Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65706892
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869813 characters in sequence are not A, C, G, or T
File 77 of 218
Found at i:22949638 original size:159 final size:157
Alignment explanation
Indices: 22949396--22949848 Score: 368
Period size: 159 Copynumber: 2.9 Consensus size: 157
22949386 TAACTTATAT
* * * * *
22949396 ATAAACTTACATAATACATAACTTAAATAAAATT-TA-TATATA-AACTTACATAA--TACATAA
1 ATAAA-TTACATAATACATAACTTACAT-AACTTACATTATACACAACTTACACAACTTACATAA
* * **
22949456 CTTACATAATAACTTACATAACTTATAT-ATA-A-ACTGGCATAACTTACATAATA-AC-A-TA-
64 CTTACATAATAACTTACACAACTTACATAATACATACTGAAATAACTTACATAATACACAACTAC
22949514 ATAACTTACATAATACATAGCCTACACAACTTAC
129 ATAACTTA-ATAATA-ATA---TACACAACTTAC
* *
22949548 ATAAATAACTTACATAATACATAACTTTCATAACTTACATTATACAC-ATTATACACAACTTACA
1 AT--A-AA-TTACATAATACATAACTTACATAACTTACATTATACACAACT-TACACAACTTACA
* * * *
22949612 TAACTTACTTAAT-ATTATACACAACTTACATAATACATTACTTAAATAACTTACATTATACACA
61 TAACTTACATAATAACT-TACACAACTTACATAATACA-TACTGAAATAACTTACATAATACACA
* * *
22949676 ACTTACATAACTTAATTATATTATAGACAACTTAC
124 AC-TACATAACTTAATAATAATATACACAACTTAC
* *
22949711 ATAAATTACATAATACATAACTTACATAACTTACATTATACACAACTTACATAACTTACAT-TC-
1 ATAAATTACATAATACATAACTTACATAACTTACATTATACACAACTTACACAACTTACATAACT
* * * * * *
22949774 TAC---ACAACTTACATAACTTATATAATACATAACTCACATAACCTACATAATACACAACTTAC
66 TACATAATAACTTACACAACTTACATAATACAT-ACTGAAATAACTTACATAATACACAAC-TAC
*
22949836 ATAGCTTACATAA
129 ATAACTTA-ATAA
22949849 GTTGTCTTAT
Statistics
Matches: 246, Mismatches: 32, Indels: 43
0.77 0.10 0.13
Matches are distributed among these distances:
152 2 0.01
153 1 0.00
154 58 0.24
155 29 0.12
156 7 0.03
157 9 0.04
158 3 0.01
159 78 0.32
160 7 0.03
161 2 0.01
163 30 0.12
164 2 0.01
165 1 0.00
166 2 0.01
167 7 0.03
168 8 0.03
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.32
Consensus pattern (157 bp):
ATAAATTACATAATACATAACTTACATAACTTACATTATACACAACTTACACAACTTACATAACT
TACATAATAACTTACACAACTTACATAATACATACTGAAATAACTTACATAATACACAACTACAT
AACTTAATAATAATATACACAACTTAC
Found at i:22952484 original size:43 final size:43
Alignment explanation
Indices: 22952382--22952696 Score: 368
Period size: 43 Copynumber: 7.3 Consensus size: 43
22952372 GCGTTTTTTA
* * * * **
22952382 AAAAGACGCCGCT-AAAGTCGTGTTCTTTAGCGGCGTTTAT-AA
1 AAAAG-CGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* *
22952424 AAAAGTGCCGCTAAAAGTCATGATTTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* * *
22952467 AGAAGTGCCGCTAAAAGTCATGATCTATAGCGGTGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* * * * * *
22952510 AGACGCGCCACTAAAATTCATGATCTATGGCGGCGTTTGAGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
22952553 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* * *
22952596 AAAAGCGCCGCTAAAAGTCACGATCTATAGTGGCGTTTGTGAG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* *
22952639 AAAAGCACTGCTAAAAGTCATGAGT-TATAGCGGCGTTTGT-GG
1 AAAAGCGCCGCTAAAAGTCATGA-TCTATAGCGGCGTTTGTGGG
*
22952681 AAGAAGTGCCGCTAAA
1 AA-AAGCGCCGCTAAA
22952697 GGTCTTGACT
Statistics
Matches: 234, Mismatches: 35, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
41 6 0.03
42 30 0.13
43 197 0.84
44 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
Found at i:22960827 original size:18 final size:20
Alignment explanation
Indices: 22960788--22960824 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
22960778 GGTAAAATTG
22960788 TTATTCTCAAAAAATAAAAT
1 TTATTCTCAAAAAATAAAAT
22960808 TTATTCT-AAAAAATAAA
1 TTATTCTCAAAAAATAAA
22960825 TTTCTACTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (20 bp):
TTATTCTCAAAAAATAAAAT
Found at i:22968379 original size:14 final size:15
Alignment explanation
Indices: 22968350--22968380 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22968340 TTGATTTATT
22968350 AAGTTTTATGATTAA
1 AAGTTTTATGATTAA
22968365 AAGTTTTAT-ATTAA
1 AAGTTTTATGATTAA
22968379 AA
1 AA
22968381 TAAGGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (15 bp):
AAGTTTTATGATTAA
Found at i:22976196 original size:21 final size:22
Alignment explanation
Indices: 22976144--22976197 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
22976134 TTACATGTTT
* *
22976144 AATA-TTTAATTAGTTTTTTTA
1 AATATTTTATTTAGTTTTTATA
*
22976165 AATATTATATTTAG-TTTTATA
1 AATATTTTATTTAGTTTTTATA
22976186 AATATTTTATTT
1 AATATTTTATTT
22976198 TTAATTACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
AATATTTTATTTAGTTTTTATA
Found at i:22984966 original size:25 final size:26
Alignment explanation
Indices: 22984916--22984984 Score: 63
Period size: 25 Copynumber: 2.7 Consensus size: 26
22984906 TATAAATACT
* * *
22984916 AAATCCCTAAATAAAA-GATTTCAAA
1 AAATCCTTAAATAAAATAATGTCAAA
22984941 AAATCCTTAAATAAAATAATGT-AAA
1 AAATCCTTAAATAAAATAATGTCAAA
* *
22984966 ATAT-CTTAAAGTTAAATAA
1 AAATCCTTAAA-TAAAATAA
22984985 AAATATAACT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.16
25 28 0.76
26 3 0.08
ACGTcount: A:0.57, C:0.10, G:0.04, T:0.29
Consensus pattern (26 bp):
AAATCCTTAAATAAAATAATGTCAAA
Found at i:22985639 original size:25 final size:25
Alignment explanation
Indices: 22985611--22985658 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
22985601 ATAATAAACT
* *
22985611 AATGTATAATAAAATAA-AATAAGTA
1 AATGAATAA-AAAAAAAGAATAAGTA
22985636 AATGAATAAAAAAAAAGAATAAG
1 AATGAATAAAAAAAAAGAATAAG
22985659 AATAGAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (25 bp):
AATGAATAAAAAAAAAGAATAAGTA
Found at i:22987504 original size:13 final size:13
Alignment explanation
Indices: 22987486--22987511 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22987476 TGAATGATGT
22987486 TTTGATAATATAA
1 TTTGATAATATAA
22987499 TTTGATAATATAA
1 TTTGATAATATAA
22987512 AGTACCAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTGATAATATAA
Found at i:22992714 original size:17 final size:18
Alignment explanation
Indices: 22992692--22992725 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22992682 ACAGTTGTAA
22992692 TTTAAAT-TCTAATTATT
1 TTTAAATGTCTAATTATT
*
22992709 TTTAAATGTGTAATTAT
1 TTTAAATGTCTAATTAT
22992726 CACAACTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAAATGTCTAATTATT
Found at i:22992743 original size:44 final size:44
Alignment explanation
Indices: 22992693--22992782 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
22992683 CAGTTGTAAT
* * *
22992693 TTAAATTCTAATTATTTTTAAATGTGTAATTATCACAACTTCTA
1 TTAAATTATAATTATTTTTAAATCTATAATTATCACAACTTCTA
**
22992737 TTAAATTATAATTATTTTTAAATCTATAATTATCGTAACTTCTA
1 TTAAATTATAATTATTTTTAAATCTATAATTATCACAACTTCTA
22992781 TT
1 TT
22992783 TTATTTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.50
Consensus pattern (44 bp):
TTAAATTATAATTATTTTTAAATCTATAATTATCACAACTTCTA
Found at i:22996242 original size:31 final size:30
Alignment explanation
Indices: 22996180--22996242 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
22996170 GGTTTAATTT
* *
22996180 ATAATTTTTAAAAATAATTAAGAGAATAAA
1 ATAATTTTAAAAAATAATAAAGAGAATAAA
*
22996210 ATAATATTTAAAAAATAATGAAAGTGAA-AAA
1 ATAAT-TTTAAAAAATAAT-AAAGAGAATAAA
22996241 AT
1 AT
22996243 GGTAAATCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 5 0.18
31 17 0.61
32 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (30 bp):
ATAATTTTAAAAAATAATAAAGAGAATAAA
Found at i:22996333 original size:16 final size:16
Alignment explanation
Indices: 22996312--22996360 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
22996302 TTCGCTATAT
22996312 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
22996328 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
22996344 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
22996360 T
1 T
22996361 AGCAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:22996708 original size:120 final size:120
Alignment explanation
Indices: 22996573--22996802 Score: 442
Period size: 120 Copynumber: 1.9 Consensus size: 120
22996563 TTAATCATAT
*
22996573 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATAGAATTTAGTAAAATTCTTAATATT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATAGAATTTAATAAAATTCTTAATATT
22996638 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
*
22996693 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATAGAATTTAATAAAATTCTTAATATT
22996758 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTA
66 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTA
22996803 CAATACTTAC
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 108 1.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATAATTTAATAAAAATATAGAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
Found at i:22996794 original size:59 final size:59
Alignment explanation
Indices: 22996615--22996794 Score: 174
Period size: 56 Copynumber: 3.0 Consensus size: 59
22996605 AAAAATATAG
*
22996615 AATTTAGTAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATAT
1 AATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATAT
* * * * * **
22996674 -ATAATACTATAAAATATAATTTAACA-TAATTATTATTAAATAT-AATTTAATAAAA--AT-AT
1 AAT-TTA--ATAAAAT-T--CTTAATATTAAATATTCTT--ATATGAATTTTCTAAAATCATAAT
22996733 AT
58 AT
22996735 AATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATAT
1 AATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATAT
22996794 A
1 A
22996795 TAATACTACA
Statistics
Matches: 92, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
55 4 0.04
56 15 0.16
57 9 0.10
58 5 0.05
59 14 0.15
61 12 0.13
62 5 0.05
63 9 0.10
64 15 0.16
65 4 0.04
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.44
Consensus pattern (59 bp):
AATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATAT
Found at i:22996923 original size:14 final size:15
Alignment explanation
Indices: 22996904--22996936 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
22996894 CTTTATTCTT
*
22996904 AAAATTCAAAAA-TA
1 AAAATTAAAAAACTA
22996918 AAAATTAAAAAACTA
1 AAAATTAAAAAACTA
22996933 AAAA
1 AAAA
22996937 ATTTAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATTAAAAAACTA
Found at i:22997405 original size:58 final size:58
Alignment explanation
Indices: 22997282--22997420 Score: 197
Period size: 59 Copynumber: 2.4 Consensus size: 58
22997272 AAAGTTGCTA
* * *
22997282 TGTTTTGGCACTAAAAGCAACCGCAAGCCACAACTACCAGCATGTCAAGGATTAAATT
1 TGTTTTGGCACTAAAAGAAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
* * *
22997340 TGTTTTGGCACTAAAAGTAAACCACAAGTCACAAGAACCAGCATGTCAAGGATTGAATT
1 TGTTTTGGCACTAAAAG-AAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
* *
22997399 TGTTTGGGCACTAAAAGCAACC
1 TGTTTTGGCACTAAAAGAAACC
22997421 GCAATCGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
58 21 0.29
59 51 0.71
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.23
Consensus pattern (58 bp):
TGTTTTGGCACTAAAAGAAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
Found at i:23000460 original size:27 final size:28
Alignment explanation
Indices: 23000413--23000477 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 28
23000403 TATCAAAGTT
23000413 ATACATGAACTCATAAATTAT-AATTTA
1 ATACATGAACTCATAAATTATCAATTTA
* * *
23000440 ATACATGAACT-TTAATTTTATGCAATTTG
1 ATACATGAACTCATAA-ATTAT-CAATTTA
23000469 ATACATGAA
1 ATACATGAA
23000478 TACTAAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.09
27 15 0.47
29 14 0.44
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (28 bp):
ATACATGAACTCATAAATTATCAATTTA
Found at i:23004419 original size:16 final size:16
Alignment explanation
Indices: 23004398--23004433 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23004388 TTTGGTTCGC
*
23004398 TGTATTGGATTAGAGG
1 TGTATTGAATTAGAGG
23004414 TGTATTGAATTAGAGG
1 TGTATTGAATTAGAGG
23004430 TGTA
1 TGTA
23004434 ATAACAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (16 bp):
TGTATTGAATTAGAGG
Found at i:23004690 original size:18 final size:17
Alignment explanation
Indices: 23004669--23004703 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23004659 TTATTATTAA
*
23004669 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23004687 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23004704 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23004756 original size:157 final size:157
Alignment explanation
Indices: 23004556--23004872 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
23004546 TAAAATACCC
*
23004556 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
23004621 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23004686 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
23004713 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
23004778 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23004843 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
23004870 TTA
1 TTA
23004873 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23004843 original size:16 final size:16
Alignment explanation
Indices: 23004806--23004847 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23004796 TTAATCATAT
*
23004806 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23004822 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23004837 TTAAAATATAT
1 TTAAAATATAT
23004848 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23004854 original size:14 final size:15
Alignment explanation
Indices: 23004815--23004856 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23004805 TTTAAACATA
*
23004815 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23004830 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23004844 A-TATAATTTAATA
1 ATTATAATTAAATA
23004857 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23004869 original size:82 final size:82
Alignment explanation
Indices: 23004626--23004875 Score: 215
Period size: 76 Copynumber: 3.1 Consensus size: 82
23004616 TATTATTATC
* *
23004626 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
23004691 AATTTAATAAAATTCTT
66 AATTTAATAAAATTCTT
* * * *
23004708 AATAATTAGCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT--TTAAA
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATAATTAAA
* * * * *
23004761 TTTTAATAAGATTATTAATA-TC--
60 ATAT-ATAA-TTTAATAAAATTCTT
23004783 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
23004848 AATTTAATAAAATTCTT
66 AATTTAATAAAATTCTT
*
23004865 AATAATTAATA
1 AATAATAAATA
23004876 TTCTTATATG
Statistics
Matches: 124, Mismatches: 21, Indels: 46
0.65 0.11 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 8 0.06
76 19 0.15
77 6 0.05
78 13 0.10
79 14 0.11
80 6 0.05
81 19 0.15
82 18 0.15
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (82 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
AATTTAATAAAATTCTT
Found at i:23004944 original size:120 final size:121
Alignment explanation
Indices: 23004804--23005101 Score: 496
Period size: 120 Copynumber: 2.5 Consensus size: 121
23004794 ATTTAATCAT
*
23004804 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
23004869 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AA
23004926 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
23004989 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
* * * *
23005045 ATTTGAA-ATAATTAATATTAAATAAATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
23005102 TAAAATAATT
Statistics
Matches: 168, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
119 7 0.04
120 156 0.93
121 4 0.02
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
Found at i:23004974 original size:14 final size:15
Alignment explanation
Indices: 23004925--23004976 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23004915 GTAAAATATA
23004925 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23004940 TATTAAATATATTAT
1 AATTAAATATATTAT
23004955 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23004968 AATTTAATA
1 AATTAAATA
23004977 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23005187 original size:24 final size:25
Alignment explanation
Indices: 23005141--23005188 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
23005131 TTATGATTTG
23005141 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
23005167 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
23005189 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:23005256 original size:92 final size:92
Alignment explanation
Indices: 23005144--23005324 Score: 269
Period size: 92 Copynumber: 2.0 Consensus size: 92
23005134 TGATTTGTAT
* * *
23005144 AATTTAAAATAATAATTATTACATATAATTTAATAATTAATAT-TAAATTTCATAAAATTCTTGA
1 AATTTAAAATAATAATTATTAAATATAATTTAAT-AGTAATATAT-AATTTCATAAAATTCTTAA
*
23005208 TAAT-AAATTTTCTTATATGAATTTATAC
64 TAATAAAATGTTCTTATATGAATTTATAC
*
23005236 AATTTAAAATAATTAA-TATTAAATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAAT
1 AATTTAAAATAA-TAATTATTAAATATAATTTAATAGTAATATATAATTTCATAAAATTCTTAAT
23005300 AATAAAATGTTCTTATATGAATTTA
65 AATAAAATGTTCTTATATGAATTTA
23005325 CTAAAATCAA
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
91 28 0.35
92 50 0.62
93 3 0.04
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
AATTTAAAATAATAATTATTAAATATAATTTAATAGTAATATATAATTTCATAAAATTCTTAATA
ATAAAATGTTCTTATATGAATTTATAC
Found at i:23008427 original size:33 final size:33
Alignment explanation
Indices: 23008388--23008463 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
23008378 ATTATAAAGC
*
23008388 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
23008421 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
23008454 ATGTATAATT
1 ATGTATAATT
23008464 CAAGTTTTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:23008561 original size:37 final size:37
Alignment explanation
Indices: 23008506--23008587 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
23008496 GTATAAATAT
* *
23008506 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
*
23008543 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
23008580 ATTGATTA
1 ATTGATTA
23008588 ATAAATATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.40
Consensus pattern (37 bp):
ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
Found at i:23011774 original size:5 final size:5
Alignment explanation
Indices: 23011729--23011759 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
23011719 GCAAATCGGT
23011729 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
23011760 TCGGATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:23014188 original size:22 final size:22
Alignment explanation
Indices: 23014158--23014200 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23014148 ACACCAAAAC
*
23014158 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
23014180 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
23014201 AGCGCCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:23014617 original size:43 final size:43
Alignment explanation
Indices: 23014230--23014625 Score: 277
Period size: 43 Copynumber: 9.2 Consensus size: 43
23014220 CTAATGAATG
* *
23014230 CGCCGCTAAAGACCTTGATCTTTAGCGGCGCATCTTG--CACAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGC-T-TTGACCAAAAA
* *** * **** *
23014273 CGCCGCTGAAGACTAAGACCTTTAGCGGCGCTTT-AGTGGAAG
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* * ** * *
23014315 CGCCGCTAAAGACCCTGATCTTTAGCGGTGTTTTTG-GGAGAAG
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCG-CTTTGACCAAAAA
* *** * **
23014358 TGCCGCTAAAGACAAGGATCTTTAGCGGCACTTCT--CTCTCAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTT-TGAC-CAAAAA
* * ** **
23014401 CGCCGCTAAAGATCCTTATCTTTAGCGGCGCTTTCCCCTCAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
*
23014444 CGCCGC-AATAGACCCTGATCTTTAGCGGTGCTTTGACCAAAAA
1 CGCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* *
23014487 CGCCGC-AATAAACCCTGATCTTCAGCGGCGCTTTGACCAAAAA
1 CGCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* ** * ** *
23014530 CGCCACTAAAGACTATGATCTTTAGTGGCGCTTTTTCCACAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
* *
23014573 CGCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
*
23014616 CGCCACTAAA
1 CGCCGCTAAA
23014626 TTTGGCAGAT
Statistics
Matches: 277, Mismatches: 66, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.01
42 32 0.12
43 240 0.87
44 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAA
Found at i:23014962 original size:21 final size:21
Alignment explanation
Indices: 23014933--23015025 Score: 114
Period size: 21 Copynumber: 4.4 Consensus size: 21
23014923 TTTGACGCTG
*
23014933 CTCTACTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
23014954 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
23014975 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
23014996 CTGTACTTCTCTCACTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
23015017 CTCTGCTTC
1 CTCTGCTTC
23015026 TCTTACTGCC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.06, C:0.45, G:0.15, T:0.33
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:23015026 original size:21 final size:21
Alignment explanation
Indices: 23014973--23015045 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 21
23014963 CCTCGCTTTA
* * *
23014973 GCCTCTGCTTCCCTCGCTGCA
1 GCCTCTGCTTCTCTCACTGCC
* *
23014994 GCCTGTACTTCTCTCACTGCC
1 GCCTCTGCTTCTCTCACTGCC
*
23015015 GCCTCTGCTTCTCTTACTGCC
1 GCCTCTGCTTCTCTCACTGCC
*
23015036 GCATCTGCTT
1 GCCTCTGCTT
23015046 TAAGCTGCTG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.07, C:0.42, G:0.16, T:0.34
Consensus pattern (21 bp):
GCCTCTGCTTCTCTCACTGCC
Found at i:23015162 original size:66 final size:65
Alignment explanation
Indices: 23015016--23015186 Score: 191
Period size: 66 Copynumber: 2.6 Consensus size: 65
23015006 CTCACTGCCG
* ** * * * *
23015016 CCTCTGCTTCTCTTACTGCCGCATCTGCTTTAAGCTGCTGCTGGATTTCTTCATACTTTCGTTGG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTG-TGCTGGAGTTCTTCATACTTTCGTTGA
23015081 A
65 A
* *
23015082 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGT-GCTGGAGTTCTTCATA-CTTTCGTTG
23015146 AA
64 AA
* * * *
23015148 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTGTG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTG
23015187 TAATTTGCTC
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
65 2 0.02
66 83 0.93
67 4 0.04
ACGTcount: A:0.12, C:0.28, G:0.19, T:0.41
Consensus pattern (65 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTGCTGGAGTTCTTCATACTTTCGTTGAA
Found at i:23020643 original size:16 final size:16
Alignment explanation
Indices: 23020622--23020665 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
23020612 ACTAAGCTAC
23020622 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
23020638 GTAAGTTATTTATTAT
1 GTAAGTTATGTATTAT
* *
23020654 GAAAATTATGTA
1 GTAAGTTATGTA
23020666 AGTTGTGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:23020684 original size:25 final size:25
Alignment explanation
Indices: 23020633--23020705 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 25
23020623 TAAGTTATGT
*
23020633 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
23020658 ATTATGTAAGTTGTGTATTAGTCAAA
1 ATTATGTAAGTTATGTATTA-TGAAA
23020684 TTATGCTATGTAAGTTATGTAT
1 --AT--TATGTAAGTTATGTAT
23020706 GTCGTATAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 18 0.46
26 4 0.10
28 2 0.05
30 15 0.38
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:23020702 original size:9 final size:9
Alignment explanation
Indices: 23020690--23021101 Score: 96
Period size: 9 Copynumber: 48.7 Consensus size: 9
23020680 CAAATTATGC
23020690 TATGTAAGT
1 TATGTAAGT
*
23020699 TATGTATGT
1 TATGTAAGT
** *
23020708 CGTATAAGT
1 TATGTAAGT
23020717 TATGTAAG-
1 TATGTAAGT
23020725 T-TGTAAGT
1 TATGTAAGT
23020733 TATGTAAGT
1 TATGTAAGT
*
23020742 TAT-TTA-T
1 TATGTAAGT
* *
23020749 TATGAAAAT
1 TATGTAAGT
*
23020758 TAAGTAAGT
1 TATGTAAGT
*
23020767 TATGTAATT
1 TATGTAAGT
*
23020776 TACG-AA-T
1 TATGTAAGT
* **
23020783 AAT-TAAAA
1 TATGTAAGT
*
23020791 AATTGTAAGT
1 TA-TGTAAGT
23020801 TATGTAAG-
1 TATGTAAGT
23020809 T-TGTAAGT
1 TATGTAAGT
23020817 TATGTAAG-
1 TATGTAAGT
*
23020825 T-TGTAAAT
1 TATGTAAGT
*
23020833 TATGTATA-A
1 TATGTA-AGT
23020842 TAT-TAA-T
1 TATGTAAGT
**
23020849 TAACTAAGT
1 TATGTAAGT
*
23020858 TATGTAATT
1 TATGTAAGT
*
23020867 TATGTATAATAT
1 TATG--TAA-GT
23020879 TAAT-TAA-T
1 T-ATGTAAGT
23020887 TAAT-TAAGT
1 T-ATGTAAGT
23020896 TATGTAA-T
1 TATGTAAGT
23020904 GTATGT-A--
1 -TATGTAAGT
*
23020911 TAT-TAACT
1 TATGTAAGT
*
23020919 AAT-TAAGT
1 TATGTAAGT
*
23020927 TATGTAATT
1 TATGTAAGT
23020936 TATG-AA-T
1 TATGTAAGT
* **
23020943 AAT-TAAAAA
1 TATGT-AAGT
*
23020952 AATGTAAGT
1 TATGTAAGT
23020961 TATGTAAG-
1 TATGTAAGT
23020969 T-TGTAAG-
1 TATGTAAGT
23020976 T-TGTAAGT
1 TATGTAAGT
23020984 TATGTAAG-
1 TATGTAAGT
23020992 T-TGTAAGT
1 TATGTAAGT
*
23021000 TATGTATA-A
1 TATGTA-AGT
23021009 TAT-TAA-T
1 TATGTAAGT
**
23021016 TAACTAAGT
1 TATGTAAGT
*
23021025 TATGTAATT
1 TATGTAAGT
*
23021034 TATGTATCATAT
1 TATGTA--A-GT
23021046 TAATGTAAGT
1 T-ATGTAAGT
*
23021056 TATGTAACT
1 TATGTAAGT
23021065 TATGT-A--
1 TATGTAAGT
23021071 TAT-TAA-T
1 TATGTAAGT
23021078 TAAT-TAAGT
1 T-ATGTAAGT
*
23021087 TATGTAATT
1 TATGTAAGT
23021096 TATGTA
1 TATGTA
23021102 TAATATTAAT
Statistics
Matches: 307, Mismatches: 50, Indels: 92
0.68 0.11 0.20
Matches are distributed among these distances:
5 2 0.01
6 8 0.03
7 54 0.18
8 59 0.19
9 156 0.51
10 12 0.04
11 5 0.02
12 4 0.01
13 7 0.02
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (9 bp):
TATGTAAGT
Found at i:23020730 original size:34 final size:31
Alignment explanation
Indices: 23020692--23020839 Score: 84
Period size: 34 Copynumber: 4.5 Consensus size: 31
23020682 AATTATGCTA
* *
23020692 TGTAAGTTATGTATGTCGTATAAGTTATGTAAGT
1 TGTAAGTTATGTATGT--TATAA-TTATGAAAAT
* *
23020726 TGTAAGTTATGTAAGTTATTTATTATGAAAAT
1 TGTAAGTTATGTATGTTA-TAATTATGAAAAT
*
23020758 TAAGTAAGTTATGTAAT-TTACGAATAATTA-AAAAAT
1 T--GTAAGTTATGT-ATGTT----ATAATTATGAAAAT
* * * *
23020794 TGTAAGTTATGTAAGTTGTAAGTTATGTAAGT
1 TGTAAGTTATGTATGTTATAA-TTATGAAAAT
*
23020826 TGTAAATTATGTAT
1 TGTAAGTTATGTAT
23020840 AATATTAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
30 3 0.03
31 3 0.03
32 26 0.29
33 3 0.03
34 41 0.46
35 1 0.01
36 6 0.07
37 5 0.06
38 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.43
Consensus pattern (31 bp):
TGTAAGTTATGTATGTTATAATTATGAAAAT
Found at i:23020733 original size:16 final size:16
Alignment explanation
Indices: 23020692--23020838 Score: 93
Period size: 16 Copynumber: 8.8 Consensus size: 16
23020682 AATTATGCTA
*
23020692 TGTAAGTTATGTATGT
1 TGTAAGTTATGTAAGT
*
23020708 CGTATAAGTTATGTAAGT
1 --TGTAAGTTATGTAAGT
23020726 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
* * * *
23020742 TATTTA-TTATGAAAAT
1 T-GTAAGTTATGTAAGT
*
23020758 TAAGTAAGTTATGTAATT
1 T--GTAAGTTATGTAAGT
** *
23020776 TACGAATAA-TTA-AAAAAT
1 T--G--TAAGTTATGTAAGT
23020794 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
23020810 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
*
23020826 TGTAAATTATGTA
1 TGTAAGTTATGTA
23020839 TAATATTAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
14 3 0.03
15 3 0.03
16 57 0.55
17 5 0.05
18 29 0.28
19 3 0.03
20 3 0.03
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.43
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:23020870 original size:34 final size:34
Alignment explanation
Indices: 23020826--23021720 Score: 584
Period size: 34 Copynumber: 28.2 Consensus size: 34
23020816 TTATGTAAGT
* *
23020826 TGTAAATTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23020860 TGTAATTTATGTATAATATTAATTAATTAA-TTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * * * * *
23020893 AGTTATGTAATGTATGTATATTAACTAATTAAGTTA
1 TGTAAT-TTATGTAT-AATATTAATTAAGTAAGTTA
* * **
23020929 TGTAATTTATGAATAAT-TAAAAAAATGTAAGTTA
1 TGTAATTTATGTATAATATTAATTAA-GTAAGTTA
* * *
23020963 TGTAA-GT-TGTA-AGT-TGTAAGTTATGTAAG-T-
1 TGTAATTTATGTATAATAT-TAA-TTAAGTAAGTTA
* *
23020993 TGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021027 TGTAATTTATGTATCATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
23021058 TGTAACTTATG--T-ATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
23021089 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * *
23021120 TGT-A--TA---ATAACA-TAA--AATTCAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021145 TGTAATTTATGTATAATATTAATTAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATTAATTAAGTAAGTTA
23021183 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
23021214 TG-----TA--T--AATATTAATTAACTATGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021239 TGTAATTTATGTATCATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
** *
23021270 TGTAACATATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021304 TGTAATTTATGTATCATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
23021335 TGTAACTTATG--T-ATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
23021366 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * *
23021397 TGT-A--TA---AGAACA-TAA--AATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021422 TGTAATTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021456 TGTAATTTATGTATAATATTAATTAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATTAATTAAGTAAGTTA
23021494 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * *
23021525 TGT-A--TA---AGAACA-TAA--AATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021550 TGTAATTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
23021584 TGTAATTTATGTATAATATTAA-T--GTATGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * **
23021615 TGTAATTTATGAATAAT-TAAAAAAAATGTAAGTTA
1 TGTAATTTATGTATAATAT-TAATTAA-GTAAGTTA
* * *
23021650 TGTAAGTTGTAAGT-T-ATA--AGTTATGTAAG-T-
1 TGTAA-TT-TATGTATAATATTAATTAAGTAAGTTA
* * *
23021680 TGTCAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
23021714 TGTAATT
1 TGTAATT
23021721 AGAGATGGGT
Statistics
Matches: 676, Mismatches: 91, Indels: 188
0.71 0.10 0.20
Matches are distributed among these distances:
22 8 0.01
23 1 0.00
24 10 0.01
25 50 0.07
26 5 0.01
28 30 0.04
29 6 0.01
30 18 0.03
31 172 0.25
32 43 0.06
33 34 0.05
34 186 0.28
35 38 0.06
36 16 0.02
37 6 0.01
38 53 0.08
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (34 bp):
TGTAATTTATGTATAATATTAATTAAGTAAGTTA
Found at i:23020945 original size:160 final size:157
Alignment explanation
Indices: 23020726--23021105 Score: 491
Period size: 160 Copynumber: 2.4 Consensus size: 157
23020716 TTATGTAAGT
* * * * * *
23020726 TGTAAGTTATGTAAGTTATTTATTATGAAAATTAAGTAAGTTATGTAATTTACGAATAATTAAAA
1 TGTAAGTTATGTAACTTATGTA-TAT--TAACTAATTAAGTTATGTAATTTATGAATAATTAAAA
*
23020791 AATTGTAAG-T-T-A-TGTAAGTTGTAAGTTATGTAAGTTGTAAATTATGTATAATATTAATTAA
63 AAATGTAAGTTGTAAGTGTAAGTTGTAAGTTATGTAAGTTGTAAATTATGTATAATATTAATTAA
*
23020852 CTAAGTTATGTAATTTATGTATAATATTAATTAA
128 CTAAGTTATGTAATTTATGTAT--CA-T-ATTAA
*
23020886 TTAATTAAGTTATGTAA-TGTATGTATATTAACTAATTAAGTTATGTAATTTATGAATAATTAAA
1 -T--GTAAGTTATGTAACT-TATGTATATTAACTAATTAAGTTATGTAATTTATGAATAATTAAA
*
23020950 AAAATGTAAGTTATGTAAGTTGTAAGTTGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAA
62 AAAATGTAAG-T-TGTAAG-TGTAAGTTGTAAGTTATGTAAGTTGTAAATTATGTATAATATTAA
23021015 TTAACTAAGTTATGTAATTTATGTATCATATTAA
124 TTAACTAAGTTATGTAATTTATGTATCATATTAA
* *
23021049 TGTAAGTTATGTAACTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAAT
1 TGTAAGTTATGTAACTTATGTATATTAACTAATTAAGTTATGTAATTTATGAATAAT
23021106 ATTAATGTAA
Statistics
Matches: 196, Mismatches: 12, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
160 92 0.47
161 2 0.01
162 5 0.03
163 23 0.12
164 2 0.01
165 2 0.01
167 70 0.36
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.45
Consensus pattern (157 bp):
TGTAAGTTATGTAACTTATGTATATTAACTAATTAAGTTATGTAATTTATGAATAATTAAAAAAA
TGTAAGTTGTAAGTGTAAGTTGTAAGTTATGTAAGTTGTAAATTATGTATAATATTAATTAACTA
AGTTATGTAATTTATGTATCATATTAA
Found at i:23020975 original size:7 final size:7
Alignment explanation
Indices: 23020963--23021000 Score: 58
Period size: 7 Copynumber: 5.1 Consensus size: 7
23020953 ATGTAAGTTA
23020963 TGTAAGT
1 TGTAAGT
23020970 TGTAAGT
1 TGTAAGT
23020977 TGTAAGTT
1 TGTAAG-T
23020985 ATGTAAGT
1 -TGTAAGT
23020993 TGTAAGT
1 TGTAAGT
23021000 T
1 T
23021001 ATGTATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.72
8 2 0.07
9 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (7 bp):
TGTAAGT
Found at i:23020975 original size:16 final size:16
Alignment explanation
Indices: 23020953--23021005 Score: 74
Period size: 16 Copynumber: 3.3 Consensus size: 16
23020943 AATTAAAAAA
23020953 ATGTAAGTTATGTAAG-T
1 ATGTAAG-T-TGTAAGTT
23020970 -TGTAAGTTGTAAGTT
1 ATGTAAGTTGTAAGTT
23020985 ATGTAAGTTGTAAGTT
1 ATGTAAGTTGTAAGTT
23021001 ATGTA
1 ATGTA
23021006 TAATATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.18
15 2 0.06
16 26 0.76
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (16 bp):
ATGTAAGTTGTAAGTT
Found at i:23020983 original size:23 final size:23
Alignment explanation
Indices: 23020954--23021000 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
23020944 ATTAAAAAAA
23020954 TGTAAGTTATGTAAGTTGTAAGT
1 TGTAAGTTATGTAAGTTGTAAGT
23020977 TGTAAGTTATGTAAGTTGTAAGT
1 TGTAAGTTATGTAAGTTGTAAGT
23021000 T
1 T
23021001 ATGTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.45
Consensus pattern (23 bp):
TGTAAGTTATGTAAGTTGTAAGT
Found at i:23021125 original size:22 final size:22
Alignment explanation
Indices: 23021026--23021128 Score: 76
Period size: 22 Copynumber: 4.9 Consensus size: 22
23021016 TAACTAAGTT
* *
23021026 ATGTAATTTATGTATCATATTA
1 ATGTAAGTTATGTATAATATTA
*
23021048 ATGTAAGTTATGTA-ACTTATGTA
1 ATGTAAGTTATGTATA-ATAT-TA
* *
23021071 TAT-TAA-TTA-AT-TAA-GTT-
1 -ATGTAAGTTATGTATAATATTA
*
23021088 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
23021110 ATGTAAGTTATGTATAATA
1 ATGTAAGTTATGTATAATA
23021129 ACATAAAATT
Statistics
Matches: 62, Mismatches: 9, Indels: 20
0.68 0.10 0.22
Matches are distributed among these distances:
16 2 0.03
17 3 0.05
18 4 0.06
19 2 0.03
20 3 0.05
21 4 0.06
22 37 0.60
23 5 0.08
24 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:23021156 original size:9 final size:9
Alignment explanation
Indices: 23021142--23021378 Score: 52
Period size: 9 Copynumber: 25.8 Consensus size: 9
23021132 TAAAATTCAG
23021142 TTATGTAAT
1 TTATGTAAT
23021151 TTATGTATAAT
1 TTATG--TAAT
23021162 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
23021172 TAAT-TAAG
1 TTATGTAAT
23021180 TTATGTAAT
1 TTATGTAAT
23021189 TTATGTATAAT
1 TTATG--TAAT
*
23021200 ATTAATGTAAG
1 -TT-ATGTAAT
23021211 TTATGT-AT
1 TTATGTAAT
*
23021219 AATAT-TAA-
1 -TTATGTAAT
**
23021227 TTAACT-AT
1 TTATGTAAT
23021235 GTTATGTAAT
1 -TTATGTAAT
23021245 TTATGTATCAT
1 TTATGTA--AT
*
23021256 ATTAATGTAAG
1 -TT-ATGTAAT
*
23021267 TTATGTAAC
1 TTATGTAAT
*
23021276 ATATGT-AT
1 TTATGTAAT
*
23021284 AATAT-TAA-
1 -TTATGTAAT
** *
23021292 TTAACTAAG
1 TTATGTAAT
23021301 TTATGTAAT
1 TTATGTAAT
23021310 TTATGTATCAT
1 TTATGTA--AT
*
23021321 ATTAATGTAAG
1 -TT-ATGTAAT
*
23021332 TTATGTAAC
1 TTATGTAAT
23021341 TTATGT-A-
1 TTATGTAAT
23021348 -TAT-TAAT
1 TTATGTAAT
* *
23021355 TAAT-TAAG
1 TTATGTAAT
23021363 TTATGTAAT
1 TTATGTAAT
23021372 TTATGTA
1 TTATGTA
23021379 TAATATTAAT
Statistics
Matches: 171, Mismatches: 26, Indels: 62
0.66 0.10 0.24
Matches are distributed among these distances:
5 1 0.01
6 4 0.02
7 5 0.03
8 25 0.15
9 84 0.49
10 12 0.07
11 17 0.10
12 8 0.05
13 15 0.09
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.48
Consensus pattern (9 bp):
TTATGTAAT
Found at i:23021208 original size:22 final size:22
Alignment explanation
Indices: 23021144--23021227 Score: 99
Period size: 22 Copynumber: 4.1 Consensus size: 22
23021134 AAATTCAGTT
23021144 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
* *
23021166 AT-TAA-TTA-AT-TAA-GTT-
1 ATGTAATTTATGTATAATATTA
23021182 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
*
23021204 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
23021226 AT
1 AT
23021228 TAACTATGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
16 2 0.04
17 5 0.10
18 6 0.12
19 2 0.04
20 6 0.12
21 5 0.10
22 25 0.49
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:23021251 original size:56 final size:56
Alignment explanation
Indices: 23021166--23021572 Score: 381
Period size: 56 Copynumber: 6.7 Consensus size: 56
23021156 TATAATATTA
23021166 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
* * *
23021222 ATTAATTAACTATGTTATGTAATTTATGTATCATATTAATGTAAGTTATGTAACATATGTATAAT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGT-A---A-GT----TATGTATAAT
* *
23021287 ATTAATTAACTAAGTTATGTAATTTATGTATCATATTAATGTAAGTTATGTAACTTATGTAT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-A--TA---AT
*
23021349 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAG
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
* *
23021405 A--ACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGT
1 ATTA-AT-TAATTAAGTTATGTAATTTATGTAT-A-A-T-A-T---T-A---ATGTAAGTTATGT
23021468 ATAAT
52 ATAAT
*
23021473 ATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAG
1 ATTAA-T---TAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
*
23021533 A--ACATAAAATTAAGTTATGTAATTTATGTATAATATTAAT
1 ATTA-AT-TAATTAAGTTATGTAATTTATGTATAATATTAAT
23021573 TAACTAAGTT
Statistics
Matches: 300, Mismatches: 16, Indels: 70
0.78 0.04 0.18
Matches are distributed among these distances:
54 1 0.00
55 2 0.01
56 103 0.34
57 3 0.01
58 3 0.01
59 6 0.02
60 21 0.07
61 5 0.02
62 51 0.17
63 1 0.00
64 3 0.01
65 52 0.17
67 1 0.00
68 18 0.06
69 2 0.01
70 3 0.01
71 1 0.00
72 24 0.08
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (56 bp):
ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
Found at i:23021270 original size:22 final size:22
Alignment explanation
Indices: 23021238--23021401 Score: 75
Period size: 22 Copynumber: 7.7 Consensus size: 22
23021228 TAACTATGTT
*
23021238 ATGTAATTTATGTATCATATTA
1 ATGTAAGTTATGTATCATATTA
*
23021260 ATGTAAGTTATGTAACATATGT-
1 ATGTAAGTTATGTATCATAT-TA
* *
23021282 A--TAATATTAAT-TAAC-TAAGTT-
1 ATGTAA-GTT-ATGTATCAT-A-TTA
*
23021303 ATGTAATTTATGTATCATATTA
1 ATGTAAGTTATGTATCATATTA
* *
23021325 ATGTAAGTTATGTAACTTATGTA
1 ATGTAAGTTATGTATCATAT-TA
*
23021348 TAT-TAA-TTAAT-TA--A-GTT-
1 -ATGTAAGTT-ATGTATCATATTA
* *
23021365 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATCATATTA
23021387 ATGTAAGTTATGTAT
1 ATGTAAGTTATGTAT
23021402 AAGAACATAA
Statistics
Matches: 110, Mismatches: 12, Indels: 40
0.68 0.07 0.25
Matches are distributed among these distances:
16 2 0.02
17 5 0.05
18 5 0.05
19 1 0.01
20 5 0.05
21 15 0.14
22 63 0.57
23 12 0.11
24 2 0.02
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (22 bp):
ATGTAAGTTATGTATCATATTA
Found at i:23021354 original size:277 final size:280
Alignment explanation
Indices: 23020853--23021634 Score: 956
Period size: 277 Copynumber: 2.8 Consensus size: 280
23020843 ATTAATTAAC
* * *
23020853 TAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATGTATGTATATTAAC
1 TAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAAT-AT
* *
23020918 TAATTAAGTTATGTAATTTATGAATAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTGTAAG
65 TAATTAAGTTATG----TTATGAATAATTAAAAAAATCTAAGTTATGTAAGTTGTAAGTTATAAG
**
23020983 TTATGTAAGTTGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTA
126 TTATGTAAGTTGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTA
23021048 ATGTAAGTTATGTAACTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATG
191 ATGTAAGTTATGTAACTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATG
*
23021113 TAAGTTATGTATAATAACATAAAAT
256 TAAGTTATGTATAAGAACATAAAAT
*
23021138 TCAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATT
1 TAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATT
** * *
23021203 AATGTAAGTTATG-TAT-AAT-ATT-AATTAA-CTATGTTATGTAA-TT-TATG-TATCATA-TT
66 AAT-TAAGTTATGTTATGAATAATTAAAAAAATCTAAGTTATGTAAGTTGTAAGTTAT-A-AGTT
23021259 AATGTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATT
128 -ATGTAAG-T-TGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATT
23021324 AATGTAAGTTATGTAACTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAAT
190 AATGTAAGTTATGTAACTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAAT
23021389 GTAAGTTATGTATAAGAACATAAAAT
255 GTAAGTTATGTATAAGAACATAAAAT
*
23021415 TAAGTTATGTAATTTATGTAT-A-A-T-ATTAATTAACTAAGTTATGTAATTTATGTATAATATT
1 TAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATT
* * * * **
23021476 AATTAA-TTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-A-TAAG-AACA
66 AATTAAGTT-A-T--GTTATG-AA-TAAT-TA-AA-A-AAATCTAAGTTATGTAAGT-TGTAAGT
* * * ** *
23021537 TA-AAATTAAGTTA--TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATA
120 TATAAGTTATGTAAGTTGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATC
* * *
23021599 ATATTAATGTATGTTATGTAATTTATGAATAATTAA
185 ATATTAATGTAAGTTATGTAACTTATGTAT-ATTAA
23021635 AAAAAATGTA
Statistics
Matches: 442, Mismatches: 29, Indels: 56
0.84 0.06 0.11
Matches are distributed among these distances:
271 2 0.00
272 4 0.01
273 42 0.10
274 7 0.02
275 12 0.03
276 16 0.04
277 166 0.38
278 5 0.01
279 4 0.01
280 78 0.18
281 6 0.01
283 2 0.00
284 10 0.02
285 76 0.17
286 10 0.02
287 2 0.00
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (280 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATT
AATTAAGTTATGTTATGAATAATTAAAAAAATCTAAGTTATGTAAGTTGTAAGTTATAAGTTATG
TAAGTTGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTAATGTA
AGTTATGTAACTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGT
TATGTATAAGAACATAAAAT
Found at i:23021506 original size:128 final size:128
Alignment explanation
Indices: 23021204--23021606 Score: 546
Period size: 128 Copynumber: 3.2 Consensus size: 128
23021194 TATAATATTA
* * *
23021204 ATGTAAGTTATGTATAATATTAATTAACT-A-T--GTTATGTAATTTATGTATCATATTAATGTA
1 ATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTA
* * * *
23021265 AGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTAA-T--
66 AGTTATGT---ATA---AGAACA-TAA--AATTAAGTTATGTAATTTATGTATAATATTAATTAA
*
23021327 GTAAGTT
122 CTAAGTT
*
23021334 ATGTAACTTATG-----TA-T-ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTA
1 ATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTA
23021392 AGTTATGTATAAGAACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTT
66 AGTTATGTATAAGAACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTT
23021455 ATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTA
1 ATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTA
23021520 AGTTATGTATAAGAACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTT
66 AGTTATGTATAAGAACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTT
23021583 ATGTAATTTATGTATAATATTAAT
1 ATGTAATTTATGTATAATATTAAT
23021607 GTATGTTATG
Statistics
Matches: 250, Mismatches: 9, Indels: 30
0.87 0.03 0.10
Matches are distributed among these distances:
118 30 0.12
119 1 0.00
120 3 0.01
121 21 0.08
123 6 0.02
124 5 0.02
125 3 0.01
126 2 0.01
127 38 0.15
128 130 0.52
130 11 0.04
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (128 bp):
ATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTA
AGTTATGTATAAGAACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTT
Found at i:23021581 original size:90 final size:94
Alignment explanation
Indices: 23021449--23021618 Score: 294
Period size: 90 Copynumber: 1.9 Consensus size: 94
23021439 ATTAATTAAC
*
23021449 TAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATT
1 TAAGTTATGTAATTTATGTATAATATTAATTAATTAACTAAGTTATGTAATTTATGTATAATATT
23021514 AATGTAAGTTATGTATAAGAACATAAAAT
66 AATGTAAGTTATGTATAAGAACATAAAAT
23021543 TAAGTTATGTAATTTATGTAT-A-A-T-ATTAATTAACTAAGTTATGTAATTTATGTATAATATT
1 TAAGTTATGTAATTTATGTATAATATTAATTAATTAACTAAGTTATGTAATTTATGTATAATATT
*
23021604 AATGTATGTTATGTA
66 AATGTAAGTTATGTA
23021619 ATTTATGAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 4
0.93 0.03 0.05
Matches are distributed among these distances:
90 50 0.68
91 1 0.01
92 1 0.01
93 1 0.01
94 21 0.28
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.46
Consensus pattern (94 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAATTAACTAAGTTATGTAATTTATGTATAATATT
AATGTAAGTTATGTATAAGAACATAAAAT
Found at i:23021662 original size:16 final size:16
Alignment explanation
Indices: 23021640--23021692 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
23021630 ATTAAAAAAA
23021640 ATGTAAGTTATGTAAG-T
1 ATGTAAG-T-TGTAAGTT
*
23021657 -TGTAAGTTATAAGTT
1 ATGTAAGTTGTAAGTT
*
23021672 ATGTAAGTTGTCAGTT
1 ATGTAAGTTGTAAGTT
23021688 ATGTA
1 ATGTA
23021693 TAATATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 5 0.16
15 2 0.06
16 24 0.77
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (16 bp):
ATGTAAGTTGTAAGTT
Found at i:23021671 original size:23 final size:23
Alignment explanation
Indices: 23021643--23021689 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
23021633 AAAAAAAATG
23021643 TAAGTTATGTAAGTTGTAAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
*
23021666 TAAGTTATGTAAGTTGTCAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
23021689 T
1 T
23021690 GTATAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (23 bp):
TAAGTTATGTAAGTTGTAAGTTA
Found at i:23026609 original size:41 final size:41
Alignment explanation
Indices: 23026523--23026924 Score: 436
Period size: 41 Copynumber: 9.8 Consensus size: 41
23026513 TTTTGTTACT
* ** * * *
23026523 ATTAGCGGCGCTTCGGTAAAAACGCCGCTAAAGGT-CAATAC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGA-GC
* * * * * *
23026564 ATTAGCGGCGCTTAAATACAAACGCCGCTGAAGA-CAAGAGA
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATC-CGAGC
* * ** * *
23026605 ATTAGTGGCGCTCAGTTAAAAATGCCGCTAAAGATCCGAGT
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGC
* *
23026646 ACTAGCGGCGCTT-GTATAAAAACGCCGCTAAAGATCCGAGC
1 ATTAGCGGCGCTTAG-ACAAAAACGCCGCTAAAGATCCGAGC
* * *
23026687 ATTAGCAGCGCATAGACAAAAACGCCGCTAAAGATTCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGC
* * *
23026728 ATTAGCGGCGCCTACACGAAAACGCCGCTAAAGA-CTCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATC-CGAGC
*
23026769 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGC
* * *
23026810 ATTAGCGGCGCCTACACGAAAACGCCGCTAAAGA-CTCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATC-CGAGC
*
23026851 ATTAGCGGCGCCTAGACAAAAACGCCGCTAAAGATCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGC
*
23026892 ATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAG
23026925 GTTTAAAAAA
Statistics
Matches: 307, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.01
41 300 0.98
42 5 0.02
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.15
Consensus pattern (41 bp):
ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGC
Found at i:23026669 original size:82 final size:82
Alignment explanation
Indices: 23026540--23026924 Score: 488
Period size: 82 Copynumber: 4.7 Consensus size: 82
23026530 GCGCTTCGGT
* * * * * * * **
23026540 AAAAACGCCGCTAAAGGT-CAATACATTAGCGGCGCTTAAATACAAACGCCGCTGAAGACAAGAG
1 AAAAACGCCGCTAAAGATCCGA-GCATTAGCGGCGCTTACACAAAAACGCCGCTAAAGACTCGAG
* * **
23026604 AATTAGTGGCGC-TCAGTT
65 CATTAGCGGCGCAT-AGAC
* * * ** *
23026622 AAAAATGCCGCTAAAGATCCGAGTACTAGCGGCGCTTGTATAAAAACGCCGCTAAAGA-TCCGAG
1 AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAGACT-CGAG
*
23026686 CATTAGCAGCGCATAGAC
65 CATTAGCGGCGCATAGAC
* * *
23026704 AAAAACGCCGCTAAAGATTCGAGCATTAGCGGCGCCTACACGAAAACGCCGCTAAAGACTCGAGC
1 AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAGACTCGAGC
23026769 ATTAGCGGCGCATAGAC
66 ATTAGCGGCGCATAGAC
* *
23026786 AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCCTACACGAAAACGCCGCTAAAGACTCGAGC
1 AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAGACTCGAGC
*
23026851 ATTAGCGGCGCCTAGAC
66 ATTAGCGGCGCATAGAC
23026868 AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
23026925 GTTTAAAAAA
Statistics
Matches: 268, Mismatches: 31, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
82 264 0.99
83 4 0.01
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.15
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAGACTCGAGC
ATTAGCGGCGCATAGAC
Found at i:23027094 original size:40 final size:40
Alignment explanation
Indices: 23026982--23027097 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 40
23026972 GCGCTTTATG
* * *
23026982 TAAAACGCCGCTAATTC-CTATTTTTAGCGGCGCTTCCGGA
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTT-TGGA
* * **
23027022 T-AATCGCCGTTAAAGCTCTACCTTTAGCGGCGCTTTGGA
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTTGGA
* * *
23027061 TAAATCGCCGCTAATGCTCGATTTTTTGTGGCGCTTT
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTT
23027098 TGCTCCAAAC
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (40 bp):
TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTTGGA
Found at i:23047281 original size:36 final size:36
Alignment explanation
Indices: 23047236--23047313 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
23047226 TACTCAATAT
* **
23047236 ATACATACCTTTGCCTAGTCTCTTTATCATTTCTTA
1 ATACATACCTTTGCCTAGTCACTTTATCATCACTTA
*
23047272 ATACATACCTTTGCTTAGTCACTTTATCATCACTTA
1 ATACATACCTTTGCCTAGTCACTTTATCATCACTTA
23047308 ATACAT
1 ATACAT
23047314 CCATACCTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.27, C:0.24, G:0.05, T:0.44
Consensus pattern (36 bp):
ATACATACCTTTGCCTAGTCACTTTATCATCACTTA
Found at i:23055484 original size:111 final size:110
Alignment explanation
Indices: 23055195--23055615 Score: 607
Period size: 111 Copynumber: 3.9 Consensus size: 110
23055185 ATTAAAATTC
** * * * *
23055195 AAAAGGATATTTGGCAATTTGGTTAAACGAG--AAATCGAAACCTAGCACCTTAGGGCACG-TTC
1 AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTC
* * *
23055257 CTCGAATTTCTAAACGCAAAACGTTGCCTTATTTTGAAATTTTTG
66 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG
* * * * * *
23055302 -AAAGGATATTTAGCTATTTGGTTGTACAAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTT
1 AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTC
23055366 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG
66 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG
* *
23055411 AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAAATTGACACCCAGCACCTTAGGGCATGTTT
1 AAAAGGATATTAAGCCATTTGGTTGAACGAG-AAAAATCGAAACCCAGCACCTTAGGGCATGTTT
*
23055476 TCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG
65 CCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG
* *
23055522 AAAAGGATATTAAGCCATTTGGTTGAACGAAAAAAATCGACACCCAGCACCTTAGGGCATGTTTC
1 AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTC
* *
23055587 CTCGAATTTCCAAACGCTAAATATTGCCT
66 CTCGAATTTCCAAACGCAAAACATTGCCT
23055616 CAATTAGAAA
Statistics
Matches: 285, Mismatches: 24, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
106 25 0.09
108 25 0.09
109 44 0.15
110 85 0.30
111 106 0.37
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (110 bp):
AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTC
CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG
Found at i:23055580 original size:221 final size:216
Alignment explanation
Indices: 23055195--23055615 Score: 601
Period size: 221 Copynumber: 1.9 Consensus size: 216
23055185 ATTAAAATTC
** *
23055195 AAAAGGATATTTGGCAATTTGGTTAAACGAGAAATCGAAACCTAGCACCTTAGGGCACGTTCCTC
1 AAAAGGATATTAAGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTCCTC
* * * * *
23055260 GAATTTCTAAACGCAAAACGTTGCCTTATTTTGAAATTTTTGAAAGGATATTTAGCTATTTGGTT
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTGAAAGGATATTAAGCCATTTGGTT
* *
23055325 GTACAAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACAT
131 GAACAAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTCCTCGAATTTCCAAACGCAAAACAT
23055390 TGCCTTATTTTAAAATTTTTG
196 TGCCTTATTTTAAAATTTTTG
* * * * *
23055411 AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAAATTGACACCCAGCACCTTAGGGCATGTTT
1 AAAAGGATATTAAGCAATTTGGTTAAACGAG---AAATCGAAACCCAGCACCTTAGGGCACG-TT
*
23055476 TCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTGAAAAGGATATTAAGCCATT
62 CCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTG-AAAGGATATTAAGCCATT
* * *
23055541 TGGTTGAACGAA-AAAAATCGACACCCAGCACCTTAGGGCATGTTTCCTCGAATTTCCAAACGCT
126 TGGTTGAAC-AAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTCCTCGAATTTCCAAACGCA
*
23055605 AAATATTGCCT
190 AAACATTGCCT
23055616 CAATTAGAAA
Statistics
Matches: 179, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
216 27 0.15
219 24 0.13
220 44 0.25
221 82 0.46
222 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (216 bp):
AAAAGGATATTAAGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTCCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTGAAAGGATATTAAGCCATTTGGTT
GAACAAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTCCTCGAATTTCCAAACGCAAAACAT
TGCCTTATTTTAAAATTTTTG
Found at i:23056194 original size:3 final size:3
Alignment explanation
Indices: 23056144--23056182 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
23056134 GTAAAGACGG
23056144 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
23056183 ACAAAATAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23057455 original size:14 final size:14
Alignment explanation
Indices: 23057436--23057489 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
23057426 TTTCTTTCTT
23057436 TTTATTTGTTTTTC
1 TTTATTTGTTTTTC
*
23057450 TTTATTTCCTTTTTC
1 TTTATTT-GTTTTTC
23057465 AGTTTTTATTTGTTTTTC
1 ----TTTATTTGTTTTTC
23057483 TTTATTT
1 TTTATTT
23057490 TTTATTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 14 0.42
15 6 0.18
18 6 0.18
19 7 0.21
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (14 bp):
TTTATTTGTTTTTC
Found at i:23057505 original size:65 final size:63
Alignment explanation
Indices: 23057355--23057506 Score: 155
Period size: 65 Copynumber: 2.3 Consensus size: 63
23057345 CTGCCTATGG
* ** *
23057355 TATTTTTTCTAATTTTTTAATTTGTTTTTCATTTTTTCCTTTTTTTGTTTTTTTTGTCGTTGTT
1 TATTTTTTCTTATTTTTT-ATTTGTTTTTCATTTTTTCCTTTTTCAGTTTTTTTTGTCGTTCTT
* **
23057419 TGTCATTTTTCTT-TCTTTTTATTTGTTTTTC-TTTATTTCCTTTTTCAGTTTTTATTTGTTTTT
1 TAT--TTTTTCTTAT-TTTTTATTTGTTTTTCATTT-TTTCCTTTTTCAGTTTTT-TTTGTCGTT
23057482 CTT
61 CTT
*
23057485 TATTTTTTATTATTTGTTTATT
1 TATTTTTTCTTATTT-TTTATT
23057507 ATTTTTTTAT
Statistics
Matches: 72, Mismatches: 9, Indels: 13
0.77 0.10 0.14
Matches are distributed among these distances:
64 14 0.19
65 35 0.49
66 23 0.32
ACGTcount: A:0.10, C:0.09, G:0.07, T:0.75
Consensus pattern (63 bp):
TATTTTTTCTTATTTTTTATTTGTTTTTCATTTTTTCCTTTTTCAGTTTTTTTTGTCGTTCTT
Found at i:23057514 original size:24 final size:24
Alignment explanation
Indices: 23057470--23057523 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
23057460 TTTTCAGTTT
* *
23057470 TTATTTGTTTTTCTTTATTTTTTA
1 TTATTTGTTTTTATTTATTTTATA
23057494 TTATTTGTTTATTATTT-TTTTATA
1 TTATTTGTTT-TTATTTATTTTATA
*
23057518 ATATTT
1 TTATTT
23057524 TAAATCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.76
Consensus pattern (24 bp):
TTATTTGTTTTTATTTATTTTATA
Found at i:23057515 original size:11 final size:11
Alignment explanation
Indices: 23057467--23057516 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
23057457 CCTTTTTCAG
23057467 TTTTTATT-TGT
1 TTTTTATTAT-T
23057478 TTTTCT-TTA-T
1 TTTT-TATTATT
23057488 TTTTTATTATT
1 TTTTTATTATT
*
23057499 TGTTTATTATT
1 TTTTTATTATT
23057510 TTTTTAT
1 TTTTTAT
23057517 AATATTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 1 0.03
10 8 0.24
11 23 0.70
12 1 0.03
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (11 bp):
TTTTTATTATT
Found at i:23057556 original size:22 final size:22
Alignment explanation
Indices: 23057531--23057580 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
23057521 TTTTAAATCT
*
23057531 TTTATAATATTATTTTTTAAAA
1 TTTATAATATAATTTTTTAAAA
* *
23057553 TTTAAAATATAATTTTTTAATA
1 TTTATAATATAATTTTTTAAAA
23057575 -TTATAA
1 TTTATAA
23057581 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTATAATATAATTTTTTAAAA
Found at i:23057666 original size:21 final size:22
Alignment explanation
Indices: 23057626--23057686 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
23057616 TTTCAAATTT
*
23057626 ATTATTTTTTATAATATTTTAAAC
1 ATTATATTTTA-AA-ATTTTAAAC
*
23057650 A-TATATTTTAAAATTTTAAAT
1 ATTATATTTTAAAATTTTAAAC
*
23057671 ATTATTTTTTAAAATT
1 ATTATATTTTAAAATT
23057687 ATTTTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 9 0.27
22 15 0.45
23 8 0.24
24 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTATATTTTAAAATTTTAAAC
Found at i:23057682 original size:14 final size:13
Alignment explanation
Indices: 23057663--23057698 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
23057653 TATTTTAAAA
23057663 TTTTAAATATTATT
1 TTTTAAA-ATTATT
23057677 TTTTAAAATTATT
1 TTTTAAAATTATT
*
23057690 TTTAAAAAT
1 TTTTAAAAT
23057699 ATTCAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAAAATTATT
Found at i:23057691 original size:12 final size:12
Alignment explanation
Indices: 23057663--23057701 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
23057653 TATTTTAAAA
23057663 TTTTAAATATTATT
1 TTTTAAA-ATTA-T
23057677 TTTTAAAATTAT
1 TTTTAAAATTAT
*
23057689 TTTTAAAAATAT
1 TTTTAAAATTAT
23057701 T
1 T
23057702 CAAAAGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
13 4 0.17
14 7 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:23061312 original size:485 final size:485
Alignment explanation
Indices: 23060403--23061375 Score: 1946
Period size: 485 Copynumber: 2.0 Consensus size: 485
23060393 ATTTTATTGC
23060403 TTACAGCATGATAGTAGTACTGTATAAAAATTTCGTTAAGAAATTTTACCGTTTGCGTGCTTAAT
1 TTACAGCATGATAGTAGTACTGTATAAAAATTTCGTTAAGAAATTTTACCGTTTGCGTGCTTAAT
23060468 TTGATAAAAAGGATTAAATTGTGTAAAGTGTAAAAGTTGAGTTCTAGTAGCTAAAGGTATTAAAT
66 TTGATAAAAAGGATTAAATTGTGTAAAGTGTAAAAGTTGAGTTCTAGTAGCTAAAGGTATTAAAT
23060533 AGCTATAGAACCTTAAAGTATGAGTCCTTATATGGTAATTAGACCGTTTATGTTGATAGTGGAAT
131 AGCTATAGAACCTTAAAGTATGAGTCCTTATATGGTAATTAGACCGTTTATGTTGATAGTGGAAT
23060598 ATGATGGCTTGGCATTATTGAATTTGTAATGTTTTTAAAGGTTATAAAAGTAAATTAGTAAATAA
196 ATGATGGCTTGGCATTATTGAATTTGTAATGTTTTTAAAGGTTATAAAAGTAAATTAGTAAATAA
23060663 ATGACAAATTAAGTAAATTTAAGTAAATTTATCATCTTTTTCTATCATCTTCAACCGAAATTTCA
261 ATGACAAATTAAGTAAATTTAAGTAAATTTATCATCTTTTTCTATCATCTTCAACCGAAATTTCA
23060728 AAGGCAAGAAAGCCATTGAAGAAGCTAGGGTTCGGCCAACATAATTCCTATTGCATGTGAGTGGT
326 AAGGCAAGAAAGCCATTGAAGAAGCTAGGGTTCGGCCAACATAATTCCTATTGCATGTGAGTGGT
23060793 TTTTAATGATTTCTATGTTTTTGAGATTGTTGTAGCTTAATCTAGCTAGCCCGAGGACTAATTTG
391 TTTTAATGATTTCTATGTTTTTGAGATTGTTGTAGCTTAATCTAGCTAGCCCGAGGACTAATTTG
23060858 TGAAACTGTTAAACTATTAAGGTTTTTCCA
456 TGAAACTGTTAAACTATTAAGGTTTTTCCA
23060888 TTACAGCATGATAGTAGTACTGTATAAAAATTTCGTTAAGAAATTTTACCGTTTGCGTGCTTAAT
1 TTACAGCATGATAGTAGTACTGTATAAAAATTTCGTTAAGAAATTTTACCGTTTGCGTGCTTAAT
23060953 TTGATAAAAAGGATTAAATTGTGTAAAGTGTAAAAGTTGAGTTCTAGTAGCTAAAGGTATTAAAT
66 TTGATAAAAAGGATTAAATTGTGTAAAGTGTAAAAGTTGAGTTCTAGTAGCTAAAGGTATTAAAT
23061018 AGCTATAGAACCTTAAAGTATGAGTCCTTATATGGTAATTAGACCGTTTATGTTGATAGTGGAAT
131 AGCTATAGAACCTTAAAGTATGAGTCCTTATATGGTAATTAGACCGTTTATGTTGATAGTGGAAT
23061083 ATGATGGCTTGGCATTATTGAATTTGTAATGTTTTTAAAGGTTATAAAAGTAAATTAGTAAATAA
196 ATGATGGCTTGGCATTATTGAATTTGTAATGTTTTTAAAGGTTATAAAAGTAAATTAGTAAATAA
23061148 ATGACAAATTAAGTAAATTTAAGTAAATTTATCATCTTTTTCTATCATCTTCAACCGAAATTTCA
261 ATGACAAATTAAGTAAATTTAAGTAAATTTATCATCTTTTTCTATCATCTTCAACCGAAATTTCA
23061213 AAGGCAAGAAAGCCATTGAAGAAGCTAGGGTTCGGCCAACATAATTCCTATTGCATGTGAGTGGT
326 AAGGCAAGAAAGCCATTGAAGAAGCTAGGGTTCGGCCAACATAATTCCTATTGCATGTGAGTGGT
23061278 TTTTAATGATTTCTATGTTTTTGAGATTGTTGTAGCTTAATCTAGCTAGCCCGAGGACTAATTTG
391 TTTTAATGATTTCTATGTTTTTGAGATTGTTGTAGCTTAATCTAGCTAGCCCGAGGACTAATTTG
23061343 TGAAACTGTTAAACTATTAAGGTTTTTCCA
456 TGAAACTGTTAAACTATTAAGGTTTTTCCA
23061373 TTA
1 TTA
23061376 ATGAATGTGT
Statistics
Matches: 488, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
485 488 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (485 bp):
TTACAGCATGATAGTAGTACTGTATAAAAATTTCGTTAAGAAATTTTACCGTTTGCGTGCTTAAT
TTGATAAAAAGGATTAAATTGTGTAAAGTGTAAAAGTTGAGTTCTAGTAGCTAAAGGTATTAAAT
AGCTATAGAACCTTAAAGTATGAGTCCTTATATGGTAATTAGACCGTTTATGTTGATAGTGGAAT
ATGATGGCTTGGCATTATTGAATTTGTAATGTTTTTAAAGGTTATAAAAGTAAATTAGTAAATAA
ATGACAAATTAAGTAAATTTAAGTAAATTTATCATCTTTTTCTATCATCTTCAACCGAAATTTCA
AAGGCAAGAAAGCCATTGAAGAAGCTAGGGTTCGGCCAACATAATTCCTATTGCATGTGAGTGGT
TTTTAATGATTTCTATGTTTTTGAGATTGTTGTAGCTTAATCTAGCTAGCCCGAGGACTAATTTG
TGAAACTGTTAAACTATTAAGGTTTTTCCA
Found at i:23064597 original size:28 final size:29
Alignment explanation
Indices: 23064531--23064605 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 29
23064521 TGGTGGTTGC
23064531 TCTGGGTGATATGAACTCGAACCGCCCATG
1 TCTGGGTGATATGAACTCGAACCG-CCATG
*** *
23064561 TCCAAGTGATATGAACTCGAACTG-CATG
1 TCTGGGTGATATGAACTCGAACCGCCATG
23064589 TCTGGGTGATATGAACT
1 TCTGGGTGATATGAACT
23064606 ACTTTGCGAC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 18 0.47
30 20 0.53
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (29 bp):
TCTGGGTGATATGAACTCGAACCGCCATG
Found at i:23069633 original size:19 final size:19
Alignment explanation
Indices: 23069609--23069646 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
23069599 AGTGGCTAGT
23069609 TATGTTTTAG-TTAATTAAA
1 TATG-TTTAGTTTAATTAAA
23069628 TATGTTTAGTTTAATTAAA
1 TATGTTTAGTTTAATTAAA
23069647 CATAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (19 bp):
TATGTTTAGTTTAATTAAA
Found at i:23069678 original size:22 final size:24
Alignment explanation
Indices: 23069638--23069681 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
23069628 TATGTTTAGT
23069638 TTAATTAAACATAATTAATTAAGG
1 TTAATTAAACATAATTAATTAAGG
*
23069662 TTAA-TAAA-ATACTTAATTAA
1 TTAATTAAACATAATTAATTAA
23069682 AGTATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 4 0.21
24 4 0.21
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (24 bp):
TTAATTAAACATAATTAATTAAGG
Found at i:23075675 original size:40 final size:41
Alignment explanation
Indices: 23075595--23075690 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 41
23075585 CGCAAAAAGG
* *
23075595 TCAAGCATTAACGGCATTACTGAAACAAACGCCGCTATAGA
1 TCAAGCATTAGCGGCATTACTCAAACAAACGCCGCTATAGA
*
23075636 TCAAGCATTAGCGGCACTT-TTCAAA-AAACGCCGCTATAGA
1 TCAAGCATTAGCGGCA-TTACTCAAACAAACGCCGCTATAGA
*
23075676 TCGAGCATTAGCGGC
1 TCAAGCATTAGCGGC
23075691 GATTTTAGGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 29 0.58
41 19 0.38
42 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (41 bp):
TCAAGCATTAGCGGCATTACTCAAACAAACGCCGCTATAGA
Found at i:23075780 original size:66 final size:73
Alignment explanation
Indices: 23075710--23075853 Score: 194
Period size: 75 Copynumber: 2.0 Consensus size: 73
23075700 AAAACACCAT
*
23075710 AAAAAAGTTGAGCAAAAC-A-CG-TTG-G-TGAGC-TTAGTGGCATTAGCGGCGCTTTTT-AAAA
1 AAAAAAGTTGAGCAAAACGACCGTTTGTGTTAAGCTTTAGTGGCATTAGCGGCGCTTTTTAAAAA
*
23075768 AATGTCGC
66 AATGCCGC
23075776 AAAAAAGTTGAGCAAAACGACGTCGTTTGTTGTTAAGCTTTAGTGGCATTAGCGGCGCTTTTTAA
1 AAAAAAGTTGAGCAAAACGAC--CGTTTG-TGTTAAGCTTTAGTGGCATTAGCGGCGCTTTTTAA
23075841 AAAAATGCCGC
63 AAAAATGCCGC
23075852 AA
1 AA
23075854 TAGATCGAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
66 18 0.27
67 1 0.02
70 2 0.03
71 3 0.05
73 1 0.02
74 4 0.06
75 24 0.36
76 13 0.20
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (73 bp):
AAAAAAGTTGAGCAAAACGACCGTTTGTGTTAAGCTTTAGTGGCATTAGCGGCGCTTTTTAAAAA
AATGCCGC
Found at i:23076048 original size:14 final size:14
Alignment explanation
Indices: 23076031--23076074 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
23076021 TATTTTGTTA
23076031 TTAGAGTTT-TGAGT
1 TTAGAGTTTATG-GT
*
23076045 TTAGGGTTTATGGT
1 TTAGAGTTTATGGT
23076059 TTAGAGTTTATGGT
1 TTAGAGTTTATGGT
23076073 TT
1 TT
23076075 GGGGTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 25 0.93
15 2 0.07
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.52
Consensus pattern (14 bp):
TTAGAGTTTATGGT
Found at i:23076080 original size:21 final size:21
Alignment explanation
Indices: 23076031--23076082 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
23076021 TATTTTGTTA
* *
23076031 TTAGAGTTTTGAGTTTAGGGT
1 TTAGGGTTTAGAGTTTAGGGT
* *
23076052 TTATGGTTTAGAGTTTATGGT
1 TTAGGGTTTAGAGTTTAGGGT
*
23076073 TTGGGGTTTA
1 TTAGGGTTTA
23076083 TTATTTTATG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
TTAGGGTTTAGAGTTTAGGGT
Found at i:23076081 original size:14 final size:14
Alignment explanation
Indices: 23076043--23076083 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
23076033 AGAGTTTTGA
23076043 GTTTAGGGTTTATG
1 GTTTAGGGTTTATG
*
23076057 GTTTAGAGTTTATG
1 GTTTAGGGTTTATG
*
23076071 GTTTGGGGTTTAT
1 GTTTAGGGTTTAT
23076084 TATTTTATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.15, C:0.00, G:0.34, T:0.51
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:23076109 original size:22 final size:21
Alignment explanation
Indices: 23076056--23076119 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
23076046 TAGGGTTTAT
* *
23076056 GGTTTAG-AGTTTATGGTTTGG
1 GGTTTAGTATTTTATGG-TTAG
*
23076077 GGTTTATTATTTTATGGTTAG
1 GGTTTAGTATTTTATGGTTAG
23076098 GGTCTTAGTATTATTCATGGTT
1 GGT-TTAGTATT-TT-ATGGTT
23076120 TTAGGGGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 12 0.34
22 15 0.43
23 2 0.06
24 6 0.17
ACGTcount: A:0.17, C:0.03, G:0.28, T:0.52
Consensus pattern (21 bp):
GGTTTAGTATTTTATGGTTAG
Found at i:23081906 original size:16 final size:16
Alignment explanation
Indices: 23081887--23081947 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
23081877 GCAAAAATAG
23081887 AAATAAAATAAAAATT
1 AAATAAAATAAAAATT
**
23081903 AAATAAAATAGTAATT
1 AAATAAAATAAAAATT
*
23081919 -AATAATAATAATAA-T
1 AAATAA-AATAAAAATT
*
23081934 AGA-AAAATAAAAAT
1 AAATAAAATAAAAAT
23081948 GTTTTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 7 0.19
15 8 0.22
16 22 0.59
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
AAATAAAATAAAAATT
Found at i:23088930 original size:17 final size:17
Alignment explanation
Indices: 23088905--23088940 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23088895 GAAATTAAGG
*
23088905 AAAAAAAATCCCATAAT
1 AAAAAAAATCCCAAAAT
*
23088922 AAAATAAATCCCAAAAT
1 AAAAAAAATCCCAAAAT
23088939 AA
1 AA
23088941 TCCCCCACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAAAAATCCCAAAAT
Found at i:23089962 original size:43 final size:43
Alignment explanation
Indices: 23089915--23090054 Score: 208
Period size: 43 Copynumber: 3.3 Consensus size: 43
23089905 ACGGTACTTT
* *
23089915 TAGCGGCGTTTGTGATAAAAGTGCCGCTAAAGGTCATGTTCTA
1 TAGCGGTGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
23089958 TAGCGGTGTTTGTGATAAAAGCGTCGCTAAAGGTCATGCTCTT
1 TAGCGGTGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTA
* *
23090001 TAGCGGTGTTTGTGATAAAAGCGCTGTTAAAGGTCATGTTCTA
1 TAGCGGTGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTA
*
23090044 TGGCGGTGTTT
1 TAGCGGTGTTT
23090055 TTGTCACATA
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (43 bp):
TAGCGGTGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTA
Found at i:23091608 original size:110 final size:109
Alignment explanation
Indices: 23091447--23091880 Score: 649
Period size: 110 Copynumber: 4.0 Consensus size: 109
23091437 AAGATTTAGG
* *
23091447 AGGATATTTGGCTATCTGGTCGAACGAG--AAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
**
23091510 GAATTTTTAAACGCAAAACATTGCCTTATTTTGAAATTTTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAA-TTTTTAAA
* * *
23091555 AGGATATTT-TCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCGCATTTTCT
1 AGGATATTTGGCC-ATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCT
*
23091619 CGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTTAAA
65 CGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
*
23091664 AGGATATTTGGCCATTTGGTCAAACGAGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCT
1 AGGATATTTGGCCATTTGGTCGAACGAG-AAAAATCGAAACCCAGCACATTAGGGCACGTTTTCT
* *
23091729 CGAATTTCGACACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
65 CGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
* * *
23091774 AGGATATTTGGTCATTTGGTCGAACGAGAAAAATCGAAACCCAGCATATTAGGGCACATTTTTCT
1 AGGATATTTGGCCATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCAC-GTTTTCT
* * * *
23091839 CAAATTTCCAAACGCAAAATATTCCCTTATTTAGAAATTTTT
65 CGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTT
23091881 TTCTTTTTGA
Statistics
Matches: 295, Mismatches: 25, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
107 1 0.00
108 23 0.08
109 59 0.20
110 212 0.72
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (109 bp):
AGGATATTTGGCCATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
Found at i:23092437 original size:29 final size:31
Alignment explanation
Indices: 23092383--23092441 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
23092373 ATATATCTAT
* *
23092383 GTATGTATATATATTATAAAATGTATATAAC
1 GTATATATATAAATTATAAAATGTATATAAC
23092414 GTATATATATAAATTAT-AAA-GTATATAA
1 GTATATATATAAATTATAAAATGTATATAA
23092442 AATACAGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 3 0.12
31 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (31 bp):
GTATATATATAAATTATAAAATGTATATAAC
Found at i:23092646 original size:12 final size:13
Alignment explanation
Indices: 23092620--23092648 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
23092610 ATATATAACA
23092620 AAAATAAACAAAT
1 AAAATAAACAAAT
23092633 AAAATAAA-AAAT
1 AAAATAAACAAAT
23092645 AAAA
1 AAAA
23092649 AGTAATCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAATAAACAAAT
Found at i:23097188 original size:2 final size:2
Alignment explanation
Indices: 23097181--23097211 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23097171 ACCTAAACAC
23097181 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
23097212 CCTGCAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23105689 original size:20 final size:20
Alignment explanation
Indices: 23105655--23105696 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23105645 AACTATTCAA
** *
23105655 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
23105675 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
23105695 AT
1 AT
23105697 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:23110758 original size:21 final size:21
Alignment explanation
Indices: 23110732--23110774 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
23110722 CACTCCAGAT
23110732 ATGTCATGCTTGAGTTGTGAC
1 ATGTCATGCTTGAGTTGTGAC
23110753 ATGTCATGCTTGAGTTGTGAC
1 ATGTCATGCTTGAGTTGTGAC
23110774 A
1 A
23110775 AAGCCAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (21 bp):
ATGTCATGCTTGAGTTGTGAC
Found at i:23111350 original size:13 final size:13
Alignment explanation
Indices: 23111332--23111371 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
23111322 CGGCCCACCC
23111332 ATATTAATTTTTT
1 ATATTAATTTTTT
23111345 ATATT-A-TTTTT
1 ATATTAATTTTTT
*
23111356 ATA-TAATTTTTA
1 ATATTAATTTTTT
23111368 ATAT
1 ATAT
23111372 ATATAATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 1 0.04
11 9 0.39
12 8 0.35
13 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTAATTTTTT
Found at i:23111586 original size:11 final size:11
Alignment explanation
Indices: 23111546--23111586 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
23111536 ACAATAACCA
23111546 TAAAATAGTAG
1 TAAAATAGTAG
* *
23111557 TAACATAATAG
1 TAAAATAGTAG
23111568 TAAAATAGTAG
1 TAAAATAGTAG
23111579 TAAAATAG
1 TAAAATAG
23111587 GGAGAAAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.15, T:0.27
Consensus pattern (11 bp):
TAAAATAGTAG
Found at i:23121542 original size:45 final size:46
Alignment explanation
Indices: 23121491--23121582 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 46
23121481 TAGGGAAACT
* * ** * *
23121491 GAATCGGGTTGTATCATATAATTGAGTATTGGG-TCAAAAGGCCAA
1 GAATCGGGTTGGATCACATAACAGAGTACTGGGTTAAAAAGGCCAA
23121536 GAATCGGGTTGGATCACATAACAGAGTACTGGGTTAAAAAGGCCAA
1 GAATCGGGTTGGATCACATAACAGAGTACTGGGTTAAAAAGGCCAA
23121582 G
1 G
23121583 GAAGTACTCG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 28 0.70
46 12 0.30
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (46 bp):
GAATCGGGTTGGATCACATAACAGAGTACTGGGTTAAAAAGGCCAA
Found at i:23126052 original size:21 final size:21
Alignment explanation
Indices: 23126028--23126096 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
23126018 GTGGTGTCGT
* *
23126028 GACATCCCTAGGTGATGTTAC
1 GACATCCCTGGGTGATGTTGC
* *
23126049 GACATCCCTGGGTTATTTTGC
1 GACATCCCTGGGTGATGTTGC
* *
23126070 GACATTCCTGGGTGATGTCGC
1 GACATCCCTGGGTGATGTTGC
23126091 GACATC
1 GACATC
23126097 AAGAGAAGAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.30
Consensus pattern (21 bp):
GACATCCCTGGGTGATGTTGC
Found at i:23131333 original size:218 final size:218
Alignment explanation
Indices: 23130796--23131341 Score: 746
Period size: 219 Copynumber: 2.5 Consensus size: 218
23130786 AGAAAAAGGA
* *
23130796 AAAAAAATACAGAAACTATCAGAAATAGG--AAAAAATTCCTTTTCTTGACTATCATAGTCTGTT
1 AAAAAAATACAGAAACTATAAGAAATAGGAAAAAAAATT-CTTTTCTTGACTATCATACTCT-TT
* * * *
23130859 TTATTTTGTTGTTAATTCATTTCAATTTTGTGTTCTTCGCGGTGATCTTGATGTGGGTTTCTGGG
64 TT-TTTTGCTGTTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTAGG
* * *
23130924 TTTTTTTTTCATCAATGGAGATTATACCCAACATTTCAAAACTTTATTTTTTTTCTTTTAAAATT
128 TTTTTTTTTCATCAAAGGAGATTATACCCAACATTTCAAAACTCTATTTTTTCTCTTTTAAAATT
*
23130989 TCTCTCTTTGAATTTATAAATTCTGG
193 TCTCTATTTGAATTTATAAATTCTGG
* * * *
23131015 AAAAAAATTACAGAAACTATTAGAAATAGGAAAAAATA-T-TTTTCTTGACTGTTATACTTTCTT
1 AAAAAAA-TACAGAAACTATAAGAAATAGGAAAAAAAATTCTTTTCTTGACTATCATAC--TCTT
* * *
23131078 TTATTTTGCTATTAATTCATTTCAATTTCATGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTAGG
63 TTTTTTTGCTGTTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTAGG
23131143 -TTTTTTTTCATCAAAGGAGATTATA-CCAACATTTCAAAACTCTA-TTTTTCTCTTTTAAAATT
128 TTTTTTTTTCATCAAAGGAGATTATACCCAACATTTCAAAACTCTATTTTTTCTCTTTTAAAATT
** *
23131205 TCTCTATTTGGGTTTATAAATTTTGG
193 TCTCTATTTGAATTTATAAATTCTGG
* *
23131231 AAAACAATGACAGAAACTGTAAGAAATAGGGAAAAAAAATTCATTTTCTTGACTATCATACTCTT
1 AAAAAAAT-ACAGAAACTATAAGAAATA-GGAAAAAAAATTC-TTTTCTTGACTATCATACTCTT
* *
23131296 TTTTTTTCCTGTTAATTCATTTCAATTTCGTGTTCTTCACGGTGAT
63 TTTTTTTGCTGTTAATTCATTTCAATTTCGTGTTCTTCGCGGTGAT
23131342 ATGTCTTGGT
Statistics
Matches: 287, Mismatches: 30, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
215 1 0.00
216 62 0.22
217 27 0.09
218 70 0.24
219 78 0.27
220 40 0.14
221 4 0.01
222 5 0.02
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (218 bp):
AAAAAAATACAGAAACTATAAGAAATAGGAAAAAAAATTCTTTTCTTGACTATCATACTCTTTTT
TTTTGCTGTTAATTCATTTCAATTTCGTGTTCTTCGCGGTGATCTTGAGGTGGGTTTCTAGGTTT
TTTTTTCATCAAAGGAGATTATACCCAACATTTCAAAACTCTATTTTTTCTCTTTTAAAATTTCT
CTATTTGAATTTATAAATTCTGG
Found at i:23131887 original size:47 final size:47
Alignment explanation
Indices: 23131833--23131928 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
23131823 ATTCAAGAGA
*
23131833 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTTGC
1 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTCGC
* *
23131880 TTAAAAAGGAAGAATAAATCAAATTTTATTATGGGTAATTAGCTCGC
1 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTCGC
23131927 TT
1 TT
23131929 CGGTAATCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.33
Consensus pattern (47 bp):
TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTCGC
Found at i:23132829 original size:98 final size:98
Alignment explanation
Indices: 23132660--23132854 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
23132650 ATGCAATAAA
* *
23132660 ACTTTAAAAGAACATCTACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCAACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
23132725 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* *
23132758 ACTTTAAAAGAACATCAACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCAACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
23132823 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
23132855 CATGATTTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCAACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:23133962 original size:19 final size:19
Alignment explanation
Indices: 23133927--23134001 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
23133917 AATCATATAT
23133927 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
23133948 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
23133967 TCTAGGATTGCATATCTTA
1 TCTAAGATTGCATATCATA
23133986 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23134002 CTCAAAAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
19 40 0.78
21 11 0.22
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23134234 original size:44 final size:45
Alignment explanation
Indices: 23134186--23134643 Score: 304
Period size: 44 Copynumber: 10.6 Consensus size: 45
23134176 CAGTGTGCCT
*
23134186 CACTGCAACTTCAGGAG-GATAAGACTTGCTTATTTAGTCTGCTT
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTATTTAGTCTGCTC
* * ** *
23134230 CACTGCAACTTCA-GTGAGATAAGACTAG---A-TGCGATATGCT-
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTATTTAG-TCTGCTC
* * * *
23134270 CTCTGCAACTTCA-GAGAGATAAGATCTAAG-GT-TTTAATCTGCTC
1 CACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTATTTAGTCTGCTC
* *
23134314 CACTGCAACTTCAGG-GAGATAAGACTTGC-CATCTTCAGTCTGCCC
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTAT-TT-AGTCTGCTC
* *
23134359 CACTGGAACTTCAGGAG-GATAAGACTTGCTTACTTAGTCTGCTC
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTATTTAGTCTGCTC
* ** *
23134403 CACTGCAACTTCAGG-GAGATAAGA-TT--TGATGCAATCTGCT-
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTATTTAGTCTGCTC
* * * * * * *
23134443 CTCTGTAACTTCA-GAGAGATAAGATCTAAGGTT-TTAATTC-GCTT
1 CACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTATTTAGTCTGCTC
* * *** *
23134487 CACTGCAACTTCAGG-GAGATAGGA-TTATCGGCTTTAATCTGCTC
1 CACTGCAACTTCAGGAGAGATAAGACTT-GCTTATTTAGTCTGCTC
* * * *
23134531 CACTACAACTTCAGG-GAGATAAGACTTGC-CATCTTCAGTTTGCCC
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTAT-TT-AGTCTGCTC
*
23134576 CACTGCAACTTCAAGAG-GATAAGACTTGCTTATTTAGTCTGCTC
1 CACTGCAACTTCAGGAGAGATAAGACTTGCTTATTTAGTCTGCTC
*
23134620 CACTGTAACTTCAGG-GAGATAAGA
1 CACTGCAACTTCAGGAGAGATAAGA
23134644 TCTACAATCT
Statistics
Matches: 322, Mismatches: 59, Indels: 66
0.72 0.13 0.15
Matches are distributed among these distances:
39 1 0.00
40 44 0.14
41 17 0.05
42 5 0.02
43 23 0.07
44 154 0.48
45 73 0.23
46 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (45 bp):
CACTGCAACTTCAGGAGAGATAAGACTTGCTTATTTAGTCTGCTC
Found at i:23134333 original size:84 final size:84
Alignment explanation
Indices: 23134218--23134507 Score: 318
Period size: 84 Copynumber: 3.4 Consensus size: 84
23134208 GACTTGCTTA
* * * * * *
23134218 TTTAGTCTGCTTCACTGCAACTTCAGTGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCAATCTGCTCTCTGCAACTTCA
23134283 GAGAGATAAGATCTAAGGT
66 GAGAGATAAGATCTAAGGT
* * * * *
23134302 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGGAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG--A--TGCAATCTG-CTCTCTGCAA
* *
23134367 CTTCAG-GAGGATAAGA-CT-TGCT
61 CTTCAGAGA-GATAAGATCTAAGGT
* * *
23134389 TACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCAATCTGCTCTCTGTAACTT
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCAATCTGCTCTCTGCAACTT
23134454 CAGAGAGATAAGATCTAAGGT
64 CAGAGAGATAAGATCTAAGGT
*
23134475 TTTAAT-TCGCTTCACTGCAACTTCAGGGAGATA
1 TTTAATCT-GCTCCACTGCAACTTCAGGGAGATA
23134508 GGATTATCGG
Statistics
Matches: 170, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
83 1 0.01
84 84 0.49
85 11 0.06
86 4 0.02
87 4 0.02
88 9 0.05
89 57 0.34
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (84 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCAATCTGCTCTCTGCAACTTCA
GAGAGATAAGATCTAAGGT
Found at i:23134456 original size:173 final size:172
Alignment explanation
Indices: 23134167--23134647 Score: 565
Period size: 173 Copynumber: 2.8 Consensus size: 172
23134157 TAGGAATTAG
* * * *
23134167 TGCCATCTTCAGTGTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTATTTAGTCTGCTTCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
* * * * * *
23134232 CTGCAACTTCAGTGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGAGAGATAAGATTTGATGCAATCTGCTCTCTGTAACTTCAGAGAGATAAGATCT
23134297 AAGGTTTTAA-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT
131 AAGGTTTTAATTC-GCTCCACTGCAACTTCAGGGAGATAAGA-T
*
23134340 TGCCATCTTCAGTCTGCCCCACTGGAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
23134405 CTGCAACTTCAGGGAGATAAGATTTGATGCAATCTGCTCTCTGTAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGAGAGATAAGATTTGATGCAATCTGCTCTCTGTAACTTCAGAGAGATAAGATCT
* *
23134470 AAGGTTTTAATTCGCTTCACTGCAACTTCAGGGAGATAGGAT
131 AAGGTTTTAATTCGCTCCACTGCAACTTCAGGGAGATAAGAT
** ** * * * * * * *
23134512 TATCGGCTTTAATCTGCTCCACTACAACTTCAGG-GAGATAAGACTTGC-CATCTTCAGTTTGCC
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAG-GATAAGACTTGCTTA-CTT-AGTCTGCT
* ** * * *
23134575 CCACTGCAACTTCA-AGAGGATAAGACTTGCTTATTTAGTCTGCTCCACTGTAACTTCAGGGAGA
63 CCACTGCAACTTCAGAGA-GATAAGA-TT--TGATGCAATCTGCT-CTCTGTAACTTCAGAGAGA
23134639 TAAGATCTA
123 TAAGATCTA
23134648 CAATCTTCAA
Statistics
Matches: 267, Mismatches: 32, Indels: 14
0.85 0.10 0.04
Matches are distributed among these distances:
171 2 0.01
172 43 0.16
173 182 0.68
174 4 0.01
176 10 0.04
177 26 0.10
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (172 bp):
TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
CTGCAACTTCAGAGAGATAAGATTTGATGCAATCTGCTCTCTGTAACTTCAGAGAGATAAGATCT
AAGGTTTTAATTCGCTCCACTGCAACTTCAGGGAGATAAGAT
Found at i:23134788 original size:132 final size:132
Alignment explanation
Indices: 23134634--23134888 Score: 474
Period size: 132 Copynumber: 1.9 Consensus size: 132
23134624 GTAACTTCAG
* *
23134634 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTT
1 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTT
23134699 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTACTCCACTACTTCTT
66 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTACTCCACTACTTCTT
23134764 AA
131 AA
23134766 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTT
1 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTT
* *
23134831 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
66 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTACTCCACT
23134889 GTCAATGCAG
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 119 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (132 bp):
GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTT
AAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTACTCCACTACTTCTT
AA
Found at i:23140354 original size:98 final size:98
Alignment explanation
Indices: 23140185--23140379 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
23140175 ATGCAATAAA
* *
23140185 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAAAAATCACACCCAATACGTTAGGGCACAATC
23140250 CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
* *
23140283 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAAAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAAAAATCACACCCAATACGTTAGGGCACAATC
* *
23140348 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCAGAATATTTCCTT
23140380 AATGATTTAA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAAAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
Found at i:23141432 original size:19 final size:19
Alignment explanation
Indices: 23141408--23141539 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
23141398 AATCATATAT
23141408 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
23141427 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
23141446 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23141465 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
23141486 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
23141505 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23141524 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23141540 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23141492 original size:59 final size:59
Alignment explanation
Indices: 23141401--23141538 Score: 221
Period size: 59 Copynumber: 2.4 Consensus size: 59
23141391 ATTACAAAAT
*
23141401 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
23141456 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
23141515 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
23141539 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 58 0.76
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:23143866 original size:12 final size:12
Alignment explanation
Indices: 23143849--23143874 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23143839 CAAAATAGGC
23143849 TTTTAGCGGCGT
1 TTTTAGCGGCGT
23143861 TTTTAGCGGCGT
1 TTTTAGCGGCGT
23143873 TT
1 TT
23143875 GGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:23143908 original size:41 final size:40
Alignment explanation
Indices: 23143863--23143982 Score: 109
Period size: 40 Copynumber: 3.0 Consensus size: 40
23143853 AGCGGCGTTT
23143863 TTAGCGGCG-TTTGGACAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGCTTT-GA-AAAAAACGCCACTAAAAATCAAGCA
* * ** *
23143904 TTAGCGGCGCTTTTATAAAAACGCCACTAAAGGTCGAGCA
1 TTAGCGGCGCTTTGAAAAAAACGCCACTAAAAATCAAGCA
* **** *
23143944 TTAGCGGTGCTTTTTGGAAAACGCCGCTAAAAAT-AAGCA
1 TTAGCGGCGCTTTGAAAAAAACGCCACTAAAAATCAAGCA
23143983 ATACCGGTGT
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 4 0.06
40 48 0.74
41 10 0.15
42 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGCTTTGAAAAAAACGCCACTAAAAATCAAGCA
Found at i:23143933 original size:40 final size:40
Alignment explanation
Indices: 23143880--23143982 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
23143870 CGTTTGGACA
23143880 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTAT-
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTT-TG
** * *
23143920 AAAAACGCCACTAAAGGTCGAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
* *
23143960 GAAAACGCCGCTAAAAAT-AAGCA
1 AAAAACGCCACTAAAAATCAAGCA
23143983 ATACCGGTGT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
39 5 0.09
40 48 0.91
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.20
Consensus pattern (40 bp):
AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
Found at i:23144110 original size:41 final size:41
Alignment explanation
Indices: 23144050--23144334 Score: 471
Period size: 41 Copynumber: 7.0 Consensus size: 41
23144040 TGAGTTTTTG
*
23144050 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATTCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
23144091 GGGCCTTTAGCGGCATTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* * *
23144132 GGGCCTTTAGCGGCGTTTGTGAAGAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
23144173 GGGCCTTTAGCGGCGTTTTGGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
23144214 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
23144255 GGGCCTTTAGCAGCGTTTTTTAAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
23144296 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
23144335 CCACTTTTGA
Statistics
Matches: 227, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 227 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.27
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:23144799 original size:14 final size:15
Alignment explanation
Indices: 23144771--23144803 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
23144761 AAGGTTTATA
23144771 GATTATGGAATTAGG
1 GATTATGGAATTAGG
23144786 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
23144800 GATT
1 GATT
23144804 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:23145577 original size:13 final size:13
Alignment explanation
Indices: 23145559--23145585 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23145549 ATAAATAAAT
23145559 AAATTAATGTAAC
1 AAATTAATGTAAC
23145572 AAATTAATGTAAC
1 AAATTAATGTAAC
23145585 A
1 A
23145586 GATTGACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
AAATTAATGTAAC
Found at i:23145636 original size:19 final size:19
Alignment explanation
Indices: 23145612--23145651 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
23145602 GATAATATGA
23145612 ATTTTAATTTATTAAAATT
1 ATTTTAATTTATTAAAATT
23145631 ATTTTAATTTATTAAAATT
1 ATTTTAATTTATTAAAATT
23145650 AT
1 AT
23145652 CATTAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTAATTTATTAAAATT
Found at i:23149564 original size:43 final size:43
Alignment explanation
Indices: 23149504--23149594 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
23149494 CTTTGAGTTC
* * * *
23149504 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
23149546 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
23149589 ATTACC
1 ATTACC
23149595 TTGCATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:23149938 original size:43 final size:41
Alignment explanation
Indices: 23149863--23150029 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 41
23149853 TTAAAAGATA
** *
23149863 TATTTTTAGCGGCGTTTGTGTTAAAAGTGCCGCTAAAGGTC
1 TATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
* *
23149904 TATTTTATAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGCTC
1 TATTTT-TAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTC
* *
23149947 AATATCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
1 --TATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
23149990 -ATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 TAT--T-TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
23150030 TTAGCGACGC
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
40 2 0.02
41 6 0.06
42 13 0.12
43 67 0.62
44 15 0.14
45 5 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (41 bp):
TATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
Found at i:23149964 original size:86 final size:85
Alignment explanation
Indices: 23149862--23150029 Score: 232
Period size: 86 Copynumber: 2.0 Consensus size: 85
23149852 TTTAAAAGAT
* ** *
23149862 ATATTTTTAGCGGCGTTTGTGTTAAAAGTGCCGCTAAAGGTCTAT-T-TTATAGCAGCGTTTGTG
1 ATATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-ATGTCTT-TAGCAGCGTTTGTG
23149925 GGAAAAAGCGCCGCTAAAGCTCA
64 GG-AAAAGCGCCGCTAAAGCTCA
* *
23149948 ATATCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGG
1 ATATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAT-GTCTTTAGCAGCGTTTGTGG
23150013 GAAAAGCGCCGCTAAAG
65 GAAAAGCGCCGCTAAAG
23150030 TTAGCGACGC
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
85 2 0.03
86 53 0.73
87 16 0.22
88 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (85 bp):
ATATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTCTTTAGCAGCGTTTGTGGG
AAAAGCGCCGCTAAAGCTCA
Found at i:23150132 original size:22 final size:21
Alignment explanation
Indices: 23150099--23150143 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
23150089 TTTAGTGGCG
*
23150099 CTAAAAAACGCCGCTAAAGGC
1 CTAAAAAACGCCGCTAAAAGC
23150120 CTAAAAAAGCGCCGCTAAAAGC
1 CTAAAAAA-CGCCGCTAAAAGC
23150142 CT
1 CT
23150144 GTTTTGGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.42, C:0.29, G:0.18, T:0.11
Consensus pattern (21 bp):
CTAAAAAACGCCGCTAAAAGC
Found at i:23157842 original size:35 final size:35
Alignment explanation
Indices: 23157727--23157829 Score: 179
Period size: 35 Copynumber: 2.9 Consensus size: 35
23157717 AACCGCTCCA
23157727 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
* **
23157762 AAACACACCAATTCTCATAAGAGCTAGTCCCTCCG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
23157797 AAACACACCAATGCTCATAAGAGCTAGTCCAAC
1 AAACACACCAATGCTCATAAGAGCTAGTCCAAC
23157830 TAAAAAATAC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.39, C:0.32, G:0.13, T:0.17
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
Found at i:23160800 original size:16 final size:18
Alignment explanation
Indices: 23160771--23160806 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
23160761 CAATTAATTT
23160771 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
23160788 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
23160805 AA
1 AA
23160807 CCCAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:23161072 original size:16 final size:18
Alignment explanation
Indices: 23161043--23161078 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
23161033 CAATTAATTT
23161043 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
23161060 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
23161077 AA
1 AA
23161079 CCCAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:23161093 original size:272 final size:270
Alignment explanation
Indices: 23160373--23161188 Score: 1436
Period size: 270 Copynumber: 3.0 Consensus size: 270
23160363 CATCCATTGT
23160373 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* * * *
23160438 ATTTCAACCCAATACAAGTTTTTTCTATTTCCCAAATTAAATATGATTTGCTTTAATTAATTTAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGC-TCAATTAATTTAA
*
23160503 ATAAATTAATTTCTCAAATAAATAATTTTCTTAACCCAATTCTAATTCTGTTAAAATTATGACAA
130 ATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAA
* *
23160568 CTTTACCATAAAAGAATCTATGAGAAAATGTATTTAATTTTTTTTTACATTAAATTAGATTCACA
195 CTTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACA
23160633 ATAACCAATTA
260 ATAACCAATTA
*
23160644 ATTTTTTCCTTTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
*
23160709 ATTCCAATCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
*
23160774 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTTTAATTCTGTTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
* *
23160839 TTTACTATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAAATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
23160904 TAACCAATTA
261 TAACCAATTA
23160914 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* *
23160979 ATTCCAACCCAACACATGTTTTTTTTCTATTTTCCAAATTAAATATTATTTGCTCAATTAATTTA
66 ATTCCAACCCAATACATG--TTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTA
23161044 AATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACA
129 AATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACA
* * * *
23161109 ACTTTACCATAAAATAATCTATGAGAAAATATATTT-AATTTTTTCTACATTAAATTGGATTTAC
194 ACTTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCAC
23161173 AATAACCAATTA
259 AATAACCAATTA
23161185 ATTT
1 ATTT
23161189 AAATCCATTT
Statistics
Matches: 520, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
270 227 0.44
271 151 0.29
272 142 0.27
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (270 bp):
ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
TAACCAATTA
Found at i:23164438 original size:15 final size:15
Alignment explanation
Indices: 23164418--23164448 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23164408 ATTTCACTAC
*
23164418 TATGTCTTTTGTATT
1 TATGTCTTTTATATT
23164433 TATGTCTTTTATATT
1 TATGTCTTTTATATT
23164448 T
1 T
23164449 TGCATGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (15 bp):
TATGTCTTTTATATT
Done.