genome.fa.s23.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  59  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17990794--17990826	16	2.1	16	100	0	66	30	24	6	39	1.79
17991263--17991291	13	2.2	13	100	0	58	65	6	13	13	1.45
17993495--17994212	114	6.3	114	88	2	1032	30	20	21	27	1.98
17993495--17994212	227	3.2	226	86	4	998	30	20	21	27	1.98
17993495--17994194	341	2.1	340	92	2	1147	30	20	21	27	1.98
17994955--17994985	14	2.1	15	94	5	55	29	0	32	38	1.57
17995048--17995086	17	2.4	16	84	12	53	30	0	33	35	1.58
17995055--17995087	17	1.9	17	93	0	57	27	0	36	36	1.57
17995436--17995473	13	3.0	13	84	7	51	76	2	2	18	1.02
17995842--17996094	76	3.2	76	77	12	226	25	16	25	32	1.97
17995780--17996094	160	2.0	161	80	3	357	25	17	25	32	1.97
17997176--17997576	9	41.8	9	66	24	71	46	11	1	39	1.49
17997185--17997663	56	8.2	56	82	10	552	45	11	1	40	1.50
17997282--17997332	22	2.4	22	86	3	77	47	9	1	41	1.48
17997420--17997452	16	2.1	16	100	0	66	45	24	0	30	1.53
17997389--17997579	50	3.9	50	70	19	145	46	13	0	40	1.43
17997474--17997574	22	4.6	22	68	26	72	49	11	0	38	1.40
17997439--17997803	34	11.1	34	71	17	213	44	11	1	42	1.51
17997585--17997630	22	2.1	22	91	0	74	45	10	0	43	1.39
17997595--17997884	140	2.1	139	99	0	571	42	13	2	42	1.55
17997700--17997906	9	23.8	9	67	16	71	42	14	1	41	1.56
17997908--17997963	25	2.2	25	83	0	67	44	14	5	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17997944--17997977	16	2.1	16	94	0	59	52	14	0	32	1.42
18003393--18003562	66	2.6	66	79	3	164	40	17	27	15	1.89
18003533--18003645	21	5.4	21	84	0	118	33	15	43	7	1.74
18003544--18003645	42	2.4	42	85	0	132	33	15	44	6	1.73
18004016--18004205	43	4.4	43	81	0	227	24	18	32	25	1.97
18004370--18004414	22	2.1	21	91	4	72	42	28	17	11	1.84
18004613--18004807	41	4.8	41	85	3	277	29	26	22	21	1.99
18004613--18004797	81	2.3	81	86	6	259	29	25	22	22	1.99
18009069--18009106	13	2.8	14	80	8	51	28	13	13	44	1.81
18009440--18009494	18	2.8	19	76	15	58	56	0	1	41	1.10
18009928--18009990	20	3.2	20	75	4	65	53	1	0	44	1.10
18012794--18012839	21	2.2	21	88	7	67	76	4	2	17	1.06
18015655--18015754	43	2.3	43	82	0	119	12	19	20	49	1.79
18022846--18022880	14	2.5	14	95	0	61	25	25	31	17	1.97
18036531--18036584	27	1.9	27	88	7	81	53	0	9	37	1.33
18041055--18041142	41	2.1	42	87	2	124	35	14	21	28	1.93
18041236--18041290	26	2.1	26	100	0	110	18	60	3	18	1.51
18042155--18042180	12	2.2	12	100	0	52	30	0	34	34	1.58
18045578--18045718	43	3.3	42	88	4	201	32	23	16	27	1.96
18049009--18049043	15	2.3	15	90	0	52	54	0	8	37	1.31
18051593--18051666	10	7.3	10	73	13	53	31	1	2	64	1.15
18051601--18051655	20	2.8	19	78	8	65	32	1	1	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18051737--18051802	8	7.5	8	71	18	51	28	1	1	68	1.08
18051706--18051841	46	3.0	44	71	24	120	36	0	2	60	1.14
18051741--18051797	19	3.0	20	80	12	57	33	1	1	63	1.15
18051737--18051811	27	2.7	29	84	10	86	32	1	1	65	1.09
18051723--18051802	17	4.5	17	74	12	63	31	1	2	65	1.14
18051831--18051889	30	2.0	29	83	6	75	33	3	0	62	1.12
18051854--18051910	19	2.9	19	78	17	55	26	7	3	63	1.36
18052507--18052545	21	1.9	20	85	15	53	56	2	5	35	1.35
18053078--18053148	29	2.6	26	77	18	72	43	1	1	53	1.18
18053096--18053145	13	3.2	16	70	18	52	48	0	0	52	1.00
18053088--18053145	29	2.0	30	83	10	75	44	1	1	51	1.21
18060021--18060065	16	2.8	16	82	3	54	42	20	6	31	1.77
18063401--18063537	33	4.2	32	72	12	116	27	2	45	24	1.65
18081296--18081344	24	2.0	24	96	0	89	44	4	4	46	1.41
18084208--18084251	21	2.1	21	91	0	70	31	13	13	40	1.84
18084573--18084602	12	2.4	12	94	5	51	56	0	3	40	1.16
18084878--18084980	41	2.5	41	85	0	134	29	17	26	27	1.98
18085202--18085271	35	2.0	36	86	8	99	31	5	21	41	1.76
18086092--18086158	12	6.3	11	72	17	52	61	0	2	35	1.12
18086093--18086167	31	2.4	31	95	0	132	62	0	2	34	1.09
18086111--18086169	17	3.6	17	72	21	63	61	0	1	37	1.07
18086124--18086213	40	2.3	40	94	1	155	65	0	3	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18086142--18086175	17	2.0	17	88	0	50	70	0	0	29	0.87
18086173--18086198	11	2.4	11	100	0	52	53	0	7	38	1.30
18087347--18087389	12	3.6	12	81	6	52	39	18	13	27	1.89
18094314--18094434	61	2.0	62	91	3	199	47	2	9	40	1.48
18097922--18097947	7	3.7	7	100	0	52	30	0	46	23	1.53
18101941--18102008	17	3.8	17	71	16	57	48	1	5	44	1.36
18102096--18103438	45	30.1	43	77	13	760	25	0	25	48	1.55
18102065--18103432	68	20.5	65	76	13	716	25	0	25	48	1.54
18102073--18103432	113	12.2	112	77	12	961	25	0	25	48	1.54
18102096--18103438	23	60.3	22	74	12	839	25	0	25	48	1.55
18103061--18103092	15	2.2	15	94	5	57	21	0	21	56	1.43
18103465--18103512	25	1.9	25	95	0	87	39	12	0	47	1.41
18104824--18104862	20	2.0	20	85	10	53	53	7	2	35	1.43
18107128--18107185	27	2.3	26	82	14	68	44	0	6	48	1.29
18109222--18109330	24	4.5	25	76	11	86	34	20	26	18	1.95
18109123--18109307	98	1.8	102	80	10	229	31	21	26	21	1.98
18109222--18109356	25	5.6	25	74	13	97	33	20	27	19	1.96
18111644--18111760	56	2.1	56	96	3	216	37	25	17	19	1.93
18114036--18114073	20	1.9	19	89	5	58	60	0	5	34	1.19
18116437--18116472	18	2.0	18	94	0	63	27	19	22	30	1.98
18118578--18118657	34	2.3	35	95	2	144	36	8	2	52	1.46
18118722--18118764	18	2.4	18	78	21	54	55	0	4	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18118641--18118816	89	2.0	89	86	2	246	44	2	3	48	1.33
18118783--18118821	17	2.3	17	86	0	60	38	2	0	58	1.12
18118878--18118978	17	5.6	17	75	17	80	52	0	1	44	1.19
18118995--18119107	17	6.6	17	68	13	79	41	1	1	54	1.21
18118961--18119096	69	2.0	68	94	1	236	43	2	2	51	1.29
18118994--18119134	9	16.2	9	69	22	54	41	1	2	54	1.21
18118999--18119126	43	3.0	42	70	17	118	41	1	1	55	1.19
18119157--18119212	30	1.9	28	85	7	76	53	0	1	44	1.11
18119542--18119581	21	1.9	21	85	10	55	30	0	10	60	1.30
18127057--18127107	16	2.8	19	74	17	54	39	3	0	56	1.18
18127067--18127112	16	2.9	16	86	0	56	41	2	0	56	1.11
18135448--18135493	21	2.1	23	84	15	62	19	4	4	71	1.20
18144578--18144616	11	3.5	11	82	0	51	61	0	2	35	1.10
18144573--18144616	22	2.0	21	86	4	61	59	0	4	36	1.18
18144767--18144805	12	3.3	12	82	3	53	64	0	2	33	1.08
18144767--18144811	23	2.0	24	86	8	67	64	0	2	33	1.06
18149163--18149207	15	3.1	15	78	21	51	35	2	0	62	1.08
18149187--18149241	20	2.7	20	72	16	51	27	3	5	63	1.33
18151047--18151114	19	3.6	18	73	16	57	55	0	1	42	1.08
18151011--18151114	39	2.7	38	79	10	102	58	1	0	38	1.16
18151030--18151114	10	8.8	9	72	18	64	55	0	1	43	1.07
18151028--18151097	28	2.4	28	81	11	88	54	0	1	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18151200--18151304	10	10.9	9	68	18	52	56	0	1	40	1.17
18151201--18151281	20	4.2	20	75	19	82	55	0	1	43	1.07
18151225--18151282	17	3.2	17	80	17	64	56	0	0	43	0.99
18151704--18151774	10	7.4	10	73	13	60	35	4	1	59	1.26
18151707--18151799	46	2.0	47	83	8	118	35	5	1	58	1.28
18160690--18161354	110	6.1	107	87	6	860	39	14	15	30	1.87
18161012--18161036	11	2.3	11	100	0	50	92	0	0	8	0.40
18162313--18162474	55	3.0	54	89	4	245	24	19	1	54	1.52
18162301--18162485	55	3.4	53	81	8	221	23	21	1	52	1.55
18165485--18166123	110	6.0	109	81	12	667	31	15	14	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218