16472760 AAATATATA
1 AAAAATATA
16472769 AAAAATA
1 AAAAATA
16472776 CACCGAACCC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
9 19 0.68
10 9 0.32
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (9 bp):
AAAAATATA
Done.