Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 59 of 218
Found at i:17990815 original size:16 final size:16
Alignment explanation
Indices: 17990794--17990826 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
17990784 CTTTTGACTA
17990794 TAAACATTCTGCACTT
1 TAAACATTCTGCACTT
17990810 TAAACATTCTGCACTT
1 TAAACATTCTGCACTT
17990826 T
1 T
17990827 CTCTATGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (16 bp):
TAAACATTCTGCACTT
Found at i:17991279 original size:13 final size:13
Alignment explanation
Indices: 17991263--17991291 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17991253 AATGAAAGAA
17991263 AAAACAGAGAATT
1 AAAACAGAGAATT
17991276 AAAACAGAGAATT
1 AAAACAGAGAATT
17991289 AAA
1 AAA
17991292 CGCGTTCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAACAGAGAATT
Found at i:17993699 original size:114 final size:114
Alignment explanation
Indices: 17993495--17994212 Score: 1032
Period size: 114 Copynumber: 6.3 Consensus size: 114
17993485 CGCTACCGAT
17993495 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACT-AAACCCAGACGACGTCGTTTGGAG
1 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
* * *
17993559 AAACTTCGGTGACATTAATGGTGTTTTTCGAATAGCGCCGCTAATAATA
66 ACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
* *
17993608 TGAGTATTAGCGGCGTTTCTGTAAAAATGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
1 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
* *
17993673 ACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCACTAATAATA
66 ACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
* * * *
17993722 TGAGTATTAGCAGCGTTTCTATAAAAATGCCGCAAAAACTAAACCCCAGACGACATCGTTTGGAG
1 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
* * *
17993787 ACACTTCGGTGACTTTAGTGGCATTTTTCTAATAGCGCCGCTAATAATA
66 ACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
* * *
17993836 TGAGTATTAGCGGCGTTTCTACAAAAACGCCAG-AAAAACTAAAACCCAAACGACTTCGTTTGGA
1 TGAGTATTAGCGGCGTTTCTATAAAAACGCC-GCAAAAACTAAAACCCAGACGACGTCGTTTGGA
* *
17993900 GACACTTTGGTGACATT--TGGCGTTTTTCGAGTAGCGCCGCTAATAATA
65 GACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
* * *
17993948 TGAGTATTAGCGACGTTTTGTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGA
1 TGAGTATTAGCGGCG-TTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGA
*
17994013 GACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATA
65 GACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
** * *
17994063 TGAGTATTAGCGGCGTTTCTATAAAAATACCGCAAAAACTAAACCCCAGACGACATCGTTTGGAG
1 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
* * * * * *
17994128 ACACTTCGGTGACTTTAGCGGCATTTTTAGATTAGCGCCGCGAATAATA
66 ACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
* * * * *
17994177 T-AGGTTTTAGCGGCGTTTTTGTTAAAGCGCCGCAAA
1 TGA-GTATTAGCGGCGTTTCTATAAAAACGCCGCAAA
17994213 TGTTCTGGGT
Statistics
Matches: 542, Mismatches: 56, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
112 43 0.08
113 97 0.18
114 358 0.66
115 44 0.08
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (114 bp):
TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
ACACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATA
Found at i:17994063 original size:227 final size:226
Alignment explanation
Indices: 17993495--17994212 Score: 998
Period size: 227 Copynumber: 3.2 Consensus size: 226
17993485 CGCTACCGAT
*
17993495 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACT-AAACCCAGACGACGTCGTTTGGAG
1 TGAGTATTAGCGACGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
* * * *
17993559 AAACTTCGGTGACATTAATGGTGTTTTTCGAATAGCGCCGCTAATAATATGAGTATTAGCGGCGT
66 ACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTATTAGCGGCGT
* *
17993624 TTCTGTAAAAATGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATT
131 TTCTATAAAAATGCCGCAAAAACTAAAACCCAGACGACATCGTTTGGAGACACTTCGGTGACATT
* *
17993689 AGTGGCGTTTTTTGAATAGCGCCACTAATAATA
196 --TGGCGTTTTTAGAATAGCGCCGCTAATAATA
* * *
17993722 TGAGTATTAGC-AGCGTTTCTATAAAAATGCCGCAAAAACTAAACCCCAGACGACATCGTTTGGA
1 TGAGTATTAGCGA-CGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGA
* *
17993786 GACACTTCGGTGACTTTAGTGGCATTTTTCT-AATAGCGCCGCTAATAATATGAGTATTAGCGGC
65 GACACTTCGGTGACATTAGTGGCGTTTTT-TGAATAGCGCCGCTAATAATATGAGTATTAGCGGC
* * * * *
17993850 GTTTCTACAAAAACGCCAG-AAAAACTAAAACCCAAACGACTTCGTTTGGAGACACTTTGGTGAC
129 GTTTCTATAAAAATGCC-GCAAAAACTAAAACCCAGACGACATCGTTTGGAGACACTTCGGTGAC
* *
17993914 ATTTGGCGTTTTTCGAGTAGCGCCGCTAATAATA
193 ATTTGGCGTTTTTAGAATAGCGCCGCTAATAATA
* *
17993948 TGAGTATTAGCGACGTTTTGTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGA
1 TGAGTATTAGCGACG-TTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGA
17994013 GACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTATTAGCGGCG
65 GACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTATTAGCGGCG
* *
17994078 TTTCTATAAAAATACCGCAAAAACTAAACCCCAGACGACATCGTTTGGAGACACTTCGGTGAC-T
130 TTTCTATAAAAATGCCGCAAAAACTAAAACCCAGACGACATCGTTTGGAGACACTTCGGTGACAT
* * *
17994142 TTAGCGGCATTTTTAGATTAGCGCCGCGAATAATA
195 TT---GGCGTTTTTAGAATAGCGCCGCTAATAATA
* * * * * *
17994177 T-AGGTTTTAGCGGCGTTTTTGTTAAAGCGCCGCAAA
1 TGA-GTATTAGCGACGTTTCTATAAAAACGCCGCAAA
17994213 TGTTCTGGGT
Statistics
Matches: 436, Mismatches: 43, Indels: 23
0.87 0.09 0.05
Matches are distributed among these distances:
226 46 0.11
227 197 0.45
228 155 0.36
229 38 0.09
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (226 bp):
TGAGTATTAGCGACGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAG
ACACTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTATTAGCGGCGT
TTCTATAAAAATGCCGCAAAAACTAAAACCCAGACGACATCGTTTGGAGACACTTCGGTGACATT
TGGCGTTTTTAGAATAGCGCCGCTAATAATA
Found at i:17994104 original size:341 final size:340
Alignment explanation
Indices: 17993495--17994194 Score: 1147
Period size: 341 Copynumber: 2.1 Consensus size: 340
17993485 CGCTACCGAT
* *
17993495 TGAGTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAACCCAGACGACGTCGTTTGGAGA
1 TGAGTATTAGCGGCGTTTCTACAAAAACGCCGCAAAAACTAAACCCAAACGACGTCGTTTGGAGA
* *
17993560 AACTTCGGTGACATTAATGGTGTTTTTCGAATAGCGCCGCTAATAATATGAGTATTAGCGGCGTT
66 AACTTCGGTGACATT-ATGGCGTTTTTCGAATAGCGCCGCTAATAATATGAGTATTAGCGACGTT
* *
17993625 TCTGTAAAAATGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACACTTCGGTGACATTA
130 TCTGTAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGAGACACTTCGGTGACATTA
*
17993690 GTGGCGTTTTTTGAATAGCGCCACTAATAATATGAGTATTAGCAGCGTTTCTATAAAAATGCCGC
195 GTGGCGTTTTTTGAATAGCGCCACTAATAATATGAGTATTAGCAGCGTTTCTATAAAAATACCGC
* **
17993755 AAAAACTAAACCCCAGACGACATCGTTTGGAGACACTTCGGTGACTTTAGTGGCATTTTTCTAAT
260 AAAAACTAAACCCCAGACGACATCGTTTGGAGACACTTCGGTGACTTTAGCGGCATTTTTAGAAT
*
17993820 AGCGCCGCTAATAATA
325 AGCGCCGCGAATAATA
*
17993836 TGAGTATTAGCGGCGTTTCTACAAAAACGCCAG-AAAAACTAAAACCCAAACGACTTCGTTTGGA
1 TGAGTATTAGCGGCGTTTCTACAAAAACGCC-GCAAAAACT-AAACCCAAACGACGTCGTTTGGA
* * *
17993900 GACACTTTGGTGACATT-TGGCGTTTTTCGAGTAGCGCCGCTAATAATATGAGTATTAGCGACGT
64 GAAACTTCGGTGACATTATGGCGTTTTTCGAATAGCGCCGCTAATAATATGAGTATTAGCGACGT
17993964 TT-TGTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGAGACACTTCGGTGACA
129 TTCTG--TAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGAGACACTTCGGTGACA
* *
17994028 TTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGAGTATTAGCGGCGTTTCTATAAAAATAC
192 TTAGTGGCGTTTTTTGAATAGCGCCACTAATAATATGAGTATTAGCAGCGTTTCTATAAAAATAC
17994093 CGCAAAAACTAAACCCCAGACGACATCGTTTGGAGACACTTCGGTGACTTTAGCGGCATTTTTAG
257 CGCAAAAACTAAACCCCAGACGACATCGTTTGGAGACACTTCGGTGACTTTAGCGGCATTTTTAG
*
17994158 ATTAGCGCCGCGAATAATA
322 AATAGCGCCGCGAATAATA
*
17994177 T-AGGTTTTAGCGGCGTTT
1 TGA-GTATTAGCGGCGTTT
17994195 TTGTTAAAGC
Statistics
Matches: 335, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
339 2 0.01
340 47 0.14
341 249 0.74
342 37 0.11
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (340 bp):
TGAGTATTAGCGGCGTTTCTACAAAAACGCCGCAAAAACTAAACCCAAACGACGTCGTTTGGAGA
AACTTCGGTGACATTATGGCGTTTTTCGAATAGCGCCGCTAATAATATGAGTATTAGCGACGTTT
CTGTAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGAGACACTTCGGTGACATTAG
TGGCGTTTTTTGAATAGCGCCACTAATAATATGAGTATTAGCAGCGTTTCTATAAAAATACCGCA
AAAACTAAACCCCAGACGACATCGTTTGGAGACACTTCGGTGACTTTAGCGGCATTTTTAGAATA
GCGCCGCGAATAATA
Found at i:17994981 original size:14 final size:15
Alignment explanation
Indices: 17994955--17994985 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
17994945 GTACTATATA
17994955 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
17994970 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
17994984 TA
1 TA
17994986 AGGGTTGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:17995068 original size:15 final size:16
Alignment explanation
Indices: 17995048--17995086 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17995038 ACGTTTGTGG
17995048 TTAAGAG-TTAGGGAT
1 TTAAGAGTTTAGGGAT
*
17995063 TTAAGAGGTTTAGGGTT
1 TTAAGA-GTTTAGGGAT
17995080 TTAAGAG
1 TTAAGAG
17995087 GGCCGGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 6 0.29
16 2 0.10
17 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (16 bp):
TTAAGAGTTTAGGGAT
Found at i:17995077 original size:17 final size:17
Alignment explanation
Indices: 17995055--17995087 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17995045 TGGTTAAGAG
17995055 TTAGGGATTTAAGAGGT
1 TTAGGGATTTAAGAGGT
*
17995072 TTAGGGTTTTAAGAGG
1 TTAGGGATTTAAGAGG
17995088 GCCGGGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (17 bp):
TTAGGGATTTAAGAGGT
Found at i:17995452 original size:13 final size:13
Alignment explanation
Indices: 17995436--17995473 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
17995426 AATTTAAATT
*
17995436 TAAAATACAAAAA
1 TAAAATATAAAAA
17995449 TAAAA-ATAAAAA
1 TAAAATATAAAAA
*
17995461 TGAAATATAAAAA
1 TAAAATATAAAAA
17995474 CTCTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (13 bp):
TAAAATATAAAAA
Found at i:17995945 original size:76 final size:76
Alignment explanation
Indices: 17995842--17996094 Score: 226
Period size: 76 Copynumber: 3.2 Consensus size: 76
17995832 CATTACGCCG
* ** *
17995842 AAAACGCCGCAAA-TTGTCGGGGTTTTTTTAATGAAACGGTGTCG-TTTACATTAAGGGCATTAG
1 AAAACGCCGCAAAGTTTTCGGGG-TTTTTTAACAAAACGGTGTCGTTTTACATTAACGGCATTAG
17995905 TGGCGCTATGGT
65 TGGCGCTATGGT
* * *
17995917 AAAAGCGCCGCAAAGTTTTCGGGGTTTTTAAACCAAACGGTGTCGTTTTTCCTGGCACATTAATG
1 AAAA-CGCCGCAAAGTTTTCGGGGTTTTTTAACAAAACGGTGTCG--TTT--T---ACATTAACG
*
17995982 ACATTAGTGGCGCTATGGT
58 GCATTAGTGGCGCTATGGT
* * * * *
17996001 GAAAACGCCGCAAAGTTTT--GGGTTTTTTAAACAAAACGGTGTTGTTTTGCCTTTACGGTATTA
1 -AAAACGCCGCAAAGTTTTCGGGGTTTTTT-AACAAAACGGTGTCGTTTTACATTAACGGCATTA
* *
17996064 GTGGCGCTGTGTT
64 GTGGCGCTATGGT
*
17996077 AAAAACGCCGCAACGTTT
1 -AAAACGCCGCAAAGTTT
17996095 CATTCTGGTT
Statistics
Matches: 147, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
75 4 0.03
76 63 0.43
77 8 0.05
79 3 0.02
81 4 0.03
82 8 0.05
83 13 0.09
84 40 0.27
85 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (76 bp):
AAAACGCCGCAAAGTTTTCGGGGTTTTTTAACAAAACGGTGTCGTTTTACATTAACGGCATTAGT
GGCGCTATGGT
Found at i:17996007 original size:160 final size:161
Alignment explanation
Indices: 17995780--17996094 Score: 357
Period size: 160 Copynumber: 2.0 Consensus size: 161
17995770 ATTTTATCAT
* * * *
17995780 TTTTGTAAACAAAATGGTGTCGTTTTACCTGGCATATTAACGGCAATAGTGGCATTACGCCGAAA
1 TTTTGTAAACAAAACGGTGTCGTTTTACCTGGCACATTAACGACAATAGTGGCACTACGCCGAAA
* ** *
17995845 ACGCCGCAAA-TTGTCGGGGTTTTTTTAATGAAACGGTGTCG-TTTACATTAAGGGCATTAGTGG
66 ACGCCGCAAAGTT-T-GGGGTTTTTTAAACAAAACGGTGTCGTTTTACATTAACGGCATTAGTGG
*
17995908 CGCTATGGTAAAAGCGCCGCAAAGTTTTCGGGG
129 CGCTATGGTAAAAACGCCGCAAAGTTTTCGGGG
* * * * * * **
17995941 TTTT-TAAACCAAACGGTGTCGTTTTTCCTGGCACATTAATGACATTAGTGGCGCTATGGTGAAA
1 TTTTGTAAACAAAACGGTGTCGTTTTACCTGGCACATTAACGACAATAGTGGCACTACGCCGAAA
* * * * * *
17996005 ACGCCGCAAAGTTTTGGGTTTTTTAAACAAAACGGTGTTGTTTTGCCTTTACGGTATTAGTGGCG
66 ACGCCGCAAAGTTTGGGGTTTTTTAAACAAAACGGTGTCGTTTTACATTAACGGCATTAGTGGCG
* * *
17996070 CTGTGTTAAAAACGCCGCAACGTTT
131 CTATGGTAAAAACGCCGCAAAGTTT
17996095 CATTCTGGTT
Statistics
Matches: 126, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
159 21 0.17
160 99 0.79
161 6 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (161 bp):
TTTTGTAAACAAAACGGTGTCGTTTTACCTGGCACATTAACGACAATAGTGGCACTACGCCGAAA
ACGCCGCAAAGTTTGGGGTTTTTTAAACAAAACGGTGTCGTTTTACATTAACGGCATTAGTGGCG
CTATGGTAAAAACGCCGCAAAGTTTTCGGGG
Found at i:17997190 original size:9 final size:9
Alignment explanation
Indices: 17997176--17997576 Score: 71
Period size: 9 Copynumber: 41.8 Consensus size: 9
17997166 TTAATTAATA
17997176 TACATAAAT
1 TACATAAAT
*
17997185 TACATAAGT
1 TACATAAAT
17997194 TACATTAATATT
1 TACA-TAA-A-T
17997206 ATACATAAAT
1 -TACATAAAT
*
17997216 TACATAACT
1 TACATAAAT
*
17997225 TA-ATTAAT
1 TACATAAAT
*
17997233 TA-AT-ATT
1 TACATAAAT
*
17997240 ATACATAACT
1 -TACATAAAT
*
17997250 TGCATTAATATT
1 TACA-TAA-A-T
17997262 ATACATAAAT
1 -TACATAAAT
*
17997272 TACATAACT
1 TACATAAAT
*
17997281 TA-ATTAAT
1 TACATAAAT
*
17997289 TA-AT-ATT
1 TACATAAAT
*
17997296 ATACATAACT
1 -TACATAAAT
*
17997306 TACATTAGTATT
1 TACA-TA--AAT
17997318 ATACATAAAT
1 -TACATAAAT
*
17997328 TACATAACT
1 TACATAAAT
17997337 TA-ATTAATTAT
1 TACA-TAA--AT
17997348 TACACATAAAT
1 T--ACATAAAT
***
17997359 TACATTGCT
1 TACATAAAT
17997368 TACAGTAATATT
1 TACA-TAA-A-T
17997380 ATACATAAAT
1 -TACATAAAT
*
17997390 TACATAACT
1 TACATAAAT
*
17997399 TA-ATTAAT
1 TACATAAAT
*
17997407 TA-AT-ATT
1 TACATAAAT
*
17997414 ATACATAACT
1 -TACATAAAT
*
17997424 TACATAACT
1 TACATAAAT
*
17997433 TAC--AACT
1 TACATAAAT
*
17997440 TACATAACT
1 TACATAAAT
17997449 TACATTTTTATAAT
1 TACA----TA-AAT
*
17997463 TATTCTTAAAT
1 TA--CATAAAT
*
17997474 TACATAACT
1 TACATAAAT
17997483 TACATTAATATT
1 TACA-TAA-A-T
17997495 ATACATAAAT
1 -TACATAAAT
*
17997505 TACATAACT
1 TACATAAAT
*
17997514 TA-ATTAAT
1 TACATAAAT
17997522 TA-AT--A-
1 TACATAAAT
17997527 TACATAAAT
1 TACATAAAT
17997536 TACATAACTAAT
1 TACAT-A--AAT
17997548 TACATTAATATT
1 TACA-TAA-A-T
17997560 ATACATAAAT
1 -TACATAAAT
17997570 TACATAA
1 TACATAA
17997577 CTTTGTTAAT
Statistics
Matches: 299, Mismatches: 38, Indels: 110
0.67 0.09 0.25
Matches are distributed among these distances:
5 2 0.01
6 3 0.01
7 13 0.04
8 40 0.13
9 128 0.43
10 27 0.09
11 16 0.05
12 34 0.11
13 30 0.10
14 5 0.02
16 1 0.00
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (9 bp):
TACATAAAT
Found at i:17997256 original size:56 final size:56
Alignment explanation
Indices: 17997185--17997663 Score: 552
Period size: 56 Copynumber: 8.2 Consensus size: 56
17997175 ATACATAAAT
*
17997185 TACATAAGTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
*
17997241 TACATAACTTGCATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
* * *
17997297 TACATAACTTACATTAGTATTATACATAAATTACATAACTTAATTAATTATTACACATAAA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATT-A--ATTA-ATAT-TA
** *
17997358 TTACATTGCTTACAGTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
1 -TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
** * * * * *
17997415 TACATAACTTACA-TAACTTACAACTTACATAACTTACAT--TTTTA-TAATTATTCTTAAA
1 TACATAACTTACATTAA--TATTA--TACATAAATTACATAACTTAATTAATTAATATT--A
17997473 TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATACATAAA
1 -TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATAT---T--A
**
17997535 TTACATAACTAATTACATTAATATTATACATAAATTACATAACTTTGTTAATTAATATTA
1 -TACATAAC---TTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
* * *
17997595 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTA
1 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
17997651 TACATAACTTACA
1 TACATAACTTACA
17997664 ACTTACATAA
Statistics
Matches: 367, Mismatches: 33, Indels: 46
0.82 0.07 0.10
Matches are distributed among these distances:
55 3 0.01
56 188 0.51
57 8 0.02
58 10 0.03
59 50 0.14
60 7 0.02
61 2 0.01
62 55 0.15
65 44 0.12
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.41
Consensus pattern (56 bp):
TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTA
Found at i:17997317 original size:22 final size:22
Alignment explanation
Indices: 17997282--17997332 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
17997272 TACATAACTT
17997282 AATTA-ATTAATATTATACATA
1 AATTACATTAATATTATACATA
* *
17997303 ACTTACATTAGTATTATACATA
1 AATTACATTAATATTATACATA
17997325 AATTACAT
1 AATTACAT
17997333 AACTTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (22 bp):
AATTACATTAATATTATACATA
Found at i:17997441 original size:16 final size:16
Alignment explanation
Indices: 17997420--17997452 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
17997410 TATTATACAT
17997420 AACTTACATAACTTAC
1 AACTTACATAACTTAC
17997436 AACTTACATAACTTAC
1 AACTTACATAACTTAC
17997452 A
1 A
17997453 TTTTTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:17997465 original size:50 final size:50
Alignment explanation
Indices: 17997389--17997579 Score: 145
Period size: 50 Copynumber: 3.9 Consensus size: 50
17997379 TATACATAAA
*
17997389 TTACATAACTTAATTAATTAATATTATACATAACTTACATAACTTACAAC
1 TTACATAACTTAATTAATTAATATTATACATAAATTACATAACTTACAAC
* * *
17997439 TTACATAACTTACATT--TTTATAATTATTCTTAAATTACATAACTTAC-A-
1 TTACATAACTTA-ATTAATTAAT-ATTATACATAAATTACATAACTTACAAC
* * * * *
17997487 TTA-AT-ATTATACATAAATTACATAACT-TA-ATTAATTA-ATATACATA-AA-
1 TTACATAACT-TA-ATTAATTA-AT-ATTATACATAAATTACATA-ACTTACAAC
17997535 TTACATAAC-TAATTACATTAATATTATACATAAATTACATAACTT
1 TTACATAACTTAATTA-ATTAATATTATACATAAATTACATAACTT
17997580 TGTTAATTAA
Statistics
Matches: 110, Mismatches: 17, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
46 4 0.04
47 17 0.15
48 33 0.30
49 13 0.12
50 40 0.36
51 3 0.03
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (50 bp):
TTACATAACTTAATTAATTAATATTATACATAAATTACATAACTTACAAC
Found at i:17997573 original size:22 final size:22
Alignment explanation
Indices: 17997474--17997574 Score: 72
Period size: 22 Copynumber: 4.6 Consensus size: 22
17997464 ATTCTTAAAT
*
17997474 TACATAACTTACATTAATATTA
1 TACATAAATTACATTAATATTA
*
17997496 TACATAAATTACA-TAACT-TAA
1 TACATAAATTACATTAA-TATTA
*
17997517 TTA-ATTAATATACA-TAA-A-T-
1 -TACATAAAT-TACATTAATATTA
17997536 TACATAACTAATTACATTAATATTA
1 TACAT-A--AATTACATTAATATTA
17997561 TACATAAATTACAT
1 TACATAAATTACAT
17997575 AACTTTGTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 24
0.68 0.05 0.26
Matches are distributed among these distances:
18 2 0.03
19 2 0.03
21 14 0.23
22 36 0.58
23 1 0.02
24 2 0.03
25 5 0.08
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.39
Consensus pattern (22 bp):
TACATAAATTACATTAATATTA
Found at i:17997589 original size:34 final size:34
Alignment explanation
Indices: 17997439--17997803 Score: 213
Period size: 34 Copynumber: 11.1 Consensus size: 34
17997429 AACTTACAAC
* * *
17997439 TTACATAACTTACATT--TTTATAATTATTCTTAAA
1 TTACATAACTTA-ATTAATTAAT-ATTATACATAAA
*
17997473 TTACATAACTT-A--CATTAATATTATACATAAA
1 TTACATAACTTAATTAATTAATATTATACATAAA
17997504 TTACATAACTTAATTAATT-A-A-TATACATAAA
1 TTACATAACTTAATTAATTAATATTATACATAAA
17997535 TTACATAAC-TAATTACATTAATATTATACATAAA
1 TTACATAACTTAATTA-ATTAATATTATACATAAA
** *
17997569 TTACATAACTTTGTTAATTAATATTATACATAAC
1 TTACATAACTTAATTAATTAATATTATACATAAA
*
17997603 TTACATTAA--T-ATTATACTTAA-A-T-TACATAAG
1 TTACA-TAACTTAATTA-A-TTAATATTATACATAAA
** * *
17997634 TTAGTTAA-TTAA-T-ATT-ATA-CATAACTTACAA
1 TTACATAACTTAATTAATTAATATTAT-ACATA-AA
** * * *
17997665 CTTACATAACTTACATTTTTTTA-ATTATTCGTAAA
1 -TTACATAACTTA-ATTAATTAATATTATACATAAA
* * * * *
17997700 TTACATAACTTACTTAATT-TTCATAATAAATAAC
1 TTACATAACTTAATTAATTAAT-ATTATACATAAA
* *
17997734 TTACATAACTT-A--CATTAATATTATACTTAAA
1 TTACATAACTTAATTAATTAATATTATACATAAA
* * *
17997765 TTACATAAGTTAGTTAATTAATATTATACATAAC
1 TTACATAACTTAATTAATTAATATTATACATAAA
17997799 TTACA
1 TTACA
17997804 ACTTACATAA
Statistics
Matches: 258, Mismatches: 41, Indels: 64
0.71 0.11 0.18
Matches are distributed among these distances:
27 1 0.00
28 3 0.01
29 2 0.01
30 13 0.05
31 77 0.30
32 20 0.08
33 12 0.05
34 111 0.43
35 10 0.04
36 6 0.02
37 3 0.01
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (34 bp):
TTACATAACTTAATTAATTAATATTATACATAAA
Found at i:17997613 original size:22 final size:22
Alignment explanation
Indices: 17997585--17997630 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
17997575 AACTTTGTTA
*
17997585 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAAATTAC
*
17997607 ATTAATATTATACTTAAATTAC
1 ATTAATATTATACATAAATTAC
17997629 AT
1 AT
17997631 AAGTTAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAATATTATACATAAATTAC
Found at i:17997739 original size:140 final size:139
Alignment explanation
Indices: 17997595--17997884 Score: 571
Period size: 140 Copynumber: 2.1 Consensus size: 139
17997585 ATTAATATTA
17997595 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATACATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATACATAACT
17997660 TACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAACTTACTTAATTTTCATA
66 TACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAACTTACTTAA-TTTCATA
17997725 ATAAATAACT
130 ATAAATAACT
17997735 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATACATAACT
1 TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATACATAACT
17997800 TACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAACTTACTTAATTTCATAA
66 TACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAACTTACTTAATTTCATAA
17997865 TAAATAACT
131 TAAATAACT
17997874 TACATAACTTA
1 TACATAACTTA
17997885 TATGACTTAC
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
139 28 0.19
140 122 0.81
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.42
Consensus pattern (139 bp):
TACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATACATAACT
TACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAACTTACTTAATTTCATAA
TAAATAACT
Found at i:17997741 original size:9 final size:9
Alignment explanation
Indices: 17997700--17997906 Score: 71
Period size: 9 Copynumber: 23.8 Consensus size: 9
17997690 TATTCGTAAA
17997700 TTACATAAC
1 TTACATAAC
* *
17997709 TTACTTAAT
1 TTACATAAC
*
17997718 TTTCATAA-
1 TTACATAAC
*
17997726 -TAAATAAC
1 TTACATAAC
17997734 TTACATAAC
1 TTACATAAC
*
17997743 TTACATTAATAT
1 TTACA-T-A-AC
* *
17997755 TATACTTAAA
1 T-TACATAAC
*
17997765 TTACATAAG
1 TTACATAAC
**
17997774 TTAGTTAA-
1 TTACATAAC
*
17997782 TTA-AT-AT
1 TTACATAAC
17997789 TATACATAAC
1 T-TACATAAC
17997799 TTAC--AAC
1 TTACATAAC
17997806 TTACATAAC
1 TTACATAAC
***
17997815 TTACATTTTT
1 TTACA-TAAC
*
17997825 TTA-ATTA-
1 TTACATAAC
* *
17997832 TT-CGTAAA
1 TTACATAAC
17997840 TTACATAAC
1 TTACATAAC
*
17997849 TTACTTAA-
1 TTACATAAC
*
17997857 TTTCATAA-
1 TTACATAAC
*
17997865 -TAAATAAC
1 TTACATAAC
17997873 TTACATAAC
1 TTACATAAC
* *
17997882 TTATATGAC
1 TTACATAAC
17997891 TTACATAAC
1 TTACATAAC
17997900 TTACATA
1 TTACATA
17997907 GCATAATTTT
Statistics
Matches: 146, Mismatches: 34, Indels: 36
0.68 0.16 0.17
Matches are distributed among these distances:
6 1 0.01
7 23 0.16
8 15 0.10
9 90 0.62
10 9 0.06
11 2 0.01
12 3 0.02
13 3 0.02
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.42
Consensus pattern (9 bp):
TTACATAAC
Found at i:17997937 original size:25 final size:25
Alignment explanation
Indices: 17997908--17997963 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
17997898 ACTTACATAG
* *
17997908 CATAATTTTCATAATACACAACTTA
1 CATAATTTGCATAATAAACAACTTA
** *
17997933 CATAATTTGGGTAATAAATAACTTA
1 CATAATTTGCATAATAAACAACTTA
17997958 CATAAT
1 CATAAT
17997964 ACATAACTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (25 bp):
CATAATTTGCATAATAAACAACTTA
Found at i:17997963 original size:16 final size:16
Alignment explanation
Indices: 17997944--17997977 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
17997934 ATAATTTGGG
17997944 TAATAAATAACTTACA
1 TAATAAATAACTTACA
*
17997960 TAATACATAACTTACA
1 TAATAAATAACTTACA
17997976 TA
1 TA
17997978 GCTTAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATAAATAACTTACA
Found at i:18003533 original size:66 final size:66
Alignment explanation
Indices: 18003393--18003562 Score: 164
Period size: 66 Copynumber: 2.6 Consensus size: 66
18003383 AGCAAATTAC
* * ** * *
18003393 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
1 ACAACTTAAAGCAGATGCAGTAGCGAGAGAAGCTGAGGTTCAAAAAAGATATAAAGAACTCCAGC
18003458 T
66 T
* * * *
18003459 ACAACTTAAGGCAGATGCAGTAGCGAGTGAAGCTGAGGTTCAACGAAAG-TATAAAGAACTTCAG
1 ACAACTTAAAGCAGATGCAGTAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATAAAGAACTCCAG
18003523 C-
65 CT
* * * * * *
18003524 AGTAGCTTAAAGCAGATGCGGCAGCAAGAGAAGCAGAGG
1 A-CAACTTAAAGCAGATGCAGTAGCGAGAGAAGCTGAGG
18003563 CGGCAGCGAG
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
65 1 0.01
66 79 0.94
67 4 0.05
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAGTAGCGAGAGAAGCTGAGGTTCAAAAAAGATATAAAGAACTCCAGC
T
Found at i:18003606 original size:21 final size:21
Alignment explanation
Indices: 18003533--18003645 Score: 118
Period size: 21 Copynumber: 5.4 Consensus size: 21
18003523 CAGTAGCTTA
* * * *
18003533 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
* *
18003554 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
18003575 AAGTACAGGCTGTAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
**
18003596 AAGCAGAGGCTATAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
*
18003617 AAGTAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
18003638 AAGCAGAG
1 AAGCAGAG
18003646 CAGCGTCAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 78 1.00
ACGTcount: A:0.34, C:0.16, G:0.43, T:0.07
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:18003613 original size:42 final size:42
Alignment explanation
Indices: 18003544--18003645 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
18003534 AGCAGATGCG
* * *
18003544 GCAGCAAGAGAAGCAGAGGCGGCAGCGAGAGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGCGACAGCGAGAGAAGTACAGGCT
* * * * *
18003586 GTAGCGAGGGAAGCAGAGGCTATAGCGAGGGAAGTAGAGGCT
1 GCAGCGAGGGAAGCAGAGGCGACAGCGAGAGAAGTACAGGCT
18003628 GCAGCGAGGGAAGCAGAG
1 GCAGCGAGGGAAGCAGAG
18003646 CAGCGTCAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.44, T:0.07
Consensus pattern (42 bp):
GCAGCGAGGGAAGCAGAGGCGACAGCGAGAGAAGTACAGGCT
Found at i:18004044 original size:44 final size:43
Alignment explanation
Indices: 18004016--18004205 Score: 227
Period size: 43 Copynumber: 4.4 Consensus size: 43
18004006 GTTTTTTGGT
* *
18004016 AAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAA
1 AAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGG-G
* *
18004060 AAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGG
* * * * * * *
18004103 GAAAGCGCCGCTAAACATTAGGATCTTTTGTGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGG
** * * *
18004146 CGAGGCGCCGCTATAGATCAGGGTCTTTTGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGG
18004189 AAAAGCGCCGCTAAAGA
1 AAAAGCGCCGCTAAAGA
18004206 CCCTAAACTT
Statistics
Matches: 120, Mismatches: 26, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
43 81 0.68
44 39 0.32
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGG
Found at i:18004403 original size:22 final size:21
Alignment explanation
Indices: 18004370--18004414 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
18004360 ATTTGCGGCG
*
18004370 CTAAAAAACGCCGCTAAAGGC
1 CTAAAAAACGCCGCTAAAAGC
18004391 CTAAAAAAGCGCCGCTAAAAGC
1 CTAAAAAA-CGCCGCTAAAAGC
18004413 CT
1 CT
18004415 GTTTTGGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.42, C:0.29, G:0.18, T:0.11
Consensus pattern (21 bp):
CTAAAAAACGCCGCTAAAAGC
Found at i:18004669 original size:41 final size:41
Alignment explanation
Indices: 18004613--18004807 Score: 277
Period size: 41 Copynumber: 4.8 Consensus size: 41
18004603 TTTTATCATT
*
18004613 ATTAGCGGCGCTTTTTCAAAAACGCCGTTAAAGGTCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTCCGAGC
* *
18004654 ATTAGCGGCGCTTTTTCAAAAACACCGCTAAAGGGCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTCCGAGC
* * ** *
18004695 ATTAGCAGCGCTTTTTTAAAAA-AACGCGAAA-GTCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGT-CCGAGC
* *
18004735 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTCCGAGC
18004776 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
18004808 TGCCCTAAAA
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 32 0.24
41 101 0.75
42 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTCCGAGC
Found at i:18004754 original size:81 final size:81
Alignment explanation
Indices: 18004613--18004797 Score: 259
Period size: 81 Copynumber: 2.3 Consensus size: 81
18004603 TTTTATCATT
* *
18004613 ATTAGCGGCGCTTTTTC--AAAAACGCCGTTAAAGGT-CCGAGCATTAGCGGCGCTTTTTCAAAA
1 ATTAGCAGCGCTTTTTCAAAAAAACG-CG--AAA-GTCCCGAGCATTAGCGGCGCTTTCTCAAAA
*
18004675 ACACCGCTAAAGGGCCGAGC
62 ACACCGCTAAAGGCCCGAGC
* *
18004695 ATTAGCAGCGCTTTTTTAAAAAAACGCGAAAGTCCCGAGCATTAGCGGCGCTTTCTCAAAAACGC
1 ATTAGCAGCGCTTTTTCAAAAAAACGCGAAAGTCCCGAGCATTAGCGGCGCTTTCTCAAAAACAC
18004760 CGCTAAAGGCCCGAGC
66 CGCTAAAGGCCCGAGC
*
18004776 ATTAGCGGCGCTTTTTCAAAAA
1 ATTAGCAGCGCTTTTTCAAAAA
18004798 CGCCGCTAAA
Statistics
Matches: 93, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
80 2 0.02
81 67 0.72
82 15 0.16
83 2 0.02
84 7 0.08
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (81 bp):
ATTAGCAGCGCTTTTTCAAAAAAACGCGAAAGTCCCGAGCATTAGCGGCGCTTTCTCAAAAACAC
CGCTAAAGGCCCGAGC
Found at i:18009106 original size:14 final size:14
Alignment explanation
Indices: 18009069--18009106 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
18009059 CTAGAAAAGT
18009069 AAGTCATTTTCTAG
1 AAGTCATTTTCTAG
* *
18009083 AAAT-ATTTTCTGG
1 AAGTCATTTTCTAG
18009096 AAGTCATTTTC
1 AAGTCATTTTC
18009107 AATGAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (14 bp):
AAGTCATTTTCTAG
Found at i:18009483 original size:20 final size:19
Alignment explanation
Indices: 18009440--18009494 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 19
18009430 GGCAAACATA
*
18009440 AATTTAAAAATTTAAAATT
1 AATTTAAAAATATAAAATT
*
18009459 -TTTTAAAAATATATAAATT
1 AATTTAAAAATATA-AAATT
18009478 AATTTATAAAAGTATAA
1 AATTTA-AAAA-TATAA
18009495 TTTTTTGGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 11 0.38
19 5 0.17
20 4 0.14
21 5 0.17
22 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
AATTTAAAAATATAAAATT
Found at i:18009983 original size:20 final size:20
Alignment explanation
Indices: 18009928--18009990 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
18009918 TATTTTTTTA
18009928 ATTTAAAAA-ATTTTAAAAT
1 ATTTAAAAATATTTTAAAAT
* * *
18009947 ATATATAACTATTTTAAAAT
1 ATTTAAAAATATTTTAAAAT
* *
18009967 TTTTAAAAATATATTAAAAAT
1 ATTTAAAAATAT-TTTAAAAT
18009988 ATT
1 ATT
18009991 ATATTTTACA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 6 0.18
20 18 0.55
21 9 0.27
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAAAAATATTTTAAAAT
Found at i:18012843 original size:22 final size:21
Alignment explanation
Indices: 18012794--18012839 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
18012784 ACATGACATG
*
18012794 AAAATATCAAAAATAAATAAT
1 AAAATAACAAAAATAAATAAT
18012815 AAAATAACAAGAAATAAA-AAT
1 AAAATAACAA-AAATAAATAAT
18012836 AAAA
1 AAAA
18012840 ATAAAATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAATAACAAAAATAAATAAT
Found at i:18015754 original size:43 final size:43
Alignment explanation
Indices: 18015655--18015754 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
18015645 TTTGTCTTGG
* * *
18015655 TGTGGTTGCTTCCACGTTGCTTCCTTTTTTGTCTGGATATAAA
1 TGTGGTTACTTCCACCTTGCTTCCTTTTTTGTCTGGATACAAA
* * * *
18015698 TGTGGTTAGTTCCACCTTGCTTCCTTTTTTGTTTGGATGCAAT
1 TGTGGTTACTTCCACCTTGCTTCCTTTTTTGTCTGGATACAAA
* *
18015741 TGTGTTTTCTTCCA
1 TGTGGTTACTTCCA
18015755 TGTAACTTCT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.12, C:0.19, G:0.20, T:0.49
Consensus pattern (43 bp):
TGTGGTTACTTCCACCTTGCTTCCTTTTTTGTCTGGATACAAA
Found at i:18022865 original size:14 final size:14
Alignment explanation
Indices: 18022846--18022880 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18022836 GGTCTAAGAA
*
18022846 ATGGGCCAAACTTG
1 ATGGGCCAAACCTG
18022860 ATGGGCCAAACCTG
1 ATGGGCCAAACCTG
18022874 ATGGGCC
1 ATGGGCC
18022881 TGCTAGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.31, T:0.17
Consensus pattern (14 bp):
ATGGGCCAAACCTG
Found at i:18036563 original size:29 final size:27
Alignment explanation
Indices: 18036531--18036584 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 27
18036521 CTATTATATA
*
18036531 ATAATGATAATAGTTATATAATAATAGTT
1 ATAATGATAATA--AATATAATAATAGTT
18036560 ATAATGATAATAAATATAATAATAG
1 ATAATGATAATAAATATAATAATAG
18036585 AATAGTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 12 0.50
29 12 0.50
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (27 bp):
ATAATGATAATAAATATAATAATAGTT
Found at i:18041112 original size:41 final size:42
Alignment explanation
Indices: 18041055--18041142 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 42
18041045 AAAATACAGT
**
18041055 AAAAGGTTAGAGCTATAGCGGTGTTTCT-TTATAAACGCCAC
1 AAAAGGTTAGAGCTATAGCGGCATTTCTATTATAAACGCCAC
* * *
18041096 AAAAGGTTAGGGCTATAGCGGCATTTTTATTATAAATGCCAC
1 AAAAGGTTAGAGCTATAGCGGCATTTCTATTATAAACGCCAC
18041138 AAAAG
1 AAAAG
18041143 AAAGAAATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 24 0.59
42 17 0.41
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (42 bp):
AAAAGGTTAGAGCTATAGCGGCATTTCTATTATAAACGCCAC
Found at i:18041272 original size:26 final size:26
Alignment explanation
Indices: 18041236--18041290 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
18041226 CTTTTTTTCA
18041236 CCCAAATCAGTTCCCACCTCCCCCTC
1 CCCAAATCAGTTCCCACCTCCCCCTC
18041262 CCCAAATCAGTTCCCACCTCCCCCTC
1 CCCAAATCAGTTCCCACCTCCCCCTC
18041288 CCC
1 CCC
18041291 CTCCCCCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.60, G:0.04, T:0.18
Consensus pattern (26 bp):
CCCAAATCAGTTCCCACCTCCCCCTC
Found at i:18042172 original size:12 final size:12
Alignment explanation
Indices: 18042155--18042180 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18042145 GTAAAAAAGA
18042155 TGATTGGAATAG
1 TGATTGGAATAG
18042167 TGATTGGAATAG
1 TGATTGGAATAG
18042179 TG
1 TG
18042181 TTAAGAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (12 bp):
TGATTGGAATAG
Found at i:18045626 original size:43 final size:42
Alignment explanation
Indices: 18045578--18045718 Score: 201
Period size: 43 Copynumber: 3.3 Consensus size: 42
18045568 TCTGATATGG
* * * *
18045578 TCTTTAGCGACGCTTCTACTAAAAACGTCACTATAGAACATGA
1 TCTTTAGCGGCGCTTCTACTAAAAAC-ACGCTAAAGAACATGA
*
18045621 TCTTTAGCGGCGCTTCTACTAAAAACACTGCTAAAGAACATTA
1 TCTTTAGCGGCGCTTCTACTAAAAACAC-GCTAAAGAACATGA
*
18045664 TCTTTAGTGGCGCTTCTACTAAAAACACCGCTAAAGAACATGA
1 TCTTTAGCGGCGCTTCTACTAAAAACA-CGCTAAAGAACATGA
18045707 TCTTTAGCGGCG
1 TCTTTAGCGGCG
18045719 TTTTAATAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 86 0.98
44 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTCTACTAAAAACACGCTAAAGAACATGA
Found at i:18049041 original size:15 final size:15
Alignment explanation
Indices: 18049009--18049043 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
18048999 GTATTATATA
**
18049009 ATAATGATAATAGTT
1 ATAATGATAATAAAT
18049024 ATAATGATAATAAAT
1 ATAATGATAATAAAT
18049039 ATAAT
1 ATAAT
18049044 AATAGAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (15 bp):
ATAATGATAATAAAT
Found at i:18051646 original size:11 final size:10
Alignment explanation
Indices: 18051593--18051666 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
18051583 CCAATTCAAG
*
18051593 TTTTTATGAT
1 TTTTTATAAT
*
18051603 TTTTTTTAA-
1 TTTTTATAAT
* *
18051612 TTTTAATAAG
1 TTTTTATAAT
*
18051622 TTTATATCAA-
1 TTTTTAT-AAT
*
18051632 TTTTAATAAT
1 TTTTTATAAT
18051642 TTTTTATATAT
1 TTTTTATA-AT
18051653 TTTTTATAAAT
1 TTTTTAT-AAT
18051664 TTT
1 TTT
18051667 AAAAAATTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
9 9 0.18
10 24 0.48
11 16 0.32
12 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:18051654 original size:20 final size:19
Alignment explanation
Indices: 18051601--18051655 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
18051591 AGTTTTTATG
*
18051601 ATTTTTTTTAATTTTAATA
1 ATTTTTTATAATTTTAATA
* *
18051620 AGTTTATATCAATTTTAATA
1 ATTTTTTAT-AATTTTAATA
18051640 ATTTTTTATATATTTT
1 ATTTTTTATA-ATTTT
18051656 TTATAAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 7 0.24
20 22 0.76
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
ATTTTTTATAATTTTAATA
Found at i:18051750 original size:8 final size:8
Alignment explanation
Indices: 18051737--18051802 Score: 51
Period size: 8 Copynumber: 7.5 Consensus size: 8
18051727 GTTTTATTAA
18051737 TTTTATAT
1 TTTTATAT
18051745 TTTTATAAT
1 TTTTAT-AT
* *
18051754 TTACTAGAAT
1 TT-TTA-TAT
18051764 TTTTATAT
1 TTTTATAT
18051772 TTTTATAAT
1 TTTTAT-AT
*
18051781 ATTTATATTT
1 -TTT-TATAT
18051791 TTTTATAT
1 TTTTATAT
18051799 TTTT
1 TTTT
18051803 TAAAATATTA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
8 22 0.48
9 11 0.24
10 10 0.22
11 3 0.07
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (8 bp):
TTTTATAT
Found at i:18051755 original size:45 final size:44
Alignment explanation
Indices: 18051706--18051841 Score: 120
Period size: 46 Copynumber: 3.0 Consensus size: 44
18051696 CTTTTTTAAA
18051706 AATTTTAAATTATTTAAATAAGTTTTATTAATTTTATATTTTTAT
1 AATTTTAAATTATTT-AATAAGTTTTATTAATTTTATATTTTTAT
*
18051751 AATTTACTAGAATT-TTT-AT-ATTTTTA-TAATATTTATATTTTTTTAT
1 AATTT--TA-AATTATTTAATAAGTTTTATTAAT-TTTATA--TTTTTAT
* *
18051797 ATTTTTTAAAATA-TTAATAAGTTTATATTAATTTTAATATTTTTA
1 A-ATTTTAAATTATTTAATAAGTTT-TATTAATTTT-ATATTTTTA
18051842 ATATTAAATA
Statistics
Matches: 74, Mismatches: 4, Indels: 25
0.72 0.04 0.24
Matches are distributed among these distances:
43 4 0.05
44 17 0.23
45 11 0.15
46 18 0.24
47 13 0.18
48 11 0.15
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (44 bp):
AATTTTAAATTATTTAATAAGTTTTATTAATTTTATATTTTTAT
Found at i:18051784 original size:19 final size:20
Alignment explanation
Indices: 18051741--18051797 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
18051731 TATTAATTTT
*
18051741 ATATTTTTATA-ATTTACTAG
1 ATATTTTTATATTTTTA-TAG
18051761 A-ATTTTTATATTTTTATA-
1 ATATTTTTATATTTTTATAG
* *
18051779 ATATTTATATTTTTTTATA
1 ATATTTTTATATTTTTATA
18051798 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.03
19 26 0.81
20 5 0.16
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
ATATTTTTATATTTTTATAG
Found at i:18051793 original size:27 final size:29
Alignment explanation
Indices: 18051737--18051811 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 29
18051727 GTTTTATTAA
18051737 TTTTATATTTTTAT-A-ATTTACTAGAAT
1 TTTTATATTTTTATAATATTTACTAGAAT
**
18051764 TTTTATATTTTTATAATATTTA-TA-TTT
1 TTTTATATTTTTATAATATTTACTAGAAT
*
18051791 TTTTATATTTTTTAAAATATT
1 TTTTATA-TTTTTATAATATT
18051812 AATAAGTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 22 0.52
28 15 0.36
29 5 0.12
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (29 bp):
TTTTATATTTTTATAATATTTACTAGAAT
Found at i:18051804 original size:19 final size:17
Alignment explanation
Indices: 18051723--18051802 Score: 63
Period size: 17 Copynumber: 4.5 Consensus size: 17
18051713 AATTATTTAA
* *
18051723 ATAAGTTTTATTAATTTT
1 ATAATTTTTA-TATTTTT
*
18051741 AT-ATTTTTATAATTTACT
1 ATAATTTTTAT-ATTT-TT
*
18051759 AGAATTTTTATATTTTT
1 ATAATTTTTATATTTTT
*
18051776 ATAATATTTATATTTTT
1 ATAATTTTTATATTTTT
*
18051793 TTATATTTTT
1 ATA-ATTTTT
18051803 TAAAATATTA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
16 1 0.02
17 27 0.55
18 13 0.27
19 8 0.16
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (17 bp):
ATAATTTTTATATTTTT
Found at i:18051874 original size:28 final size:29
Alignment explanation
Indices: 18051831--18051889 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
18051821 ATATTAATTT
*
18051831 TAATATTTTTAATA-TTAAATATTTTTTA
1 TAATATTTTTAATATTTAAATATCTTTTA
**
18051859 TAATATTTTTCTTATTTTAAATATCTTTTA
1 TAATATTTTTAATA-TTTAAATATCTTTTA
18051889 T
1 T
18051890 GATTTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (29 bp):
TAATATTTTTAATATTTAAATATCTTTTA
Found at i:18051894 original size:19 final size:19
Alignment explanation
Indices: 18051854--18051910 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
18051844 ATTAAATATT
* *
18051854 TTTTATAATATTTTTCTTA
1 TTTTATAATATTTTTATGA
18051873 TTTTA-AATATCTTTTATGA
1 TTTTATAATAT-TTTTATGA
18051892 TTTT-TAATCACTTTTTATG
1 TTTTATAAT-A-TTTTTATG
18051911 GAGAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 5 0.16
19 18 0.56
20 8 0.25
21 1 0.03
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTATAATATTTTTATGA
Found at i:18052535 original size:21 final size:20
Alignment explanation
Indices: 18052507--18052545 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
18052497 TATTAGTTTG
18052507 AAAATAA-TATATAATGATTT
1 AAAATAATTA-ATAATGATTT
18052527 AAAACTAATTAATAATGAT
1 AAAA-TAATTAATAATGAT
18052546 ACATAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 11 0.65
22 2 0.12
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAATAATTAATAATGATTT
Found at i:18053108 original size:26 final size:26
Alignment explanation
Indices: 18053078--18053148 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
18053068 ATACATATTT
18053078 AATTATTTATATTTAGTCA-TATAATA
1 AATTATTTATATTTA-TCATTATAATA
* *
18053104 AATTATTAATATAATTTATTATTTTAATA
1 AATTATT--TAT-ATTTATCATTATAATA
18053133 AATTATTTAATATTTA
1 AATTATTT-ATATTTA
18053149 AATTTTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 7 0.18
29 18 0.47
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (26 bp):
AATTATTTATATTTATCATTATAATA
Found at i:18053117 original size:16 final size:16
Alignment explanation
Indices: 18053096--18053145 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
18053086 ATATTTAGTC
18053096 ATATAATAAATTATTA
1 ATATAATAAATTATTA
18053112 ATATAAT---TTATTA
1 ATATAATAAATTATTA
* *
18053125 TTTTAATAAATTATTTA
1 ATATAATAAATTA-TTA
18053142 ATAT
1 ATAT
18053146 TTAAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 10 0.38
17 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:18053121 original size:29 final size:30
Alignment explanation
Indices: 18053088--18053145 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
18053078 AATTATTTAT
18053088 ATTTAGTCA-TATAATAAATTA-TTAATATA
1 ATTTA-TCATTATAATAAATTATTTAATATA
* *
18053117 ATTTATTATTTTAATAAATTATTTAATAT
1 ATTTATCATTATAATAAATTATTTAATAT
18053146 TTAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 16 0.64
30 7 0.28
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
ATTTATCATTATAATAAATTATTTAATATA
Found at i:18060065 original size:16 final size:16
Alignment explanation
Indices: 18060021--18060065 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
18060011 ATATTCGTTG
*
18060021 AATCCCTAAAATCTTGA
1 AATCCCT-AAATATTGA
*
18060038 AATCCCTGAATATTGA
1 AATCCCTAAATATTGA
*
18060054 AATCTCTAAATA
1 AATCCCTAAATA
18060066 GTTAGCATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (16 bp):
AATCCCTAAATATTGA
Found at i:18063438 original size:33 final size:32
Alignment explanation
Indices: 18063401--18063537 Score: 116
Period size: 33 Copynumber: 4.2 Consensus size: 32
18063391 CTGTTAAGGG
18063401 GGGTGATGTTGAAGGGGTAGAAGTTGATGAGGA
1 GGGTGATGTTGAAGGGGTAGAAGTTGATG-GGA
* *
18063434 GGGTGATGATGAAGGGGTAGAA-TCTAATGGTGA
1 GGGTGATGTTGAAGGGGTAGAAGT-TGATGG-GA
* ** * *
18063467 AGGTGAT-TTGGAAATGGTAGAATTTGTTGGGAA
1 GGGTGATGTT-GAAGGGGTAGAAGTTGATGGG-A
* * *
18063500 GGGTGATGTAGAAGGGGTACAAGCTGATGGGGA
1 GGGTGATGTTGAAGGGGTAGAAGTTGAT-GGGA
18063533 GGGTG
1 GGGTG
18063538 TGTCTGCTAC
Statistics
Matches: 81, Mismatches: 16, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
32 4 0.05
33 72 0.89
34 5 0.06
ACGTcount: A:0.28, C:0.02, G:0.45, T:0.25
Consensus pattern (32 bp):
GGGTGATGTTGAAGGGGTAGAAGTTGATGGGA
Found at i:18081324 original size:24 final size:24
Alignment explanation
Indices: 18081296--18081344 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
18081286 AAAGCTTTTG
*
18081296 ACTTATTTATTTGTATTAAAAATA
1 ACTTATTTATTAGTATTAAAAATA
18081320 ACTTATTTATTAGTATTAAAAATA
1 ACTTATTTATTAGTATTAAAAATA
18081344 A
1 A
18081345 TTTCTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (24 bp):
ACTTATTTATTAGTATTAAAAATA
Found at i:18084234 original size:21 final size:21
Alignment explanation
Indices: 18084208--18084251 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
18084198 TCTAATAGCA
*
18084208 AATTTTATGTTCCATAAGCTG
1 AATTTTATGTTCCACAAGCTG
*
18084229 AATTTTATGTTCTACAAGCTG
1 AATTTTATGTTCCACAAGCTG
18084250 AA
1 AA
18084252 GTTGATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (21 bp):
AATTTTATGTTCCACAAGCTG
Found at i:18084595 original size:12 final size:12
Alignment explanation
Indices: 18084573--18084602 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
18084563 GAATGAAAAG
18084573 ATATGAAATATAT
1 ATAT-AAATATAT
18084586 ATATAAATATAT
1 ATATAAATATAT
18084598 ATATA
1 ATATA
18084603 TAAGAGGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (12 bp):
ATATAAATATAT
Found at i:18084923 original size:41 final size:41
Alignment explanation
Indices: 18084878--18084980 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
18084868 GGCTATGTGC
* *
18084878 CTAGCAGGCTTAATGCTGGTGAAATAATTCAGACTTTAAGT
1 CTAGCAGGCTTAATGCTGGTGAAACAATTCAGACTATAAGT
* * * *
18084919 CTAGCAGGCTTAATGCCGGTGAAACATTTCGGACTATAGGT
1 CTAGCAGGCTTAATGCTGGTGAAACAATTCAGACTATAAGT
* *
18084960 CTAGCAGGCTAAAAGCTGGTG
1 CTAGCAGGCTTAATGCTGGTG
18084981 TATCGAATCA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCTGGTGAAACAATTCAGACTATAAGT
Found at i:18085257 original size:35 final size:36
Alignment explanation
Indices: 18085202--18085271 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
18085192 ATAAAGGCAT
*
18085202 ATGTACATTAGGTATATGCGGTTATTGAATTTATAA
1 ATGTACATTAGGTATATGCGGTTATTAAATTTATAA
*
18085238 ATGTACA-T-GGTGATATGCGGTTGTTAAATTTATA
1 ATGTACATTAGGT-ATATGCGGTTATTAAATTTATA
18085272 TATATGGAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 3 0.10
35 21 0.68
36 7 0.23
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.41
Consensus pattern (36 bp):
ATGTACATTAGGTATATGCGGTTATTAAATTTATAA
Found at i:18086121 original size:11 final size:11
Alignment explanation
Indices: 18086092--18086158 Score: 52
Period size: 12 Copynumber: 6.3 Consensus size: 11
18086082 AAATTAAAAT
*
18086092 AAAA-ATTTAA
1 AAAATATTTTA
18086102 AAAAGTATTTTA
1 AAAA-TATTTTA
18086114 AAAATATTTT-
1 AAAATATTTTA
**
18086124 -AAA-ATTAAA
1 AAAATATTTTA
18086133 AAAAGTATTTTA
1 AAAA-TATTTTA
*
18086145 AAAAAATTTTA
1 AAAATATTTTA
18086156 AAA
1 AAA
18086159 TTAAAAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
8 3 0.07
9 3 0.07
10 7 0.16
11 15 0.33
12 17 0.38
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAATATTTTA
Found at i:18086135 original size:31 final size:31
Alignment explanation
Indices: 18086093--18086167 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
18086083 AATTAAAATA
* *
18086093 AAAATTTAAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAAAAGTATTTTAAAAAAATTTT
18086124 AAAATTAAAAAAAGTATTTTAAAAAAATTTT
1 AAAATTAAAAAAAGTATTTTAAAAAAATTTT
18086155 AAAATTAAAAAAA
1 AAAATTAAAAAAA
18086168 TTAAAAAAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (31 bp):
AAAATTAAAAAAAGTATTTTAAAAAAATTTT
Found at i:18086162 original size:17 final size:17
Alignment explanation
Indices: 18086111--18086169 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
18086101 AAAAAGTATT
*
18086111 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTTAAAA
*
18086128 TTAAAAAAAGTATT----
1 TTAAAAAAA-TTTTAAAA
18086142 TTAAAAAAATTTTAAAA
1 TTAAAAAAATTTTAAAA
18086159 TTAAAAAAATT
1 TTAAAAAAATT
18086170 AAAAAAAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
13 3 0.09
14 9 0.26
17 19 0.56
18 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
TTAAAAAAATTTTAAAA
Found at i:18086168 original size:40 final size:40
Alignment explanation
Indices: 18086124--18086213 Score: 155
Period size: 40 Copynumber: 2.3 Consensus size: 40
18086114 AAAATATTTT
18086124 AAAATTAAAAAAAGTATTTTAAAAAAATTTTAAAATTAAA
1 AAAATTAAAAAAAGTATTTTAAAAAAATTTTAAAATTAAA
**
18086164 AAAATTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAAA
1 AAAATTAAAAAAAGTATTTTAAAAAAATTTTAAAATTAAA
18086204 AAAA-TAAAAA
1 AAAATTAAAAA
18086214 TATTTATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 6 0.12
40 42 0.88
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (40 bp):
AAAATTAAAAAAAGTATTTTAAAAAAATTTTAAAATTAAA
Found at i:18086175 original size:17 final size:17
Alignment explanation
Indices: 18086142--18086175 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18086132 AAAAAGTATT
**
18086142 TTAAAAAAATTTTAAAA
1 TTAAAAAAATTAAAAAA
18086159 TTAAAAAAATTAAAAAA
1 TTAAAAAAATTAAAAAA
18086176 AGTATTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAAAAAAATTAAAAAA
Found at i:18086187 original size:11 final size:11
Alignment explanation
Indices: 18086173--18086198 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
18086163 AAAAATTAAA
18086173 AAAAGTATTTT
1 AAAAGTATTTT
18086184 AAAAGTATTTT
1 AAAAGTATTTT
18086195 AAAA
1 AAAA
18086199 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:18087396 original size:12 final size:12
Alignment explanation
Indices: 18087347--18087389 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
18087337 TCATTTTATC
18087347 ATCAAGTC-TTGA
1 ATCAAGTCATT-A
* *
18087359 ACCAAGTCATGA
1 ATCAAGTCATTA
18087371 ATCAAGTCATTA
1 ATCAAGTCATTA
18087383 ATCAAGT
1 ATCAAGT
18087390 TTTTAATTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 25 0.96
13 1 0.04
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (12 bp):
ATCAAGTCATTA
Found at i:18094386 original size:61 final size:62
Alignment explanation
Indices: 18094314--18094434 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 62
18094304 CCTTTTCACA
* *
18094314 ATGTTAATTATAGGATTAATATTTTTAAATTCGAAAAAT-AAAAAGATTTAATTTTTAAAAG
1 ATGTTAATTATAGGATTAATATTTTTAAATTCAAAAAATAAAAAAGACTTAATTTTTAAAAG
*
18094375 ATGTTAATTATAGGATTAATGTTTTTAAATTCAAAAAATAAAAAAAGACTTAATTTTTAA
1 ATGTTAATTATAGGATTAATATTTTTAAATTCAAAAAAT-AAAAAAGACTTAATTTTTAA
18094435 CTTTTAAAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 37 0.67
63 18 0.33
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.40
Consensus pattern (62 bp):
ATGTTAATTATAGGATTAATATTTTTAAATTCAAAAAATAAAAAAGACTTAATTTTTAAAAG
Found at i:18097932 original size:7 final size:7
Alignment explanation
Indices: 18097922--18097947 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
18097912 CCGGGAAATA
18097922 GGAAGTT
1 GGAAGTT
18097929 GGAAGTT
1 GGAAGTT
18097936 GGAAGTT
1 GGAAGTT
18097943 GGAAG
1 GGAAG
18097948 AAACCGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (7 bp):
GGAAGTT
Found at i:18102008 original size:17 final size:17
Alignment explanation
Indices: 18101941--18102008 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
18101931 TATGTGAATG
*
18101941 TAAAATTATTAATT-GA
1 TAAAATTATTAATTATA
* *
18101957 TAAATTGTATTAATGATTA
1 TAAAAT-TATTAATTA-TA
*
18101976 GTAAAATTATCAAATTATA
1 -TAAAATTAT-TAATTATA
18101995 TAAAATTATTAATT
1 TAAAATTATTAATT
18102009 GTTAGTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
16 5 0.12
17 11 0.28
18 9 0.22
19 6 0.15
20 9 0.22
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (17 bp):
TAAAATTATTAATTATA
Found at i:18102300 original size:45 final size:43
Alignment explanation
Indices: 18102096--18103438 Score: 760
Period size: 45 Copynumber: 30.1 Consensus size: 43
18102086 AATTAAATTA
* * *
18102096 GGTTAGAGTTTTTAAGTTAA--GGGTTAGAGTTTTTAAGTTAAG
1 GGTTAG-GGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* *
18102138 GGTTTAGTGTTTTTAAGTTAA--GGGTTAGGG-TTTTAAGTTAAG
1 GG-TTAG-GGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * * *
18102180 GGTTAGAGTTTTTAAGTTAA--GGGTTTAGTGTTTTTAAGTTAAT
1 GGTTAG-GGTTTTAAGTTAATTAGG-TTAGGGTTTTTAAGTTAAG
* *
18102223 GGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTAAAGTTAAAG
1 GGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT-AAG
*
18102266 AGGTTAGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAG
1 -GGTTAGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * * *
18102310 GGTTTAAGATTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAG
1 GG-TTAGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18102354 GGTTTAGTGTTTTTAA-TTAAATTAGGCTAGGGTTTTTAAGTTTAG
1 GG-TTAG-GGTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18102399 GGTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAG
1 GG-TTAG-GGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18102444 GGTATAGGGTTTTTAA-TTAAATTAGGTCAGGGTTTTTAATTTAATAA
1 GGT-TAGGG-TTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTT-A-AG
* *
18102491 GGTTAGGGCTTTTAAG-T--TTAGGGTTTAAGGTTTTTAA-TTAAATTA
1 GGTTAGGG-TTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTT-AA--G
*** * *
18102536 GGTTAGGGTTTTTAAGTTAAGGGGGTTATGGTTTTTAAGTTTAG
1 GGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18102580 GGTTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTATG
1 GG-TT-AGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-TTAAG
* ** *
18102626 GTTTAAGATTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTTAG
1 GGTT-AGGGTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTAAG
* *
18102670 GGTTTAGGGCTTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAAATTA
1 GG-TTAGGG---TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT-AA--G
18102719 GGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGG
1 GGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-G
* * *
18102764 GAGTTAGGGTTTTTAAG-T--TTAGGGTTTATGGTTTTTAATTTAATTA
1 G-GTTAGGG-TTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTAA--G
* * * *
18102810 GGTTAGGTTTTTTAAG-T--TTAGGGTTTAAGGTTTTTAATTTAATTA
1 GGTTAGG-GTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTAA--G
**
18102855 GGTTAGGGTTTTTAAGTTAATTAGGTTAGTTTTTTTAAGTTAAGG
1 GGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-G
* * * *
18102900 GGTTATGGTTTTTAAG-T--TTAGGGTTTATGGTTTTTAATTTAATTA
1 GGTTA-GGGTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTAA--G
* *
18102945 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAG
1 GGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18102989 GGATTAGAGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAATTTAATTA
1 GG-TTAG-GGTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTAA--G
* *** *
18103036 GGTTACGGTTTTTAAGTTAAGGGGGTTAGGGTTTTTAAGTTTAG
1 GGTTA-GGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * * * *
18103080 GG-T----TTTTAATTTAATTAGGTTAGAGTTTTTGATTTAATTT
1 GGTTAGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA--G
* *
18103120 GGTTAGGGTTTTTAAG-T--TTAGGGTTTAAGGTTTTTAA-TTAAATTA
1 GGTTAGGG-TTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTT-AA--G
* *
18103165 GGTTAGGGGTTTTAAG-T--TTAGGGTTTAAGGTTTTTGATTAAATTAA-
1 GGTTA-GGGTTTTAAGTTAATTA-GG-TT-AGG-GTTT--TTAAGTTAAG
** *
18103211 -GTTAGGGTTTTTACTTTAATTAGGTTAGGGTTTTTAAGTTTAG
1 GGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18103254 GGTTTATGGTTTGTAA-TTAAATTAGGTTAGTGTTTTTAAGTTTAG
1 GG-TTAGGGTTT-TAAGTT-AATTAGGTTAGGGTTTTTAAGTTAAG
* * *
18103299 GGTTTAGGGTTTGTAATTTAATTAGATTAGGGTTTTTAAGTTTAG
1 GG-TTAGGGTTT-TAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
* *
18103344 GGTTTATGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAGG
1 GG-TTA-GGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-G
* * *
18103390 GGTTAGGATTTTTAAG-T--TTAGGGTTTAGGGTTTTTAATTTAAT
1 GGTTAGG-GTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTAAG
18103433 GGTTAG
1 GGTTAG
18103439 TAGAATTCTC
Statistics
Matches: 1082, Mismatches: 124, Indels: 189
0.78 0.09 0.14
Matches are distributed among these distances:
38 26 0.02
40 2 0.00
41 21 0.02
42 49 0.05
43 92 0.09
44 137 0.13
45 504 0.47
46 173 0.16
47 51 0.05
48 17 0.02
49 8 0.01
50 2 0.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (43 bp):
GGTTAGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAG
Found at i:18102434 original size:68 final size:65
Alignment explanation
Indices: 18102065--18103432 Score: 716
Period size: 68 Copynumber: 20.5 Consensus size: 65
18102055 AGTAAAATTA
* * * * * *
18102065 TTAA-TTTAGTTTAGAGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTAA--GGGTTAGAGTT
1 TTAAGTTTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAATTAGGTTAGGGTT
18102127 T
65 T
* * * * * *
18102128 TTAAGTTAAGGGTTTAGTGTTTTTAAGTTAA--GGGTTAGGG-TTTTAAGTTAA--GGGTTAGAG
1 TTAAGTTTA-GG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAATTAGGTTAGGG
18102188 TTT
63 TTT
* * * *
18102191 TTAAGTTAAGGGTTTAGTGTTTTTAAGTTAA-T-GGTTAGGGTTTTTAAGTTAA--GGGTTAGGG
1 TTAAGTTTA-GG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAATTAGGTTAGGG
18102252 TTT
63 TTT
* * * *
18102255 TAAAGTTAAAGAGGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGT--TTAGGGTTTA-
1 TTAAGTT---TAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAG
* *
18102316 AGATT
61 GGTTT
* * * *
18102321 TTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A--GGGTTTAGTGTTTTTAATTAAATTAGGCTA
1 TTAA-GT--TTAGGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAATT-AATTAGGTTA
18102383 GGGTTT
60 GGGTTT
* *
18102389 TTAAGTTTAGGGTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGT--TTAGGGTATAGG
1 TTAAGTTTA-GG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GGT-TAGG
18102452 GTTT
62 GTTT
* * * * * *
18102456 TTAATTAAATTAGGTCAGGGTTTTTAATTTAATAAGGTTAGGGCTTTTAAGT--TTAGGGTTTAA
1 TTAAGT---TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAG
18102519 GGTTT
61 GGTTT
* * *** * * *
18102524 TTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGGGGGTTATGGTTTTTAAGT--TTAGGGTTTAA
1 TTAAGT---TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAG
18102587 GGTTT
61 GGTTT
* * *
18102592 TTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A-T-GGTTTAAGATTTTTAATTAAATTAGGTTA
1 TTAA-GT--TTAGGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAATT-AATTAGGTTA
18102654 GGGTTT
60 GGGTTT
18102660 TTAAGTTTAGGGTTTAGGGCTTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
1 TTAAGTTTA-GG-TTAGGG--TTTTTAATTTAATTAGGTTAGGGTTTTTAATT-AATTAGGTTAG
18102725 GGTTT
61 GGTTT
* ** *
18102730 TTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGAGTTAGGGTTTTTAAGT--TTAGGGTTTA
1 TTAAG-T--TTAGGTTAGGGTTTTTAATTTAATTAG-GTTAGGGTTTTTAATTAATTA-GG-TTA
*
18102792 TGGTTT
60 GGGTTT
* * * *
18102798 TTAATTTAATTAGGTTAGGTTTTTTAAGTTT-A--GGGTTTAAGGTTTTTAATTTAATTAGGTTA
1 TTAA-GT--TTAGGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAA-TTAATTAGGTTA
18102860 GGGTTT
60 GGGTTT
** * ** * * *
18102866 TTAAGTTAATTAGGTTAGTTTTTTTAAGTTAA-GGGGTTATGGTTTTTAAGT--TTAGGGTTTAT
1 TTAAG-T--TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAG
18102928 GGTTT
61 GGTTT
* *
18102933 TTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGT--TTAGGGATTAG
1 TTAA-GT--TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAG
*
18102996 AGTTT
61 GGTTT
* * ***
18103001 TTAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTACGGTTTTTAAGTTAAGGGGGTTAGG
1 TTAAGT---TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAATTAGGTTAGG
18103066 GTTT
62 GTTT
* * *
18103070 TTAAG--T---TTAGGGTTTTTAATTTAATTAGGTTAGAGTTTTTGATTTAATTTGGTTAGGGTT
1 TTAAGTTTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTT-AATTAATTAGGTTAGGGTT
18103130 T
65 T
* * * * *
18103131 TTAAGTTTAGGGTTTAAGGTTTTTAATTAAATTAGGTTAGGGGTTTTAAGT--TTAGGGTTTAAG
1 TTAAGTTTA-GG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAGG
18103194 GTTT
62 GTTT
** * * * *
18103198 TTGATTAAATTAAGTTAGGGTTTTTACTTTAATTAGGTTAGGGTTTTTAAGT--TTAGGGTTTAT
1 TT-A--AGTTTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTA-GG-TTAG
18103261 GGTTT
61 GGTTT
* * * * * *
18103266 GTAATTAAATTAGGTTAGTGTTTTTAAGTTT-A--GGGTTTAGGGTTTGTAATTTAATTAGATTA
1 TTAAGT---TTAGGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAA-TTAATTAGGTTA
18103328 GGGTTT
60 GGGTTT
* ** *
18103334 TTAAGTTTAGGGTTTATGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGGTTAGGA
1 TTAAGTTTA-GG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAATTAGGTTAGGG
18103398 TTT
63 TTT
18103401 TTAAGTTTAGGGTTTAGGGTTTTTAATTTAAT
1 TTAAGTTTA-GG-TTAGGGTTTTTAATTTAAT
18103433 GGTTAGTAGA
Statistics
Matches: 1076, Mismatches: 132, Indels: 190
0.77 0.09 0.14
Matches are distributed among these distances:
61 52 0.05
62 1 0.00
63 67 0.06
64 50 0.05
65 28 0.03
66 88 0.08
67 193 0.18
68 453 0.42
69 76 0.07
70 54 0.05
71 9 0.01
72 2 0.00
73 3 0.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (65 bp):
TTAAGTTTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAATTAGGTTAGGGTTT
Found at i:18102498 original size:113 final size:112
Alignment explanation
Indices: 18102073--18103432 Score: 961
Period size: 113 Copynumber: 12.2 Consensus size: 112
18102063 TATTAATTTA
* * * *
18102073 GTTTAGAGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTAAGGGTTAGAGTTTTTAAGTTAA-
1 GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGTTAGGGTTTTTAA-TTAAT
* * * * *
18102137 -GGGTTTAGTGTTTTTAAGTTAA--GGGTTAGGG-TTTTAAGTTAAGG
65 TAGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
* * * * *
18102181 G-TTAGAGTTTTTAAGTTAA--GGGTTTAGTGTTTTTAAGTTAATGGTTAGGGTTTTTAAGTT-A
1 GTTTAGAGTTTTTAATTTAATTAGG-TTAGGGTTTTTAAGTTTAGGGTTAGGGTTTTTAA-TTAA
* * * **
18102242 --AGGGTTAGGGTTTTAAAGTTAAAGAGGTTAGGG-TTTTAAGTTAATTA-G
64 TTAGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAG-T--TTAGG
* * * * * *
18102290 G-TTAGGGTTTTTAAGTTT-A--GGGTTTA-AGATTTTAA-TTTAATTAGGTTAGGGTTTTTAAG
1 GTTTAGAGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTTT-A--GGGTTAGGGTTTTTAAT
* * *
18102349 T--TTAGGGTTTAGTGTTTTTAATTAAATTAGGCTAGGGTTTTTAAGTTTAGG
61 TAATTA-GGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
18102400 GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGTATAGGGTTTTTAATTAAA
1 GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGT-TAGGGTTTTTAATT-AA
* * *
18102465 TTAGG-TCAGGGTTTTTAATTTAATAAGGTTAGGGCTTTTAAGTTTAGG
64 TTAGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
* * * *
18102513 GTTTA-AGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGGGGGTTATGGTTTTTAAGT-
1 GTTTAGA-GTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTA--GGGTTAGGGTTTTTAATTA
* *
18102576 -TTAGGGTTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTATG
63 ATTA-GGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
*
18102626 GTTTA-AGATTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTAGGGTTTAGGGCTTTTTTAATT
1 GTTTAGAG-TTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-TTAGGG--TTTTTAA-T
*
18102690 TAATTAGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAATTA-G
61 TAATTAGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAG-T--TTAGG
* * ** *
18102743 G-TTAGGGTTTTTAAGTTAA-GGGAGTTAGGGTTTTTAAGTTTAGGGTTTATGGTTTTTAATTTA
1 GTTTAGAGTTTTTAATTTAATTAG-GTTAGGGTTTTTAAGTTTAGGG-TTAGGGTTTTTAA-TTA
* * * *
18102806 ATTAGG-TTAGGTTTTTTAAGTTT-A--GGGTTTAAGGTTTTTAA-TTTAATTAG
63 ATTAGGTTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTTT-A--GG
* * ** * * *
18102856 G-TTAGGGTTTTTAAGTTAATTAGGTTAGTTTTTTTAAGTTAAGGGGTTATGGTTTTTAAGT--T
1 GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTA-GGGTTAGGGTTTTTAATTAAT
* *
18102918 TAGGGTTTATGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTTAATTAG
65 TA-GGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A--GG
* * * *
18102969 G-TTAGGGTTTTTAAGTTT-A--GGGATTAGAGTTTTTAATTAAATTA-GGTTAGGGTTTTTAAT
1 GTTTAGAGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGT---TTAGGGTTAGGGTTTTTAA-
* * ***
18103029 TTAATTAGG-TTACGGTTTTTAAGTTAAGGGGGTTAGGGTTTTTAAGTTTA--
60 TTAATTAGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
* * * *
18103079 G----G-GTTTTTAATTTAATTAGGTTAGAGTTTTTGA-TTTAATTTGGTTAGGGTTTTTAAGT-
1 GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A--GGGTTAGGGTTTTTAATTA
* * *
18103137 -TTAGGGTTTAAGGTTTTTAATTAAATTAGGTTAGGGGTTTTAAGTTTAGG
63 ATTA-GGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
* * * * * *
18103187 GTTTA-AGGTTTTTGATTAAATTAAGTTAGGGTTTTT-ACTTTAATTAGGTTAGGGTTTTTAAGT
1 GTTTAGA-GTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A--GGGTTAGGGTTTTTAATT
* * * *
18103250 --TTAGGGTTTATGGTTTGTAATTAAATTAGGTTAGTGTTTTTAAGTTTAGG
62 AATTA-GGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
* * * *
18103300 GTTTAGGGTTTGTAATTTAATTAGATTAGGGTTTTTAAGTTTAGGGTTTATGGTTTTTAATTTAA
1 GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-TTAGGGTTTTTAA-TTAA
* ** *
18103365 TTAGG-TTAGGGTTTTTAAGTTAA-GGGGTTAGGATTTTTAAGTTTAGG
64 TTAGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
*
18103412 GTTTAGGGTTTTTAATTTAAT
1 GTTTAGAGTTTTTAATTTAAT
18103433 GGTTAGTAGA
Statistics
Matches: 1040, Mismatches: 124, Indels: 172
0.78 0.09 0.13
Matches are distributed among these distances:
103 2 0.00
104 4 0.00
105 26 0.03
106 79 0.08
107 61 0.06
108 13 0.01
109 28 0.03
110 30 0.03
111 57 0.05
112 112 0.11
113 415 0.40
114 101 0.10
115 56 0.05
116 47 0.05
117 6 0.01
118 3 0.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (112 bp):
GTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGTTAGGGTTTTTAATTAATT
AGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
Found at i:18103062 original size:23 final size:22
Alignment explanation
Indices: 18102096--18103438 Score: 839
Period size: 23 Copynumber: 60.3 Consensus size: 22
18102086 AATTAAATTA
*
18102096 GGTTAGAGTTTTTAAGTTAA-G
1 GGTTAGGGTTTTTAAGTTAATG
*
18102117 GGTTAGAGTTTTTAAGTTAA-G
1 GGTTAGGGTTTTTAAGTTAATG
*
18102138 GGTTTAGTGTTTTTAAGTTAA-G
1 GG-TTAGGGTTTTTAAGTTAATG
18102160 GGTTAGGG-TTTTAAGTTAA-G
1 GGTTAGGGTTTTTAAGTTAATG
*
18102180 GGTTAGAGTTTTTAAGTTAA-G
1 GGTTAGGGTTTTTAAGTTAATG
*
18102201 GGTTTAGTGTTTTTAAGTTAAT-
1 GG-TTAGGGTTTTTAAGTTAATG
18102223 GGTTAGGGTTTTTAAGTTAA-G
1 GGTTAGGGTTTTTAAGTTAATG
* *
18102244 GGTTAGGGTTTTAAAGTTAAAG
1 GGTTAGGGTTTTTAAGTTAATG
*
18102266 AGGTTAGGG-TTTTAAGTTAATTA
1 -GGTTAGGGTTTTTAAGTTAA-TG
*
18102289 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * * *
18102310 GGTTTA-AGATTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
*
18102333 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* *
18102354 GGTTTAGTGTTTTTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AA-TG
* *
18102378 GGCTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18102399 GGTTTAGAGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
*
18102423 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
*
18102444 GGTATAGGGTTTTTAA-TTAAATTA
1 GGT-TAGGGTTTTTAAGTT-AA-TG
* * *
18102468 GGTCAGGGTTTTTAATTTAATAA
1 GGTTAGGGTTTTTAAGTTAAT-G
* *
18102491 GGTTAGGGCTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* *
18102512 GGTTTAAGGTTTTTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AA-TG
*
18102536 GGTTAGGGTTTTTAAGTTAAGGG
1 GGTTAGGGTTTTTAAGTTAA-TG
* *
18102559 GGTTATGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18102580 GGTTTAAGGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
*
18102604 GGTTAGGGTTTTTAAGTTTATG
1 GGTTAGGGTTTTTAAGTTAATG
* * * *
18102626 GTTTAAGATTTTTAA-TTAAATTA
1 GGTTAGGGTTTTTAAGTT-AA-TG
*
18102649 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* *
18102670 GGTTTAGGGCTTTTTTAATTTAATTA
1 GG-TTAGGG--TTTTTAAGTTAA-TG
*
18102696 GGTTAGGGTTTTTAA-TTAAATTA
1 GGTTAGGGTTTTTAAGTT-AA-TG
*
18102719 GGTTAGGGTTTTTAAGTTAATTA
1 GGTTAGGGTTTTTAAGTTAA-TG
*
18102742 GGTTAGGGTTTTTAAGTTAAGG
1 GGTTAGGGTTTTTAAGTTAATG
*
18102764 GAGTTAGGGTTTTTAAGTTTA-G
1 G-GTTAGGGTTTTTAAGTTAATG
* * *
18102786 GGTTTATGGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
* *
18102810 GGTTAGGTTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18102831 GGTTTAAGGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
*
18102855 GGTTAGGGTTTTTAAGTTAATTA
1 GGTTAGGGTTTTTAAGTTAA-TG
** *
18102878 GGTTAGTTTTTTTAAGTTAAGG
1 GGTTAGGGTTTTTAAGTTAATG
* *
18102900 GGTTATGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18102921 GGTTTATGGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
* *
18102945 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAA-TG
*
18102968 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* *
18102989 GGATTAGAGTTTTTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AA-TG
* *
18103013 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAA-TG
* *
18103036 GGTTACGGTTTTTAAGTTAAGGG
1 GGTTAGGGTTTTTAAGTTAA-TG
18103059 GGTTAGGGTTTTTAAG----T-
1 GGTTAGGGTTTTTAAGTTAATG
* *
18103076 --TTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAA-TG
* * * *
18103097 GGTTAGAGTTTTTGATTTAATTT
1 GGTTAGGGTTTTTAAGTTAA-TG
*
18103120 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* *
18103141 GGTTTAAGGTTTTTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AA-TG
* *
18103165 GGTTAGGGGTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18103186 GGTTTAAGGTTTTTGA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AA-TG
* ** *
18103210 AGTTAGGGTTTTTACTTTAATTA
1 GGTTAGGGTTTTTAAGTTAA-TG
*
18103233 GGTTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18103254 GGTTTATGGTTTGTAA-TTAAATTA
1 GG-TTAGGGTTTTTAAGTT-AA-TG
* *
18103278 GGTTAGTGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18103299 GGTTTAGGGTTTGTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
* *
18103323 GATTAGGGTTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
* * *
18103344 GGTTTATGGTTTTTAATTTAATTA
1 GG-TTAGGGTTTTTAAGTTAA-TG
*
18103368 GGTTAGGGTTTTTAAGTTAAGG
1 GGTTAGGGTTTTTAAGTTAATG
* *
18103390 GGTTAGGATTTTTAAGTTTA-G
1 GGTTAGGGTTTTTAAGTTAATG
*
18103411 GGTTTAGGGTTTTTAATTTAAT-
1 GG-TTAGGGTTTTTAAGTTAATG
18103433 GGTTAG
1 GGTTAG
18103439 TAGAATTCTC
Statistics
Matches: 1047, Mismatches: 184, Indels: 182
0.74 0.13 0.13
Matches are distributed among these distances:
15 13 0.01
20 20 0.02
21 144 0.14
22 331 0.32
23 476 0.45
24 55 0.05
25 6 0.01
26 2 0.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (22 bp):
GGTTAGGGTTTTTAAGTTAATG
Found at i:18103092 original size:14 final size:15
Alignment explanation
Indices: 18103061--18103092 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
18103051 GTTAAGGGGG
18103061 TTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
18103076 TTAGGGTTTTTAA-T
1 TTAGGGTTTTTAAGT
18103090 TTA
1 TTA
18103093 ATTAGGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (15 bp):
TTAGGGTTTTTAAGT
Found at i:18103499 original size:25 final size:25
Alignment explanation
Indices: 18103465--18103512 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
18103455 TATCAAAAAT
*
18103465 TTCTATTTTATTACATTAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
18103490 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTACATCAAATAA
18103513 TATCAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:18104862 original size:20 final size:20
Alignment explanation
Indices: 18104824--18104862 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
18104814 CTTTTATTTT
*
18104824 TAAAATCTACATAATAATTG
1 TAAAATCTACATAAAAATTG
18104844 TAAAATCTA-ATATAAAATT
1 TAAAATCTACATA-AAAATT
18104863 TACCTCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (20 bp):
TAAAATCTACATAAAAATTG
Found at i:18107164 original size:25 final size:26
Alignment explanation
Indices: 18107128--18107185 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
18107118 AATTAAATAA
18107128 ATTTTTAAAGA-TAAAA-A-AATTATT
1 ATTTTTAAAGATTAAAATATAATT-TT
*
18107152 ATTTTTAGGAGATTAAAATATAATTTT
1 ATTTTTA-AAGATTAAAATATAATTTT
18107179 ATTTTTA
1 ATTTTTA
18107186 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 7 0.24
25 3 0.10
26 5 0.17
27 10 0.34
28 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (26 bp):
ATTTTTAAAGATTAAAATATAATTTT
Found at i:18109291 original size:24 final size:25
Alignment explanation
Indices: 18109222--18109330 Score: 86
Period size: 24 Copynumber: 4.5 Consensus size: 25
18109212 TTCGGGCTGT
*
18109222 ATAA-CGGGAAGCTCAT-AAGAACC-
1 ATAATCGGGAAGCTC-TGAAGAGCCA
* *
18109245 ATAATCAGGAAGCTCATG-CGAGCCA
1 ATAATCGGGAAGCTC-TGAAGAGCCA
*
18109270 ATAA-CGGGTAGCTCTGAAGAGCCA
1 ATAATCGGGAAGCTCTGAAGAGCCA
* * *
18109294 TTAATCGGGAAGCTCTGGATAGCC-
1 ATAATCGGGAAGCTCTGAAGAGCCA
18109318 ATATATCGGGAAG
1 ATA-ATCGGGAAG
18109331 TTCAAGGGAG
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
23 6 0.09
24 34 0.49
25 29 0.42
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (25 bp):
ATAATCGGGAAGCTCTGAAGAGCCA
Found at i:18109292 original size:98 final size:102
Alignment explanation
Indices: 18109123--18109307 Score: 229
Period size: 98 Copynumber: 1.8 Consensus size: 102
18109113 AATTCATATT
* * * * *
18109123 CGGGAATGCTCATTAGAGCACATAATCGGGAAGCTCTCTTTCGAGCCATATAACAGGAAGCTCAT
1 CGGGAATGCTCATAAGAACACATAATCAGGAAGC-CTCATGCGAGCCATATAACAGGAAGCTCAT
*
18109188 GTGAGCCATGTAA-CGGGAAGCTTATTCGGGCTGTATAA
65 GAGAGCCAT-TAATCGGGAAGCTTATTCGGGCTGTATAA
* *
18109226 CGGGAA-GCTCATAAGAAC-CATAATCAGGAAG-CTCATGCGAGCCA-ATAACGGGTAGCTC-TG
1 CGGGAATGCTCATAAGAACACATAATCAGGAAGCCTCATGCGAGCCATATAACAGGAAGCTCATG
18109286 AAGAGCCATTAATCGGGAAGCT
66 -AGAGCCATTAATCGGGAAGCT
18109308 CTGGATAGCC
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
97 5 0.07
98 28 0.39
99 11 0.15
101 12 0.17
102 10 0.14
103 6 0.08
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (102 bp):
CGGGAATGCTCATAAGAACACATAATCAGGAAGCCTCATGCGAGCCATATAACAGGAAGCTCATG
AGAGCCATTAATCGGGAAGCTTATTCGGGCTGTATAA
Found at i:18109307 original size:25 final size:25
Alignment explanation
Indices: 18109222--18109356 Score: 97
Period size: 25 Copynumber: 5.6 Consensus size: 25
18109212 TTCGGGCTGT
*
18109222 ATAA-CGGGAAGCTCAT-AAGAACC
1 ATAATCGGGAAGCTCATGAAGAGCC
* *
18109245 ATAATCAGGAAGCTCATG-CGAGCC
1 ATAATCGGGAAGCTCATGAAGAGCC
*
18109269 AATAA-CGGGTAGCTC-TGAAGAGCC
1 -ATAATCGGGAAGCTCATGAAGAGCC
* *
18109293 ATTAATCGGGAAGCTC-TGGATAGCC
1 A-TAATCGGGAAGCTCATGAAGAGCC
* * *
18109318 ATATATCGGGAAGTTCAAG-GGAGCC
1 ATA-ATCGGGAAGCTCATGAAGAGCC
*
18109343 AT-ATTGGGAAGCTC
1 ATAATCGGGAAGCTC
18109357 CGGAGAGCTA
Statistics
Matches: 89, Mismatches: 15, Indels: 16
0.74 0.12 0.13
Matches are distributed among these distances:
23 17 0.19
24 33 0.37
25 38 0.43
26 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.19
Consensus pattern (25 bp):
ATAATCGGGAAGCTCATGAAGAGCC
Found at i:18111714 original size:58 final size:56
Alignment explanation
Indices: 18111644--18111760 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
18111634 TATTTTCGTT
18111644 CACTAGGAAAATCCTCGTCTCGAGAAAACAATATGTCATATCCAAAGCGTTAGGACAC
1 CACTAGGAAAATCCTCGTCTCGAGAAAAC-A-ATGTCATATCCAAAGCGTTAGGACAC
18111702 CACTAGGAAAATCCTCGTCTCGAGAAAACAATGTCATATCCAAAGCGTTAGGACAC
1 CACTAGGAAAATCCTCGTCTCGAGAAAACAATGTCATATCCAAAGCGTTAGGACAC
18111758 CAC
1 CAC
18111761 GTATCGAATT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
56 29 0.49
57 1 0.02
58 29 0.49
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.20
Consensus pattern (56 bp):
CACTAGGAAAATCCTCGTCTCGAGAAAACAATGTCATATCCAAAGCGTTAGGACAC
Found at i:18114061 original size:20 final size:19
Alignment explanation
Indices: 18114036--18114073 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
18114026 ATTTGTCTTG
18114036 AGAATAATAATAAAATATTT
1 AGAATAATAA-AAAATATTT
*
18114056 AGAATAATTAAAAATATT
1 AGAATAATAAAAAATATT
18114074 ATTTAATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
AGAATAATAAAAAATATTT
Found at i:18116460 original size:18 final size:18
Alignment explanation
Indices: 18116437--18116472 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
18116427 TTTTATTACT
*
18116437 AGTGGTTTATCCACAATG
1 AGTGGTTCATCCACAATG
18116455 AGTGGTTCATCCACAATG
1 AGTGGTTCATCCACAATG
18116473 TGGTGTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (18 bp):
AGTGGTTCATCCACAATG
Found at i:18118633 original size:34 final size:35
Alignment explanation
Indices: 18118578--18118657 Score: 144
Period size: 34 Copynumber: 2.3 Consensus size: 35
18118568 TTTAAATTTT
18118578 AAATATATTAATTTTTTTTTGTCTCTACCTATTAA
1 AAATATATTAATTTTTTTTTGTCTCTACCTATTAA
*
18118613 AAATATATTAA-TTTTTTTTGTCTCTATCTATTAA
1 AAATATATTAATTTTTTTTTGTCTCTACCTATTAA
18118647 AAATATATTAA
1 AAATATATTAA
18118658 ATATTTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 33 0.75
35 11 0.25
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.53
Consensus pattern (35 bp):
AAATATATTAATTTTTTTTTGTCTCTACCTATTAA
Found at i:18118746 original size:19 final size:18
Alignment explanation
Indices: 18118722--18118764 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
18118712 ATTTTAATAT
18118722 ATTTAAAG-ATATTTAAAA
1 ATTTAAAGTATA-TTAAAA
18118740 ATATT-AAGTATATTAAAA
1 AT-TTAAAGTATATTAAAA
18118758 ATTTAAA
1 ATTTAAA
18118765 ATTGTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.09
18 15 0.68
19 5 0.23
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (18 bp):
ATTTAAAGTATATTAAAA
Found at i:18118756 original size:89 final size:89
Alignment explanation
Indices: 18118641--18118816 Score: 246
Period size: 89 Copynumber: 2.0 Consensus size: 89
18118631 TGTCTCTATC
* * ** * *
18118641 TATTAAAAATATATTAAATATTTTAAAATTTTAAAATTGGTTATACTTAATTTTATTTTAATATG
1 TATTAAAAATATATTAAATATATTAAAAATTTAAAATTGGTTATACTTAACATT-TTTTAACATA
*
18118706 TTTGAAATTTTAATATATTTAAAGA
65 TTTAAAATTTTAATATATTTAAAGA
* * *
18118731 TATTTAAAA-ATATTAAGTATATTAAAAATTTAAAATTGTTTATACTTAACATTTTTTAACATAT
1 TATTAAAAATATATTAAATATATTAAAAATTTAAAATTGGTTATACTTAACATTTTTTAACATAT
18118795 TTAAAATTTTAATATATTTAAA
66 TTAAAATTTTAATATATTTAAA
18118817 TTTTTTTTAT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
88 30 0.39
89 38 0.50
90 8 0.11
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (89 bp):
TATTAAAAATATATTAAATATATTAAAAATTTAAAATTGGTTATACTTAACATTTTTTAACATAT
TTAAAATTTTAATATATTTAAAGA
Found at i:18118821 original size:17 final size:17
Alignment explanation
Indices: 18118783--18118821 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
18118773 TACTTAACAT
18118783 TTTTTAACATATTTAAA
1 TTTTTAACATATTTAAA
* *
18118800 ATTTTAATATATTTAAA
1 TTTTTAACATATTTAAA
18118817 TTTTT
1 TTTTT
18118822 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTTAACATATTTAAA
Found at i:18118968 original size:17 final size:17
Alignment explanation
Indices: 18118878--18118978 Score: 80
Period size: 17 Copynumber: 5.6 Consensus size: 17
18118868 TTACCCATTA
*
18118878 AAAAATATTAAATATATT
1 AAAAAT-TTTAATATATT
*
18118896 -AAAATTTCAATATATT
1 AAAAATTTTAATATATT
* *
18118912 TAAAATTGTAATATATTTT
1 AAAAATTTTAATATA--TT
*
18118931 AAAAAATATATTGATTATATT
1 -AAAAAT-T-TT-AATATATT
18118952 AAAAATTTTAATATATT
1 AAAAATTTTAATATATT
18118969 -AAAATTTTAA
1 AAAAATTTTAA
18118979 AATTGGTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
16 20 0.29
17 24 0.35
18 2 0.03
19 3 0.04
20 11 0.16
21 3 0.04
22 1 0.01
23 5 0.07
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (17 bp):
AAAAATTTTAATATATT
Found at i:18119017 original size:17 final size:17
Alignment explanation
Indices: 18118995--18119107 Score: 79
Period size: 17 Copynumber: 6.6 Consensus size: 17
18118985 TTATACTTAA
18118995 AATTTTTTAATATATTT
1 AATTTTTTAATATATTT
*
18119012 AATTTTTTAAATATATTA
1 AATTTTTT-AATATATTT
* * *
18119030 AATATATTAAAAT-TTT
1 AATTTTTTAATATATTT
** * *
18119046 AAAATTGGTT-ATA-CTTA
1 --AATTTTTTAATATATTT
18119063 ACATTTTTTAATATATTT
1 A-ATTTTTTAATATATTT
**
18119081 AAAATTTTAATATATTT
1 AATTTTTTAATATATTT
18119098 AATTTTTTAA
1 AATTTTTTAA
18119108 ATTTTTTTAA
Statistics
Matches: 71, Mismatches: 18, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
15 1 0.01
16 7 0.10
17 41 0.58
18 22 0.31
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
AATTTTTTAATATATTT
Found at i:18119044 original size:69 final size:68
Alignment explanation
Indices: 18118961--18119096 Score: 236
Period size: 69 Copynumber: 2.0 Consensus size: 68
18118951 TAAAAATTTT
**
18118961 AATATATTAAAATTTTAAAATTGGTTATACTTAAAATTTTTTAATATATTTAATTTTTTAAATAT
1 AATATATTAAAATTTTAAAATTGGTTATACTTAAAATTTTTTAATATATTTAAAATTTT-AATAT
18119026 ATTA
65 ATTA
*
18119030 AATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAAAATTTTAATATA
1 AATATATTAAAATTTTAAAATTGGTTATACTTAAAATTTTTTAATATATTTAAAATTTTAATATA
18119095 TT
66 TT
18119097 TAATTTTTTA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
68 8 0.12
69 56 0.88
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.51
Consensus pattern (68 bp):
AATATATTAAAATTTTAAAATTGGTTATACTTAAAATTTTTTAATATATTTAAAATTTTAATATA
TTA
Found at i:18119049 original size:8 final size:9
Alignment explanation
Indices: 18118994--18119134 Score: 54
Period size: 9 Copynumber: 16.2 Consensus size: 9
18118984 GTTATACTTA
18118994 AAAT-TTTT
1 AAATATTTT
*
18119002 TAATATATTT
1 AAATAT-TTT
*
18119012 -AATTTTTT
1 AAATATTTT
*
18119020 AAATATATT
1 AAATATTTT
*
18119029 AAATATATT
1 AAATATTTT
18119038 AAA-ATTTT
1 AAATATTTT
18119046 AAA-ATTGGTT
1 AAATATT--TT
*
18119056 --ATA-CTT
1 AAATATTTT
18119062 AACAT-TTTT
1 AA-ATATTTT
*
18119071 TAATATATTT
1 AAATAT-TTT
18119081 AAA-ATTTT
1 AAATATTTT
18119089 -AATATATTT
1 AAATAT-TTT
*
18119098 -AATTTTTT
1 AAATATTTT
*
18119106 AAATTTTTTT
1 AAA-TATTTT
18119116 AAA-ATTTT
1 AAATATTTT
*
18119124 AAATATGTT
1 AAATATTTT
18119133 AA
1 AA
18119135 GAATTTTTTC
Statistics
Matches: 104, Mismatches: 12, Indels: 33
0.70 0.08 0.22
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 34 0.33
9 47 0.45
10 19 0.18
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (9 bp):
AAATATTTT
Found at i:18119125 original size:43 final size:42
Alignment explanation
Indices: 18118999--18119126 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 42
18118989 ACTTAAAATT
* * *
18118999 TTTTAATATATTTAATTTTTTAAATATATTAAATATATTAAAA
1 TTTTAATATATTTAATTTTTTAAATTTTTTAAA-ATTTTAAAA
* ** *
18119042 TTTTAA-A-ATTGGTTA-TACTTAACATTTTTTAATATATTTAAAA
1 TTTTAATATATT--TAATTTTTTAA-ATTTTTTAAAAT-TTTAAAA
18119085 TTTTAATATATTTAATTTTTTAAATTTTTTTAAAATTTTAAA
1 TTTTAATATATTTAATTTTTTAAA-TTTTTTAAAATTTTAAA
18119127 TATGTTAAGA
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
41 3 0.05
42 8 0.12
43 36 0.55
44 16 0.24
45 3 0.05
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (42 bp):
TTTTAATATATTTAATTTTTTAAATTTTTTAAAATTTTAAAA
Found at i:18119209 original size:30 final size:28
Alignment explanation
Indices: 18119157--18119212 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
18119147 TACCTATTAA
18119157 AAATATATAATAAATATATTAAAATTTT
1 AAATATATAATAAATATATTAAAATTTT
* *
18119185 AAATATATTAAGTATATATTTTAAAATT
1 AAATATA-TAA-TAAATATATTAAAATT
18119213 AGTTATACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.29
29 3 0.12
30 14 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (28 bp):
AAATATATAATAAATATATTAAAATTTT
Found at i:18119580 original size:21 final size:21
Alignment explanation
Indices: 18119542--18119581 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18119532 ATAAAAAAAT
*
18119542 TTAAGTTTTTTATGTAATTAA
1 TTAAGTTTTTTAGGTAATTAA
18119563 TTAA-TTTTTTAGGTTAATT
1 TTAAGTTTTTTAGG-TAATT
18119582 TTATAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (21 bp):
TTAAGTTTTTTAGGTAATTAA
Found at i:18127079 original size:19 final size:19
Alignment explanation
Indices: 18127057--18127107 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 19
18127047 TAAATAATAC
18127057 AATTATCATAATATTTTTT
1 AATTATCATAATATTTTTT
18127076 AATTAT--T-ATATTTTTT
1 AATTATCATAATATTTTTT
* * *
18127092 AAATAACATATTATTT
1 AATTATCATAATATTT
18127108 AAATAGGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
16 13 0.50
17 1 0.04
18 1 0.04
19 11 0.42
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
AATTATCATAATATTTTTT
Found at i:18127102 original size:16 final size:16
Alignment explanation
Indices: 18127067--18127112 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
18127057 AATTATCATA
* **
18127067 ATATTTTTTAATTATT
1 ATATTTTTTAAATAAC
18127083 ATATTTTTTAAATAAC
1 ATATTTTTTAAATAAC
*
18127099 ATATTATTTAAATA
1 ATATTTTTTAAATA
18127113 GGTGGAACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
ATATTTTTTAAATAAC
Found at i:18135492 original size:21 final size:23
Alignment explanation
Indices: 18135448--18135493 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
18135438 TATACTCGTA
18135448 TTATTTTTATATGTATTTTCTAT
1 TTATTTTTATATGTATTTTCTAT
18135471 TTATTTTT-T-TG-ATTTATCTAT
1 TTATTTTTATATGTATTT-TCTAT
18135492 TT
1 TT
18135494 TTAATTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.18
21 9 0.41
22 1 0.05
23 8 0.36
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (23 bp):
TTATTTTTATATGTATTTTCTAT
Found at i:18144594 original size:11 final size:11
Alignment explanation
Indices: 18144578--18144616 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
18144568 CTTTTTAGAT
18144578 AATTATAAAAA
1 AATTATAAAAA
*
18144589 AATTATAGAAA
1 AATTATAAAAA
* *
18144600 ATTTATAAAAT
1 AATTATAAAAA
18144611 AATTAT
1 AATTAT
18144617 TTAAGAATTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AATTATAAAAA
Found at i:18144627 original size:22 final size:21
Alignment explanation
Indices: 18144573--18144616 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
18144563 CATGACTTTT
*
18144573 TAGATAATTATAAAAAAATTA
1 TAGAAAATTATAAAAAAATTA
*
18144594 TAGAAAATTTATAAAATAATTA
1 TAGAAAA-TTATAAAAAAATTA
18144616 T
1 T
18144617 TTAAGAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (21 bp):
TAGAAAATTATAAAAAAATTA
Found at i:18144784 original size:12 final size:12
Alignment explanation
Indices: 18144767--18144805 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
18144757 GTTTTTTAAT
18144767 AATTATTAAAAA
1 AATTATTAAAAA
* *
18144779 AATTATGAAATA
1 AATTATTAAAAA
18144791 AATTA-TAAAAA
1 AATTATTAAAAA
18144802 AATT
1 AATT
18144806 TAAAATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (12 bp):
AATTATTAAAAA
Found at i:18144816 original size:21 final size:24
Alignment explanation
Indices: 18144767--18144811 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
18144757 GTTTTTTAAT
*
18144767 AATTATTAAAAAAATTATGAAATA
1 AATTATTAAAAAAATTATAAAATA
18144791 AATTA-TAAAAAAATT-TAAAAT
1 AATTATTAAAAAAATTATAAAAT
18144812 TATTAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 10 0.50
24 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AATTATTAAAAAAATTATAAAATA
Found at i:18149191 original size:15 final size:15
Alignment explanation
Indices: 18149163--18149207 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
18149153 GTTATGTGGT
18149163 TTTTAATAAATTTTAA
1 TTTTAAT-AATTTTAA
18149179 TTTTAATAATTTT--
1 TTTTAATAATTTTAA
18149192 TTTT-ATAATTCTTAA
1 TTTTAATAATT-TTAA
18149207 T
1 T
18149208 GATTTTTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 6 0.23
13 6 0.23
15 7 0.27
16 7 0.27
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAATAATTTTAA
Found at i:18149240 original size:20 final size:20
Alignment explanation
Indices: 18149187--18149241 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 20
18149177 AATTTTAATA
18149187 ATTTTTTTTATAATTCTTAATG
1 ATTTTTTTTATAA-TCTT-ATG
**
18149209 A-TTTTTAGATAATCTT-TG
1 ATTTTTTTTATAATCTTATG
18149227 TATTTTTTTTATAAT
1 -ATTTTTTTTATAAT
18149242 TTTTATAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
18 2 0.07
19 1 0.04
20 14 0.52
21 9 0.33
22 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTTTTTTTATAATCTTATG
Found at i:18151069 original size:19 final size:18
Alignment explanation
Indices: 18151047--18151114 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
18151037 ATTTAAAATT
18151047 TATTAATAATTATAAAAAA
1 TATTAA-AATTATAAAAAA
* *
18151066 TATTAAATTTATTAAAAA
1 TATTAAAATTATAAAAAA
*
18151084 T-TGATAAAATTATTTAATAAA
1 TAT--TAAAATTA--TAAAAAA
18151105 TATTAAAATT
1 TATTAAAATT
18151115 CACGTCCAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
17 1 0.03
18 11 0.28
19 13 0.33
20 7 0.18
21 6 0.15
22 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (18 bp):
TATTAAAATTATAAAAAA
Found at i:18151078 original size:39 final size:38
Alignment explanation
Indices: 18151011--18151114 Score: 102
Period size: 39 Copynumber: 2.7 Consensus size: 38
18151001 GATTTATAGA
** * * *
18151011 AAAATTACAAAAAAACATATAAAATTATTTAAAATTTATT
1 AAAATTATTAAAAAATAT-TAAAATTATTAAAAATTGA-T
*
18151051 AATAATTA-TAAAAAATATTAAATTTATTAAAAATTGAT
1 AA-AATTATTAAAAAATATTAAAATTATTAAAAATTGAT
*
18151089 AAAATTATTTAATAAATATTAAAATT
1 AAAATTA-TTAAAAAATATTAAAATT
18151115 CACGTCCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
37 5 0.09
38 3 0.06
39 31 0.57
40 10 0.19
41 5 0.09
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (38 bp):
AAAATTATTAAAAAATATTAAAATTATTAAAAATTGAT
Found at i:18151080 original size:9 final size:9
Alignment explanation
Indices: 18151030--18151114 Score: 64
Period size: 10 Copynumber: 8.8 Consensus size: 9
18151020 AAAAAACATA
18151030 TAAAATTATT
1 TAAAATTA-T
18151040 TAAAATTTAT
1 TAAAA-TTAT
18151050 TAATAATTAT
1 TAA-AATTAT
* *
18151060 AAAAAATAT
1 TAAAATTAT
*
18151069 TAAATTTAT
1 TAAAATTAT
18151078 TAAAAATTGA-
1 T-AAAATT-AT
18151088 TAAAATTATT
1 TAAAATTA-T
*
18151098 TAATAAATAT
1 TAA-AATTAT
18151108 TAAAATT
1 TAAAATT
18151115 CACGTCCAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
8 1 0.02
9 21 0.35
10 28 0.47
11 10 0.17
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (9 bp):
TAAAATTAT
Found at i:18151097 original size:28 final size:28
Alignment explanation
Indices: 18151028--18151097 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 28
18151018 CAAAAAAACA
*
18151028 TATAAAATTATTTAAAATTTATTAATAAT
1 TATAAAATTA-TTAAAATTTATTAAAAAT
*
18151057 TATAAAAAATATT-AAATTTATTAAAAAT
1 TAT-AAAATTATTAAAATTTATTAAAAAT
18151085 TGATAAAATTATT
1 T-ATAAAATTATT
18151098 TAATAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 23 0.64
29 7 0.19
30 6 0.17
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (28 bp):
TATAAAATTATTAAAATTTATTAAAAAT
Found at i:18151220 original size:10 final size:9
Alignment explanation
Indices: 18151200--18151304 Score: 52
Period size: 10 Copynumber: 10.9 Consensus size: 9
18151190 TGACATAGTT
18151200 TTAATAATTA
1 TTAA-AATTA
18151210 TTAAAATTTA
1 TTAAAA-TTA
*
18151220 TAAAGTAAATTA
1 TTAA--A-ATTA
*
18151232 -TAAAAATA
1 TTAAAATTA
*
18151240 TTTAAATTA
1 TTAAAATTA
18151249 TTAATAATTA
1 TTAA-AATTA
*
18151259 TAATAAATTA
1 TTA-AAATTA
18151269 TTAAAATTTA
1 TTAAAA-TTA
* *
18151279 TAAAAACATA
1 TTAAAA-TTA
*
18151289 GTAAAA-TA
1 TTAAAATTA
18151297 TTAAAATT
1 TTAAAATT
18151305 TATAGGACAG
Statistics
Matches: 72, Mismatches: 14, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
8 10 0.14
9 16 0.22
10 38 0.53
11 3 0.04
12 4 0.06
13 1 0.01
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (9 bp):
TTAAAATTA
Found at i:18151265 original size:20 final size:20
Alignment explanation
Indices: 18151201--18151281 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 20
18151191 GACATAGTTT
18151201 TAAT-AATTATTAAAATTTA
1 TAATAAATTATTAAAATTTA
*
18151220 TAAAGTAAATTA-TAAAA-ATA
1 T-AA-TAAATTATTAAAATTTA
*
18151240 T-TTAAATTATTAATAA-TTA
1 TAATAAATTATTAA-AATTTA
18151259 TAATAAATTATTAAAATTTA
1 TAATAAATTATTAAAATTTA
18151279 TAA
1 TAA
18151282 AAACATAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
17 7 0.14
18 3 0.06
19 8 0.16
20 22 0.43
21 6 0.12
22 5 0.10
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (20 bp):
TAATAAATTATTAAAATTTA
Found at i:18151281 original size:17 final size:17
Alignment explanation
Indices: 18151225--18151282 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 17
18151215 ATTTATAAAG
*
18151225 TAAATTATAAAAATATT-
1 TAAATTATTAAAAT-TTA
18151242 TAAATTATTAATAATTATAA
1 TAAATTATTAA-AATT-T-A
18151262 TAAATTATTAAAATTTA
1 TAAATTATTAAAATTTA
18151279 TAAA
1 TAAA
18151283 AACATAGTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 16 0.44
18 5 0.14
19 4 0.11
20 11 0.31
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAATTATTAAAATTTA
Found at i:18151726 original size:11 final size:10
Alignment explanation
Indices: 18151704--18151774 Score: 60
Period size: 10 Copynumber: 7.4 Consensus size: 10
18151694 TTGGACGTCG
18151704 TTTTTAATAA
1 TTTTTAATAA
18151714 TTTTTAATAA
1 TTTTTAATAA
*
18151724 -ATTTAAT-A
1 TTTTTAATAA
* *
18151732 TTTTTTATCA
1 TTTTTAATAA
*
18151742 TTTCT-ATAA
1 TTTTTAATAA
*
18151751 -TCTTAATAA
1 TTTTTAATAA
18151760 TTTTTAGATAA
1 TTTTTA-ATAA
18151771 TTTT
1 TTTT
18151775 ACATTTTATA
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
8 3 0.06
9 18 0.38
10 19 0.40
11 8 0.17
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:18151781 original size:46 final size:47
Alignment explanation
Indices: 18151707--18151799 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 47
18151697 GACGTCGTTT
* *
18151707 TTAATAATTTTTAATAAATTTAATATTTTTTATCA-TTTCTATAATC
1 TTAATAATTTTTAATAAATTTAACATTTTATATCATTTTCTATAATC
* *
18151753 TTAATAATTTTTAGAT-AATTTTACATTTTATATTATTTTTCTATAAT
1 TTAATAATTTTTA-ATAAATTTAACATTTTATATCA-TTTTCTATAAT
18151800 TATTATTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
46 28 0.70
47 2 0.05
48 10 0.25
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.58
Consensus pattern (47 bp):
TTAATAATTTTTAATAAATTTAACATTTTATATCATTTTCTATAATC
Found at i:18161008 original size:107 final size:107
Alignment explanation
Indices: 18160690--18161354 Score: 860
Period size: 110 Copynumber: 6.1 Consensus size: 107
18160680 ACGAAAAAGG
* * * **
18160690 GAAAAAAACGAAAAAAAAAATTTTGGTGCTGGCCTATCAATGGCCAACACCCAGTACAATTTTTT
1 GAAAAAAA-TAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-----T
* *
18160755 TTAAAAAAA-ATC-TTTTTTTT-GTGTCAGAGTCAGATATCAGTATAC
60 TTAAAAAAATTTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
* * *
18160800 GAAAAAAAT-AAAAAAAAATTTTGGTGTTGGCTTGTCAATGGCCGGCACCCAGTACAATTTAAAA
1 GAAAAAAATAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAA
* *
18160864 AAA-TTC-TTTTTTTTCCTGTCAGAATCAGATATTAGTATAC
66 AAATTTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
* * *
18160904 GAAAAAATTAAAAAAAAAATTTGGGTGTTGGCCTGTTAATGGCCGGCACCCAGTACAATTTAAAA
1 GAAAAAAATAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAA
18160969 AAATTTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
66 AAATTTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
18161011 GAAAAAAATAAAAAAAAAATAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA
1 GAAAAAAAT------AAAA-AAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA
* * * *
18161076 ATTAAAAAAAATTCTTTTTTTTTTCGTGTCAGAATCAAATATCATTATAC
59 TTTAAAAAAATTTC-TTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
* * *
18161126 GAAAAAAAATAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAAAATTAA
1 G-AAAAAAATAAAAAAAAA-ATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAA
*
18161191 AAAAATTTCTTTTTTTTTTCGTGTCAGAATCAAATATCAGTATAC
64 AAAAATTTC-TTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
* * *
18161236 GAAAAAAAT-AAAAAAAATTTTGGGTGCTGGCCAGTCAATGGCCGGCACCTAGTAC-ATTTAAAA
1 GAAAAAAATAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTT-AAA
*
18161299 AAAATTTCTTTTTTTTTCCTGTCAGAATCAGATATCAGTATAC
65 AAAATTTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
18161342 GAAAAAAAATAAA
1 G-AAAAAAATAAA
18161355 CATAACTATA
Statistics
Matches: 505, Mismatches: 33, Indels: 36
0.88 0.06 0.06
Matches are distributed among these distances:
103 20 0.04
104 30 0.06
105 55 0.11
106 40 0.08
107 94 0.19
108 53 0.10
109 13 0.03
110 99 0.20
113 4 0.01
114 55 0.11
115 34 0.07
116 8 0.02
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (107 bp):
GAAAAAAATAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAA
AAATTTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
Found at i:18161028 original size:11 final size:11
Alignment explanation
Indices: 18161012--18161036 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18161002 TCAGTATACG
18161012 AAAAAAATAAA
1 AAAAAAATAAA
18161023 AAAAAAATAAA
1 AAAAAAATAAA
18161034 AAA
1 AAA
18161037 TTTGGGTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:18162377 original size:55 final size:54
Alignment explanation
Indices: 18162313--18162474 Score: 245
Period size: 55 Copynumber: 3.0 Consensus size: 54
18162303 TCTGACACTC
* * * * *
18162313 TTTTTTTTCATTCAATCTCATTAATTTTAAATTTTTTTTGTACTTATAACACCT
1 TTTTTTTTCATTCAATCTCATTTATTTCAAATTTTTTTTCTACATCTAACACCT
*
18162367 TTTTCTTTTCATTCAATCTCATTTATTTCAAA-TTTTTTCCTACATCTAACACCT
1 TTTT-TTTTCATTCAATCTCATTTATTTCAAATTTTTTTTCTACATCTAACACCT
18162421 TTTTTTTTCATTCAATCTCATTTATTTCAGAATTTTTTTTCTACATCTAACACC
1 TTTTTTTTCATTCAATCTCATTTATTTCA-AATTTTTTTTCTACATCTAACACC
18162475 CTTTCTTCAT
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
53 25 0.26
54 28 0.29
55 45 0.46
ACGTcount: A:0.25, C:0.20, G:0.01, T:0.54
Consensus pattern (54 bp):
TTTTTTTTCATTCAATCTCATTTATTTCAAATTTTTTTTCTACATCTAACACCT
Found at i:18162484 original size:53 final size:53
Alignment explanation
Indices: 18162301--18162485 Score: 221
Period size: 55 Copynumber: 3.4 Consensus size: 53
18162291 CTATCCTATC
* * * * *
18162301 CATCTGACACTCTTTTTTTTCATTCAATCTCATTAATTTTAAATTTTTTTTGTA
1 CATCTAACAC-CTTTTTCTTCATTCAATCTCATTTATTTCAAATTTTTTTTCTA
* * *
18162355 CTTATAACACCTTTTTCTTTTCATTCAATCTCATTTATTTCAAA-TTTTTTCCTA
1 CATCTAACACCTTTTTC--TTCATTCAATCTCATTTATTTCAAATTTTTTTTCTA
*
18162409 CATCTAACACCTTTTTTTTTCATTCAATCTCATTTATTTCAGAATTTTTTTTCTA
1 CATCTAACACC-TTTTTCTTCATTCAATCTCATTTATTTCA-AATTTTTTTTCTA
*
18162464 CATCTAACACC-CTTTCTTCATT
1 CATCTAACACCTTTTTCTTCATT
18162486 TTCATTTCTA
Statistics
Matches: 112, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
53 38 0.34
54 26 0.23
55 48 0.43
ACGTcount: A:0.24, C:0.22, G:0.02, T:0.53
Consensus pattern (53 bp):
CATCTAACACCTTTTTCTTCATTCAATCTCATTTATTTCAAATTTTTTTTCTA
Found at i:18165729 original size:110 final size:109
Alignment explanation
Indices: 18165485--18166123 Score: 667
Period size: 110 Copynumber: 6.0 Consensus size: 109
18165475 GCACCAAATT
18165485 TTTTTTTCGTATACTGATATCTGATTCTGACACG-AAAAAAAA-AAA------TTT-AATTGTAC
1 TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTTAAATTGTAC
* * * * *
18165541 TGGGTGCAGACCACTGACACGCCAACACCCAAAAAAATTATTTTTTTTA
66 TGGGTGCCGGCCATTGACAGGCCAGCACCC---AAAA-T-TTTTTTTTA
*****
18165590 TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAAAGAAAAAAAATTTTAAA-TGT
1 TTTTTTTCGTATACTGATATCTGATTCTGACACG--AAAAAAAAAGAAATTTTTTTTTAAATTGT
**
18165654 ACTGGGTGCCGGCCATTGACAGGTTAGCACCCAAAATTTTTTTTTA
64 ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTA
* * *
18165700 TTTTTTTCGTATACTGATATTTGATTCTGACACG---AAAAAA-AAA-----TTTT-ATTTGTAT
1 TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTTAAATTGTAC
*
18165755 TGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTAA
66 TGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTA
**
18165799 TTTTTTT-GTATACTGATATCTGATTCTGACACG-------AA-ATTTTTTTTTTTAAATTGTAC
1 TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTTAAATTGTAC
*
18165855 TGGGTGCCGGCAATTGACAGGCCAGCACCCAAAAAAAGATTTTTTTTTTA
66 TGGGTGCCGGCCATTGACAGGCCAGCACCC----AAA-A-TTTTTTTTTA
18165905 TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAG-AATTTTTTTTTAAAATTGTA
1 TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTT-AAATTGTA
* *
18165969 CTGGGTGCCGGCCATTGACAGGTCATCACCC--AATTTTTTTTTA
65 CTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTA
* * * *
18166012 CTTTTTTCGTATTCTGATATTTAATTCTGACACGAAAAAAAAAAGAAATTTTTTTTTTAAAATTG
1 TTTTTTTCGTATACTGATATCTGATTCTGACACG-AAAAAAAAAGAAA-TTTTTTTTT-AAATTG
18166077 TACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTT
63 TACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAATTTTTTTTT
18166124 TTTCGTTTTT
Statistics
Matches: 463, Mismatches: 31, Indels: 72
0.82 0.05 0.13
Matches are distributed among these distances:
94 3 0.01
98 26 0.06
99 60 0.13
100 35 0.08
104 6 0.01
105 41 0.09
106 16 0.03
107 66 0.14
108 19 0.04
109 6 0.01
110 89 0.19
111 1 0.00
112 4 0.01
113 11 0.02
114 11 0.02
115 67 0.14
116 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38
Consensus pattern (109 bp):
TTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTTAAATTGTAC
TGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTA
Done.