Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 75 of 218
Found at i:22455246 original size:33 final size:33
Alignment explanation
Indices: 22455204--22455275 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
22455194 GAGCACTTTT
22455204 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
1 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
22455237 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
1 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
*
22455270 CCAAAA
1 TCAAAA
22455276 TTCCCAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (33 bp):
TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
Found at i:22459827 original size:16 final size:16
Alignment explanation
Indices: 22459803--22459836 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
22459793 AATTGTGTAA
*
22459803 GTATGTACGTAAACTC
1 GTATCTACGTAAACTC
22459819 GTATCTACGTAAACTC
1 GTATCTACGTAAACTC
22459835 GT
1 GT
22459837 TGAGTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (16 bp):
GTATCTACGTAAACTC
Found at i:22460007 original size:226 final size:226
Alignment explanation
Indices: 22459613--22460029 Score: 762
Period size: 226 Copynumber: 1.8 Consensus size: 226
22459603 TAGGGGAAAT
*
22459613 AGTAATTTTTCCAAAAATGTTTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
1 AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
* *
22459678 TCATTCGTATAGATCCGGTTAGACCTCGTACAGAGTTAGATCGGGGAAAAGGAAAAATATCGGAT
66 TCATTCGTATAGATCCGGTTAGACCTCATACAGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
*
22459743 TAGTCGCCTTCGTATCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTATG
131 TAGTCGCCTTCGTACCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTATG
22459808 TACGTAAACTCGTATCTACGTAAACTCGTTG
196 TACGTAAACTCGTATCTACGTAAACTCGTTG
* *
22459839 AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATTAATTATGTTGAATTGAGTTAAAT
1 AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
*
22459904 TCATTCGTATAGATCCGGTTAGACCTCATACGGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
66 TCATTCGTATAGATCCGGTTAGACCTCATACAGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
*
22459969 TAGTCGCCTTCGTACCTACGTACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAG
131 TAGTCGCCTTCGTACCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAG
22460030 CATATGATTT
Statistics
Matches: 183, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
226 183 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (226 bp):
AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
TCATTCGTATAGATCCGGTTAGACCTCATACAGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
TAGTCGCCTTCGTACCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTATG
TACGTAAACTCGTATCTACGTAAACTCGTTG
Found at i:22460590 original size:17 final size:17
Alignment explanation
Indices: 22460568--22460601 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22460558 TTATTGATTC
*
22460568 GGAAGCTCGTTCGAGTT
1 GGAAGCTCGTTAGAGTT
*
22460585 GGAAGCTTGTTAGAGTT
1 GGAAGCTCGTTAGAGTT
22460602 ATATCACACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.32
Consensus pattern (17 bp):
GGAAGCTCGTTAGAGTT
Found at i:22465140 original size:10 final size:11
Alignment explanation
Indices: 22465125--22465170 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
22465115 AACTAAATCC
22465125 TTTCTCTC-AA
1 TTTCTCTCAAA
*
22465135 TTTCTCTCTAA
1 TTTCTCTCAAA
22465146 TATTCTCTCAAA
1 T-TTCTCTCAAA
*
22465158 TTCCTCTCAAA
1 TTTCTCTCAAA
22465169 TT
1 TT
22465171 CCTATTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
10 8 0.25
11 14 0.44
12 10 0.31
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (11 bp):
TTTCTCTCAAA
Found at i:22465151 original size:12 final size:10
Alignment explanation
Indices: 22465125--22465167 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
22465115 AACTAAATCC
22465125 TTTCTCTCAA
1 TTTCTCTCAA
22465135 TTTCTCTCTAA
1 TTTCTCTC-AA
22465146 TATTCTCTCAAA
1 T-TTCTCTC-AA
*
22465158 TTCCTCTCAA
1 TTTCTCTCAA
22465168 ATTCCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 10 0.34
11 9 0.31
12 10 0.34
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (10 bp):
TTTCTCTCAA
Found at i:22467399 original size:49 final size:49
Alignment explanation
Indices: 22467344--22467464 Score: 224
Period size: 49 Copynumber: 2.5 Consensus size: 49
22467334 GTTTATATTA
*
22467344 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
22467393 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
*
22467442 ATTTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
22467465 AATATTCTTA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
Found at i:22468778 original size:18 final size:17
Alignment explanation
Indices: 22468746--22468790 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
22468736 AAGTATATAA
22468746 AAATTATTTAAAAATAT
1 AAATTATTTAAAAATAT
*
22468763 AAATTTTTTAAAAA-AT
1 AAATTATTTAAAAATAT
*
22468779 -AATTATTGAAAA
1 AAATTATTTAAAA
22468791 GTATCATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.40
16 2 0.08
17 13 0.52
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATTATTTAAAAATAT
Found at i:22476319 original size:29 final size:29
Alignment explanation
Indices: 22476277--22476374 Score: 124
Period size: 29 Copynumber: 3.2 Consensus size: 29
22476267 GTGAACCATG
* *
22476277 ATATGTGAACCCTAGAATTATGCGAGCCT
1 ATATGTGGACCCTAGAATTAGGCGAGCCT
* *
22476306 ATATGTGGACCCTAGGATTAGGTGAGCCT
1 ATATGTGGACCCTAGAATTAGGCGAGCCT
22476335 ATATGTATGTGACCCCTAGAATTAGGCGAGCCT
1 ATATG--TG-GA-CCCTAGAATTAGGCGAGCCT
22476368 ATATGTG
1 ATATGTG
22476375 AAACCTAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
29 30 0.51
31 4 0.07
32 2 0.03
33 23 0.39
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (29 bp):
ATATGTGGACCCTAGAATTAGGCGAGCCT
Found at i:22476352 original size:33 final size:32
Alignment explanation
Indices: 22476278--22476373 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 32
22476268 TGAACCATGA
*
22476278 TATGTGAACCCTAGAATTATGCGAGCCTATATG
1 TATGTG-ACCCTAGAATTAGGCGAGCCTATATG
* *
22476311 --TG-GACCCTAGGATTAGGTGAGCCTATATG
1 TATGTGACCCTAGAATTAGGCGAGCCTATATG
22476340 TATGTGACCCCTAGAATTAGGCGAGCCTATATG
1 TATGTGA-CCCTAGAATTAGGCGAGCCTATATG
22476373 T
1 T
22476374 GAAACCTAGG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
29 23 0.43
30 1 0.02
31 4 0.07
32 2 0.04
33 24 0.44
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (32 bp):
TATGTGACCCTAGAATTAGGCGAGCCTATATG
Found at i:22476396 original size:62 final size:62
Alignment explanation
Indices: 22476278--22476397 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
22476268 TGAACCATGA
* * * ** **
22476278 TATGTGAACCCTAGAATTATGCGAGCCTATATGTGGACCCTAGGATTAGGTGAGCCTATATG
1 TATGTGAACCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACAGGCAAGCCTATATG
* *
22476340 TATGTGACCCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACATGCAAGCCTA
1 TATGTGAACCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACAGGCAAGCCTA
22476398 CATGCGAACC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (62 bp):
TATGTGAACCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACAGGCAAGCCTATATG
Found at i:22476456 original size:29 final size:29
Alignment explanation
Indices: 22476362--22476489 Score: 112
Period size: 29 Copynumber: 4.4 Consensus size: 29
22476352 AGAATTAGGC
* * *
22476362 GAGCCTATATGTGAAACCTAGGAACATGC
1 GAGCCTATATGCGAACCCTAGGAACATGT
* * * *
22476391 AAGCCTACATGCGAACCCTAGGAAAATAT
1 GAGCCTATATGCGAACCCTAGGAACATGT
** * *
22476420 GAATCTATGTGCGAACCCTAGGAACTTGT
1 GAGCCTATATGCGAACCCTAGGAACATGT
* ** *
22476449 GAGCCTATATGCGATCCCTAGGTTCATGC
1 GAGCCTATATGCGAACCCTAGGAACATGT
*
22476478 AAGCCTATATGC
1 GAGCCTATATGC
22476490 CATGCGAACC
Statistics
Matches: 75, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (29 bp):
GAGCCTATATGCGAACCCTAGGAACATGT
Found at i:22476511 original size:34 final size:34
Alignment explanation
Indices: 22476457--22476522 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
22476447 GTGAGCCTAT
* * * *
22476457 ATGCGATCCCTAGGTTCATGCAAGCCTATATGCC
1 ATGCGAACCCGAGGTACATGCAAGCATATATGCC
*
22476491 ATGCGAACCCGAGGTACATGCGAGCATATATG
1 ATGCGAACCCGAGGTACATGCAAGCATATATG
22476523 ATCATGTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (34 bp):
ATGCGAACCCGAGGTACATGCAAGCATATATGCC
Found at i:22494619 original size:22 final size:22
Alignment explanation
Indices: 22494591--22494641 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
22494581 TTCTCTTAAA
*
22494591 CTCTCAATTTCCTTCC-AAAAT
1 CTCTCAATTTCATTCCAAAAAT
22494612 CCTCTCAATTTCATTCCAAAAAT
1 -CTCTCAATTTCATTCCAAAAAT
22494635 CTCTCAA
1 CTCTCAA
22494642 ATCCATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.35
Consensus pattern (22 bp):
CTCTCAATTTCATTCCAAAAAT
Found at i:22495829 original size:7 final size:7
Alignment explanation
Indices: 22495819--22495843 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22495809 ATAGTATTTA
22495819 GTATTAT
1 GTATTAT
22495826 GTATTAT
1 GTATTAT
22495833 GTATTAT
1 GTATTAT
22495840 GTAT
1 GTAT
22495844 ATAACTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:22495829 original size:14 final size:15
Alignment explanation
Indices: 22495812--22495843 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
22495802 CCGGTATATA
22495812 GTATTTA-GTATTAT
1 GTATTTATGTATTAT
22495826 GTA-TTATGTATTAT
1 GTATTTATGTATTAT
22495840 GTAT
1 GTAT
22495844 ATAACTGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.19
14 13 0.81
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (15 bp):
GTATTTATGTATTAT
Found at i:22497054 original size:26 final size:25
Alignment explanation
Indices: 22496998--22497055 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
22496988 TATTTTGATA
22496998 TTATTTGATATAATAAAATAGAAAT
1 TTATTTGATATAATAAAATAGAAAT
* * *
22497023 TCTATTTGATGTAATAAAAATCGTAAT
1 T-TATTTGATATAAT-AAAATAGAAAT
22497050 TTATTT
1 TTATTT
22497056 CATACCCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 17 0.61
27 10 0.36
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (25 bp):
TTATTTGATATAATAAAATAGAAAT
Found at i:22497094 original size:29 final size:29
Alignment explanation
Indices: 22497059--22497946 Score: 1339
Period size: 29 Copynumber: 31.3 Consensus size: 29
22497049 TTTATTTCAT
*
22497059 ACCCTAACCCTAACTTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497088 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
**
22497117 ACCCTAACTTTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
**
22497146 ACCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497175 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497204 ACCATAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497232 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497261 ACCATAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497289 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
**
22497318 ACCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497347 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
* * *
22497376 CCCCAAACCTTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497404 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497432 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497460 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497489 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
* *
22497518 ATCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
* *
22497547 ACCCTAACCTTAACCTAATTTATTTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497576 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497605 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
* *
22497634 ACACTAACCTTAACCTAATTTAATT--AA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497661 A----AACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
**
22497686 ACCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497715 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497743 ACCCTAACCTTAACCTAATTTAATT-AAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
* **
22497771 ATCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497800 ACCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
*
22497829 ACCCTAACCCTAACCTAATTTATTTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
**
22497858 TTCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497887 ACCCTAACCCT-ACCATAATTTAATT--AA
1 ACCCTAACCCTAACC-TAATTTAATTAAAA
22497914 A----AACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCCTAACCTAATTTAATTAAAA
22497939 ACCCTAAC
1 ACCCTAAC
22497947 TTAATTTATT
Statistics
Matches: 788, Mismatches: 53, Indels: 36
0.90 0.06 0.04
Matches are distributed among these distances:
23 35 0.04
24 3 0.00
25 6 0.01
27 6 0.01
28 188 0.24
29 550 0.70
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (29 bp):
ACCCTAACCCTAACCTAATTTAATTAAAA
Found at i:22497692 original size:18 final size:20
Alignment explanation
Indices: 22497646--22497688 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
22497636 ACTAACCTTA
22497646 ACCTAATTTAATTAAAAACCC
1 ACCTAATTTAATTAAAAA-CC
22497667 TAACCTAATTTAATTAAAAACC
1 --ACCTAATTTAATTAAAAACC
22497689 CTAACATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (20 bp):
ACCTAATTTAATTAAAAACC
Found at i:22504746 original size:18 final size:18
Alignment explanation
Indices: 22504723--22504757 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22504713 AAGCCTTTAA
*
22504723 AAAAATGTATATATATTT
1 AAAAATGCATATATATTT
*
22504741 AAAAATGCGTATATATT
1 AAAAATGCATATATATT
22504758 ATATATTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.40
Consensus pattern (18 bp):
AAAAATGCATATATATTT
Found at i:22506369 original size:6 final size:6
Alignment explanation
Indices: 22506350--22506400 Score: 75
Period size: 6 Copynumber: 8.3 Consensus size: 6
22506340 TCTACATTAA
* *
22506350 TTCATT TCTCATT TTCATT TTCATT TTCATT TTCATT CTAATT TTCATT
1 TTCATT T-TCATT TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT
22506399 TT
1 TT
22506401 GGATAAAACC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
6 34 0.85
7 6 0.15
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (6 bp):
TTCATT
Found at i:22508010 original size:39 final size:37
Alignment explanation
Indices: 22507943--22508076 Score: 101
Period size: 39 Copynumber: 3.5 Consensus size: 37
22507933 ACCAGAATGG
*
22507943 CACCCAGTGTCTCATCGG-ATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGTCTCATCGGCA-AG-CCGAAG-AATAGTTGA
* *
22507982 CACCCAGTGTCTCATCGGCCAAGCCGAAGTA-AGTTGG
1 CACCCAGTGTCTCATCGG-CAAGCCGAAGAATAGTTGA
* ** * * *
22508019 TACCCAGTACCTCATCGAATCTATCCGAAGTAATAGTATGA
1 CACCCAGTGTCTCATCG--GCAAGCCGAAG-AATAGT-TGA
22508060 CACCCAGTGTCTCATCG
1 CACCCAGTGTCTCATCG
22508077 ACTCAAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
37 19 0.26
38 9 0.12
39 24 0.32
40 5 0.07
41 17 0.23
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (37 bp):
CACCCAGTGTCTCATCGGCAAGCCGAAGAATAGTTGA
Found at i:22509151 original size:27 final size:26
Alignment explanation
Indices: 22509114--22509169 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
22509104 AATCCCAAAA
* *
22509114 TTTCTTTCTTTCCTTCCCT-TTTTCTT
1 TTTCTTTCTTT-CTCCCCTGTTTTCGT
22509140 TTTCTTTCCTTTCTCCCCTGTTTTCGT
1 TTTCTTT-CTTTCTCCCCTGTTTTCGT
22509167 TTT
1 TTT
22509170 GCTATTCTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.00, C:0.30, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTCTTTCTTTCTCCCCTGTTTTCGT
Found at i:22516939 original size:20 final size:20
Alignment explanation
Indices: 22516914--22516951 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22516904 AATTTTTTAA
*
22516914 ATATAAAAATTTTAAAAAAT
1 ATATAAAAATATTAAAAAAT
22516934 ATATAAAAATATTAAAAA
1 ATATAAAAATATTAAAAA
22516952 CTTTAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATAAAAATATTAAAAAAT
Found at i:22516943 original size:28 final size:27
Alignment explanation
Indices: 22516912--22516978 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 27
22516902 TTAATTTTTT
*
22516912 AAATATAAAAATTTTAAAAAATATATAA
1 AAATATAAAAACTTTAAAAAATATA-AA
*
22516940 AAATATTAAAAACTTTAAAAAGTATAAA
1 AAATA-TAAAAACTTTAAAAAATATAAA
* *
22516968 TATTATAAAAA
1 AAATATAAAAA
22516979 ATATTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.18
28 10 0.29
29 18 0.53
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (27 bp):
AAATATAAAAACTTTAAAAAATATAAA
Found at i:22516976 original size:18 final size:18
Alignment explanation
Indices: 22516915--22516983 Score: 52
Period size: 18 Copynumber: 3.7 Consensus size: 18
22516905 ATTTTTTAAA
* *
22516915 TATAAAAATTTTAAAAAAT
1 TATAAAAATATT-AAATAT
*
22516934 ATATAAAAATATTAAAAACT
1 -TATAAAAATATTAAATA-T
22516954 T-TAAAAAGTA-TAAATAT
1 TATAAAAA-TATTAAATAT
22516971 TATAAAAAATATT
1 TAT-AAAAATATT
22516984 TTTAAATATT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
17 2 0.05
18 14 0.33
19 14 0.33
20 12 0.29
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (18 bp):
TATAAAAATATTAAATAT
Found at i:22520115 original size:21 final size:21
Alignment explanation
Indices: 22520076--22520130 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
22520066 TCAAGAAATC
*
22520076 TTTAACGAAACTTTAAAGTAAG
1 TTTAA-GAACCTTTAAAGTAAG
*
22520098 TTTAAGAACCTTTTAAGTAAG
1 TTTAAGAACCTTTAAAGTAAG
*
22520119 TTTAGGAACCTT
1 TTTAAGAACCTT
22520131 CTAATCATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (21 bp):
TTTAAGAACCTTTAAAGTAAG
Found at i:22524533 original size:21 final size:20
Alignment explanation
Indices: 22524509--22524547 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22524499 CTTTCCTTCA
*
22524509 CATAAAATATTTAAAAAAATT
1 CATAAAAT-TGTAAAAAAATT
22524530 CATAAAATTGTAAAAAAA
1 CATAAAATTGTAAAAAAA
22524548 AAAAGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (20 bp):
CATAAAATTGTAAAAAAATT
Found at i:22525874 original size:32 final size:33
Alignment explanation
Indices: 22525802--22525874 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 33
22525792 GTTGTGAAGT
*
22525802 ACTTAATTGATTTTTTTTAAATTATTTTATGAG
1 ACTTAAATGATTTTTTTTAAATTATTTTATGAG
*
22525835 AGTTTAAATGA-TTTTTTT-AATTATTTT-TGGAGG
1 A-CTTAAATGATTTTTTTTAAATTATTTTAT-GA-G
22525868 ACTTAAA
1 ACTTAAA
22525875 AATTATAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
31 1 0.03
32 16 0.47
33 10 0.29
34 7 0.21
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (33 bp):
ACTTAAATGATTTTTTTTAAATTATTTTATGAG
Found at i:22533958 original size:17 final size:17
Alignment explanation
Indices: 22533938--22533970 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22533928 TTTTAATTGT
*
22533938 TTTTATATTTTTTTTAG
1 TTTTATATCTTTTTTAG
22533955 TTTTATATCTTTTTTA
1 TTTTATATCTTTTTTA
22533971 AATTCTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATATCTTTTTTAG
Found at i:22534095 original size:17 final size:18
Alignment explanation
Indices: 22534073--22534117 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
22534063 ATAATTTTTC
22534073 TAAATTTTTGTA-ATATT
1 TAAATTTTTGTATATATT
* *
22534090 TAAATTTTTTTATATTTT
1 TAAATTTTTGTATATATT
22534108 TATAATTTTT
1 TA-AATTTTT
22534118 AAAAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.46
18 6 0.25
19 7 0.29
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TAAATTTTTGTATATATT
Found at i:22534115 original size:9 final size:9
Alignment explanation
Indices: 22534037--22534131 Score: 70
Period size: 9 Copynumber: 10.6 Consensus size: 9
22534027 TAACATATTA
22534037 ATAATATTTT
1 ATAAT-TTTT
* *
22534047 ATAATATTC
1 ATAATTTTT
22534056 AT--TTTTT
1 ATAATTTTT
22534063 ATAATTTTT
1 ATAATTTTT
*
22534072 CTAAATTTTT
1 AT-AATTTTT
* *
22534082 GTAATATTT
1 ATAATTTTT
22534091 A-AATTTTT
1 ATAATTTTT
*
22534099 TTATATTTTT
1 ATA-ATTTTT
22534109 ATAATTTTT
1 ATAATTTTT
* *
22534118 AAAAATTTT
1 ATAATTTTT
22534127 ATAAT
1 ATAAT
22534132 ATGTTAATAA
Statistics
Matches: 65, Mismatches: 15, Indels: 11
0.71 0.16 0.12
Matches are distributed among these distances:
7 5 0.08
8 6 0.09
9 33 0.51
10 21 0.32
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:22534187 original size:30 final size:31
Alignment explanation
Indices: 22534153--22534239 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 31
22534143 TGTTATGCTT
22534153 AAATAATTAAAAATCAATTAAACA-CTTCTA
1 AAATAATTAAAAATCAATTAAACACCTTCTA
*
22534183 AAATAATTTTAAAAAAAATCAATT-AACACCTTGTA
1 AAATAA--TT---AAAAATCAATTAAACACCTTCTA
22534218 AAATAATTAAAAATCAATTAAA
1 AAATAATTAAAAATCAATTAAA
22534240 TCCTCCGTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 13
0.78 0.02 0.21
Matches are distributed among these distances:
30 17 0.35
31 2 0.04
32 2 0.04
33 2 0.04
34 4 0.08
35 22 0.45
ACGTcount: A:0.59, C:0.10, G:0.01, T:0.30
Consensus pattern (31 bp):
AAATAATTAAAAATCAATTAAACACCTTCTA
Found at i:22535852 original size:32 final size:32
Alignment explanation
Indices: 22535797--22535858 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
22535787 ATTTAGTAAT
* *
22535797 TATAAAAAAATATTGACATATATATGTATATA
1 TATAAAAAAATATTAACAGATATATGTATATA
*
22535829 TATAAAAAAAGT-TTAACAGATATATTTATA
1 TATAAAAAAA-TATTAACAGATATATGTATA
22535859 AAAGTATGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.37
Consensus pattern (32 bp):
TATAAAAAAATATTAACAGATATATGTATATA
Found at i:22536093 original size:3 final size:3
Alignment explanation
Indices: 22536085--22536144 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
22536075 TGCGGTAAGT
* * *
22536085 ATA ATA ATA AAA ATA TATA AT- ATA ATG ATA ATA A-A CTA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22536129 ATA CAGTA ATA ATA AT
1 ATA -A-TA ATA ATA AT
22536145 GTAATATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 3 0.07
3 36 0.78
4 5 0.11
5 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:22537878 original size:24 final size:24
Alignment explanation
Indices: 22537851--22537899 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
22537841 TTATAACGAA
22537851 AGCATTCATCATTTGAACAAAAAC
1 AGCATTCATCATTTGAACAAAAAC
22537875 AGCATTCATCATTTGAACAAAAAC
1 AGCATTCATCATTTGAACAAAAAC
22537899 A
1 A
22537900 AGTTTAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24
Consensus pattern (24 bp):
AGCATTCATCATTTGAACAAAAAC
Found at i:22541586 original size:217 final size:217
Alignment explanation
Indices: 22540932--22542652 Score: 1893
Period size: 217 Copynumber: 7.9 Consensus size: 217
22540922 TTTTAGGGAT
* * * * * * *
22540932 ATGAGTGACAACCTTGAAAGGTCAACTGGTA-TTATGATCAACGTACGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGT
* ** * *
22540996 AATAAGCATTTTGATTTTTTGGTTTTTGTGACTTTTGCATTAATAAAAGTGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * **
22541061 GTGATTGAGTATTGAAGCGATATGACAATTATTAACTTTTCCACATATTTATTGTCGGCTTGTTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
* *
22541126 GTGAGCAGCCATAACATTGGGAAC
195 GTGA-CAGTCATAACGTTGGGAAC
* * * * * **
22541150 ATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAGCATACGTTGGGAACATGCATGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGT
* * * * * * * * * *
22541215 AATAAGCGTTTTAATTTTTTGGGTTTTGCGACTTTTTCATGAATAAATGTGATACACGTTTCTAA
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * *
22541280 GTGACTGAGTA-TGAAGCAATGTGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
* *
22541344 GTGAACAGTCAGAACATTGGGAAC
195 GTG-ACAGTCATAACGTTGGGAAC
* *
22541368 ATGAGTGACAACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTA
1 ATGAGTGACGACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGTA
** * * ** * ** *
22541433 ATAAGTGTTTTGATTTTTAGGGATTTACGACTTTTTCATTAATAAATGTGATACACATTTTCATG
66 ATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCATG
** * * * * *
22541498 TGACCGAGTATTGAAGCGACACGACAATTATTAACTTTAT-CTCGTATTTATTGTCGATTTGCTA
131 TGATTGAGTATTGAAGCGATATGACAATCATTAACTTT-TCCTCATATTTATTGTCGATTTGTTA
* * * *
22541562 GTGATAGTTATAACATTAGGAAC
195 GTGACAGTCATAACGTTGGGAAC
** * * **
22541585 ATGAGTGGTGACTTTGAAAGTCAACT-AGTACTTATAATTAACATATGTTAGGAACATGCATGGT
1 ATGAGTGACGACCTTGAAAGTCAATTGA-TACTTATAATTAACATATGTTAGGAACATGTGTGGT
* * ** * *
22541649 AATAAACTTTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * * * * *
22541714 GTGATTGAATACTAAAGCAAT-TCGACAATCATTAACTTTTGCACATACTTATTGTCGATTTGTT
130 GTGATTGAGTATTGAAGCGATAT-GACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTT
* *
22541778 AGTAAGCAGCCATAACGTTGGGAAC
194 AGTGA-CAGTCATAACGTTGGGAAC
* * * * * * **
22541803 ATGA-TGACGACCTTGAAAGGTCAATTGGTATTTATGATTAGCATACGTTGGGAACATACGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGT
* * * *
22541867 AATAAGCATTTTGATTTTTTGGGTTTTGCT-ACTTTTGCATTAATAAATGCGATACATGTTTCCA
65 AATAAGCATTCTGATTTTTTGGGATTTG-TGACTTTTACATTAATAAATGTGATACATGTTTCCA
* * * * * ** *
22541931 TATGATTGATTATAGAAGCGATGTGACAATCATTAAATTTTCCTTGTATTTATTTTCGATTTGTT
129 TGTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTT
*
22541996 AGTGA-ATGGTCAGAACGTTGGGAAC
194 AGTGACA--GTCATAACGTTGGGAAC
* * * * *
22542021 ATGAGTAACCACCTTGAAAGTTAATTGGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
1 ATGAGTGACGACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGTA
* * * * *
22542086 ACAAGCGTTCTGATTTTTTGGGATTTGTAACTTTTGCGTTAATAAATGTGATGCACAT-TTT-CA
66 ATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGAT--ACATGTTTCCA
* * * *
22542149 TGTGATTGAGTATTGAATCGATAT-AGCAATCATTAACTTTTCCTCACATTTATTGTTGATTTGC
129 TGTGATTGAGTATTGAAGCGATATGA-CAATCATTAACTTTTCCTCATATTTATTGTCGATTTGT
*
22542213 TAGTGACCGTCATAACGTTGGGAAC
193 TAGTGACAGTCATAACGTTGGGAAC
* **
22542238 ATGAGTGACGACCTTGAAAGTCAACT-AGTACTTATAATTAATGTATGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAAGTCAATTGA-TACTTATAATTAACATATGTTAGGAACATGTGTGGT
** * *
22542302 AATAAGCATTCTGATTTTCGGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTTCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * * *
22542367 GAGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTATTGATTTGCTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
*
22542432 GTGACAGTTATAACGTTGGGAAC
195 GTGACAGTCATAACGTTGGGAAC
* *
22542455 ATGAGTGACGACCTTGAAAGTCAAAT-AGTACTTATAATTAACGTATGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAAGTCAATTGA-TACTTATAATTAACATATGTTAGGAACATGTGTGGT
** *
22542519 AATAAGCATTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * * * * *
22542584 GTGATTGAATATTGAAGCGATATGACAATCATTAACTTTTGCACATACTTATTATCGGTTTGGTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
22542649 GTGA
195 GTGA
22542653 ACAGACGTAA
Statistics
Matches: 1280, Mismatches: 199, Indels: 49
0.84 0.13 0.03
Matches are distributed among these distances:
215 4 0.00
216 6 0.00
217 676 0.53
218 479 0.37
219 111 0.09
220 4 0.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (217 bp):
ATGAGTGACGACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGTA
ATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCATG
TGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTAG
TGACAGTCATAACGTTGGGAAC
Found at i:22542186 original size:653 final size:653
Alignment explanation
Indices: 22540932--22542656 Score: 2255
Period size: 653 Copynumber: 2.6 Consensus size: 653
22540922 TTTTAGGGAT
* * * * *
22540932 ATGAGTGACAACCTTGAAAGGTCAACTGGTA-TTATGATCAACGTACGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGT
** ** * * *
22540996 AATAAGCATTT-TGATTTTTTGGTTTTTGTGACTTTTGCATTAATAAAAGTGATACATGTTTCCA
65 AATAAGC-TTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCA
* * **
22541060 TGTGATTGAGTATTGAAGCGATATGACAATTATTAACTTTTCCACATATTTATTGTCGGCTTGTT
129 TGTGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTT
*
22541125 AGTGAGCAGCCATAACATTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATT
194 AGTGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATT
* * * * *
22541190 AGCATACGTTGGGAACATGCATGGTAATAAGCGTTTTAATTTTTTGGGTTTTGCGACTTTTTCAT
259 AGCATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCTACTTTTACAT
* * * * * *
22541255 GAATAAATGTGATACACGTTTCTA-AGTGACTGAGTATGAAGCAATGTGACAATCATTAACTTTT
324 TAATAAATGTGATACATGTTTCCATA-TGATTGAATATGAAGCGATGTGACAATCATTAACTTTT
*
22541319 CCTCATATTTATTGTCGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTG
388 CCTCATATTTATTGTCGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTAACAACCTTG
* * *
22541384 AAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGTGTTTTGATTT
453 AAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAACAAGCGTTCTGATTT
* *
22541449 TTAGGGATTTACGACTTTTTCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAG
518 TTAGGGATTTACAACTTTTGCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAG
* * ** * *
22541514 CGACACGACAATTATTAACTTTAT-CTCGTATTTATTGTCGATTTGCTAGTGATAGTTATAACAT
583 CGACAAGACAATCATTAACTTT-TCCTCACATTTATTGTCGATTTGCTAGTGACAGTCATAACAT
22541578 TAGGAAC
647 TAGGAAC
** * * **
22541585 ATGAGTGGTGACTTTGAAAGTCAACTAGTACTTATAATTAACATATGTTAGGAACATGCATGGTA
1 ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
* *
22541650 ATAAACTTTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCCATG
66 ATAAGCTTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCATG
* * * * *
22541715 TGATTGAATACTAAAGCAAT-TCGACAATCATTAACTTTTGCACATACTTATTGTCGATTTGTTA
131 TGATTGAATATTGAAGCGATAT-GACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTTA
* *
22541779 GTAAGCAGCCATAACGTTGGGAACATGA-TGACGACCTTGAAAGGTCAATTGGTATTTATGATTA
195 GTGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTA
* *
22541843 GCATACGTTGGGAACATACGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCTACTTTTGCATT
260 GCATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCTACTTTTACATT
* * *
22541908 AATAAATGCGATACATGTTTCCATATGATTGATTATAGAAGCGATGTGACAATCATTAAATTTTC
325 AATAAATGTGATACATGTTTCCATATGATTGAATAT-GAAGCGATGTGACAATCATTAACTTTTC
** * ** * *
22541973 CTTGTATTTATTTTCGATTTGTTAGTGAATGGTCAGAACGTTGGGAACATGAGTAACCACCTTGA
389 CTCATATTTATTGTCGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTAACAACCTTGA
* * * *
22542038 AAGTTAATTGGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTAACAAGCGTTCTGATTTT
454 AAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAACAAGCGTTCTGATTTT
* ** * * ** *
22542103 TTGGGATTTGTAACTTTTGCGTTAATAAATGTGATGCACATTTTCATGTGATTGAGTATTGAATC
519 TAGGGATTTACAACTTTTGCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAGC
* * * *
22542168 GATATAG-CAATCATTAACTTTTCCTCACATTTATTGTTGATTTGCTAGTGACCGTCATAACGTT
584 GACA-AGACAATCATTAACTTTTCCTCACATTTATTGTCGATTTGCTAGTGACAGTCATAACATT
*
22542232 GGGAAC
648 AGGAAC
*
22542238 ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAATGTATGTTAGGAACATGTGTGGTA
1 ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
* * *
22542303 ATAAGCATTCTGATTTTCGGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTTCATG
66 ATAAGCTTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCATG
* * * * *
22542368 AGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTATTGATTTGCTAG
131 TGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTTAG
** * * * *
22542433 TGA-CAGTTATAACGTTGGGAACATGAGTGACGACCTTGAAA-GTCAAATAGTACTTATAATTAA
196 TGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAG
* * * * * ** *
22542496 CGTATGTTAGGAACATGTGTGGTAATAAGCATTCTGATTTTCAGGGATTTG-TGACTTTTACATT
261 CATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCT-ACTTTTACATT
* * * *
22542560 AATGAATGTGATACATGTTTCCATGTGATTGAATATTGAAGCGATATGACAATCATTAACTTTTG
325 AATAAATGTGATACATGTTTCCATATGATTGAATA-TGAAGCGATGTGACAATCATTAACTTTTC
* * * * *
22542625 CACATACTTATTATCGGTTTGGTAGTGAACAG
389 CTCATATTTATTGTCGATTTGTTAGTGAACAG
22542657 ACGTAACTCT
Statistics
Matches: 923, Mismatches: 138, Indels: 23
0.85 0.13 0.02
Matches are distributed among these distances:
651 1 0.00
652 306 0.33
653 614 0.67
654 2 0.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (653 bp):
ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
ATAAGCTTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCATG
TGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTTAG
TGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAG
CATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCTACTTTTACATTA
ATAAATGTGATACATGTTTCCATATGATTGAATATGAAGCGATGTGACAATCATTAACTTTTCCT
CATATTTATTGTCGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTAACAACCTTGAAA
GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAACAAGCGTTCTGATTTTTA
GGGATTTACAACTTTTGCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAGCGA
CAAGACAATCATTAACTTTTCCTCACATTTATTGTCGATTTGCTAGTGACAGTCATAACATTAGG
AAC
Found at i:22542621 original size:870 final size:871
Alignment explanation
Indices: 22540932--22542650 Score: 2349
Period size: 870 Copynumber: 2.0 Consensus size: 871
22540922 TTTTAGGGAT
* **
22540932 ATGAGTGACAACCTTGAAAGGTCAACTGGTATTATGATCAACGTACGTTAGGAACATGTGTGGTA
1 ATGAGTGACAACCTTGAAAGGTCAACTGGTATTATGATCAACATACGTTAGGAACATACGTGGTA
* * *
22540997 ATAAGCATTTTGATTTTTTGGTTTTTGTGACTTTTGCATTAATAAAAGTGATACATGTTTCCATG
66 ATAAGCATTTTGATTTTTTGGGTTTTGTGACTTTTGCATTAATAAAAGCGATACATGTTTCCATA
* * * *
22541062 TGATTGAGTATTGAAGCGATATGACAATTATTAACTTTTCCACATATTTATTGTCGGCTTGTTAG
131 TGATTGAGTATAGAAGCGATATGACAATCATTAAATTTTCCACATATTTATTGTCGACTTGTTAG
* * * * * *
22541127 TGAGCAGCCATAACATTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAG
196 TGAACAGCCAGAACATTGGGAACATGAGTAACCACCTTGAAAGGTCAATTGGTACTTATAATTAA
* * * * * *
22541192 CATACGTTGGGAACATGCATGGTAATAAGCGTTTTAATTTTTTGGGTTTTGCGACTTTTTCATGA
261 CATACGTTAGGAACATGCATGGTAACAAGCGTTCTAATTTTTTGGGATTTGCAACTTTTGCATGA
*
22541257 ATAAATGTGATACACGTTTCTAAGTGACTGAGTATGAAGCAATGTGACAATCATTAACTTTTCCT
326 ATAAATGTGATACACGTTTCTAAGTGACTGAGTATGAAGCAATATGACAATCATTAACTTTTCCT
* *
22541322 CATATTTATTGTCGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTGAAA
391 CACATTTATTGTCGATTTGCTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTGAAA
* ** * *
22541387 GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGTGTTTTGATTTTTA
456 GTCAATAGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGCATTCTGATTTTCA
* * *
22541452 GGGATTTACGACTTTTTCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAGCGA
521 GGGATTTACGACTTTTACATTAATAAATGTGATACACATTTTCATGAGACCGAATATTGAAGCGA
* * * *
22541517 CACGACAATTATTAACTTTATCTCGTATTTATTGTCGATTTGCTAGTGATAGTTATAACATTAGG
586 CACGACAATCATTAACTTTATCTCATATTTATTATCGATTTGCTAGTGACAGTTATAACATTAGG
** * *
22541582 AACATGAGTGGTGACTTTGAAAGTCAACTAGTACTTATAATTAACATATGTTAGGAACATGCATG
651 AACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACATATGTTAGGAACATGCATG
*
22541647 GTAATAAACTTTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCC
716 GTAATAAACATTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCC
* *
22541712 ATGTGATTGAATACTAAAGCAATTCGACAATCATTAACTTTTGCACATACTTATTGTCGATTTGT
781 ATGTGATTGAATACTAAAGCAATTCGACAATCATTAACTTTTGCACATACTTATTATCGATTTGG
22541777 TAGTAAGCAGCCATAACGTTGGGAAC
846 TAGTAAGCAGCCATAACGTTGGGAAC
* * * * *
22541803 ATGA-TGACGACCTTGAAAGGTCAATTGGTATTTATGATTAGCATACGTTGGGAACATACGTGGT
1 ATGAGTGACAACCTTGAAAGGTCAACTGGTA-TTATGATCAACATACGTTAGGAACATACGTGGT
*
22541867 AATAAGCATTTTGATTTTTTGGGTTTTGCT-ACTTTTGCATTAATAAATGCGATACATGTTTCCA
65 AATAAGCATTTTGATTTTTTGGGTTTTG-TGACTTTTGCATTAATAAAAGCGATACATGTTTCCA
* * *** * *
22541931 TATGATTGATTATAGAAGCGATGTGACAATCATTAAATTTTCCTTGTATTTATTTTCGATTTGTT
129 TATGATTGAGTATAGAAGCGATATGACAATCATTAAATTTTCCACATATTTATTGTCGACTTGTT
** * * *
22541996 AGTGAATGGTCAGAACGTTGGGAACATGAGTAACCACCTTGAAA-GTTAATTGGTACTTATAATT
194 AGTGAACAGCCAGAACATTGGGAACATGAGTAACCACCTTGAAAGGTCAATTGGTACTTATAATT
* * ** * * *
22542060 AACGTATGTTAGGAACATGTGTGGTAACAAGCGTTCTGATTTTTTGGGATTTGTAACTTTTGCGT
259 AACATACGTTAGGAACATGCATGGTAACAAGCGTTCTAATTTTTTGGGATTTGCAACTTTTGCAT
* * * * * * *
22542125 TAATAAATGTGATGCACATTT-TCATGTGATTGAGTATTGAATCGATAT-AGCAATCATTAACTT
324 GAATAAATGTGATACACGTTTCT-AAGTGACTGAGTA-TGAAGCAATATGA-CAATCATTAACTT
* * * * *
22542188 TTCCTCACATTTATTGTTGATTTGCTAGTG-ACCGTCATAACGTTGGGAACATGAGTGACGACCT
386 TTCCTCACATTTATTGTCGATTTGCTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCT
** *
22542252 TGAAAGTCAACTAG-TACTTATAATTAATGTATGTTAGGAACATGTGTGGTAATAAGCATTCTGA
451 TGAAAGTCAA-TAGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGCATTCTGA
* ** * ** **
22542316 TTTTCGGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTTCATGAGATTGAATATTG
515 TTTTCAGGGATTTACGACTTTTACATTAATAAATGTGATACACATTTTCATGAGACCGAATATTG
* * *
22542381 AAGCGATATGACAATCATTAACTTT-TCCTCATATTTATTATTGATTTGCTAGTGACAGTTATAA
580 AAGCGACACGACAATCATTAACTTTAT-CTCATATTTATTATCGATTTGCTAGTGACAGTTATAA
* * *
22542445 CGTTGGGAACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACGTATGTTAGGAAC
644 CATTAGGAACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACATATGTTAGGAAC
** * *
22542510 ATGTGTGGTAATAAGCATTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACA
709 ATGCATGGTAATAAACATTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACA
* * *
22542575 TGTTTCCATGTGATTGAATATTGAAGCGATAT-GACAATCATTAACTTTTGCACATACTTATTAT
774 TGTTTCCATGTGATTGAATACTAAAGCAAT-TCGACAATCATTAACTTTTGCACATACTTATTAT
*
22542639 CGGTTTGGTAGT
838 CGATTTGGTAGT
22542651 GAACAGACGT
Statistics
Matches: 734, Mismatches: 106, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
869 2 0.00
870 501 0.68
871 230 0.31
872 1 0.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (871 bp):
ATGAGTGACAACCTTGAAAGGTCAACTGGTATTATGATCAACATACGTTAGGAACATACGTGGTA
ATAAGCATTTTGATTTTTTGGGTTTTGTGACTTTTGCATTAATAAAAGCGATACATGTTTCCATA
TGATTGAGTATAGAAGCGATATGACAATCATTAAATTTTCCACATATTTATTGTCGACTTGTTAG
TGAACAGCCAGAACATTGGGAACATGAGTAACCACCTTGAAAGGTCAATTGGTACTTATAATTAA
CATACGTTAGGAACATGCATGGTAACAAGCGTTCTAATTTTTTGGGATTTGCAACTTTTGCATGA
ATAAATGTGATACACGTTTCTAAGTGACTGAGTATGAAGCAATATGACAATCATTAACTTTTCCT
CACATTTATTGTCGATTTGCTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTGAAA
GTCAATAGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGCATTCTGATTTTCA
GGGATTTACGACTTTTACATTAATAAATGTGATACACATTTTCATGAGACCGAATATTGAAGCGA
CACGACAATCATTAACTTTATCTCATATTTATTATCGATTTGCTAGTGACAGTTATAACATTAGG
AACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACATATGTTAGGAACATGCATG
GTAATAAACATTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCC
ATGTGATTGAATACTAAAGCAATTCGACAATCATTAACTTTTGCACATACTTATTATCGATTTGG
TAGTAAGCAGCCATAACGTTGGGAAC
Found at i:22560682 original size:20 final size:21
Alignment explanation
Indices: 22560648--22560686 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22560638 AAATACAATT
22560648 ATAAAAATAAATAAAATTAAG
1 ATAAAAATAAATAAAATTAAG
*
22560669 ATAAAAAT-ATTAAAATTA
1 ATAAAAATAAATAAAATTA
22560687 TGTACTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (21 bp):
ATAAAAATAAATAAAATTAAG
Found at i:22562998 original size:19 final size:19
Alignment explanation
Indices: 22562961--22563049 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
22562951 GTAAGAGAAA
* *
22562961 ACTAGCAAATATAGTGCAT
1 ACTAGCACATAAAGTGCAT
*
22562980 ACTAGCACATAAAGCGCAT
1 ACTAGCACATAAAGTGCAT
*
22562999 CCTAGTGCACA-AAA-TGCAT
1 ACTA--GCACATAAAGTGCAT
**
22563018 ACTAGCACACGAAGTGCAT
1 ACTAGCACATAAAGTGCAT
22563037 ACT-GACACATAAA
1 ACTAG-CACATAAA
22563050 ACGCATCCTG
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
17 5 0.09
18 3 0.05
19 40 0.71
20 3 0.05
21 5 0.09
ACGTcount: A:0.42, C:0.24, G:0.16, T:0.19
Consensus pattern (19 bp):
ACTAGCACATAAAGTGCAT
Found at i:22564684 original size:3 final size:3
Alignment explanation
Indices: 22564678--22564707 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22564668 AGTAGTAGAC
22564678 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
22564708 AGCTTGATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22566430 original size:18 final size:18
Alignment explanation
Indices: 22566395--22566438 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
22566385 ATTTTAATTT
* *
22566395 TGAAAGTAAGAATAAAAA
1 TGAAAATAACAATAAAAA
*
22566413 TGAAAATAACAATTAAAA
1 TGAAAATAACAATAAAAA
*
22566431 TAAAAATA
1 TGAAAATA
22566439 TTAAAAGTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (18 bp):
TGAAAATAACAATAAAAA
Found at i:22567009 original size:14 final size:14
Alignment explanation
Indices: 22566990--22567029 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
22566980 TTGATTGGCA
22566990 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
22567004 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
22567018 GGAAAATGTTTT
1 GTAAAATGTTTT
22567030 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:22567038 original size:20 final size:20
Alignment explanation
Indices: 22567013--22567052 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22567003 CGTAAAATGA
*
22567013 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
22567033 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
22567053 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:22567042 original size:34 final size:35
Alignment explanation
Indices: 22566998--22567064 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
22566988 CAGTAAAATG
*
22566998 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
22567032 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
22567065 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:22567068 original size:14 final size:15
Alignment explanation
Indices: 22566992--22567068 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
22566982 GATTGGCAGT
* *
22566992 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
22567006 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
22567020 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
22567040 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
22567055 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
22567069 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:22567176 original size:20 final size:20
Alignment explanation
Indices: 22567151--22567189 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
22567141 GTTTTTACAT
22567151 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
22567171 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
22567190 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:22567249 original size:15 final size:15
Alignment explanation
Indices: 22567220--22567272 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 15
22567210 TATTGCAATG
*
22567220 ATTTATTTATAAATAA
1 ATTT-TTTATTAATAA
22567236 ATTTTTTATTAATAAA
1 ATTTTTTATTAAT-AA
22567252 AGTTTTTTATCTAATTAA
1 A-TTTTTTAT-TAA-TAA
22567270 ATT
1 ATT
22567273 CCAAATGTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 8 0.25
16 7 0.22
17 10 0.31
18 6 0.19
19 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTTTTATTAATAA
Found at i:22569957 original size:11 final size:11
Alignment explanation
Indices: 22569941--22569966 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22569931 AACCATCTGT
22569941 ATATAACCAAA
1 ATATAACCAAA
22569952 ATATAACCAAA
1 ATATAACCAAA
22569963 ATAT
1 ATAT
22569967 CATCCAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (11 bp):
ATATAACCAAA
Found at i:22570202 original size:25 final size:25
Alignment explanation
Indices: 22570154--22570203 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
22570144 AGAAGATAAG
22570154 ATGAAGAACAGAAGAAGAAAAAGGA
1 ATGAAGAACAGAAGAAGAAAAAGGA
* *
22570179 ATGAAGAACGGAAGAAGAAGAAGGA
1 ATGAAGAACAGAAGAAGAAAAAGGA
22570204 GCCTTACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.60, C:0.04, G:0.32, T:0.04
Consensus pattern (25 bp):
ATGAAGAACAGAAGAAGAAAAAGGA
Found at i:22570270 original size:6 final size:6
Alignment explanation
Indices: 22570246--22570289 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
22570236 GTTGCAATCC
* *
22570246 AAGGGG AAGGGA AAAGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
22570290 GAAGAAGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:22571541 original size:37 final size:38
Alignment explanation
Indices: 22571460--22571550 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 38
22571450 TGGATGGAAG
* **
22571460 TAAA-TTTTAAAAGTT-AAATTTTTGAAAAATTAAATT
1 TAAATTTTTGAAAGTTAAAATTTTTGAAAAACAAAATT
* * *
22571496 TGATTTTTTTAAA-TTAAAATTTTTGAAAAACAAAATT
1 TAAATTTTTGAAAGTTAAAATTTTTGAAAAACAAAATT
22571533 TAAATTTTTGAAAGTTAA
1 TAAATTTTTGAAAGTTAA
22571551 GGAACTTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
36 4 0.09
37 36 0.82
38 4 0.09
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.45
Consensus pattern (38 bp):
TAAATTTTTGAAAGTTAAAATTTTTGAAAAACAAAATT
Found at i:22571878 original size:37 final size:37
Alignment explanation
Indices: 22571836--22571907 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
22571826 CTGAGAATCG
*
22571836 TTACTGTTCATCTCCATTTTTTATTTGCAGAGAATTT
1 TTACTGTTCATCTCCATTTTTTATTTGCAAAGAATTT
* ** *
22571873 TTACTGTTTATCTCTGTTTTTTCTTTGCAAAGAAT
1 TTACTGTTCATCTCCATTTTTTATTTGCAAAGAAT
22571908 CACTCATGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (37 bp):
TTACTGTTCATCTCCATTTTTTATTTGCAAAGAATTT
Found at i:22571923 original size:37 final size:37
Alignment explanation
Indices: 22571877--22572023 Score: 159
Period size: 37 Copynumber: 4.0 Consensus size: 37
22571867 GAATTTTTAC
* * * *
22571877 TGTTTATCTCTGTTTTTTCTTTGCAAAGAATCACTCA
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
* * *
22571914 TGTTCATCTCAGTCTTTTCTTTGTAGAGAATCTCTCT
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
* * * * *
22571951 TGTTCATCTTTATCTTTTCTTTATAGGGAATCACTCC
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
* * *
22571988 TGTTCATATCTGTCTTTGCTTTGTAGGGAATCACTC
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTC
22572024 TTGCTTATCT
Statistics
Matches: 91, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (37 bp):
TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
Found at i:22572041 original size:37 final size:37
Alignment explanation
Indices: 22571904--22572055 Score: 157
Period size: 37 Copynumber: 4.1 Consensus size: 37
22571894 TCTTTGCAAA
* *
22571904 GAATCACTCATGTTCATC-TCAGTCTTTTCTTTGTAGA
1 GAATCACTCTTGTTCATCTTCA-TCTTTTCTTTGTAGG
* * *
22571941 GAATCTCTCTTGTTCATCTTTATCTTTTCTTTATAGG
1 GAATCACTCTTGTTCATCTTCATCTTTTCTTTGTAGG
* * * *
22571978 GAATCACTCCTGTTCAT-ATCTGTCTTTGCTTTGTAGG
1 GAATCACTCTTGTTCATCTTC-ATCTTTTCTTTGTAGG
* *
22572015 GAATCACTCTTGCTT-ATCTTCATCTTTACTTTGCAGG
1 GAATCACTCTTG-TTCATCTTCATCTTTTCTTTGTAGG
22572052 GAAT
1 GAAT
22572056 ATTTGAAGGT
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
36 1 0.01
37 87 0.93
38 6 0.06
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.45
Consensus pattern (37 bp):
GAATCACTCTTGTTCATCTTCATCTTTTCTTTGTAGG
Found at i:22572053 original size:74 final size:74
Alignment explanation
Indices: 22571895--22572055 Score: 198
Period size: 74 Copynumber: 2.2 Consensus size: 74
22571885 TCTGTTTTTT
** * * *
22571895 CTTTGCAAAGAATCACTCATGTTCATCTCAGTCTTTTCTTTGTAGAGAATCTCTCTTGTTCATCT
1 CTTTGCAGGGAATCACTCATGTTCATATCAGTCTTTGCTTTGTAGAGAATCACTCTTGTTCATCT
* *
22571960 TTATCTTTT
66 TCATCTTTA
** * * *
22571969 CTTTATAGGGAATCACTCCTGTTCATATCTGTCTTTGCTTTGTAGGGAATCACTCTTGCTT-ATC
1 CTTTGCAGGGAATCACTCATGTTCATATCAGTCTTTGCTTTGTAGAGAATCACTCTTG-TTCATC
22572033 TTCATCTTTA
65 TTCATCTTTA
22572043 CTTTGCAGGGAAT
1 CTTTGCAGGGAAT
22572056 ATTTGAAGGT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
74 70 0.97
75 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (74 bp):
CTTTGCAGGGAATCACTCATGTTCATATCAGTCTTTGCTTTGTAGAGAATCACTCTTGTTCATCT
TCATCTTTA
Found at i:22574878 original size:5 final size:5
Alignment explanation
Indices: 22574870--22574926 Score: 87
Period size: 5 Copynumber: 11.4 Consensus size: 5
22574860 TAATTTATTA
* * *
22574870 CATAT CATAT CATAT TAGAT CATAT CATAT CATAT CATAT CATAT CGTAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
22574920 CATAT CA
1 CATAT CA
22574927 GGTTATATTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39
Consensus pattern (5 bp):
CATAT
Found at i:22574939 original size:20 final size:20
Alignment explanation
Indices: 22574870--22574946 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 20
22574860 TAATTTATTA
* *
22574870 CATATCATATCATATTAGAT
1 CATATCGTATCATATCAGAT
* *
22574890 CATATCATATCATATCATAT
1 CATATCGTATCATATCAGAT
*
22574910 CATATCGTATCATATCAGGT
1 CATATCGTATCATATCAGAT
* * *
22574930 TATATTGTATTATATCA
1 CATATCGTATCATATCA
22574947 TATCCTACCC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.36, C:0.16, G:0.06, T:0.42
Consensus pattern (20 bp):
CATATCGTATCATATCAGAT
Found at i:22576437 original size:3 final size:3
Alignment explanation
Indices: 22576423--22576494 Score: 135
Period size: 3 Copynumber: 24.0 Consensus size: 3
22576413 ATGGATGTAT
*
22576423 ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22576471 ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
22576495 GTGGATCATG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:22576537 original size:13 final size:13
Alignment explanation
Indices: 22576515--22576548 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
22576505 CAAATTAAAC
22576515 AAAGAAAAGAAAAG
1 AAAGAAAAG-AAAG
22576529 AAA-AAAAGAAAG
1 AAAGAAAAGAAAG
22576541 AAAGAAAA
1 AAAGAAAA
22576549 TGAGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.37
13 9 0.47
14 3 0.16
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAG
Found at i:22583517 original size:21 final size:21
Alignment explanation
Indices: 22583493--22583548 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
22583483 CATCATTGTT
*
22583493 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
22583514 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
22583535 ACTAATCTCACCGC
1 TCTAATCTCACCGC
22583549 CACCGCTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:22587254 original size:17 final size:17
Alignment explanation
Indices: 22587232--22587265 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22587222 AATTGGATCA
22587232 ATAGTTGTACAATTACT
1 ATAGTTGTACAATTACT
*
22587249 ATAGTTGTACGATTACT
1 ATAGTTGTACAATTACT
22587266 GTGACAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (17 bp):
ATAGTTGTACAATTACT
Found at i:22588254 original size:41 final size:41
Alignment explanation
Indices: 22588192--22588279 Score: 133
Period size: 41 Copynumber: 2.1 Consensus size: 41
22588182 ACATGGACCG
*
22588192 ATTCAATTGGATCAATGATTGTACAATTAAT-TATACAATTT
1 ATTCAATTGGATCAATGATTGTACAATTAATGT-CACAATTT
* *
22588233 ATTCAATTGGATCAGTTATTGTACAATTAATGTCACAATTT
1 ATTCAATTGGATCAATGATTGTACAATTAATGTCACAATTT
22588274 ATTCAA
1 ATTCAA
22588280 CTATGCTAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 42 0.98
42 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (41 bp):
ATTCAATTGGATCAATGATTGTACAATTAATGTCACAATTT
Found at i:22588387 original size:500 final size:500
Alignment explanation
Indices: 22587287--22589073 Score: 2269
Period size: 500 Copynumber: 3.6 Consensus size: 500
22587277 TTTGATTGCA
* * *
22587287 CTAGTATTTAGAGGAATATACAATGGATCAATACCTTTAAAAATACTTATACACTACAATGTCAT
1 CTAGTAATTAGAGGAATATACAATTGATCAATACTTTTAAAAATACTTATACACTACAATGTCAT
* * * * * *
22587352 TAACTTCATAAATAGATTCATTCAATTAGAA-CAATGATTGTACATTTAATATCATAA--C-TTA
66 TACCTTTATACATAGATTCATTCAATTA-AATCAATAATTGTACAATTAATATCATAACTCATTC
* * * * * ** *
22587413 AACTACGTTAAAAATTAGAAAAATGTAAAATTGAT-TATTACTCTTCAAGCTACTTGTACATCAC
130 AACTACGTTAATAATTAGAGAAATGTAAAATTGATCAATGACTTTTCAAATTACTTGTACACCAC
* *
22587477 AATGTTAGTACATTCATACATAGATCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACAT
195 AATGTTAGTACATTCGTATATAGATCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACAT
* * * * * *
22587542 TTGTAGTT--AGGAGTGCATAATTGATAAATACTCTTAAATTGATGAAAAACTTAAAATTAAACA
260 TAGTAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAACA
* * * *
22587605 TCGATGGTCCAAAATTTTGATATATTTCACTATATGATCA-TGAATTCCAAA-ATGTATACTCAA
325 TAGGTGGTCCAAAGTTTTGATATATTTCACTATATGAT-ATTGAATTCTAAACATGTATACTCAA
* * * * * * *
22587668 TGTTGTGTTTGCATAGACCAATTTAATTGGATCAATCATTGTATGATTAATTATATAGTTTATTC
389 TGTAGTGTTTACATGGACCAATTCAATTGGATCAATGATTGTATGATTAATTATACAATTTATTC
* * * * *
22587733 AATTAGATCAATGGTTGTGCGATTAATGTCACAATTCATTCGATTATG
454 AATTGGATC-ATGATTGTACAATTAATGTCACAATTTATTCGATTATG
* *
22587781 CTAGCTAATAATTAGAGGAATATACAATTGATCAATACTCTTAAAAATACCTATACACTACAATG
1 CTAG----TAATTAGAGGAATATACAATTGATCAATACTTTTAAAAATACTTATACACTACAATG
* * * * *
22587846 GCATTA-TTTTCATACATAGATTCATTCAATTAAATCAATAATTATACAATTATTGTCATAACTC
62 TCATTACCTTT-ATACATAGATTCATTCAATTAAATCAATAATTGTACAATTAATATCATAACTC
* * * **
22587910 ATTCAACTACATTGGA-AATTAGAGAAATGTAAAAGTGATC-ATGACTTTTCAAATTACTCATAC
126 ATTCAACTACGTT-AATAATTAGAGAAATGTAAAATTGATCAATGACTTTTCAAATTACTTGTAC
* * * *
22587973 ACCACAATGTTAGTACATTTGTATATAGA-CCTGATTCAATTAGTTCAATGTCATTATCATTCAA
190 ACCACAATGTTAGTACATTCGTATATAGATCC-GATTCAATTGGTTCAATGTCATAAGCATTCAA
* *
22588037 TTACATAAGTAGTTAGAGGAATGCATAAGTGATAAATACTCTTAAATTGATCAAATATTTGAAAT
254 TTACATTAGTAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAAT
* * *
22588102 TAAACATTGGTAGTCCAAAGTTTTGATATATTTCACTATATGATATTGCATTCTAAACATGTATA
319 TAAACATAGGTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATA
* * * **
22588167 ATCAAAGTAGTGTTTACATGGACCGATTCAATTGGATCAATGATTGTACAATTAATTATACAATT
384 CTCAATGTAGTGTTTACATGGACCAATTCAATTGGATCAATGATTGTATGATTAATTATACAATT
* * *
22588232 TATTCAATTGGATCAGTTATTGTACAATTAATGTCACAATTTATTCAACTATG
449 TATTCAATTGGATCA-TGATTGTACAATTAATGTCACAATTTATTCGATTATG
* * *
22588285 CTAGTAATTAGAGGAATATACAATTGATCAATACTTTTAAAAATATTTATACACTACAACGTTAT
1 CTAGTAATTAGAGGAATATACAATTGATCAATACTTTTAAAAATACTTATACACTACAATGTCAT
* *
22588350 TACCTTTATACTTAGATTCATTCGATTAAATCAATAATTGTACAATTAATGA-CATAACTCATTC
66 TACCTTTATACATAGATTCATTCAATTAAATCAATAATTGTACAATTAAT-ATCATAACTCATTC
* * * ** ** * *
22588414 AATTACGTTAATAATTAAAGAAACGTGCAATCCATCAATG-CTTTTTAAATTACTTGTATACCAC
130 AACTACGTTAATAATTAGAGAAATGTAAAATTGATCAATGACTTTTCAAATTACTTGTACACCAC
* *
22588478 AATGTTAGTACATTCGTATATAGA-CCTGATTCAATTGGCTCAATGTCATAATCATTCAATTACA
195 AATGTTAGTACATTCGTATATAGATCC-GATTCAATTGGTTCAATGTCATAAGCATTCAATTACA
* * * *
22588542 TTAGTATTTAGAGGAATGCATAATTAATAAATACCCTTAAATTGATCAAATATTTGAAGTTAAAC
259 TTAGTAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAAC
*
22588607 ATAGGTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTTAA
324 ATAGGTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAA
**
22588672 TGTTA-TGTTTACATGGACCAATTCAATTACATCAATGATTGTATGATTAATTATACAATTTATT
389 TG-TAGTGTTTACATGGACCAATTCAATTGGATCAATGATTGTATGATTAATTATACAATTTATT
* **
22588736 CAATTGGATCTATGATTGTACAATTAATGTCACAATTTATTTGATTACA
453 CAATTGGATC-ATGATTGTACAATTAATGTCACAATTTATTCGATTATG
* * * * *
22588785 CTAGTAATTAGTGGAATAGACAATTGATCAATACTTTTAAAAATATTTATGCACTACAATGTTAT
1 CTAGTAATTAGAGGAATATACAATTGATCAATACTTTTAAAAATACTTATACACTACAATGTCAT
* ** *
22588850 TACCTTTATACATAGATTCATTCAATTAGATCAAGGATTGTACAATTAATATCATAACTCATGCA
66 TACCTTTATACATAGATTCATTCAATTAAATCAATAATTGTACAATTAATATCATAACTCATTCA
* * * * ** *
22588915 ATTATGTTAATAATTAGAGAAATGTACAATTGGTCAAT-ACTTTTTGAATTACTTGTACACCATA
131 ACTACGTTAATAATTAGAGAAATGTAAAATTGATCAATGACTTTTCAAATTACTTGTACACCACA
* *
22588979 ATGTTAGTACATTCGTATATAGATCCGATTCAATTGGTTCAATGCCATAAGCATTCAATTACGTT
196 ATGTTAGTACATTCGTATATAGATCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATT
* *
22589044 TGTAGTTAGATGAATGCATAATTGATAAAT
261 AGTAGTTAGAGGAATGCATAATTGATAAAT
22589074 TGTGAAGCCC
Statistics
Matches: 1120, Mismatches: 147, Indels: 46
0.85 0.11 0.04
Matches are distributed among these distances:
494 4 0.00
497 4 0.00
498 98 0.09
499 2 0.00
500 685 0.61
501 125 0.11
502 2 0.00
503 93 0.08
504 107 0.10
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (500 bp):
CTAGTAATTAGAGGAATATACAATTGATCAATACTTTTAAAAATACTTATACACTACAATGTCAT
TACCTTTATACATAGATTCATTCAATTAAATCAATAATTGTACAATTAATATCATAACTCATTCA
ACTACGTTAATAATTAGAGAAATGTAAAATTGATCAATGACTTTTCAAATTACTTGTACACCACA
ATGTTAGTACATTCGTATATAGATCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATT
AGTAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAACAT
AGGTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAATG
TAGTGTTTACATGGACCAATTCAATTGGATCAATGATTGTATGATTAATTATACAATTTATTCAA
TTGGATCATGATTGTACAATTAATGTCACAATTTATTCGATTATG
Found at i:22588762 original size:41 final size:41
Alignment explanation
Indices: 22588692--22588776 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 41
22588682 ACATGGACCA
** *
22588692 ATTCAATTACATCAATGATTGTATGATTAAT-TATACAATTT
1 ATTCAATTACATCAATGATTGTACAATTAATGT-CACAATTT
** *
22588733 ATTCAATTGGATCTATGATTGTACAATTAATGTCACAATTT
1 ATTCAATTACATCAATGATTGTACAATTAATGTCACAATTT
22588774 ATT
1 ATT
22588777 TGATTACACT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 36 0.97
42 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (41 bp):
ATTCAATTACATCAATGATTGTACAATTAATGTCACAATTT
Found at i:22594440 original size:13 final size:15
Alignment explanation
Indices: 22594413--22594446 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
22594403 CTTTGTTATG
22594413 TTTTTCTTATCAATT
1 TTTTTCTTATCAATT
22594428 TTTTTCTT-T-AATT
1 TTTTTCTTATCAATT
22594441 TTTTTC
1 TTTTTC
22594447 CCTATGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 1 0.05
15 8 0.42
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTCTTATCAATT
Found at i:22595843 original size:5 final size:5
Alignment explanation
Indices: 22595827--22595856 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
22595817 AATACTTTCA
22595827 TAAAT ATAAAT TAAAT TAAAT TAAAT TAAA
1 TAAAT -TAAAT TAAAT TAAAT TAAAT TAAA
22595857 GACAAGGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAAAT
Found at i:22595991 original size:16 final size:17
Alignment explanation
Indices: 22595970--22596005 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
22595960 GACTTTTATT
*
22595970 TATTTATTATAT-TTAA
1 TATTTAATATATATTAA
22595986 TATTTAATATATATTAA
1 TATTTAATATATATTAA
22596003 TAT
1 TAT
22596006 ACTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTTAATATATATTAA
Found at i:22596566 original size:49 final size:49
Alignment explanation
Indices: 22596493--22596586 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
22596483 TGCTATGCAA
* * *
22596493 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTATACAT
1 TGCTAAAATTAGTCGTCCACTGTCTACACTCTTATCACTATTTATACAT
*
22596542 TGCTAAAATTAGTCGTCTACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAAATTAGTCGTCCACTGTCTACACTCTTATCACTATTTAT
22596587 CCCTTCTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (49 bp):
TGCTAAAATTAGTCGTCCACTGTCTACACTCTTATCACTATTTATACAT
Found at i:22596937 original size:43 final size:43
Alignment explanation
Indices: 22596876--22596965 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
22596866 GTACAAGGGT
* *
22596876 CACACGCCTATGTGGCCAGGCTA-TGTG-CTTCACACAACTGAGA
1 CACACACCCATGTGGCCAGG-TAGTGTGTC-TCACACAACTGAGA
**
22596919 CACACACCCATGTGGCCAGGTAGTGTGTCTCACACGGCTGAGA
1 CACACACCCATGTGGCCAGGTAGTGTGTCTCACACAACTGAGA
22596962 CACA
1 CACA
22596966 TTCCTATGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 2 0.05
43 38 0.93
44 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (43 bp):
CACACACCCATGTGGCCAGGTAGTGTGTCTCACACAACTGAGA
Found at i:22598045 original size:44 final size:44
Alignment explanation
Indices: 22597996--22598082 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
22597986 TCATATTTCA
*
22597996 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATATT
1 TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATATT
* * *
22598040 TTTCTCATATCGTATTCATTTCTCATATTTTCCATTTCAATAT
1 TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
22598083 CAATCATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.24, C:0.22, G:0.02, T:0.52
Consensus pattern (44 bp):
TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATATT
Found at i:22604462 original size:18 final size:18
Alignment explanation
Indices: 22604428--22604474 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
22604418 ATAAGAATAT
22604428 TTAATATTA-ATAATTTTA
1 TTAA-ATTATATAATTTTA
*
22604446 TTAAATTATATATTTTTA
1 TTAAATTATATAATTTTA
22604464 TTAAATTATAT
1 TTAAATTATAT
22604475 TTAATAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAAATTATATAATTTTA
Found at i:22604483 original size:120 final size:120
Alignment explanation
Indices: 22604333--22604733 Score: 655
Period size: 120 Copynumber: 3.4 Consensus size: 120
22604323 TAATTGAAAA
*
22604333 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATA
*
22604397 TTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAATAATTTTATTAAAT
66 TTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
* *
22604452 TATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATA-TTTATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATA
*
22604516 TTATGATTTTAGAAAATTCATAGAAGAATATTTAATATTAAGAATTTTATTAAAT
66 TTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
* * *
22604571 CATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTATCATAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTATTATAT
* * * *
22604635 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
65 ATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
*
22604691 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAAA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
22604734 ATATGATTAA
Statistics
Matches: 264, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
118 2 0.01
119 120 0.45
120 140 0.53
121 2 0.01
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATA
TTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
Found at i:22604707 original size:18 final size:17
Alignment explanation
Indices: 22604679--22604713 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22604669 ATTATTAAGA
*
22604679 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
22604696 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
22604714 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:22613005 original size:169 final size:169
Alignment explanation
Indices: 22612718--22613034 Score: 436
Period size: 169 Copynumber: 1.9 Consensus size: 169
22612708 TCGATTAATA
* * *
22612718 GGTCCAATTCAAACAACATTGGGTTGCGGTGTTATGGTTACAAATACTATGGACGTTACATAACA
1 GGTCCAATTCAAACAACATTGGGTTGCGGTGTTATAGTTACAAATACGATGGACATTACATAACA
* * * * *
22612783 CATAACGGTTGCCACAGATGTGATTTTTTTCTTTTCGAACATCATATTTTTTTAAAACACTATAT
66 CATAACGGTTGCCACAAACGTGATTTTTTTCTTTTCGAAAATCACAATTTTTTAAAACACTATAT
*
22612848 TTATCCCTTTTGTTGTTGGTTCAACCGGTCCGATCGATC
131 TTATACCTTTTGTTGTTGGTTCAACCGGTCCGATCGATC
* * * * ** * * **
22612887 GGTCCGATTCAAACAACATTGGGTTGTGGTGTTGTAGTTGCGGATACGGTGGACATTACGTAATG
1 GGTCCAATTCAAACAACATTGGGTTGCGGTGTTATAGTTACAAATACGATGGACATTACATAACA
* * *
22612952 CATAAGGGTTGTCGCAAACGTGATTTTTTTCTTTTCGAAAATCACAATTTTTTAAAACACTATAT
66 CATAACGGTTGCCACAAACGTGATTTTTTTCTTTTCGAAAATCACAATTTTTTAAAACACTATAT
22613017 TTATACCTTTTGTTGTTG
131 TTATACCTTTTGTTGTTG
22613035 TATTTTATTA
Statistics
Matches: 126, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
169 126 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (169 bp):
GGTCCAATTCAAACAACATTGGGTTGCGGTGTTATAGTTACAAATACGATGGACATTACATAACA
CATAACGGTTGCCACAAACGTGATTTTTTTCTTTTCGAAAATCACAATTTTTTAAAACACTATAT
TTATACCTTTTGTTGTTGGTTCAACCGGTCCGATCGATC
Found at i:22615046 original size:25 final size:25
Alignment explanation
Indices: 22614960--22615043 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
22614950 TGAGCCCTTT
22614960 TCCAATTGGTTTTCGTCATTTCTAG
1 TCCAATTGGTTTTCGTCATTTCTAG
** *
22614985 TCCAATTAATTTTCGTCA--TCGAG
1 TCCAATTGGTTTTCGTCATTTCTAG
* **
22615008 T-TAA-TGGTTTTTTTCATTTCTAG
1 TCCAATTGGTTTTCGTCATTTCTAG
22615031 TCCAATTGGTTTT
1 TCCAATTGGTTTT
22615044 TTTTTCTGCA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
21 8 0.18
22 2 0.04
23 10 0.22
24 2 0.04
25 23 0.51
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (25 bp):
TCCAATTGGTTTTCGTCATTTCTAG
Found at i:22616816 original size:20 final size:20
Alignment explanation
Indices: 22616788--22616826 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
22616778 AATAATTTAT
*
22616788 TTCATATAAAACCAAAATAC
1 TTCAAATAAAACCAAAATAC
22616808 TTCAAATAAAACCAAAATA
1 TTCAAATAAAACCAAAATA
22616827 GATAGAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.18, G:0.00, T:0.23
Consensus pattern (20 bp):
TTCAAATAAAACCAAAATAC
Found at i:22617317 original size:22 final size:22
Alignment explanation
Indices: 22617291--22617357 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
22617281 TGCACTATTG
*
22617291 AACAAAGAGCACTAAAGTGCTA
1 AACAAAGAGCACTAATGTGCTA
*
22617313 TACAAAGAGCA-TGAATGTGCTA
1 AACAAAGAGCACT-AATGTGCTA
**
22617335 AACGGAGAGCACTAATGTGCTA
1 AACAAAGAGCACTAATGTGCTA
22617357 A
1 A
22617358 TAATCAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.18
Consensus pattern (22 bp):
AACAAAGAGCACTAATGTGCTA
Found at i:22635536 original size:18 final size:18
Alignment explanation
Indices: 22635513--22635550 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22635503 CTCTCCTTCC
22635513 TTAATTCAATTTATTATT
1 TTAATTCAATTTATTATT
*
22635531 TTAATTCAATTTATTCTT
1 TTAATTCAATTTATTATT
22635549 TT
1 TT
22635551 TTAATTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (18 bp):
TTAATTCAATTTATTATT
Found at i:22637213 original size:29 final size:30
Alignment explanation
Indices: 22637170--22637228 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
22637160 GAATTGGATC
* * *
22637170 AAATCAAAATTTTATGTATACAATTGCACA
1 AAATCAAAAGTTTATATATACAATTACACA
22637200 AAATC-AAAGTTTATATATACAATTACACA
1 AAATCAAAAGTTTATATATACAATTACACA
22637229 TTAAAGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (30 bp):
AAATCAAAAGTTTATATATACAATTACACA
Found at i:22638476 original size:19 final size:19
Alignment explanation
Indices: 22638431--22638488 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
22638421 ATCACTTATA
22638431 ATAAT-TAATTAAAAATAAT
1 ATAATATAA-TAAAAATAAT
*
22638450 ATAGTATAACTAAAAA-AAT
1 ATAATATAA-TAAAAATAAT
*
22638469 GTAATATAATAAAAATAAT
1 ATAATATAATAAAAATAAT
22638488 A
1 A
22638489 AATTTCTCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 6 0.19
19 17 0.53
20 9 0.28
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAATATAATAAAAATAAT
Found at i:22639881 original size:242 final size:242
Alignment explanation
Indices: 22639455--22639912 Score: 677
Period size: 242 Copynumber: 1.9 Consensus size: 242
22639445 ATGTTGGTAG
* *
22639455 AAAGAAAATCAAGGTGAAAATCAAGGGATGATAGGAGATTTGGTATCGAAATTCAAGGGGTTGGA
1 AAAGAAAATCAAGGCGAAAATCAAGGGATGATAAGAGATTTGGTATCGAAATTCAAGGGGTTGGA
* * ** * * *
22639520 TCTTCTGGATCCCGTTTCAATATATTGGCTGATGGAAATAAGGGAAGGAATGATACTGTGGGGAT
66 TCTTCTAGATCCCGTTTCAATATATTGGCTAATAAAAATAAAGAAAGGAATGATAATGTGGGGAT
* * *
22639585 TGGGGAAATCAGTAAAGGGCAGTCGAAGTGAGTTCTAAATGGTAATAAAAGTGAAGCTATTAATT
131 TAGGGAAATCAGTAAAGGGCAGTCGAAGGGACTTCTAAATGGTAATAAAAGTGAAGCTATTAATT
*
22639650 TTAGTAAAAATTCAGGATTGGGTGAGAGCGCAATAGTTGTTTCCAAC
196 TGAGTAAAAATTCAGGATTGGGTGAGAGCGCAATAGTTGTTTCCAAC
* * * *
22639697 AAAGAAAATCAAGGCGGAAATCGAGGGATGATAA-AGGATTTGGTGTTGAAATTCAAGGGGTTGG
1 AAAGAAAATCAAGGCGAAAATCAAGGGATGATAAGA-GATTTGGTATCGAAATTCAAGGGGTTGG
* *
22639761 ATCTTCTAGATCTCGTTTCAATATTTTGGCTAATAAAAATAAAGAAAGGAATGATAATGTGGGGA
65 ATCTTCTAGATCCCGTTTCAATATATTGGCTAATAAAAATAAAGAAAGGAATGATAATGTGGGGA
* * *
22639826 TTAGGGAAATTAGT-AAGGAGCAGTCGAAGGGACTTTTAAATGGTAATAGAAGTGAAGCTATTAA
130 TTAGGGAAATCAGTAAAGG-GCAGTCGAAGGGACTTCTAAATGGTAATAAAAGTGAAGCTATTAA
*
22639890 TTTGAGTAAAAATTCAGGGTTGG
194 TTTGAGTAAAAATTCAGGATTGG
22639913 ATAAGATGGT
Statistics
Matches: 191, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
241 5 0.03
242 186 0.97
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (242 bp):
AAAGAAAATCAAGGCGAAAATCAAGGGATGATAAGAGATTTGGTATCGAAATTCAAGGGGTTGGA
TCTTCTAGATCCCGTTTCAATATATTGGCTAATAAAAATAAAGAAAGGAATGATAATGTGGGGAT
TAGGGAAATCAGTAAAGGGCAGTCGAAGGGACTTCTAAATGGTAATAAAAGTGAAGCTATTAATT
TGAGTAAAAATTCAGGATTGGGTGAGAGCGCAATAGTTGTTTCCAAC
Found at i:22643539 original size:24 final size:24
Alignment explanation
Indices: 22643512--22643578 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
22643502 CTTTTTCCCC
*
22643512 ATTTTCCTATTTATTTTATTTATT
1 ATTTTCATATTTATTTTATTTATT
*
22643536 ATTTT-ATTATTTCA-TTTCTTTATT
1 ATTTTCA-TATTT-ATTTTATTTATT
*
22643560 A-ATTCAT-TTTATTTTATTT
1 ATTTTCATATTTATTTTATTT
22643579 TATTCCTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
21 1 0.03
22 9 0.26
23 3 0.09
24 21 0.60
25 1 0.03
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (24 bp):
ATTTTCATATTTATTTTATTTATT
Found at i:22643557 original size:16 final size:16
Alignment explanation
Indices: 22643538--22643568 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22643528 TATTTATTAT
*
22643538 TTTATTATTTCATTTC
1 TTTATTAATTCATTTC
22643554 TTTATTAATTCATTT
1 TTTATTAATTCATTT
22643569 TATTTTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTAATTCATTTC
Found at i:22645229 original size:20 final size:17
Alignment explanation
Indices: 22645192--22645244 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 17
22645182 TTTAATTTTC
*
22645192 TTTTTTTATGTTTATGT
1 TTTTTTTATTTTTATGT
22645209 TTATTTTTATTTTTAGTTGT
1 TT-TTTTTATTTTTA--TGT
22645229 TTTGTTTTATTTTTAT
1 TTT-TTTTATTTTTAT
22645245 TTTCTTGTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 2 0.06
18 12 0.39
19 1 0.03
20 16 0.52
ACGTcount: A:0.13, C:0.00, G:0.09, T:0.77
Consensus pattern (17 bp):
TTTTTTTATTTTTATGT
Found at i:22645242 original size:6 final size:6
Alignment explanation
Indices: 22645169--22645247 Score: 61
Period size: 6 Copynumber: 12.5 Consensus size: 6
22645159 ATTTTATTTG
* * * * *
22645169 TTTTCT TTTTAAT TTTAAT TTTCTTT TTTTAT GTTTAT GTTTAT TTTTAT
1 TTTTAT TTTT-AT TTTTAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT
22645219 TTTTAGT TGTTT-T GTTTTAT TTTTAT TTT
1 TTTTA-T T-TTTAT -TTTTAT TTTTAT TTT
22645248 CTTGTACTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
6 45 0.75
7 12 0.20
8 3 0.05
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:22650856 original size:64 final size:64
Alignment explanation
Indices: 22650755--22650882 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
22650745 TGAATCTGAG
22650755 TAAGGCTCCATTTATCTGAAAACTGGGTCCACTTGCATACTGATGGTACAGTTAGTTTGAATAC
1 TAAGGCTCCATTTATCTGAAAACTGGGTCCACTTGCATACTGATGGTACAGTTAGTTTGAATAC
22650819 TAAGGCTCCATTTATCTGAAAACTGGGTCCACTTGCATACTGATGGTACAGTTAGTTTGAATAC
1 TAAGGCTCCATTTATCTGAAAACTGGGTCCACTTGCATACTGATGGTACAGTTAGTTTGAATAC
22650883 AGGGGATGCT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (64 bp):
TAAGGCTCCATTTATCTGAAAACTGGGTCCACTTGCATACTGATGGTACAGTTAGTTTGAATAC
Found at i:22651241 original size:18 final size:18
Alignment explanation
Indices: 22651218--22651266 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
22651208 AATTTTTATG
*
22651218 ATTGGGTTGGGATGGATA
1 ATTGGGTTGGGATGAATA
*
22651236 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGATGAATA
* *
22651254 CTTGGGTTTGGAT
1 ATTGGGTTGGGAT
22651267 TGGGTTTAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.02, G:0.41, T:0.39
Consensus pattern (18 bp):
ATTGGGTTGGGATGAATA
Found at i:22653189 original size:18 final size:18
Alignment explanation
Indices: 22653151--22653186 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22653141 TTATTGTTTT
*
22653151 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
22653169 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
22653187 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:22653648 original size:22 final size:22
Alignment explanation
Indices: 22653620--22653671 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
22653610 TATAATGTTA
*
22653620 TTGTGATTTTTCTTGAGTTGAC
1 TTGTGATATTTCTTGAGTTGAC
22653642 TTGTGATATTTCTTGAGTTGAC
1 TTGTGATATTTCTTGAGTTGAC
22653664 TTGTGATA
1 TTGTGATA
22653672 ACATTATCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.17, C:0.08, G:0.23, T:0.52
Consensus pattern (22 bp):
TTGTGATATTTCTTGAGTTGAC
Found at i:22654368 original size:20 final size:20
Alignment explanation
Indices: 22654331--22654368 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22654321 CTTCACTTCA
*
22654331 ATTTAATTTTTGCTATTTAT
1 ATTTAATTTTTGCAATTTAT
22654351 ATTTAATATTTT-CAATTT
1 ATTTAAT-TTTTGCAATTT
22654369 TTTTAAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
ATTTAATTTTTGCAATTTAT
Found at i:22660712 original size:14 final size:13
Alignment explanation
Indices: 22660688--22660725 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
22660678 AAAAATGTAC
22660688 AATATAATTAAAT
1 AATATAATTAAAT
22660701 AATATAAATTAAAT
1 AATAT-AATTAAAT
*
22660715 AATTTAATTAA
1 AATATAATTAA
22660726 CTATTTACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATAATTAAAT
Found at i:22663758 original size:24 final size:24
Alignment explanation
Indices: 22663730--22663781 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
22663720 CCGATTCATA
* * *
22663730 TTTTTGTATTGCTTTTGGATTACT
1 TTTTTCTATTGATTTTGGACTACT
*
22663754 TTTTTCTATTGATTTTGGACTGCT
1 TTTTTCTATTGATTTTGGACTACT
22663778 TTTT
1 TTTT
22663782 CTTTTTTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.10, G:0.15, T:0.63
Consensus pattern (24 bp):
TTTTTCTATTGATTTTGGACTACT
Found at i:22664109 original size:125 final size:126
Alignment explanation
Indices: 22663878--22664132 Score: 359
Period size: 125 Copynumber: 2.0 Consensus size: 126
22663868 GGAGTTGGAT
* * **
22663878 TTTTTTAATTTTACTGTAAGAGAACAATAACGGGAATAGCTGCCCATCATTGCCACAATTGGTCA
1 TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCCATCATTGCCACAATTGGTCA
* * *
22663943 TTACCTATTAAATTGCAACCGCGATCCACCGTTATTGGTGTGGTTCCGCTTC-CATCGCTA
66 TTACCCATTAAATTGCAACCGCGATCCACCGCTATTAGTGTGGTTCCGCTTCACATCGCTA
** * ** *
22664003 TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCTGTTATTGCCGTAATTGGTCG
1 TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCCATCATTGCCACAATTGGTCA
* * *
22664068 TTACCCGTTAAATTGCGACCGCGATCCACCGCTATTAGTGTGGTTCTGCTTCACATCGCTA
66 TTACCCATTAAATTGCAACCGCGATCCACCGCTATTAGTGTGGTTCCGCTTCACATCGCTA
22664129 TTTT
1 TTTT
22664133 CAGCAATAAC
Statistics
Matches: 113, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
125 101 0.89
126 12 0.11
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCCATCATTGCCACAATTGGTCA
TTACCCATTAAATTGCAACCGCGATCCACCGCTATTAGTGTGGTTCCGCTTCACATCGCTA
Found at i:22666174 original size:22 final size:24
Alignment explanation
Indices: 22666149--22666194 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
22666139 ATAATCAAAT
*
22666149 TTTCATAT-AC-ATGTATCATCTA
1 TTTCATATAACTATATATCATCTA
*
22666171 TTTCATTTAACTATATATCATCTA
1 TTTCATATAACTATATATCATCTA
22666195 ATAACCTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 11 0.55
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (24 bp):
TTTCATATAACTATATATCATCTA
Found at i:22666337 original size:25 final size:25
Alignment explanation
Indices: 22666301--22666408 Score: 89
Period size: 24 Copynumber: 4.4 Consensus size: 25
22666291 GTACATGTAT
* * *
22666301 GCTCATATGAGCTATGAATCGGTAT
1 GCTCATACGAGCTATAAATCGGTAA
*
22666326 GCTC-TCACGAGCTGTAAATCGGTAA
1 GCTCAT-ACGAGCTATAAATCGGTAA
* *
22666351 GCTCATACGAGCT-GAAATCGATAA
1 GCTCATACGAGCTATAAATCGGTAA
* * *
22666375 GCTC-TCATGAGCT-GAAATCAGTAA
1 GCTCAT-ACGAGCTATAAATCGGTAA
22666399 GCTCATACGA
1 GCTCATACGA
22666409 CCTGTGGTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
23 1 0.01
24 36 0.52
25 31 0.45
26 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTATAAATCGGTAA
Found at i:22666375 original size:24 final size:24
Alignment explanation
Indices: 22666332--22666408 Score: 95
Period size: 24 Copynumber: 3.2 Consensus size: 24
22666322 GTATGCTCTC
*
22666332 ACGAGCTGTAAATCGGTAAGCTCAT
1 ACGAGCTG-AAATCGATAAGCTCAT
22666357 ACGAGCTGAAATCGATAAGCTC-T
1 ACGAGCTGAAATCGATAAGCTCAT
*
22666380 CATGAGCTGAAATC-AGTAAGCTCAT
1 -ACGAGCTGAAATCGA-TAAGCTCAT
22666405 ACGA
1 ACGA
22666409 CCTGTGGTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
23 2 0.04
24 35 0.76
25 9 0.20
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (24 bp):
ACGAGCTGAAATCGATAAGCTCAT
Found at i:22676394 original size:106 final size:106
Alignment explanation
Indices: 22676204--22676515 Score: 437
Period size: 106 Copynumber: 2.9 Consensus size: 106
22676194 AAAAATAAAT
* * *
22676204 TTTTCAAAATAAGGCAATATTTTACGTTTGGAGAATCGAGGAAACGTGCCCTAACATGTTGGGTG
1 TTTT-AAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTG
*
22676269 TCGATTACTTGTTTAACCAAATAGTCGAATATCCTTTCGAAA
65 TCGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCGAAA
22676311 TTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTGT
22676376 CGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCGAAA
66 CGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCGAAA
*** * ** * * *
22676417 TTTTAAAATAAGGCAATGTTTTGTATTTGGAAATTCG-GGAGAACGTATCCTAACGTGCTGGATT
1 TTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGA-AACGTGCCCTAACGTGTTGGGTG
* * * * *
22676481 TCGATTTCTCGTTCATCCAAATAGCCAAATATCCT
65 TCGATTACTCGTTTAACCAAATAGTCGAATATCCT
22676516 CTTAATTTTC
Statistics
Matches: 186, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
105 3 0.02
106 179 0.96
107 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (106 bp):
TTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTGT
CGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCGAAA
Found at i:22678800 original size:34 final size:35
Alignment explanation
Indices: 22678758--22678843 Score: 140
Period size: 34 Copynumber: 2.5 Consensus size: 35
22678748 TAAAAAAAAC
22678758 TAATTAAATTAGGTTTTAAGGG-TTTTAAATAAAT
1 TAATTAAATTAGGTTTTAAGGGATTTTAAATAAAT
*
22678792 TAATTAAATTAAGTTTT-AGGGATTTTAAATAAAT
1 TAATTAAATTAGGTTTTAAGGGATTTTAAATAAAT
*
22678826 TAATTAAATTAGGGTTTA
1 TAATTAAATTAGGTTTTA
22678844 GATTTTTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
33 4 0.09
34 43 0.91
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (35 bp):
TAATTAAATTAGGTTTTAAGGGATTTTAAATAAAT
Found at i:22678852 original size:34 final size:35
Alignment explanation
Indices: 22678726--22678854 Score: 138
Period size: 34 Copynumber: 3.7 Consensus size: 35
22678716 TTTAAAAAAA
* * * *
22678726 TAAATTAGGGTGTAGAGTTTTTTAAAAAAAACTAAT
1 TAAATTAGGGTTTAGAGGTTTTT-AAATAAATTAAT
* *
22678762 TAAATTAGGTTTTA-AGGGTTTTAAATAAATTAAT
1 TAAATTAGGGTTTAGAGGTTTTTAAATAAATTAAT
* * *
22678796 TAAATTAAGTTTTAG-GGATTTTAAATAAATTAAT
1 TAAATTAGGGTTTAGAGGTTTTTAAATAAATTAAT
*
22678830 TAAATTAGGGTTTAGA-TTTTTTAAA
1 TAAATTAGGGTTTAGAGGTTTTTAAA
22678855 AATAATTTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
34 61 0.77
35 6 0.08
36 12 0.15
ACGTcount: A:0.42, C:0.01, G:0.15, T:0.43
Consensus pattern (35 bp):
TAAATTAGGGTTTAGAGGTTTTTAAATAAATTAAT
Found at i:22682456 original size:18 final size:18
Alignment explanation
Indices: 22682430--22682472 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22682420 GACTGAGAAA
* *
22682430 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
*
22682448 AGGATACATATAATGGCT
1 AGGATACATATAAGGGCT
22682466 AGGATAC
1 AGGATAC
22682473 TCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.26, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:22684273 original size:17 final size:17
Alignment explanation
Indices: 22684251--22684311 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
22684241 ATTGAATCAC
22684251 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
22684268 TACATAAGTCTTTTAATCAC
1 TACATAA---TTAAAAACAT
22684288 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
22684305 TACATAA
1 TACATAA
22684312 GTCTTAAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:22684292 original size:37 final size:37
Alignment explanation
Indices: 22684245--22684316 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
22684235 ACCCGAATTG
22684245 AATCACTACATAATTAAAAACATTACATAAGTCTTTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTT
22684282 AATCACTACATAATTAAAAACATTACATAAGTCTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTT
22684317 AAAATTAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (37 bp):
AATCACTACATAATTAAAAACATTACATAAGTCTTTT
Found at i:22684320 original size:20 final size:20
Alignment explanation
Indices: 22684258--22684320 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
22684248 CACTACATAA
22684258 TTAAAAACATTACATAAGTC
1 TTAAAAACATTACATAAGTC
** * *
22684278 TTTTAATCACTACATAA---
1 TTAAAAACATTACATAAGTC
22684295 TTAAAAACATTACATAAGTC
1 TTAAAAACATTACATAAGTC
22684315 TTAAAA
1 TTAAAA
22684321 TTAACACATA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 13 0.41
20 19 0.59
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.33
Consensus pattern (20 bp):
TTAAAAACATTACATAAGTC
Found at i:22684330 original size:37 final size:37
Alignment explanation
Indices: 22684249--22684333 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 37
22684239 GAATTGAATC
** *
22684249 ACTACATAATTAAAAACATTACATAAGTCTTTTAATC
1 ACTACATAATTAAAAACATTACATAAGTCTTAAAATA
22684286 ACTACATAATTAAAAACATTACATAAGTCTTAAAATTA
1 ACTACATAATTAAAAACATTACATAAGTCTTAAAA-TA
22684324 AC-ACATAATT
1 ACTACATAATT
22684334 GAAATGTAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
37 41 0.93
38 3 0.07
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.33
Consensus pattern (37 bp):
ACTACATAATTAAAAACATTACATAAGTCTTAAAATA
Found at i:22684487 original size:38 final size:39
Alignment explanation
Indices: 22684443--22684559 Score: 200
Period size: 39 Copynumber: 3.0 Consensus size: 39
22684433 GACTTAGAGT
*
22684443 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
*
22684481 TAGACTTTAGTTTTAGTTTTATTGGGTTAAGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
*
22684520 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
22684559 T
1 T
22684560 TGGGTTGGAT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 27 0.36
39 47 0.64
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.50
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
Found at i:22684558 original size:13 final size:13
Alignment explanation
Indices: 22684540--22684564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22684530 TTTTAGTTTT
22684540 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
22684553 ATTGGGTTGGGT
1 ATTGGGTTGGGT
22684565 TGGATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:22691401 original size:181 final size:182
Alignment explanation
Indices: 22691017--22691493 Score: 528
Period size: 181 Copynumber: 2.6 Consensus size: 182
22691007 ACCATCCCCA
* *
22691017 CCCACTTCCTCTTTTCCAATTTGGAGATATTGCTAGACATAATATTCGGGTAAAACACAGTCGAC
1 CCCACTTCCTCTTTTCCATTTTGGAGATATTGCTAGACATAATGTTCGGGTAAAACACAGTCGAC
** * *
22691082 ACCC-T-AGTAAAAAGGTTAAAACAGTAAGACTTAGAGCCACCACTTAGATGATACAAATCACAT
66 ACCCTTGAAAAAAAAGGTTAAAACAGTAAGACTTAGAGCCACCACTCAGATAATACAAATCACAT
* * * * * * *
22691145 AACTAACAAACATTATCAATGAGGAATTGAATGTCTCAACTATAATCATCCTG
131 AACAAACAAACATGATCAATGAGG-ATCGAATGTCTCAACGACAATCACCCTC
* *
22691198 CCCACTTCCTCTTTTCCATTTTGGAGGTATTGCTAGACATAATGTT-TGGTAAAACAACAGTCGA
1 CCCACTTCCTCTTTTCCATTTTGGAGATATTGCTAGACATAATGTTCGGGTAAAAC-ACAGTCGA
** * *
22691262 CACCCTTGCAAAAAAAAGG-TAAAAGGGTAAGGCATT-GAGCCACCGCTCAGATAATACAAATCA
65 CACCCTTG-AAAAAAAAGGTTAAAACAGTAAGAC-TTAGAGCCACCACTCAGATAATACAAATCA
* *
22691325 CATAACAAAC-ATCGATGAT-AA-GCA-G-TCGAATGTCTCACCGACAATCACCCTCC
128 CATAACAAACAAAC-ATGATCAATG-AGGATCGAATGTCTCAACGACAATCACCCT-C
* *
22691378 CCCACTTCCTCCTTTTTCATTTTGGAGATATTGCTATACATAATGTTCGGGTAAAACACAGTCAG
1 CCCACTTCCT-CTTTTCCATTTTGGAGATATTGCTAGACATAATGTTCGGGTAAAACACAGTC-G
* * * * * *
22691443 ACGCTCTTG-TAAAAAA-GTTAAAACAGTAAGACATAGAGCCGCCATTCAGAT
64 ACACCCTTGAAAAAAAAGGTTAAAACAGTAAGACTTAGAGCCACCACTCAGAT
22691494 TTCAGATGAT
Statistics
Matches: 248, Mismatches: 35, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
179 23 0.09
180 48 0.19
181 97 0.39
182 22 0.09
183 48 0.19
184 10 0.04
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.26
Consensus pattern (182 bp):
CCCACTTCCTCTTTTCCATTTTGGAGATATTGCTAGACATAATGTTCGGGTAAAACACAGTCGAC
ACCCTTGAAAAAAAAGGTTAAAACAGTAAGACTTAGAGCCACCACTCAGATAATACAAATCACAT
AACAAACAAACATGATCAATGAGGATCGAATGTCTCAACGACAATCACCCTC
Found at i:22693864 original size:23 final size:22
Alignment explanation
Indices: 22693838--22693880 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
22693828 TTTTAAATAT
*
22693838 TTTATCTTATTCTAAAATTTTCA
1 TTTAT-TTATTATAAAATTTTCA
*
22693861 TTTATTTCTTATAAAATTTT
1 TTTATTTATTATAAAATTTT
22693881 AAATTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATTTATTATAAAATTTTCA
Found at i:22694758 original size:17 final size:17
Alignment explanation
Indices: 22694736--22694772 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
22694726 TAAACCATGT
22694736 TATTATATATATATA-TA
1 TATTATAT-TATATAGTA
22694753 TATTATATTATATAGTA
1 TATTATATTATATAGTA
22694770 TAT
1 TAT
22694773 CATAAATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTATATTATATAGTA
Found at i:22695416 original size:12 final size:12
Alignment explanation
Indices: 22695395--22695432 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
22695385 TATTATTATA
22695395 ATATTTAATTTT
1 ATATTTAATTTT
22695407 AT-TATTAATTATT
1 ATAT-TTAATT-TT
22695420 ATATTTAATTTT
1 ATATTTAATTTT
22695432 A
1 A
22695433 GAAAAATAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.04
12 11 0.48
13 10 0.43
14 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTTAATTTT
Found at i:22695423 original size:25 final size:24
Alignment explanation
Indices: 22695384--22695432 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
22695374 AGATGACTTT
22695384 TTATTATTATAATATTTAATTTTA
1 TTATTATTATAATATTTAATTTTA
*
22695408 TTATTAATTATTATATTTAATTTTA
1 TTATT-ATTATAATATTTAATTTTA
22695433 GAAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
TTATTATTATAATATTTAATTTTA
Found at i:22695427 original size:13 final size:13
Alignment explanation
Indices: 22695389--22695429 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
22695379 ACTTTTTATT
*
22695389 ATTATAATATTTA
1 ATTATTATATTTA
22695402 ATT-TTAT-TATTA
1 ATTATTATAT-TTA
22695414 ATTATTATATTTA
1 ATTATTATATTTA
22695427 ATT
1 ATT
22695430 TTAGAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
11 1 0.04
12 9 0.38
13 13 0.54
14 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTATTATATTTA
Found at i:22702034 original size:27 final size:27
Alignment explanation
Indices: 22702001--22702056 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
22701991 GATTATGTGT
*
22702001 TAGGCTTTGGGCCAAATGGATTTAATC
1 TAGGCTTTGGGCCAAATAGATTTAATC
22702028 TAGGCTTTGGGCCAAATAGATTTAATC
1 TAGGCTTTGGGCCAAATAGATTTAATC
22702055 TA
1 TA
22702057 TGTCTTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (27 bp):
TAGGCTTTGGGCCAAATAGATTTAATC
Found at i:22707005 original size:56 final size:56
Alignment explanation
Indices: 22706908--22707023 Score: 189
Period size: 56 Copynumber: 2.1 Consensus size: 56
22706898 ATGATACTGG
* *
22706908 AGTG-GAAAAAGATACACGGGATTGATTTGATCAAAGCGACTGAAGAGAAAGTGAA
1 AGTGAGAAAAAAATACACGGGATTGATTTGATCAAAGAGACTGAAGAGAAAGTGAA
* *
22706963 AGTGAGAAAAAAATACACGGGGTTGATTTGATCAGAGAGACTGAAGAGAAAGTGAA
1 AGTGAGAAAAAAATACACGGGATTGATTTGATCAAAGAGACTGAAGAGAAAGTGAA
22707019 AGTGA
1 AGTGA
22707024 TTCGTGACAG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
55 4 0.07
56 52 0.93
ACGTcount: A:0.44, C:0.08, G:0.30, T:0.18
Consensus pattern (56 bp):
AGTGAGAAAAAAATACACGGGATTGATTTGATCAAAGAGACTGAAGAGAAAGTGAA
Found at i:22708278 original size:28 final size:30
Alignment explanation
Indices: 22708247--22708304 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
22708237 GAAAATATAG
*
22708247 ATTAGGGGTTAAAT-TGAGAAAT-GTGAAA
1 ATTAGGGGTCAAATGTGAGAAATGGTGAAA
* *
22708275 ATTATGGGTCAAATGTGGGAAATGGTGAAA
1 ATTAGGGGTCAAATGTGAGAAATGGTGAAA
22708305 TATATGGGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
29 7 0.28
30 6 0.24
ACGTcount: A:0.40, C:0.02, G:0.31, T:0.28
Consensus pattern (30 bp):
ATTAGGGGTCAAATGTGAGAAATGGTGAAA
Found at i:22711698 original size:22 final size:22
Alignment explanation
Indices: 22711667--22711728 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
22711657 ATTTGAAATT
22711667 TTTTATAATATTATTTTTTAAAA
1 TTTTA-AATATTATTTTTTAAAA
*
22711690 TTTTAAATATTA-TTTGTAAAA
1 TTTTAAATATTATTTTTTAAAA
*
22711711 TTTTAAATAAATATTTTT
1 TTTTAAAT-ATTATTTTT
22711729 AATAATATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 16 0.47
22 10 0.29
23 8 0.24
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTAAATATTATTTTTTAAAA
Found at i:22711711 original size:21 final size:21
Alignment explanation
Indices: 22711641--22711719 Score: 79
Period size: 21 Copynumber: 3.6 Consensus size: 21
22711631 TGGTTTTAAA
* *
22711641 AAAATTTGAAATGTATATTTG-
1 AAAATTTTAAATAT-TATTTGT
* *
22711662 AAATTTTTTATAATATTATTTTTT
1 AAA-ATTTTA-AATATTA-TTTGT
22711686 AAAATTTTAAATATTATTTGT
1 AAAATTTTAAATATTATTTGT
22711707 AAAATTTTAAATA
1 AAAATTTTAAATA
22711720 AATATTTTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 20 0.42
22 13 0.27
23 12 0.25
24 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (21 bp):
AAAATTTTAAATATTATTTGT
Found at i:22711910 original size:21 final size:21
Alignment explanation
Indices: 22711872--22711916 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
22711862 AAACCTTTTT
*
22711872 AAAATTATATTTAAATTTTAAA
1 AAAATAATATTTAAA-TTTAAA
*
22711894 AAAATAATATTT-TATTTAAA
1 AAAATAATATTTAAATTTAAA
22711914 AAA
1 AAA
22711917 TCAAAAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 1 0.05
22 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAATAATATTTAAATTTAAA
Done.